Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 203 of 310
Found at i:66346541 original size:53 final size:50
Alignment explanation
Indices: 66346436--66346578 Score: 166
Period size: 53 Copynumber: 2.9 Consensus size: 50
66346426 CGGATCACAT
* * * *
66346436 ATCACACTGATGTCATATCTCAGATATGGTCTTACACAG---TAGCACAT
1 ATCACACTGATGCCATATCTCAGATATGGTCTTATACAGAAATAGAACAC
*
66346483 ATCACACTGATGCCATATCTCAGATATGGTCTTATACAGAAACTCATAATCAC
1 ATCACACTGATGCCATATCTCAGATATGGTCTTATACAGAAA-T-AGAA-CAC
* * *
66346536 ATCACACCGATGCCATAACTCAGCTATGGTCTTATACAGAAAT
1 ATCACACTGATGCCATATCTCAGATATGGTCTTATACAGAAAT
66346579 CACATATTAC
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
47 37 0.45
51 1 0.01
52 3 0.04
53 41 0.50
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (50 bp):
ATCACACTGATGCCATATCTCAGATATGGTCTTATACAGAAATAGAACAC
Found at i:66347439 original size:12 final size:12
Alignment explanation
Indices: 66347422--66347454 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
66347412 AAAATTTGGG
66347422 AAAGATGATGAA
1 AAAGATGATGAA
66347434 AAAGATGATGAA
1 AAAGATGATGAA
66347446 AAAGATGAT
1 AAAGATGAT
66347455 ATTTTCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (12 bp):
AAAGATGATGAA
Found at i:66352734 original size:16 final size:18
Alignment explanation
Indices: 66352708--66352740 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
66352698 AATAGATAAA
66352708 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
66352725 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
66352741 CCCGATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:66354586 original size:5 final size:5
Alignment explanation
Indices: 66354576--66354621 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
66354566 GGGGTAGGAC
66354576 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT A
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT A
66354622 AGTTATACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:66382192 original size:43 final size:43
Alignment explanation
Indices: 66382130--66382215 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
66382120 GTGGAAATTA
*
66382130 TCTTATTTAGTACTGAAACAAAACCAATATTAATACAATATTT
1 TCTTATTTAGTACTAAAACAAAACCAATATTAATACAATATTT
* *
66382173 TCTTATTTAGTACTAAAACAAAATCAATATTAATGCAATATTT
1 TCTTATTTAGTACTAAAACAAAACCAATATTAATACAATATTT
66382216 GGCAGTACAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (43 bp):
TCTTATTTAGTACTAAAACAAAACCAATATTAATACAATATTT
Found at i:66389444 original size:1 final size:1
Alignment explanation
Indices: 66389433--66389464 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
66389423 TTCTTCCTCA
*
66389433 CCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
66389465 AAAAAAAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.97, G:0.00, T:0.03
Consensus pattern (1 bp):
C
Found at i:66394613 original size:5 final size:5
Alignment explanation
Indices: 66394603--66394632 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
66394593 CTCTTACATA
66394603 GGGTC GGGTC GGGTC GGGTC GGGTC GGGTC
1 GGGTC GGGTC GGGTC GGGTC GGGTC GGGTC
66394633 AGCTTAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
GGGTC
Found at i:66400543 original size:21 final size:21
Alignment explanation
Indices: 66400519--66400558 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
66400509 GGTCGCAATG
66400519 CGGCAGTCCCTCGTTGCAACA
1 CGGCAGTCCCTCGTTGCAACA
66400540 CGGCAGTCCCTCGTTGCAA
1 CGGCAGTCCCTCGTTGCAA
66400559 TGCTACGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.38, G:0.25, T:0.20
Consensus pattern (21 bp):
CGGCAGTCCCTCGTTGCAACA
Found at i:66402009 original size:35 final size:35
Alignment explanation
Indices: 66401963--66402033 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
66401953 GCCACTAGAA
66401963 GCATAATTGGCGACACTCTATATACATAGTACACT
1 GCATAATTGGCGACACTCTATATACATAGTACACT
66401998 GCATAATTGGCGACACTCTATATACATAGTACACT
1 GCATAATTGGCGACACTCTATATACATAGTACACT
66402033 G
1 G
66402034 AGCTATGAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (35 bp):
GCATAATTGGCGACACTCTATATACATAGTACACT
Found at i:66407213 original size:14 final size:15
Alignment explanation
Indices: 66407186--66407216 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
66407176 TTTTATAGTA
66407186 ATAAAATAAAATAAC
1 ATAAAATAAAATAAC
66407201 ATAAAAT-AAATAAC
1 ATAAAATAAAATAAC
66407215 AT
1 AT
66407217 TCAAGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAAAATAAAATAAC
Found at i:66415166 original size:17 final size:18
Alignment explanation
Indices: 66415134--66415167 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66415124 CATCAAATTT
*
66415134 CATGCTTATGCAACATAA
1 CATGCTTATACAACATAA
66415152 CATGCTTA-ACAACATA
1 CATGCTTATACAACATA
66415168 TAACCATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (18 bp):
CATGCTTATACAACATAA
Found at i:66418441 original size:37 final size:37
Alignment explanation
Indices: 66418384--66418488 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
66418374 TATGATCACT
*
66418384 TATCAC-TTG-TTCCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACC
*
66418419 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACC
*
66418456 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TATCACTTTGTTTCTTGATCAGATAAGTGTAGC
66418489 TAAAGCTATC
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 6 0.09
36 3 0.05
37 56 0.86
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (37 bp):
TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACC
Found at i:66418519 original size:46 final size:46
Alignment explanation
Indices: 66418452--66418720 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
66418442 TAAGTGTAGC
* **
66418452 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
66418498 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66418544 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
66418596 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
66418642 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66418694 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
66418721 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:66418571 original size:52 final size:52
Alignment explanation
Indices: 66418495--66418714 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
66418485 TAGCTAAAGC
* *
66418495 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
66418548 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
66418600 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
66418646 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
66418698 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
66418715 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:66418617 original size:98 final size:98
Alignment explanation
Indices: 66418452--66418720 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
66418442 TAAGTGTAGC
* * *
66418452 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
66418517 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
66418551 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
66418616 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
66418649 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
66418714 GATCAGA
66 GATCAGA
66418721 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:66420780 original size:39 final size:39
Alignment explanation
Indices: 66420726--66420824 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
66420716 GGCTATTACA
66420726 ATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCT
1 ATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCT
*
66420765 ATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCT
1 ATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCT
* * *
66420804 ACGTGCTGGAAATATGTCCGG
1 ATGTGCTGGAATTATATCCGG
66420825 GCTAAAATCC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
ATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCT
Found at i:66433350 original size:111 final size:113
Alignment explanation
Indices: 66433214--66433442 Score: 329
Period size: 111 Copynumber: 2.0 Consensus size: 113
66433204 TTTTCGAAGG
* *
66433214 AGTTTTTCATGTAAAATTTGTGTGTTCGATCTTCTTTACTTTTCTTGTTCGTTATTTA-TACGA-
1 AGTTTTTCACGTAAAATTTGTGTGTTCAATCTTCTTTACTTTTCTTGTTCGTTATTTATTA-GAG
* ** *
66433277 GTTGATCCCCGACAATT-AAAAATGCTTTTAAAGGTTAAATGACATGGC
65 GTTGATCCCCAACAATTAAAAAATAATTTTAAAAGTTAAATGACATGGC
* * * *
66433325 TGTTTTTTACGTAAAATTTGTGTGTTCAATCTTCTTTACTTTTCTTGTTCGTTGTTTATTATAGG
1 AGTTTTTCACGTAAAATTTGTGTGTTCAATCTTCTTTACTTTTCTTGTTCGTTATTTATTAGAGG
*
66433390 TTTATCCCCAACAATTAAAAAATAATTTTAAAAGTTAAATGACATGGC
66 TTGATCCCCAACAATTAAAAAATAATTTTAAAAGTTAAATGACATGGC
66433438 AGTTT
1 AGTTT
66433443 ATTTTTGATA
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
111 54 0.52
112 17 0.17
113 32 0.31
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (113 bp):
AGTTTTTCACGTAAAATTTGTGTGTTCAATCTTCTTTACTTTTCTTGTTCGTTATTTATTAGAGG
TTGATCCCCAACAATTAAAAAATAATTTTAAAAGTTAAATGACATGGC
Found at i:66433844 original size:40 final size:40
Alignment explanation
Indices: 66433789--66433955 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
66433779 NNNNNNNNNN
* *
66433789 CCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT
66433829 CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT
* *
66433869 CCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGT
1 CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT
* * * *
66433909 CCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAAT
1 CCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGT
66433948 CCCGAAGG
1 CCCGAAGG
66433956 TACTTGGCTT
Statistics
Matches: 117, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.13
40 102 0.87
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT
Found at i:66441910 original size:40 final size:40
Alignment explanation
Indices: 66441808--66442065 Score: 277
Period size: 40 Copynumber: 6.5 Consensus size: 40
66441798 GTATGATAAT
* * * * **
66441808 CGGGATAAGTCCCGAAGGCAGTTTGCGCTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTACATC
* * *
66441849 TGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
66441889 CGGGCTAAGTCCCAAAGGCATTTGTACGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
66441929 CGAGCTAAGTCACGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* *
66441969 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * * *
66442009 CGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACATC
* *
66442049 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
66442066 TACTTGGCTT
Statistics
Matches: 188, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 15 0.08
40 156 0.83
41 17 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
Found at i:66450502 original size:20 final size:20
Alignment explanation
Indices: 66450477--66450514 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
66450467 ATCATGTCTG
66450477 GGACATTGGCATTGTATTAA
1 GGACATTGGCATTGTATTAA
66450497 GGACATTGGCATTGTATT
1 GGACATTGGCATTGTATT
66450515 GAGATTACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (20 bp):
GGACATTGGCATTGTATTAA
Found at i:66451737 original size:12 final size:12
Alignment explanation
Indices: 66451722--66451758 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
66451712 GGCTAGTACA
66451722 CGGGCGGGTGGC
1 CGGGCGGGTGGC
66451734 CGGGCGGGTGGC
1 CGGGCGGGTGGC
*
66451746 CGGGCGTGTGGC
1 CGGGCGGGTGGC
66451758 C
1 C
66451759 AAGTCAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.27, G:0.62, T:0.11
Consensus pattern (12 bp):
CGGGCGGGTGGC
Found at i:66454545 original size:46 final size:46
Alignment explanation
Indices: 66454495--66454667 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
66454485 TGTTTGGGCA
*
66454495 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
66454541 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
66454588 TCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
66454634 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66454668 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66462138 original size:46 final size:46
Alignment explanation
Indices: 66462088--66462260 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
66462078 TGTTTGGGCA
*
66462088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * *
66462134 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATG
* * * * *
66462179 CATCCAAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGGTGTGAAT-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
*
66462226 TCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 T-CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66462261 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 58 0.56
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
Found at i:66462243 original size:93 final size:93
Alignment explanation
Indices: 66462084--66462255 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
66462074 AGGATGTTTG
* *
66462084 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
66462149 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * ** *
66462177 GGCATCCAAACTCGTTGAGTTGAGCCCGAGTTCATTTATGGGTGTGAAT-TCCCGAGCTCGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATGT-CCGAACTCGTTGA
66462241 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
66462256 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:66464531 original size:40 final size:40
Alignment explanation
Indices: 66464437--66464581 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
66464427 TACTCGAATG
*
66464437 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
66464478 ACATCCGGACTAAGAT-CCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
66464518 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
66464558 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
66464582 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.67
41 27 0.31
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:66468322 original size:23 final size:23
Alignment explanation
Indices: 66468293--66468373 Score: 126
Period size: 23 Copynumber: 3.5 Consensus size: 23
66468283 ACGTTTACCG
66468293 CTATTAGCAGCTTTGCTGCATTA
1 CTATTAGCAGCTTTGCTGCATTA
* *
66468316 CTGTTAGCATCTTTGCTGCATTA
1 CTATTAGCAGCTTTGCTGCATTA
* *
66468339 CTTTTAGCAGCTTTGATGCATTA
1 CTATTAGCAGCTTTGCTGCATTA
66468362 CTATTAGCAGCT
1 CTATTAGCAGCT
66468374 ACGCTGCGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCATTA
Found at i:66468546 original size:28 final size:29
Alignment explanation
Indices: 66468501--66468578 Score: 77
Period size: 33 Copynumber: 2.6 Consensus size: 29
66468491 ATACTATTTT
* *
66468501 GGGCATAGGCCCACACTG-TTACTACATA
1 GGGCTTAGGCCCAGACTGATTACTACATA
* *
66468529 GGGCTTAGGCCTAGACTGAACTATTACTGCATA
1 GGGCTTAGGCCCAGACTG----ATTACTACATA
66468562 GGGCTTAGGCCCAGACT
1 GGGCTTAGGCCCAGACT
66468579 ATACTGTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 15 0.38
33 25 0.62
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (29 bp):
GGGCTTAGGCCCAGACTGATTACTACATA
Found at i:66468562 original size:33 final size:33
Alignment explanation
Indices: 66468519--66468613 Score: 111
Period size: 33 Copynumber: 2.9 Consensus size: 33
66468509 GCCCACACTG
* *
66468519 TTACTACATAGGGCTTAGGCCTAGACTGA-ACTA
1 TTACTGCATAGGGCTTAGGCCCAGACT-ATACTA
*
66468552 TTACTGCATAGGGCTTAGGCCCAGACTATACTG
1 TTACTGCATAGGGCTTAGGCCCAGACTATACTA
* * * *
66468585 TTATTGAATAGGGCTTAGGCGCAAACTAT
1 TTACTGCATAGGGCTTAGGCCCAGACTAT
66468614 TACTGTATGC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
32 1 0.02
33 53 0.98
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (33 bp):
TTACTGCATAGGGCTTAGGCCCAGACTATACTA
Found at i:66470558 original size:25 final size:25
Alignment explanation
Indices: 66470530--66470591 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
66470520 ACGTCTGTTG
* * * *
66470530 CATCATCGTTGATAGTCTTCTGCTA
1 CATCACCGTTGATAGTCCTCTACAA
**
66470555 CATCACCGTCAATAGTCCTCTACAA
1 CATCACCGTTGATAGTCCTCTACAA
66470580 CATCACCGTTGA
1 CATCACCGTTGA
66470592 AAATCCTTCG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (25 bp):
CATCACCGTTGATAGTCCTCTACAA
Found at i:66479591 original size:49 final size:49
Alignment explanation
Indices: 66479419--66479700 Score: 296
Period size: 49 Copynumber: 5.7 Consensus size: 49
66479409 ACTATTGTGA
* * *
66479419 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAATAATT
* * * * * *
66479468 GGTCGCATGTGTAATACTAAGTGCAGGCTATTATGCGTACCCAAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAATAA-T-T
* * * *
66479519 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAATAATT
* * * * * *
66479568 GGTCGCATGTGTAATACTAAGTGCAGGCTATTATGCGTACCCAAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAATAA-T-T
* * * *
66479619 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCA-ATAATT
*
66479668 GGTCACATGTGTAGTACTAAGTGTAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
66479701 TGCGTACCAG
Statistics
Matches: 186, Mismatches: 42, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
49 107 0.58
50 7 0.04
51 72 0.39
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCAATAATT
Found at i:66479594 original size:100 final size:100
Alignment explanation
Indices: 66479421--66479708 Score: 497
Period size: 100 Copynumber: 2.9 Consensus size: 100
66479411 TATTGTGAGG
66479421 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATTGGTCGCATGTGTAATACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATTGGTCGCATGTGTAATACT
66479486 AAGTGCAGGCTATTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTATTATGCGTACCCAAAAACTGTGA
66479521 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATTGGTCGCATGTGTAATACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATTGGTCGCATGTGTAATACT
66479586 AAGTGCAGGCTATTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTATTATGCGTACCCAAAAACTGTGA
* * * * *
66479621 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGATTATTGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGA-ATAATTGGTCGCATGTGTAATAC
* *
66479685 TAAGTGTAGGCTACTATGCGTACC
65 TAAGTGCAGGCTATTATGCGTACC
66479709 AGATAGCTTC
Statistics
Matches: 180, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
99 2 0.01
100 178 0.99
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGAATAATTGGTCGCATGTGTAATACT
AAGTGCAGGCTATTATGCGTACCCAAAAACTGTGA
Found at i:66482541 original size:59 final size:59
Alignment explanation
Indices: 66482360--66482749 Score: 615
Period size: 59 Copynumber: 6.6 Consensus size: 59
66482350 GAGGTGTTAC
*
66482360 AATAATTTTATGAATAATTGATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
1 AATAATTTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
* * *
66482419 AATAATTCTATGAATAATTAATTAATTTT-TATTAAATAAATAAATAATCATATTTCAT
1 AATAATTTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
* * * *
66482477 AATAATTTTACGAATAATTAATTAATTTTCAATTAATTAATTAATTAATCATATTGCAT
1 AATAATTTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
* * ** *
66482536 AATAATTCTATGAATAATTGATTAATTTTTTATTAAATAAATAAATAATCATATTTCAT
1 AATAATTTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
66482595 AATAATTTTATGAATAATTAATTAATTTTCAATTTAA-TAAATAAATAATCATATTTCAT
1 AATAATTTTATGAATAATTAATTAATTTTCAA-TTAATTAAATAAATAATCATATTTCAT
66482654 AATAATTTTATGAATAATTAATTAATTTTCAATTTAA-TAAATAAATAATCATATTTCAT
1 AATAATTTTATGAATAATTAATTAATTTTCAA-TTAATTAAATAAATAATCATATTTCAT
*
66482713 AATAATTCTATGAATAATTAATTAATTTTCAATTAAT
1 AATAATTTTATGAATAATTAATTAATTTTCAATTAAT
66482750 CATTCATTTA
Statistics
Matches: 303, Mismatches: 25, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
58 58 0.19
59 241 0.80
60 4 0.01
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (59 bp):
AATAATTTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
Found at i:66482632 original size:20 final size:20
Alignment explanation
Indices: 66482609--66482746 Score: 58
Period size: 20 Copynumber: 7.0 Consensus size: 20
66482599 ATTTTATGAA
66482609 TAATTAATTAATTTTCAATT
1 TAATTAATTAATTTTCAATT
* * **
66482629 TAATAAATAAATAATCATATT
1 TAATTAATTAATTTTCA-ATT
* *
66482650 TCA-TAA-TAATTTT--ATGAA
1 TAATTAATTAATTTTCAAT--T
66482668 TAATTAATTAATTTTCAATT
1 TAATTAATTAATTTTCAATT
* * **
66482688 TAATAAATAAATAATCATATT
1 TAATTAATTAATTTTCA-ATT
* *
66482709 TCA-TAA-TAATTCTATGAA--
1 TAATTAATTAATT-T-TCAATT
66482727 TAATTAATTAATTTTCAATT
1 TAATTAATTAATTTTCAATT
66482747 AATCATTCAT
Statistics
Matches: 80, Mismatches: 24, Indels: 28
0.61 0.18 0.21
Matches are distributed among these distances:
16 2 0.03
18 7 0.09
19 14 0.17
20 43 0.54
21 12 0.15
22 2 0.03
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.46
Consensus pattern (20 bp):
TAATTAATTAATTTTCAATT
Found at i:66486410 original size:43 final size:43
Alignment explanation
Indices: 66486341--66486497 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 43
66486331 TTCTCTCATG
* * * *
66486341 AACGCCGCTAAAGATCATGGTATTTAGCGGCGCTTCTACTAAA
1 AACGCCACTAAAGAACATGATCTTTAGCGGCGCTTCTACTAAA
* * *
66486384 AACGCCACTAAAGAACATAATCTTTAGCAGCACTTCT-CATAAA
1 AACGCCACTAAAGAACATGATCTTTAGCGGCGCTTCTAC-TAAA
** * * * * *
66486427 AACGCTGCTAAAGAACATGATATTTAGTGGCGTTTGTA-AAAA
1 AACGCCACTAAAGAACATGATCTTTAGCGGCGCTTCTACTAAA
*
66486469 AAGCGCCACTATAGAACATGATCTTTAGC
1 AA-CGCCACTAAAGAACATGATCTTTAGC
66486498 AGCATTTGTA
Statistics
Matches: 89, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 6 0.07
43 83 0.93
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (43 bp):
AACGCCACTAAAGAACATGATCTTTAGCGGCGCTTCTACTAAA
Found at i:66486506 original size:43 final size:42
Alignment explanation
Indices: 66486381--66486539 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
66486371 CGCTTCTACT
* * * *
66486381 AAAAACGCCACTAAAGAACATAATCTTTAGCAGCACTTCTCAT
1 AAAAACGCCACTAAAGAACATGATCTTTAGCAGCATTTGT-AA
** * ** *
66486424 AAAAACGCTGCTAAAGAACATGATATTTAGTGGCGTTTGTAA
1 AAAAACGCCACTAAAGAACATGATCTTTAGCAGCATTTGTAA
*
66486466 AAAAAGCGCCACTATAGAACATGATCTTTAGCAGCATTTGTAGA
1 AAAAA-CGCCACTAAAGAACATGATCTTTAGCAGCATTTGTA-A
* * * * *
66486510 AAAAGCGCCGCCAAAGATCATGTTCTTTAG
1 AAAAACGCCACTAAAGAACATGATCTTTAG
66486540 TGGCATTTTT
Statistics
Matches: 91, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
42 6 0.07
43 80 0.88
44 5 0.05
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (42 bp):
AAAAACGCCACTAAAGAACATGATCTTTAGCAGCATTTGTAA
Found at i:66486526 original size:86 final size:86
Alignment explanation
Indices: 66486341--66486543 Score: 239
Period size: 86 Copynumber: 2.4 Consensus size: 86
66486331 TTCTCTCATG
* * *
66486341 AACGCCGCTAAAGATCATGGTATTTAGCGGCGCTTCTACTAAAAACGCCACTAAAGAACATAATC
1 AACGCCGCTAAAGATCATGATATTTAGTGGCGCTTCTACAAAAAACGCCACTAAAGAACATAATC
*
66486406 TTTAGCAGCACTTCTCATAAA
66 TTTAGCAGCACTTCTCAGAAA
* * * * * *
66486427 AACGCTGCTAAAGAACATGATATTTAGTGGCGTTTGTA-AAAAAAGCGCCACTATAGAACATGAT
1 AACGCCGCTAAAGATCATGATATTTAGTGGCGCTTCTACAAAAAA-CGCCACTAAAGAACATAAT
* *
66486491 CTTTAGCAGCATTTGT-AGAAA
65 CTTTAGCAGCACTTCTCAGAAA
* * *
66486512 AAGCGCCGCCAAAGATCATGTTCTTTAGTGGC
1 AA-CGCCGCTAAAGATCATGATATTTAGTGGC
66486544 ATTTTTGCGA
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
85 11 0.11
86 87 0.89
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (86 bp):
AACGCCGCTAAAGATCATGATATTTAGTGGCGCTTCTACAAAAAACGCCACTAAAGAACATAATC
TTTAGCAGCACTTCTCAGAAA
Found at i:66486546 original size:43 final size:43
Alignment explanation
Indices: 66486424--66486578 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 43
66486414 CACTTCTCAT
* * * * * *
66486424 AAAAA-CGCTGCTAAAGAACATGATATTTAGTGGCGTTTGTAA
1 AAAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCATTTGTAG
* * * * **
66486466 AAAAAGCGCCACTATAGAACATGATCTTTAGCAGCATTTGTAG
1 AAAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCATTTGTAG
* *
66486509 AAAAAGCGCCGCCAAAGATCATGTTCTTTAGTGGCATTT-TTG
1 AAAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCATTTGTAG
* * *
66486551 CGAGAAGCACCGCTAAAGATCATGTTCT
1 -AAAAAGCGCCGCTAAAGATCATGTTCT
66486579 ATAGCGACAT
Statistics
Matches: 91, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
42 7 0.08
43 84 0.92
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCATTTGTAG
Found at i:66487618 original size:30 final size:30
Alignment explanation
Indices: 66487578--66487636 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
66487568 CCAAAATGAG
*
66487578 AAATTTCAAAAAATAATAATGA-ATTAGTAT
1 AAATTGCAAAAAATAA-AATGATATTAGTAT
* *
66487608 AAATTGCAAAATATAAAATTATATTAGTA
1 AAATTGCAAAAAATAAAATGATATTAGTA
66487637 ACTAATAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (30 bp):
AAATTGCAAAAAATAAAATGATATTAGTAT
Found at i:66490052 original size:16 final size:16
Alignment explanation
Indices: 66490031--66490062 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66490021 AATAAACAAG
*
66490031 TAAAGACTTTTAAATT
1 TAAAGACTATTAAATT
66490047 TAAAGACTATTAAATT
1 TAAAGACTATTAAATT
66490063 CTAAGGTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
TAAAGACTATTAAATT
Found at i:66496215 original size:48 final size:48
Alignment explanation
Indices: 66495981--66496224 Score: 232
Period size: 48 Copynumber: 5.1 Consensus size: 48
66495971 ATATGGCATC
* * * *
66495981 GGCATCGGCATCGATATGTGATCCCATGTAAGACCATGTTTGAGACAT
1 GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
*
66496029 GGCATTGGCATCGT-TATGTGATCCCATGTAAGACCATGTTTGGGACAT
1 GGCATTGGCATC-TATATGTGATCCCATGTAAGACCATGTCTGGGACAT
* * * * *
66496077 GGCATTGGCATCGATATGAGAACATCGTGTAAGACCATAG-CTGGG-CTAT
1 GGCATTGGCATCTATATGTGATC-CCATGTAAGACCAT-GTCTGGGAC-AT
* * * *
66496126 CGGC-TTCG-A--TATGTGTGATCCCATGAAAGACAATGTCTGGGACAT
1 -GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
* * * *
66496171 GGCATTGGCATCTATAAGTGGTCCCATGTAAGACCATATCTGGGATAT
1 GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
66496219 GGCATT
1 GGCATT
66496225 TGCACCCTAC
Statistics
Matches: 158, Mismatches: 26, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
44 4 0.03
45 20 0.13
46 9 0.06
48 100 0.63
49 21 0.13
50 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (48 bp):
GGCATTGGCATCTATATGTGATCCCATGTAAGACCATGTCTGGGACAT
Found at i:66498814 original size:17 final size:17
Alignment explanation
Indices: 66498775--66498828 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
66498765 TGGATTACTG
*
66498775 AAATCAAATGATATAGAGC
1 AAATAAAATGATAT-G-GC
*
66498794 -AATAAATTGATATGGC
1 AAATAAAATGATATGGC
*
66498810 AAATAAAATGATGTGGC
1 AAATAAAATGATATGGC
66498827 AA
1 AA
66498829 TTCACAGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.07
17 17 0.57
18 11 0.37
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.24
Consensus pattern (17 bp):
AAATAAAATGATATGGC
Found at i:66499668 original size:16 final size:16
Alignment explanation
Indices: 66499632--66499671 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
66499622 CTCACGCTAA
**
66499632 TTCTGTTTTCTCTTTTT
1 TTCT-TTTTCTCTTTGC
66499649 TTCTTTTTCTCTTTGC
1 TTCTTTTTCTCTTTGC
66499665 TTCTTTT
1 TTCTTTT
66499672 ATTGGGTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.00, C:0.20, G:0.05, T:0.75
Consensus pattern (16 bp):
TTCTTTTTCTCTTTGC
Found at i:66502330 original size:14 final size:14
Alignment explanation
Indices: 66502311--66502340 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
66502301 CACTATGTGT
66502311 GTGAGTATTCCCGA
1 GTGAGTATTCCCGA
*
66502325 GTGAGTATTCTCGA
1 GTGAGTATTCCCGA
66502339 GT
1 GT
66502341 ATCTGATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (14 bp):
GTGAGTATTCCCGA
Found at i:66509996 original size:61 final size:61
Alignment explanation
Indices: 66509921--66510042 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
66509911 ATGATCGTTT
66509921 CGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTACATAATTTATTAATTATTTA
1 CGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTACATAATTTATTAATTATTTA
*
66509982 CGTTACTTTCCTATGAAAATATATTCATCAAGGTTCATTTACATAATTTATTAATTATTTA
1 CGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTACATAATTTATTAATTATTTA
66510043 ATTCCAATCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (61 bp):
CGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCATTTACATAATTTATTAATTATTTA
Found at i:66510864 original size:37 final size:37
Alignment explanation
Indices: 66510814--66510892 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66510804 TTATTACGAA
* *
66510814 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
* *
66510851 GTCTTACCCGGACAAAATTTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
66510888 GTCTT
1 GTCTT
66510893 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:66511089 original size:47 final size:47
Alignment explanation
Indices: 66511011--66511268 Score: 390
Period size: 47 Copynumber: 5.4 Consensus size: 47
66511001 CCCTTCGGGA
* * * * * * *
66511011 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66511058 CCTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511105 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511152 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511201 CTTATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 C-T-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511250 CTTATCACATATATACACT
1 CTTATCACATATATACACT
66511269 GTCTTGGCTG
Statistics
Matches: 194, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
47 106 0.55
48 1 0.01
49 80 0.41
50 1 0.01
51 6 0.03
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66511185 original size:49 final size:49
Alignment explanation
Indices: 66511011--66511264 Score: 360
Period size: 49 Copynumber: 5.3 Consensus size: 49
66511001 CCCTTCGGGA
* * * * * *
66511011 CTTATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66511058 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511105 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511152 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66511201 CTTAT-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCA-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66511250 CTTATCACATATATA
1 CTTATCACATATATA
66511265 CACTGTCTTG
Statistics
Matches: 187, Mismatches: 14, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
46 1 0.01
47 87 0.47
48 1 0.01
49 97 0.52
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66514856 original size:40 final size:40
Alignment explanation
Indices: 66514823--66515001 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
66514813 TCTTCGAGGT
* * *
66514823 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
66514863 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
66514903 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
66514943 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
66514983 TTAGCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
66515002 CTCAATTCTC
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:66515171 original size:39 final size:39
Alignment explanation
Indices: 66515117--66515196 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
66515107 CCATAACCAC
*
66515117 ATACAAAAATCACATTTATAGTCATAACACTCTTTCAAA
1 ATACAAAAATCACATTAATAGTCATAACACTCTTTCAAA
66515156 ATACAAAAATCACATTAATAGTCATAACACTCTTTCAAA
1 ATACAAAAATCACATTAATAGTCATAACACTCTTTCAAA
66515195 AT
1 AT
66515197 TGCATCACTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (39 bp):
ATACAAAAATCACATTAATAGTCATAACACTCTTTCAAA
Found at i:66521919 original size:24 final size:25
Alignment explanation
Indices: 66521876--66521984 Score: 87
Period size: 25 Copynumber: 4.4 Consensus size: 25
66521866 CCATTAGATA
* *
66521876 TTACCGATTCTTAGCTCGTATGAGC
1 TTACCGATTCGTAGCTCGTAAGAGC
66521901 TTACCGATT-GTAGCTCGTAAGAGC
1 TTACCGATTCGTAGCTCGTAAGAGC
* ** ** *
66521925 TTATCGATTCCCAGCTCACATGAGC
1 TTACCGATTCGTAGCTCGTAAGAGC
* * *
66521950 TTACTGATTTC-CAGCTCGTGAGAGC
1 TTACCGA-TTCGTAGCTCGTAAGAGC
*
66521975 ATACCGATTC
1 TTACCGATTC
66521985 ATACCTCATC
Statistics
Matches: 66, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
24 24 0.36
25 39 0.59
26 3 0.05
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (25 bp):
TTACCGATTCGTAGCTCGTAAGAGC
Found at i:66521974 original size:25 final size:25
Alignment explanation
Indices: 66521888--66521983 Score: 90
Period size: 25 Copynumber: 3.9 Consensus size: 25
66521878 ACCGATTCTT
66521888 AGCTCGTATGAGCTTACCGATTGT--
1 AGCTCGTATGAGCTTACCGATT-TCC
* * *
66521912 AGCTCGTAAGAGCTTATCGATTCCC
1 AGCTCGTATGAGCTTACCGATTTCC
** *
66521937 AGCTCACATGAGCTTACTGATTTCC
1 AGCTCGTATGAGCTTACCGATTTCC
*
66521962 AGCTCGTGA-GAGCATACCGATT
1 AGCTCGT-ATGAGCTTACCGATT
66521984 CATACCTCAT
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
24 20 0.36
25 35 0.62
26 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCGATTTCC
Found at i:66526325 original size:40 final size:40
Alignment explanation
Indices: 66526281--66526624 Score: 520
Period size: 40 Copynumber: 8.7 Consensus size: 40
66526271 GCTCCTCGTT
* *
66526281 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
66526321 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66526361 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66526401 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66526441 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66526481 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
66526521 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
66526560 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
66526601 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
66526625 CAGCATTCAA
Statistics
Matches: 287, Mismatches: 11, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
38 2 0.01
39 49 0.17
40 227 0.79
41 9 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66530598 original size:28 final size:28
Alignment explanation
Indices: 66530558--66530661 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
66530548 ATTGCATGAC
*
66530558 TATGAAAGTGATTGGGCCTGACGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
66530586 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * * *
66530614 TATGAATGTGATTTGGTCCTAATGGGTCA
1 TATGAAAGTGA-TTGGGCCTGATGGGCCA
* *
66530643 TATGAATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
66530662 AAAGGGGCCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.65
29 24 0.35
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:66530639 original size:29 final size:28
Alignment explanation
Indices: 66530558--66530678 Score: 134
Period size: 28 Copynumber: 4.2 Consensus size: 28
66530548 ATTGCATGAC
* * *
66530558 TATGAAAGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
66530586 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
66530614 TATGAATGTGATTTGGTCCTAATGGGTCA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
* *
66530643 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
66530672 AATGAAT
1 TATGAAT
66530679 AGGTATGGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.54
29 37 0.46
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:66533802 original size:40 final size:40
Alignment explanation
Indices: 66533708--66533852 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
66533698 TACTCGAATG
*
66533708 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
66533749 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
66533789 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
66533829 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
66533853 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:66559677 original size:20 final size:20
Alignment explanation
Indices: 66559652--66559691 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
66559642 TGGTAGTTGT
66559652 GTTTCTACAGCAGTTACTTG
1 GTTTCTACAGCAGTTACTTG
66559672 GTTTCTACAGCAGTTACTTG
1 GTTTCTACAGCAGTTACTTG
66559692 TTCCTCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (20 bp):
GTTTCTACAGCAGTTACTTG
Found at i:66562604 original size:12 final size:13
Alignment explanation
Indices: 66562587--66562615 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
66562577 CTCATACATG
66562587 AATAAATAAA-GC
1 AATAAATAAATGC
66562599 AATAAATAAATGC
1 AATAAATAAATGC
66562612 AATA
1 AATA
66562616 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:66580946 original size:27 final size:26
Alignment explanation
Indices: 66580908--66581155 Score: 228
Period size: 27 Copynumber: 9.2 Consensus size: 26
66580898 GGTCGTTAAG
66580908 ACCCCTGGTTTGTAAAATTATCGAAAT
1 ACCCCTGGTTTGTAAAATTA-CGAAAT
66580935 ACCCCTGGTTTGTAAAATTACCGAAAT
1 ACCCCTGGTTTGTAAAATTA-CGAAAT
* *
66580962 ACCCCT-TTTTGTAAAATTACTAAAAT
1 ACCCCTGGTTTGTAAAATTAC-GAAAT
** * *
66580988 ACCCCCAGTTTATAAAATTACCAAAAT
1 ACCCCTGGTTTGTAAAATTA-CGAAAT
* * *
66581015 ACCCCTAGATTATAAAATTACTGAAAT
1 ACCCCTGGTTTGTAAAATTAC-GAAAT
* * *
66581042 ACCCTTGATTTGTAAAGTTACGAAAAT
1 ACCCCTGGTTTGTAAAATTACG-AAAT
** * *
66581069 ACCCCAAGTTTGTAAATTTATCAAAAT
1 ACCCCTGGTTTGTAAAATTA-CGAAAT
* *
66581096 ACCCCCGGTTTGTAAAATTATCGAAAC
1 ACCCCTGGTTTGTAAAATTA-CGAAAT
* *
66581123 ACCCCCGATTTGTAAAATTACCGAAAT
1 ACCCCTGGTTTGTAAAATTA-CGAAAT
66581150 ACCCCT
1 ACCCCT
66581156 ATAGGGTAAA
Statistics
Matches: 185, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
25 1 0.01
26 23 0.12
27 159 0.86
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (26 bp):
ACCCCTGGTTTGTAAAATTACGAAAT
Found at i:66581100 original size:81 final size:81
Alignment explanation
Indices: 66580915--66581154 Score: 290
Period size: 81 Copynumber: 3.0 Consensus size: 81
66580905 AAGACCCCTG
* *
66580915 GTTTGTAAAATTATCGAAATACCCCTGGTTTGTAAAATTACCGAAATACCCCTT--TTTGTAAAA
1 GTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACTGAAATA-CCCTTGATTTGTAAAA
* *
66580978 TTACTAAAATACCCCCA
65 TTACGAAAATACCCCAA
* * * * * *
66580995 GTTTATAAAATTACCAAAATACCCCTAGATTATAAAATTACTGAAATACCCTTGATTTGTAAAGT
1 GTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTTGATTTGTAAAAT
66581060 TACGAAAATACCCCAA
66 TACGAAAATACCCCAA
* * * **
66581076 GTTTGTAAATTTATCAAAATACCCCCGGTTTGTAAAATTA-TCGAAACACCCCCGATTTGTAAAA
1 GTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACT-GAAATACCCTTGATTTGTAAAA
66581140 TTACCG-AAATACCCC
65 TTA-CGAAAATACCCC
66581155 TATAGGGTAA
Statistics
Matches: 135, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
79 5 0.04
80 42 0.31
81 86 0.64
82 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
GTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTTGATTTGTAAAAT
TACGAAAATACCCCAA
Found at i:66581260 original size:34 final size:34
Alignment explanation
Indices: 66581222--66581286 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
66581212 TTTGATTGAT
* *
66581222 TTGACTGTGATTGTATGATTGTAATTTAACTAAC
1 TTGACTGTGATTGTACGACTGTAATTTAACTAAC
*
66581256 TTGACTGTGATTGTACGACTGTGATTTAACT
1 TTGACTGTGATTGTACGACTGTAATTTAACT
66581287 GATATACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (34 bp):
TTGACTGTGATTGTACGACTGTAATTTAACTAAC
Found at i:66584646 original size:46 final size:47
Alignment explanation
Indices: 66584442--66584669 Score: 209
Period size: 46 Copynumber: 4.9 Consensus size: 47
66584432 TTATTTGTGT
* * * *
66584442 GCTAGTATAAGACATGTTTGGGACATGCATCGGCCAC-ATTATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * ** * ** *
66584488 GCCAATGTAA-CCACCTCTGGGACATGGCATTGGAATTGAGATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
* * *
66584534 GCTAGTGTAAGACATGTCTGCGACATGTATCAGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
*
66584580 GCTAGTGTGAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
* *
66584626 GCTAGTGTAAGACATGTCTGGGATAAGCATCGG-CTACGAGATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
66584670 GTTAGTGTAA
Statistics
Matches: 145, Mismatches: 32, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
45 13 0.09
46 119 0.82
47 13 0.09
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:66584702 original size:92 final size:92
Alignment explanation
Indices: 66584507--66584702 Score: 202
Period size: 92 Copynumber: 2.1 Consensus size: 92
66584497 ACCACCTCTG
* * * *
66584507 GGACATGGCATTGGAATTGAGATGAGAGCTAGTGTAAGACATGTCTGCGACATGTATCAGCCTCG
1 GGACATGGCATCGGAATCGAGATGAGAGCTAGTGTAAGACATGTCTGCGACAAGCATCAGCCTCG
* * * *
66584572 AGATGTAAGCTAGTGTGAGACATGTCTG
66 AGATGT-AGCTAGTGTAAAACATGCCTA
** * * *
66584600 GGACAT-GCATCGGCCTCGAGATGTA-AGCTAGTGTAAGACATGTCTGGGATAAGCATC-GGCTA
1 GGACATGGCATCGGAATCGAGATG-AGAGCTAGTGTAAGACATGTCTGCGACAAGCATCAGCCT-
*
66584662 CGAGATGT-GTTAGTGTAAAACCATGCCTA
64 CGAGATGTAGCTAGTGTAAAA-CATGCCTA
66584691 GGACATGGCATC
1 GGACATGGCATC
66584703 AGCACGTATA
Statistics
Matches: 85, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
90 9 0.11
91 15 0.18
92 54 0.64
93 7 0.08
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (92 bp):
GGACATGGCATCGGAATCGAGATGAGAGCTAGTGTAAGACATGTCTGCGACAAGCATCAGCCTCG
AGATGTAGCTAGTGTAAAACATGCCTA
Found at i:66586180 original size:39 final size:40
Alignment explanation
Indices: 66586135--66586302 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
66586125 CGGGGTTTAG
* * *
66586135 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
66586174 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
66586214 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
66586254 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
66586295 CCGGATAT
1 CCGGATAT
66586303 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:66586285 original size:41 final size:40
Alignment explanation
Indices: 66586158--66586302 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
66586148 CTCGCACAAG
* * * * *
66586158 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
66586198 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
66586238 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
66586279 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
66586303 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:66589404 original size:22 final size:23
Alignment explanation
Indices: 66589379--66589473 Score: 74
Period size: 24 Copynumber: 4.2 Consensus size: 23
66589369 CTTAGGTGGC
66589379 ATTCTGA-TGTCCTTTATGGTGT
1 ATTCTGATTGTCCTTTATGGTGT
* *
66589401 ATTCTGATTTTGCCCTTATGGTGT
1 ATTCTGATTGT-CCTTTATGGTGT
*
66589425 ACTT-TGATTTGGCCTTTAT-G-GT
1 A-TTCTGA-TTGTCCTTTATGGTGT
* * *
66589447 ATTCTGCTAG-CCTTTATGGCGT
1 ATTCTGATTGTCCTTTATGGTGT
66589469 ATTCT
1 ATTCT
66589474 TAGGCCATCT
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
20 7 0.12
21 5 0.08
22 19 0.32
23 3 0.05
24 21 0.36
25 4 0.07
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (23 bp):
ATTCTGATTGTCCTTTATGGTGT
Found at i:66589423 original size:24 final size:24
Alignment explanation
Indices: 66589392--66589446 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
66589382 CTGATGTCCT
*
66589392 TTATGGTGTA-TTCTGATTTTGCCC
1 TTATGGTGTACTT-TGATTTGGCCC
*
66589416 TTATGGTGTACTTTGATTTGGCCT
1 TTATGGTGTACTTTGATTTGGCCC
66589440 TTATGGT
1 TTATGGT
66589447 ATTCTGCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.13, C:0.13, G:0.24, T:0.51
Consensus pattern (24 bp):
TTATGGTGTACTTTGATTTGGCCC
Found at i:66595948 original size:22 final size:22
Alignment explanation
Indices: 66595884--66595948 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
66595874 TGTCTTGTCG
*
66595884 ACGACGTTGAGTCC-TCCTGTCT
1 ACGACGTTGAG-CCGTCCTGTTT
* *
66595906 ACGACATTGAGTCGTCCTGTTT
1 ACGACGTTGAGCCGTCCTGTTT
*
66595928 ACGGCGTTGAGCCGTCCTGTT
1 ACGACGTTGAGCCGTCCTGTT
66595949 GACTTAGTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
21 1 0.03
22 35 0.97
ACGTcount: A:0.14, C:0.28, G:0.26, T:0.32
Consensus pattern (22 bp):
ACGACGTTGAGCCGTCCTGTTT
Found at i:66596118 original size:27 final size:27
Alignment explanation
Indices: 66596087--66596139 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
66596077 GCATCTGATA
*
66596087 CTGATTCTG-TACTAGGCTTAGGCCCAC
1 CTGATTCTGTTAATAGGC-TAGGCCCAC
66596114 CTGATTCTGTTAATAGGCTAGGCCCA
1 CTGATTCTGTTAATAGGCTAGGCCCA
66596140 ACTGTTACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTTAATAGGCTAGGCCCAC
Found at i:66611228 original size:22 final size:23
Alignment explanation
Indices: 66611203--66611297 Score: 74
Period size: 24 Copynumber: 4.2 Consensus size: 23
66611193 CTTAGGTGGC
66611203 ATTCTGA-TGTCCTTTATGGTGT
1 ATTCTGATTGTCCTTTATGGTGT
* *
66611225 ATTCTGATTTTGCCCTTATGGTGT
1 ATTCTGATTGT-CCTTTATGGTGT
*
66611249 ACTT-TGATTTGGCCTTTAT-G-GT
1 A-TTCTGA-TTGTCCTTTATGGTGT
* * *
66611271 ATTCTGCTAG-CCTTTATGGCGT
1 ATTCTGATTGTCCTTTATGGTGT
66611293 ATTCT
1 ATTCT
66611298 TAGGCCATCT
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
20 7 0.12
21 5 0.08
22 19 0.32
23 3 0.05
24 21 0.36
25 4 0.07
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (23 bp):
ATTCTGATTGTCCTTTATGGTGT
Found at i:66611247 original size:24 final size:24
Alignment explanation
Indices: 66611216--66611270 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
66611206 CTGATGTCCT
*
66611216 TTATGGTGTA-TTCTGATTTTGCCC
1 TTATGGTGTACTT-TGATTTGGCCC
*
66611240 TTATGGTGTACTTTGATTTGGCCT
1 TTATGGTGTACTTTGATTTGGCCC
66611264 TTATGGT
1 TTATGGT
66611271 ATTCTGCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.13, C:0.13, G:0.24, T:0.51
Consensus pattern (24 bp):
TTATGGTGTACTTTGATTTGGCCC
Found at i:66617772 original size:22 final size:22
Alignment explanation
Indices: 66617708--66617772 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
66617698 TGTCTTGTCG
*
66617708 ACGACGTTGAGTCC-TCCTGTCT
1 ACGACGTTGAG-CCGTCCTGTTT
* *
66617730 ACGACATTGAGTCGTCCTGTTT
1 ACGACGTTGAGCCGTCCTGTTT
*
66617752 ACGGCGTTGAGCCGTCCTGTT
1 ACGACGTTGAGCCGTCCTGTT
66617773 GACTTAGTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
21 1 0.03
22 35 0.97
ACGTcount: A:0.14, C:0.28, G:0.26, T:0.32
Consensus pattern (22 bp):
ACGACGTTGAGCCGTCCTGTTT
Found at i:66617942 original size:27 final size:27
Alignment explanation
Indices: 66617911--66617963 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
66617901 GCATCTGATA
*
66617911 CTGATTCTG-TACTAGGCTTAGGCCCAC
1 CTGATTCTGTTAATAGGC-TAGGCCCAC
66617938 CTGATTCTGTTAATAGGCTAGGCCCA
1 CTGATTCTGTTAATAGGCTAGGCCCA
66617964 ACTGTTACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTTAATAGGCTAGGCCCAC
Found at i:66623162 original size:42 final size:43
Alignment explanation
Indices: 66623106--66623208 Score: 122
Period size: 42 Copynumber: 2.4 Consensus size: 43
66623096 TGATTTATGT
66623106 GTAAGACCTTGTCTGGGACA-TCGGCATC-ATATATGAGTT-CAA
1 GTAAGACCTTGTCTGGGACAGT-GGCATCGATATATGA-TTACAA
* * *
66623148 GTAAGACCTTGTCTGGGATAGTGGCATCGATATGTGATTACAT
1 GTAAGACCTTGTCTGGGACAGTGGCATCGATATATGATTACAA
**
66623191 GTAAGACCACGTCTGGGA
1 GTAAGACCTTGTCTGGGA
66623209 TGTTGGCATT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
GTAAGACCTTGTCTGGGACAGTGGCATCGATATATGATTACAA
Found at i:66623207 original size:43 final size:44
Alignment explanation
Indices: 66623061--66623217 Score: 146
Period size: 43 Copynumber: 3.6 Consensus size: 44
66623051 TGTGTTTTTG
* * * **
66623061 TGTAAGGCCATGTCTGGGATGCTGGCATCGATTTGTGATTTATG
1 TGTAAGACCATGTCTGGGATGCTGGCATCGATATGTGAGTTACA
* *
66623105 TGTAAGACCTTGTCTGGGA--CATCGGCATC-ATATATGAGTT-CA
1 TGTAAGACCATGTCTGGGATGC-T-GGCATCGATATGTGAGTTACA
* *
66623147 AGTAAGACCTTGTCTGGGATAG-TGGCATCGATATGTGA-TTACA
1 TGTAAGACCATGTCTGGGAT-GCTGGCATCGATATGTGAGTTACA
* *
66623190 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCATGTCTGGGATGCTGGCAT
66623218 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
42 28 0.30
43 42 0.45
44 23 0.25
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGATGCTGGCATCGATATGTGAGTTACA
Found at i:66628359 original size:93 final size:93
Alignment explanation
Indices: 66628257--66628437 Score: 272
Period size: 93 Copynumber: 1.9 Consensus size: 93
66628247 TTAGGATTTT
*** *
66628257 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACACGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
*
66628322 TGCATATATGTGATAAGGCCGAAGGCCA
66 TGCATATATGTGATAAAGCCGAAGGCCA
* * * *
66628350 ATGTGATGAATGTGAGCACGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAACACGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
*
66628415 TGCATATATGTGGTAAAGCCGAA
66 TGCATATATGTGATAAAGCCGAA
66628438 TGGCTATTGT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (93 bp):
ATGTGATGAATGTGAACACGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
TGCATATATGTGATAAAGCCGAAGGCCA
Found at i:66628373 original size:46 final size:47
Alignment explanation
Indices: 66628257--66628545 Score: 273
Period size: 47 Copynumber: 6.1 Consensus size: 47
66628247 TTAGGATTTT
** *
66628257 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66628304 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAA-GGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
66628350 ATGTGATGAATGTGAGCACGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
66628397 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** * * * *
66628444 TTGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * *
66628492 ATGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
66628540 ATGTGA
1 ATGTGA
66628546 AATATGTATG
Statistics
Matches: 217, Mismatches: 21, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
46 43 0.20
47 89 0.41
48 78 0.36
49 3 0.01
50 4 0.02
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:66628476 original size:48 final size:48
Alignment explanation
Indices: 66628419--66628651 Score: 351
Period size: 48 Copynumber: 4.8 Consensus size: 48
66628409 TGAACATGCA
*
66628419 TATATGTGGTAAAGCCGAATGGCTATTGTGAAAAATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
66628467 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
* *
66628515 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
* * * *
66628563 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGAAATG
* *
66628613 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTA
66628652 GGCGATGTGC
Statistics
Matches: 169, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
47 1 0.01
48 126 0.75
50 41 0.24
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
Found at i:66628905 original size:37 final size:37
Alignment explanation
Indices: 66628797--66628905 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
66628787 GGAAATATAT
*
66628797 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
66628834 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
66628871 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
66628906 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:66630498 original size:40 final size:40
Alignment explanation
Indices: 66630175--66630486 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
66630165 GAGAATTGAG
* *
66630175 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66630215 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66630255 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
66630295 AGTGACGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
66630335 AGTGACGTATCCGGGCTGAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
66630375 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
66630415 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
66630455 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
66630487 ATCATGCTGG
Statistics
Matches: 254, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:66633204 original size:27 final size:27
Alignment explanation
Indices: 66633173--66633350 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66633163 TAAATTGTAC
66633173 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66633200 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66633226 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66633254 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66633282 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66633309 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66633336 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66633351 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66633287 original size:82 final size:81
Alignment explanation
Indices: 66633174--66633329 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66633164 AAATTGTACA
* *
66633174 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66633238 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66633255 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66633320 TGCGAGTTGA
65 TGCGAATTGA
66633330 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66633341 original size:82 final size:81
Alignment explanation
Indices: 66633170--66633350 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
66633160 GATTAAATTG
* *
66633170 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66633235 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
66633251 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66633315 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66633333 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66633351 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66641396 original size:27 final size:27
Alignment explanation
Indices: 66641365--66641542 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66641355 TAAATTGTGC
66641365 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66641392 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66641418 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66641446 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66641474 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66641501 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66641528 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66641543 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66641479 original size:82 final size:81
Alignment explanation
Indices: 66641366--66641521 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66641356 AAATTGTGCA
* *
66641366 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66641430 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66641447 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66641512 TGCGAGTTGA
65 TGCGAATTGA
66641522 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66641533 original size:82 final size:81
Alignment explanation
Indices: 66641364--66641542 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
66641354 TTAAATTGTG
* *
66641364 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
66641429 GTGCGAATTGACCATG
66 GTGCGAATTGACCATA
* ** *
66641445 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAA
1 CAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
* **
66641509 GTGTGCGAGTTGATTATA
64 GTGTGCGAATTGACCATA
* *
66641527 TAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
66641543 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATA
Found at i:66643571 original size:28 final size:28
Alignment explanation
Indices: 66643531--66643589 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
66643521 GTATATATTT
66643531 AAAATTCTTAAGTATAAACACACAATTC
1 AAAATTCTTAAGTATAAACACACAATTC
66643559 AAAATTCTTAAGTATAAACACACAATTC
1 AAAATTCTTAAGTATAAACACACAATTC
66643587 AAA
1 AAA
66643590 CATAAGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.03, T:0.27
Consensus pattern (28 bp):
AAAATTCTTAAGTATAAACACACAATTC
Found at i:66646897 original size:29 final size:30
Alignment explanation
Indices: 66646832--66646897 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
66646822 ATTTTAAAGT
* *
66646832 AAATAATATATATATACATGTAAAAGTATG
1 AAATAATATATATATAAATGTAAAAGTATA
*
66646862 AAA-AATATATATATAAAT-TTAAAGTA-A
1 AAATAATATATATATAAATGTAAAAGTATA
66646889 ACAATAATA
1 A-AATAATA
66646898 AAAAAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.03
28 9 0.29
29 18 0.58
30 3 0.10
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (30 bp):
AAATAATATATATATAAATGTAAAAGTATA
Found at i:66647724 original size:40 final size:40
Alignment explanation
Indices: 66647669--66647749 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
66647659 CCGCTCCTCC
* *
66647669 ACCGTAGACGGTGGTCGGGGAGACGCAAAATGGTCCCCTT
1 ACCGTAGACGGTGGTCGGAGAGAAGCAAAATGGTCCCCTT
66647709 ACCGTAGACGGTGGTCGGAGAGAAGCAAAATGGTCCCCTT
1 ACCGTAGACGGTGGTCGGAGAGAAGCAAAATGGTCCCCTT
66647749 A
1 A
66647750 GCCTCGTTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.33, T:0.17
Consensus pattern (40 bp):
ACCGTAGACGGTGGTCGGAGAGAAGCAAAATGGTCCCCTT
Found at i:66649395 original size:12 final size:12
Alignment explanation
Indices: 66649375--66649405 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
66649365 TCATTACCAC
*
66649375 CATTGTCATTGT
1 CATTATCATTGT
66649387 CATTATCATTGT
1 CATTATCATTGT
66649399 CATTATC
1 CATTATC
66649406 TTCCTCGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (12 bp):
CATTATCATTGT
Found at i:66650837 original size:103 final size:103
Alignment explanation
Indices: 66650658--66650865 Score: 407
Period size: 103 Copynumber: 2.0 Consensus size: 103
66650648 TATTATTCTC
*
66650658 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAGGCTCTCTATTTATAATTGAG
1 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAAGCTCTCTATTTATAATTGAG
66650723 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
66 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
66650761 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAAGCTCTCTATTTATAATTGAG
1 TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAAGCTCTCTATTTATAATTGAG
66650826 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
66 CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
66650864 TA
1 TA
66650866 GACGAGATGA
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (103 bp):
TACTAAATAATGGAATACAATGGATGATTTACAATTAAGAGGGAAGCTCTCTATTTATAATTGAG
CTCTCCTAAATCTAACGGTCTAGCTACATTTACATCGA
Found at i:66651490 original size:86 final size:86
Alignment explanation
Indices: 66651385--66651735 Score: 693
Period size: 86 Copynumber: 4.1 Consensus size: 86
66651375 AAATTTTACT
66651385 AATGTCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTAT
1 AATG-CTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTAT
66651450 CTTTAGATTGATAAATGCATAA
65 CTTTAGATTGATAAATGCATAA
66651472 AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
1 AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
66651537 TTTAGATTGATAAATGCATAA
66 TTTAGATTGATAAATGCATAA
66651558 AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
1 AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
66651623 TTTAGATTGATAAATGCATAA
66 TTTAGATTGATAAATGCATAA
66651644 AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
1 AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
66651709 TTTAGATTGATAAATGCATAA
66 TTTAGATTGATAAATGCATAA
66651730 AATGCT
1 AATGCT
66651736 GGAGGGTAAG
Statistics
Matches: 264, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
86 260 0.98
87 4 0.02
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.40
Consensus pattern (86 bp):
AATGCTATTTGCCTAATTAGATTGAAGATTATAGTGATTGAATTGACTTGAATGATTATGGTATC
TTTAGATTGATAAATGCATAA
Found at i:66661157 original size:2 final size:2
Alignment explanation
Indices: 66661150--66661177 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
66661140 GGGAGGAGGC
66661150 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
66661178 GATTAGGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:66662006 original size:11 final size:12
Alignment explanation
Indices: 66661981--66662010 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
66661971 ATGAAGTTAG
66661981 TCAAACATATTT
1 TCAAACATATTT
66661993 TCAAACAT-TTT
1 TCAAACATATTT
66662004 TCAAACA
1 TCAAACA
66662011 GGTTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (12 bp):
TCAAACATATTT
Found at i:66664545 original size:18 final size:18
Alignment explanation
Indices: 66664522--66664556 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
66664512 TGATGATATC
66664522 GATATTGATGCTAGTGAT
1 GATATTGATGCTAGTGAT
66664540 GATATTGATGCTAGTGA
1 GATATTGATGCTAGTGA
66664557 CGCCATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.37
Consensus pattern (18 bp):
GATATTGATGCTAGTGAT
Found at i:66664564 original size:18 final size:18
Alignment explanation
Indices: 66664525--66664566 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
66664515 TGATATCGAT
* *
66664525 ATTGATGCTAGTGATGAT
1 ATTGATGCTAGTGACGAC
*
66664543 ATTGATGCTAGTGACGCC
1 ATTGATGCTAGTGACGAC
66664561 ATTGAT
1 ATTGAT
66664567 CGTGACCTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (18 bp):
ATTGATGCTAGTGACGAC
Found at i:66664809 original size:18 final size:18
Alignment explanation
Indices: 66664769--66664811 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
66664759 GTTCAAGATG
66664769 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
66664787 CAATTAA-TTAAATTTATT
1 TAATTAATTTAAAATT-TT
66664805 TAATTAA
1 TAATTAA
66664812 AAACTTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:66667482 original size:20 final size:19
Alignment explanation
Indices: 66667459--66667496 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
66667449 TCACATTTTG
66667459 TAAACTATTTTTTTTACATA
1 TAAA-TATTTTTTTTACATA
*
66667479 TAAATGTTTTTTTTACAT
1 TAAATATTTTTTTTACAT
66667497 TGGTATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (19 bp):
TAAATATTTTTTTTACATA
Found at i:66667748 original size:26 final size:24
Alignment explanation
Indices: 66667708--66667782 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 24
66667698 TTATTTTATT
* * *
66667708 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
66667732 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
*
66667758 AAAT-AA-ATA-TTAAAAAAATAA
1 AAATAAATATATTTAAAAACATAA
66667779 AAAT
1 AAAT
66667783 GATACTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
21 15 0.33
22 3 0.07
23 2 0.04
25 8 0.18
26 17 0.38
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.27
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:66667773 original size:22 final size:21
Alignment explanation
Indices: 66667738--66667782 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
66667728 ATAATAAATC
* *
66667738 AAATATAT-TTAAAAACATAA
1 AAATAAATATTAAAAAAATAA
66667758 AAATAAATATTAAAAAAATAA
1 AAATAAATATTAAAAAAATAA
66667779 AAAT
1 AAAT
66667783 GATACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATAAATATTAAAAAAATAA
Found at i:66667791 original size:20 final size:21
Alignment explanation
Indices: 66667747--66667792 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
66667737 CAAATATATT
* *
66667747 TAAAAACATAAAAATAAATAT
1 TAAAAAAATAAAAATAAATAC
*
66667768 TAAAAAAATAAAAAT-GATAC
1 TAAAAAAATAAAAATAAATAC
66667788 TAAAA
1 TAAAA
66667793 TAATTCTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAAAAATAAAAATAAATAC
Found at i:66668043 original size:7 final size:7
Alignment explanation
Indices: 66668031--66668066 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
66668021 TAAATCAAGG
66668031 TTTGTAA
1 TTTGTAA
66668038 TTTGTAA
1 TTTGTAA
66668045 TTTGTAA
1 TTTGTAA
66668052 TTTGTAA
1 TTTGTAA
66668059 TTTGTAA
1 TTTGTAA
66668066 T
1 T
66668067 ATTTGTTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (7 bp):
TTTGTAA
Found at i:66669959 original size:63 final size:63
Alignment explanation
Indices: 66669860--66670111 Score: 495
Period size: 63 Copynumber: 4.0 Consensus size: 63
66669850 ATTAAGGTTC
*
66669860 ATTTTCATTCCTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
1 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
66669923 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
1 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
66669986 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
1 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
66670049 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
1 ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
66670112 CAAATAGTTG
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 188 1.00
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.46
Consensus pattern (63 bp):
ATTTTCATTCTTAATTTTGAACTAATGTTATACCTTCAACATTAGCATAATTTTAAATACTTA
Found at i:66678467 original size:3 final size:3
Alignment explanation
Indices: 66678461--66678521 Score: 54
Period size: 3 Copynumber: 20.3 Consensus size: 3
66678451 TATTATCCAA
** *
66678461 ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT -TGCT GCT ATT ATT AGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT--T ATT ATT ATT ATT
*
66678506 ATT ATT ATT TTT ATT A
1 ATT ATT ATT ATT ATT A
66678522 CTACCACTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 3 0.06
3 43 0.91
4 1 0.02
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:66680432 original size:20 final size:18
Alignment explanation
Indices: 66680368--66680433 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 18
66680358 TAGATTTTTC
*
66680368 TTTTTAGAATTTTTTTTAAGT
1 TTTTTA-AA-TTTTTTT-AGA
66680389 TTTTATAAATTTTTTTAGA
1 TTTT-TAAATTTTTTTAGA
*
66680408 ATTTTAAATATTTTTTATGA
1 TTTTTAAAT-TTTTTTA-GA
66680428 TTTTTA
1 TTTTTA
66680434 GTAAAAAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 5 0.13
19 12 0.31
20 14 0.36
21 6 0.15
22 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
TTTTTAAATTTTTTTAGA
Found at i:66683513 original size:17 final size:17
Alignment explanation
Indices: 66683491--66683529 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
66683481 GCATCTCCAT
66683491 TTCTTCTCCTCTTCTTC
1 TTCTTCTCCTCTTCTTC
* *
66683508 TTCTTCTTCTCTTCTTT
1 TTCTTCTCCTCTTCTTC
66683525 TTCTT
1 TTCTT
66683530 TTGCTACCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCTTCTCCTCTTCTTC
Found at i:66696962 original size:31 final size:31
Alignment explanation
Indices: 66696920--66696988 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
66696910 ATACAAAATT
*
66696920 AAAATAGAAAGTTAATTTATTAGCAGAATAG
1 AAAATATAAAGTTAATTTATTAGCAGAATAG
66696951 AAAATATAAAGTTAATTTATTAGCAGAATAG
1 AAAATATAAAGTTAATTTATTAGCAGAATAG
66696982 AAAATAT
1 AAAATAT
66696989 GTGGTGGTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (31 bp):
AAAATATAAAGTTAATTTATTAGCAGAATAG
Found at i:66702770 original size:146 final size:145
Alignment explanation
Indices: 66702552--66702824 Score: 406
Period size: 146 Copynumber: 1.9 Consensus size: 145
66702542 ATTTCACGCC
* * *
66702552 GAAACTTATTACTTGCTACAACAAATTTGTTGGATAAAAGTGGCAAAATATATCCTATAATCATA
1 GAAACTTACTACTTGCTACAACAAAATTGTTGGATAAAAATGGCAAAATATATCCTATAATCATA
*
66702617 TTTATTCATTTAATATTTGATTTTTAATAAAAAAAGTATTGATAAAAATTTCAG-TGACAAGTAT
66 TTTATTCATTTAATATTTGATTTTGAAT-AAAAAAG-ATTGATAAAAATTTCAGCT-ACAAGTAT
66702681 CCTAGAATTTCAAACACT
128 CCTAGAATTTCAAACACT
* * * * *
66702699 GAAACTTACTATTTGCTACAATAAAATTGTTGGA-AAAAATGGTAAAATATATTCTTTAATCATA
1 GAAACTTACTACTTGCTACAACAAAATTGTTGGATAAAAATGGCAAAATATATCCTATAATCATA
* *
66702763 TTTATTCATTTAGTATTTGATTTTGAATAAAAAAGGTTGATAAAAATTTCAGCTACAAGTAT
66 TTTATTCATTTAATATTTGATTTTGAATAAAAAAGATTGATAAAAATTTCAGCTACAAGTAT
66702825 TCAGAATCAG
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
144 24 0.21
145 8 0.07
146 52 0.46
147 30 0.26
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (145 bp):
GAAACTTACTACTTGCTACAACAAAATTGTTGGATAAAAATGGCAAAATATATCCTATAATCATA
TTTATTCATTTAATATTTGATTTTGAATAAAAAAGATTGATAAAAATTTCAGCTACAAGTATCCT
AGAATTTCAAACACT
Found at i:66704694 original size:27 final size:27
Alignment explanation
Indices: 66704614--66704766 Score: 117
Period size: 27 Copynumber: 5.7 Consensus size: 27
66704604 TGTCACGATT
* * * * *
66704614 GACTACCTCGTGTTTATTGTCCCGGCA
1 GACTACCCCATGTTTACTGTCCCGACG
* ** * *
66704641 AACTACCCTGTGTTCACTGTCCTGACG
1 GACTACCCCATGTTTACTGTCCCGACG
*
66704668 GACTACCCCATGTTTATTGTCCCGACG
1 GACTACCCCATGTTTACTGTCCCGACG
* * * * * *
66704695 GATTATCCAATGTTTACTATTCCAACG
1 GACTACCCCATGTTTACTGTCCCGACG
* * *
66704722 GACTATCCCATGTTTACTATCCCAACG
1 GACTACCCCATGTTTACTGTCCCGACG
*
66704749 GACTATCCCATGTTTACT
1 GACTACCCCATGTTTACT
66704767 ATCTCGACAA
Statistics
Matches: 102, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.33
Consensus pattern (27 bp):
GACTACCCCATGTTTACTGTCCCGACG
Found at i:66704742 original size:14 final size:14
Alignment explanation
Indices: 66704723--66704769 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
66704713 ATTCCAACGG
66704723 ACTATCCCATGTTT
1 ACTATCCCATGTTT
* *
66704737 ACTATCCCAACG--G
1 ACTATCCC-ATGTTT
66704750 ACTATCCCATGTTT
1 ACTATCCCATGTTT
66704764 ACTATC
1 ACTATC
66704770 TCGACAAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
12 2 0.08
13 8 0.31
14 14 0.54
15 2 0.08
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.34
Consensus pattern (14 bp):
ACTATCCCATGTTT
Found at i:66704767 original size:27 final size:27
Alignment explanation
Indices: 66704665--66704769 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
66704655 CACTGTCCTG
* * * *
66704665 ACGGACTACCCCATGTTTATTGTCCCG
1 ACGGACTATCCCATGTTTACTATCCCA
* * *
66704692 ACGGATTATCCAATGTTTACTATTCCA
1 ACGGACTATCCCATGTTTACTATCCCA
66704719 ACGGACTATCCCATGTTTACTATCCCA
1 ACGGACTATCCCATGTTTACTATCCCA
66704746 ACGGACTATCCCATGTTTACTATC
1 ACGGACTATCCCATGTTTACTATC
66704770 TCGACAAACT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (27 bp):
ACGGACTATCCCATGTTTACTATCCCA
Found at i:66704780 original size:27 final size:27
Alignment explanation
Indices: 66704698--66704781 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
66704688 CCCGACGGAT
* * **
66704698 TATCCAATGTTTACTATTCCAACGGAC
1 TATCCCATGTTTACTATCCCAACAAAC
**
66704725 TATCCCATGTTTACTATCCCAACGGAC
1 TATCCCATGTTTACTATCCCAACAAAC
* *
66704752 TATCCCATGTTTACTATCTCGACAAAC
1 TATCCCATGTTTACTATCCCAACAAAC
66704779 TAT
1 TAT
66704782 ACTGGTTATC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (27 bp):
TATCCCATGTTTACTATCCCAACAAAC
Found at i:66704781 original size:54 final size:54
Alignment explanation
Indices: 66704669--66704781 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
66704659 GTCCTGACGG
* * * * * **
66704669 ACTACCCCATGTTTATTGTCCCGACGGATTATCCAATGTTTACTATTCCAACGG
1 ACTATCCCATGTTTACTATCCCAACGGACTATCCAATGTTTACTATTCCAACAA
* *
66704723 ACTATCCCATGTTTACTATCCCAACGGACTATCCCATGTTTACTA-TCTCGACAA
1 ACTATCCCATGTTTACTATCCCAACGGACTATCCAATGTTTACTATTC-CAACAA
66704777 ACTAT
1 ACTAT
66704782 ACTGGTTATC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.04
54 47 0.96
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (54 bp):
ACTATCCCATGTTTACTATCCCAACGGACTATCCAATGTTTACTATTCCAACAA
Found at i:66709692 original size:16 final size:16
Alignment explanation
Indices: 66709671--66709709 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
66709661 GTTTGGTTCA
66709671 CTGTAATGGAATA-AGG
1 CTGTAATGGAATAGA-G
*
66709687 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
66709703 CTGTAAT
1 CTGTAAT
66709710 CAATAATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:66712683 original size:287 final size:286
Alignment explanation
Indices: 66712131--66712683 Score: 881
Period size: 287 Copynumber: 1.9 Consensus size: 286
66712121 TCGAAATTGG
66712131 AGTTTTTAACAGCGAACTTGACGCAAGCTTTACATTAAAATGAGGAAAACAAAAACACAGTTAAA
1 AGTTTTTAACAGCGAACTTGACGCAAGCTTTACATTAAAATGAGGAAAACAAAAACACAGTTAAA
* * * **
66712196 ATGTATTGCATCGTCATATTTATGTAGTATTTGTGTTTTCAAATCAATGTGTTTAGATATATATT
66 ACGTATTGCATCGTCATATTTATATAGTATTTGTGTTTCCAAAGAAATGTGTTTAGATATATATT
*
66712261 TTTTATTCCATGTTTGAATGACACATTTCTCAAAGCTAAATTGAAAATTTTGCAACATTGAATTT
131 TTTTATTCCATGTTTGAATGACACATTTCTCAAAGCTAAATTGAAAATTTTGCAACATCGAATTT
*
66712326 ATTATAAATAACTTGTCAAAATATATTACTCATATTATTTTATACAATTTTGGATATTATAAATA
196 ATTATAAATAACTTGTCAAAATATATTACTCATATTATTTTATACAAATTTGGATATTATAAATA
66712391 AAATGGACCCAAGTATCCAAAATCAA
261 AAATGGACCCAAGTATCCAAAATCAA
* * * * * *
66712417 AGTTTTTCACATCGAACTTGACGCAAGTTTTATATTAAAATTAGGAAAACAAAAACACTGTTAAA
1 AGTTTTTAACAGCGAACTTGACGCAAGCTTTACATTAAAATGAGGAAAACAAAAACACAGTTAAA
* * *
66712482 ACGTGTTGCATCGTCATTTTTATATAGTATTTGTGTTTCCAAAGAAATGTGTTTAGATATGTATT
66 ACGTATTGCATCGTCATATTTATATAGTATTTGTGTTTCCAAAGAAATGTGTTTAGATATATATT
* * * *
66712547 TTTTGGTTCCGTGTTTGAATGACACATTTCTCACAGCTAAATTGAACATTTTGCAACATCGAATT
131 TTTT-ATTCCATGTTTGAATGACACATTTCTCAAAGCTAAATTGAAAATTTTGCAACATCGAATT
* * * *
66712612 TATTGTAAATAGCTTGTCAAAATATATTACTCATATTATTTTATGCAAATTTGGATATTATTAAT
195 TATTATAAATAACTTGTCAAAATATATTACTCATATTATTTTATACAAATTTGGATATTATAAAT
66712677 AAAATGG
260 AAAATGG
66712684 TTGATAGAAA
Statistics
Matches: 242, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
286 120 0.50
287 122 0.50
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.39
Consensus pattern (286 bp):
AGTTTTTAACAGCGAACTTGACGCAAGCTTTACATTAAAATGAGGAAAACAAAAACACAGTTAAA
ACGTATTGCATCGTCATATTTATATAGTATTTGTGTTTCCAAAGAAATGTGTTTAGATATATATT
TTTTATTCCATGTTTGAATGACACATTTCTCAAAGCTAAATTGAAAATTTTGCAACATCGAATTT
ATTATAAATAACTTGTCAAAATATATTACTCATATTATTTTATACAAATTTGGATATTATAAATA
AAATGGACCCAAGTATCCAAAATCAA
Found at i:66715612 original size:39 final size:38
Alignment explanation
Indices: 66715545--66715620 Score: 91
Period size: 39 Copynumber: 2.0 Consensus size: 38
66715535 ACCAGATTGG
*
66715545 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGCAA-AGTTGA
* * *
66715584 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAAAGTTG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGCAAAGTTG
66715621 GTACCTGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 5 0.16
39 24 0.75
40 3 0.09
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGCAAAGTTGA
Found at i:66716940 original size:3 final size:3
Alignment explanation
Indices: 66716932--66716974 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
66716922 ATTTTTAACT
* *
66716932 TAA TAA TAA TACC TAT TAAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA
66716975 GTTTAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
3 31 0.89
4 4 0.11
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:66735442 original size:43 final size:43
Alignment explanation
Indices: 66735394--66735567 Score: 330
Period size: 43 Copynumber: 4.0 Consensus size: 43
66735384 ATCTTCTAAA
*
66735394 ATATTTCAAATATATAAAAATATAAAACATAAATATAATCTAT
1 ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
66735437 ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
1 ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
66735480 ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
1 ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
*
66735523 ATATTTCAAATATATAAAAATATAAAACATAAATATAATCTAT
1 ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
66735566 AT
1 AT
66735568 GAAAGTATGA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (43 bp):
ATATTTCAAATATAAAAAAATATAAAACATAAATATAATCTAT
Found at i:66736270 original size:21 final size:22
Alignment explanation
Indices: 66736246--66736288 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
66736236 CACCACTATC
66736246 ATCATCATCATCATTTT-TTTT
1 ATCATCATCATCATTTTCTTTT
*
66736267 ATCATTATCATCATTTTCTTTT
1 ATCATCATCATCATTTTCTTTT
66736289 GCTTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (22 bp):
ATCATCATCATCATTTTCTTTT
Found at i:66739739 original size:64 final size:64
Alignment explanation
Indices: 66739638--66739765 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
66739628 AAATTTCTAT
66739638 ATTCAGTCCAAGAGTCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGGG
1 ATTCAGTCCAAGAGTCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGGG
66739702 ATTCAGTCCAAGAGTCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGGG
1 ATTCAGTCCAAGAGTCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGGG
66739766 TTTTTTTTAG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (64 bp):
ATTCAGTCCAAGAGTCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGGG
Found at i:66745843 original size:16 final size:16
Alignment explanation
Indices: 66745824--66745854 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66745814 CTTCTTCACT
66745824 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
66745840 TACTTACTTACTTAA
1 TACTCACTTACTTAA
66745855 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Done.