Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 205 of 310
Found at i:67126273 original size:18 final size:18
Alignment explanation
Indices: 67126240--67126274 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67126230 TCTAATACTC
*
67126240 TTTCTTTTTCTATCTTTA
1 TTTCTTTTACTATCTTTA
*
67126258 TTTCTTTTACTTTCTTT
1 TTTCTTTTACTATCTTT
67126275 TTATTTACTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCTTTTACTATCTTTA
Found at i:67148230 original size:16 final size:17
Alignment explanation
Indices: 67148193--67148230 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
67148183 AAAATAAAAG
*
67148193 ATTAAAATTGAAATTTA
1 ATTAAAATTGAAATTAA
*
67148210 TTTAAAATT-AAATTAA
1 ATTAAAATTGAAATTAA
67148226 ATTAA
1 ATTAA
67148231 TTTTATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
ATTAAAATTGAAATTAA
Found at i:67152771 original size:25 final size:25
Alignment explanation
Indices: 67152756--67152820 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
67152746 AGCACTGACA
67152756 TGCTAATAATTAGAGAGCAATAACG
1 TGCTAATAATTAGAGAGCAATAACG
67152781 TGCTAATAATTAGAGAGCAATAACG
1 TGCTAATAATTAGAGAGCAATAACG
*
67152806 TGCTAATAATCAGAG
1 TGCTAATAATTAGAG
67152821 CGCGCGCTAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (25 bp):
TGCTAATAATTAGAGAGCAATAACG
Found at i:67158362 original size:47 final size:49
Alignment explanation
Indices: 67158291--67158463 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 49
67158281 AGGGTATAAT
*
67158291 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * *
67158338 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCGAA
* * * *
67158387 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATATCCG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-A-AT-CGAA
* *
67158437 GCCGATGCCATATCCTAGACAT-GTCTT
1 GCCGATGCCATGTCCCAGACATGGTCTT
67158464 GCATTGGCAC
Statistics
Matches: 105, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 3 0.03
47 35 0.33
48 4 0.04
49 41 0.39
50 20 0.19
51 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
Found at i:67158416 original size:49 final size:47
Alignment explanation
Indices: 67158291--67158419 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 47
67158281 AGGGTATAAT
* *
67158291 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
* *
67158338 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AA
* *
67158387 GCCGACGCCATGTCCCAAACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
67158420 AGCTCTCACA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 3 0.04
47 35 0.49
48 3 0.04
49 31 0.43
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
Found at i:67162850 original size:20 final size:20
Alignment explanation
Indices: 67162825--67162865 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
67162815 CAAGAATACT
67162825 TTATCACCAACCTAAAATTC
1 TTATCACCAACCTAAAATTC
67162845 TTATCACCAACCTAAAATTC
1 TTATCACCAACCTAAAATTC
67162865 T
1 T
67162866 ATCTCTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (20 bp):
TTATCACCAACCTAAAATTC
Found at i:67169772 original size:21 final size:20
Alignment explanation
Indices: 67169748--67169794 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
67169738 ATTTATTGTT
67169748 TTATTAATTTTTCTATAACAA
1 TTATTAATTTTT-TATAACAA
* * *
67169769 TTATCAATTTTTTATTATAA
1 TTATTAATTTTTTATAACAA
67169789 TTATTA
1 TTATTA
67169795 TTATGGTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTAATTTTTTATAACAA
Found at i:67169817 original size:24 final size:25
Alignment explanation
Indices: 67169776--67169822 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
67169766 CAATTATCAA
*
67169776 TTTTTTATTATAATTATTATTATGG
1 TTTTTTATTATAAATATTATTATGG
67169801 TTTTTTATT-TAAATATTATTAT
1 TTTTTTATTATAAATATTATTAT
67169823 TAATGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (25 bp):
TTTTTTATTATAAATATTATTATGG
Found at i:67170112 original size:3 final size:3
Alignment explanation
Indices: 67170098--67170165 Score: 65
Period size: 3 Copynumber: 24.0 Consensus size: 3
67170088 AAATAGATAT
* * *
67170098 TTA TTA TAA TTA TTA TTA -TA GTT- TTA -TA TTA -AA TTA TTA -AA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
67170139 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
67170166 AAATAAATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
2 8 0.15
3 44 0.83
4 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:67170250 original size:21 final size:21
Alignment explanation
Indices: 67170206--67170246 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67170196 TGATTAATAG
*
67170206 TACATGTGTAATATATATAAA
1 TACATGTGTAATAAATATAAA
*
67170227 TACATTTGTAATAAA-ATAAA
1 TACATGTGTAATAAATATAAA
67170247 ATACTTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (21 bp):
TACATGTGTAATAAATATAAA
Found at i:67172177 original size:146 final size:146
Alignment explanation
Indices: 67172016--67172311 Score: 576
Period size: 146 Copynumber: 2.0 Consensus size: 146
67172006 TAAGGTTTAT
67172016 GAAT-TTGCTAAAATATCGAATTATTGATATTGAAATCAGTTGAATGTCGATTGAACTATTGAAA
1 GAATATTGCTAAAATATCGAATTATTGATATTGAAATCAGTTGAATGTCGATTGAACTATTGAAA
67172080 GTATGAGAAAGTGAAATTATGAATTGAAATGTGAATAAAAATTGAGATATCAAAATAAGAAATGA
66 GTATGAGAAAGTGAAATTATGAATTGAAATGTGAATAAAAATTGAGATATCAAAATAAGAAATGA
67172145 AAATAGAATGATTTGG
131 AAATAGAATGATTTGG
67172161 GAATATTGCTAAAATATCGAATTATTGATATTGAAATCAGTTGAATGTCGATTGAACTATTGAAA
1 GAATATTGCTAAAATATCGAATTATTGATATTGAAATCAGTTGAATGTCGATTGAACTATTGAAA
67172226 GTATGAGAAAGTGAAATTATGAATTGAAATGTGAATAAAAATTGAGATATCAAAATAAGAAATGA
66 GTATGAGAAAGTGAAATTATGAATTGAAATGTGAATAAAAATTGAGATATCAAAATAAGAAATGA
67172291 AAATAGAATGATTTGG
131 AAATAGAATGATTTGG
*
67172307 AAATA
1 GAATA
67172312 ATGAAATAGT
Statistics
Matches: 149, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
145 4 0.03
146 145 0.97
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (146 bp):
GAATATTGCTAAAATATCGAATTATTGATATTGAAATCAGTTGAATGTCGATTGAACTATTGAAA
GTATGAGAAAGTGAAATTATGAATTGAAATGTGAATAAAAATTGAGATATCAAAATAAGAAATGA
AAATAGAATGATTTGG
Found at i:67172723 original size:64 final size:64
Alignment explanation
Indices: 67172654--67172784 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
67172644 GATTTAATGT
*
67172654 GTATATATATTGTTTTTACCATAAGTATTTGAATTATAGTAATACTACCGGGTGTATACTTAGC
1 GTATATATATTGTTTTTACCATAAGTATTTGAATTATAGTAATACTACCGGGTGTATACTCAGC
67172718 GTATATATATTGTTTTTACCATAAGTATTTGAATTATAGTAATACTACCGGGTGTATACTCAGC
1 GTATATATATTGTTTTTACCATAAGTATTTGAATTATAGTAATACTACCGGGTGTATACTCAGC
67172782 GTA
1 GTA
67172785 CGGTTTGTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (64 bp):
GTATATATATTGTTTTTACCATAAGTATTTGAATTATAGTAATACTACCGGGTGTATACTCAGC
Found at i:67176151 original size:39 final size:39
Alignment explanation
Indices: 67176032--67176152 Score: 181
Period size: 39 Copynumber: 3.1 Consensus size: 39
67176022 ATTCAAGACA
*
67176032 CTGGAAATGTATCCAGGCTAAAG-TCCTGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTTCC-GCAGGCTTTGTG
* * *
67176071 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTG
*
67176110 CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGTTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTG
67176149 CTGG
1 CTGG
67176153 TAATATAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 71 0.97
40 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTTGTG
Found at i:67183452 original size:25 final size:25
Alignment explanation
Indices: 67183400--67183468 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
67183390 CACTCTCTCA
*
67183400 AGCCATATAACAGGATGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGTG
* *
67183425 AGCCATGTAACAGGAAGCTTAT-TCG
1 AGCCATATAACAGGAAGCTCATGT-G
*
67183450 AG-C-TATAACAGGAAACTCA
1 AGCCATATAACAGGAAGCTCA
67183469 AAAGAGTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
23 13 0.35
24 2 0.05
25 22 0.59
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGTG
Found at i:67185111 original size:24 final size:26
Alignment explanation
Indices: 67185051--67185111 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 26
67185041 CATTTTGTTA
*
67185051 GCCTTTGTAG--TGTATTCTGATTTG
1 GCCTTTGTAGCATGTATTCTGATTGG
* *
67185075 GCCTTTATGGCATGT-TT-TGATTGG
1 GCCTTTGTAGCATGTATTCTGATTGG
67185099 GCCTTTGTAGCAT
1 GCCTTTGTAGCAT
67185112 TTTGTTAGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
24 25 0.83
25 2 0.07
26 3 0.10
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.46
Consensus pattern (26 bp):
GCCTTTGTAGCATGTATTCTGATTGG
Found at i:67198264 original size:19 final size:19
Alignment explanation
Indices: 67198237--67198295 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
67198227 TTTAATGAGC
67198237 TTCAATTAGCCTTCGGGCT
1 TTCAATTAGCCTTCGGGCT
*
67198256 TTCATTTAGCACTT-GTGTGC-
1 TTCAATTAGC-CTTCG-G-GCT
*
67198276 TTCAGTTAGCCTTCGGGCT
1 TTCAATTAGCCTTCGGGCT
67198295 T
1 T
67198296 CTGTTTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
18 2 0.06
19 15 0.45
20 14 0.42
21 2 0.06
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.41
Consensus pattern (19 bp):
TTCAATTAGCCTTCGGGCT
Found at i:67198374 original size:39 final size:39
Alignment explanation
Indices: 67198235--67198374 Score: 190
Period size: 39 Copynumber: 3.6 Consensus size: 39
67198225 GCTTTAATGA
* *
67198235 GCTTCAATTAGCCTTCGGGCTTTCATTTAGCACTTGTGT
1 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
67198274 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAACACTTGTGT
1 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
67198313 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
67198352 GCTTCAACTAGACTTTGGGCTTC
1 GCTTCAATTAGCCTTCGGGCTTC
67198375 AGATCACGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:67205183 original size:21 final size:20
Alignment explanation
Indices: 67205158--67205261 Score: 81
Period size: 20 Copynumber: 5.2 Consensus size: 20
67205148 TAGCCTTGGG
67205158 GCTTCCATTTAGCACTTGTGT
1 GCTTCCATTTAGCACTT-TGT
* * *
67205179 GCTT-CAGTTAGC-CTTCGA
1 GCTTCCATTTAGCACTTTGT
* *
67205197 GCTTCCGTTTAACACTTGTGT
1 GCTTCCATTTAGCACTT-TGT
* *
67205218 GCTT-CAGTTAGC-CTTTGG
1 GCTTCCATTTAGCACTTTGT
*
67205236 GCTTCCGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTT-TGT
67205257 GCTTC
1 GCTTC
67205262 AGCTAGACTT
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
18 11 0.18
19 17 0.27
20 18 0.29
21 16 0.26
ACGTcount: A:0.13, C:0.25, G:0.21, T:0.40
Consensus pattern (20 bp):
GCTTCCATTTAGCACTTTGT
Found at i:67205183 original size:39 final size:39
Alignment explanation
Indices: 67205140--67205279 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
67205130 GCTCTGATGA
* *
67205140 GCTTCAGTTAGCCTTGGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
67205179 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
67205218 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
67205257 GCTTCAGCTAGACTTCTGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
67205280 AAATCACGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:67219291 original size:25 final size:25
Alignment explanation
Indices: 67219252--67219300 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
67219242 TACAGTCTAT
*
67219252 CTATAGTAGTCTCAGCATATACTAC
1 CTATAGCAGTCTCAGCATATACTAC
* *
67219277 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGCATATACTA
67219301 TCAAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (25 bp):
CTATAGCAGTCTCAGCATATACTAC
Found at i:67220075 original size:20 final size:19
Alignment explanation
Indices: 67220047--67220086 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
67220037 AAAACAATCA
*
67220047 TTTATTAAAAATCATCTCAT
1 TTTACTAAAAATCAT-TCAT
*
67220067 TTTACTAAATATCATTCAT
1 TTTACTAAAAATCATTCAT
67220086 T
1 T
67220087 CACATTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTACTAAAAATCATTCAT
Found at i:67221453 original size:23 final size:23
Alignment explanation
Indices: 67221423--67221568 Score: 138
Period size: 23 Copynumber: 6.4 Consensus size: 23
67221413 AGCTGTGGAT
67221423 AGTAAGCTCTAATGAGCTGAAAC
1 AGTAAGCTCTAATGAGCTGAAAC
* *
67221446 GGTAAGCTC--ATCGAGCTGAATC
1 AGTAAGCTCTAAT-GAGCTGAAAC
*
67221468 AGTAAGCTCCAATGAGCTGAAAC
1 AGTAAGCTCTAATGAGCTGAAAC
*
67221491 AGTAAGCTCT--TGCAAGCTGAATC
1 AGTAAGCTCTAATG--AGCTGAAAC
* * *
67221514 GGTAAGCTCCAATGAGCTGAAAA
1 AGTAAGCTCTAATGAGCTGAAAC
* * *
67221537 AGTAAGCTCTTACGAGCTGAATC
1 AGTAAGCTCTAATGAGCTGAAAC
*
67221560 GGTAAGCTC
1 AGTAAGCTC
67221569 ATACGAGTTG
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
21 4 0.04
22 17 0.17
23 74 0.75
24 2 0.02
25 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.22
Consensus pattern (23 bp):
AGTAAGCTCTAATGAGCTGAAAC
Found at i:67221526 original size:46 final size:45
Alignment explanation
Indices: 67221424--67221568 Score: 218
Period size: 46 Copynumber: 3.2 Consensus size: 45
67221414 GCTGTGGATA
* * * *
67221424 GTAAGCTCTAATGAGCTGAAACGGTAAGCTCATCGAGCTGAATCA
1 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTCGAGCTGAATCG
*
67221469 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTGCAAGCTGAATCG
1 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT-CGAGCTGAATCG
*
67221515 GTAAGCTCCAATGAGCTGAAAAAGTAAGCTCTTACGAGCTGAATCG
1 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT-CGAGCTGAATCG
67221561 GTAAGCTC
1 GTAAGCTC
67221569 ATACGAGTTG
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 30 0.33
46 61 0.67
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (45 bp):
GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTCGAGCTGAATCG
Found at i:67221545 original size:69 final size:68
Alignment explanation
Indices: 67221437--67221568 Score: 167
Period size: 69 Copynumber: 1.9 Consensus size: 68
67221427 AGCTCTAATG
** *
67221437 AGCTGAAACGGTAAGCTCATCGAGCTGAATCAGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT
1 AGCTGAAACGGTAAGCTCATCGAGCTGAAAAAGTAAGCTCCAACGAGCTGAAACAGTAAGCTCTT
67221502 GCA
66 GCA
* ** * *
67221505 AGCTGAATCGGTAAGCTCCAAT-GAGCTGAAAAAGTAAGCTCTTACGAGCTGAATCGGTAAGCTC
1 AGCTGAAACGGTAAGCT-C-ATCGAGCTGAAAAAGTAAGCTCCAACGAGCTGAAACAGTAAGCTC
67221569 ATACGAGTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
68 16 0.30
69 36 0.67
70 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (68 bp):
AGCTGAAACGGTAAGCTCATCGAGCTGAAAAAGTAAGCTCCAACGAGCTGAAACAGTAAGCTCTT
GCA
Found at i:67223770 original size:18 final size:18
Alignment explanation
Indices: 67223747--67223785 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
67223737 ATGTGGCTTA
67223747 CCCGTGTAAGCCCACAC-G
1 CCCGTGT-AGCCCACACTG
*
67223765 CCCGTGTGGCCCACACTG
1 CCCGTGTAGCCCACACTG
67223783 CCC
1 CCC
67223786 AAATCGGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.15, C:0.49, G:0.23, T:0.13
Consensus pattern (18 bp):
CCCGTGTAGCCCACACTG
Found at i:67236898 original size:25 final size:24
Alignment explanation
Indices: 67236861--67236909 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
67236851 TGTTTTAAAC
**
67236861 TGAAACTGTTATAGATAGTATAGTT
1 TGAAACTACTATAGATAGTA-AGTT
*
67236886 TGAAACTACTATAGGTAGTAAGTT
1 TGAAACTACTATAGATAGTAAGTT
67236910 GTACTGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (24 bp):
TGAAACTACTATAGATAGTAAGTT
Found at i:67241864 original size:34 final size:34
Alignment explanation
Indices: 67241821--67241888 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
67241811 GCATTTTTGA
* *
67241821 CACTGTACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
*
67241854 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAAAAGGGCTAAGGCCCAAGACTGT
67241889 TCAACTGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (34 bp):
CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:67243644 original size:13 final size:13
Alignment explanation
Indices: 67243628--67243667 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
67243618 TTTAAACCAA
67243628 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* * *
67243641 ACTTTTCCACATC
1 ACTTTTCAAAAGC
67243654 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
67243667 A
1 A
67243668 TTGCCAAACT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.28, G:0.05, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:67246393 original size:17 final size:18
Alignment explanation
Indices: 67246363--67246404 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
67246353 AGTTAATCTA
*
67246363 TCAAATTAACTAAT-TTTC
1 TCAAA-TAAATAATCTTTC
67246381 TCAAATAAATAATCTTTC
1 TCAAATAAATAATCTTTC
67246399 -CAAATA
1 TCAAATA
67246405 TTCTAGGCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (18 bp):
TCAAATAAATAATCTTTC
Found at i:67249595 original size:3 final size:3
Alignment explanation
Indices: 67249589--67249631 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
67249579 CTTCCTTCTA
*
67249589 TTC TTC TCTG TTC TTC TTC TTC TTC TTC -TC TTTC TTC TTC TTC
1 TTC TTC T-TC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC
67249632 AACTTGCATC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 29 0.83
4 4 0.11
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:67250467 original size:14 final size:16
Alignment explanation
Indices: 67250437--67250466 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67250427 TTTTCATTTT
67250437 TATATATTTTTAAAAA
1 TATATATTTTTAAAAA
67250453 TATA-ATTTTTAAAA
1 TATATATTTTTAAAA
67250467 TTTTATGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATATTTTTAAAAA
Found at i:67250503 original size:32 final size:33
Alignment explanation
Indices: 67250426--67250503 Score: 79
Period size: 32 Copynumber: 2.4 Consensus size: 33
67250416 ACCATTTTTA
* *
67250426 TTTTTCATTTTTATATATTTTTAAAAATATAAT
1 TTTTTAATTTTTATATATGTTTAAAAATATAAT
* * *
67250459 TTTTAAAATTTTATGT-TGTTT-AAAATATGAAT
1 TTTTTAATTTTTATATATGTTTAAAAATAT-AAT
*
67250491 TTTTTTATTTTTA
1 TTTTTAATTTTTA
67250504 AAAAAATACT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
31 7 0.19
32 17 0.47
33 12 0.33
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (33 bp):
TTTTTAATTTTTATATATGTTTAAAAATATAAT
Found at i:67251184 original size:18 final size:18
Alignment explanation
Indices: 67251144--67251187 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
67251134 AGTAGTGCTT
**
67251144 AAAAAAACACTTCTAGCT
1 AAAAAAACACTTCTAGAA
* *
67251162 CAAAAAACACTTTTAGAA
1 AAAAAAACACTTCTAGAA
67251180 AAAAAAAC
1 AAAAAAAC
67251188 TGTACTAAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.59, C:0.18, G:0.05, T:0.18
Consensus pattern (18 bp):
AAAAAAACACTTCTAGAA
Found at i:67251766 original size:26 final size:29
Alignment explanation
Indices: 67251704--67251767 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 29
67251694 GTTAAAATTT
67251704 TAAATTTTAAATTAAACTTTTCAAGAGTAC
1 TAAA-TTTAAATTAAACTTTTCAAGAGTAC
67251734 T--ATTTAAATT-AAC-TTTCAAG-GTA-
1 TAAATTTAAATTAAACTTTTCAAGAGTAC
67251757 TAAATATTAAA
1 TAAAT-TTAAA
67251768 ATATTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
23 1 0.03
24 3 0.10
25 9 0.29
26 8 0.26
27 8 0.26
28 1 0.03
30 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (29 bp):
TAAATTTAAATTAAACTTTTCAAGAGTAC
Found at i:67255666 original size:21 final size:21
Alignment explanation
Indices: 67255640--67255682 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
67255630 TTTTTGAGTA
67255640 AAAGGGACAAACTATAATCTG
1 AAAGGGACAAACTATAATCTG
67255661 AAAGGGACAAACTATAATCTG
1 AAAGGGACAAACTATAATCTG
67255682 A
1 A
67255683 CTCTTAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.19
Consensus pattern (21 bp):
AAAGGGACAAACTATAATCTG
Found at i:67258302 original size:21 final size:22
Alignment explanation
Indices: 67258261--67258303 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
67258251 TTCTTGAAAG
*
67258261 TGCCTATTGGGATCATGGACTT
1 TGCCTATTGGGATCATCGACTT
67258283 TGCC-ATTGGGATTC-TCGACTT
1 TGCCTATTGGGA-TCATCGACTT
67258304 CCTTGTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (22 bp):
TGCCTATTGGGATCATCGACTT
Found at i:67260643 original size:42 final size:42
Alignment explanation
Indices: 67260585--67260691 Score: 108
Period size: 42 Copynumber: 2.5 Consensus size: 42
67260575 AGTTATCATG
* * * * *
67260585 TAAGACCATATCTGGGATATGGCGTT-GATACGAGATTTCGTG
1 TAAGACCACATTTGGGATATGGC-TTCGAAACGAGAATTCGTA
* * * *
67260627 TAAGACTACGTTTGGGACATGGCTTCGAAATGAGAATTCGTA
1 TAAGACCACATTTGGGATATGGCTTCGAAACGAGAATTCGTA
*
67260669 TAAGACCATATTTGGGATATGGC
1 TAAGACCACATTTGGGATATGGC
67260692 ATATAAGTGA
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 2 0.04
42 49 0.96
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (42 bp):
TAAGACCACATTTGGGATATGGCTTCGAAACGAGAATTCGTA
Found at i:67262531 original size:43 final size:43
Alignment explanation
Indices: 67262470--67262556 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
67262460 TTAATTGTTA
* * * *
67262470 AAAATTAAATGATTGTATGTAAATAGGAATCTTGAAAGTTGTG
1 AAAATTAAATAATTGTATGCAAATAGAAATCTTGAAAATTGTG
* *
67262513 AAAATTAAATAATTGTATGCAAATATAAATTTTGAAAATTGTG
1 AAAATTAAATAATTGTATGCAAATAGAAATCTTGAAAATTGTG
67262556 A
1 A
67262557 TCAAATTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.46, C:0.02, G:0.16, T:0.36
Consensus pattern (43 bp):
AAAATTAAATAATTGTATGCAAATAGAAATCTTGAAAATTGTG
Found at i:67265260 original size:21 final size:21
Alignment explanation
Indices: 67265236--67265275 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67265226 TAGATTTTAA
* *
67265236 TTATAATATATATTTATTATT
1 TTATAAAAGATATTTATTATT
67265257 TTATAAAAGATATTTATTA
1 TTATAAAAGATATTTATTA
67265276 ATTAAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTATAAAAGATATTTATTATT
Found at i:67267229 original size:93 final size:92
Alignment explanation
Indices: 67267050--67267394 Score: 501
Period size: 93 Copynumber: 3.7 Consensus size: 92
67267040 ATGAAATATG
* **
67267050 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
*
67267115 TACTATGGCAACCTGACATGAAATGAA
66 TACCATGGCAACCTGACATGAAATGAA
* * ** *
67267142 TAAGACCAGGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGGCCATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAATAAGACCATGGTTGAAAG
* **
67267207 ATACCATGGCAACCTGATATGAAATGTG
65 ATACCATGGCAACCTGACATGAAATGAA
* *
67267235 TAAGACCATGGTTGAAAGATACTATGGCAACCTGACATGAAATGAATAAGACCAGGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
* **
67267300 TACCATGGCAACATGACGGGAAAATGAA
66 TACCATGGCAACCTGACATG-AAATGAA
* *
67267328 TAAGGCCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
67267393 TA
66 TA
67267395 TTATGGCATC
Statistics
Matches: 222, Mismatches: 29, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
92 74 0.33
93 148 0.67
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACCTGACATGAAATGAA
Found at i:67267305 original size:139 final size:139
Alignment explanation
Indices: 67267050--67267402 Score: 652
Period size: 139 Copynumber: 2.5 Consensus size: 139
67267040 ATGAAATATG
*
67267050 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
67267115 TACTATGGCAACCTGACATGAAATGAATAAGACCAGGGTTGAAAGATACCATGGCAACATGACGG
66 TACTATGGCAACCTGACATGAAATGAATAAGACCAGGGTTGAAAGATACCATGGCAACATGACGG
67267180 GAAAATGAA
131 GAAAATGAA
67267189 TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
67267254 TACTATGGCAACCTGACATGAAATGAATAAGACCAGGGTTGAAAGATACCATGGCAACATGACGG
66 TACTATGGCAACCTGACATGAAATGAATAAGACCAGGGTTGAAAGATACCATGGCAACATGACGG
67267319 GAAAATGAA
131 GAAAATGAA
* * **
67267328 TAAGGCCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
*
67267393 TATTATGGCA
66 TACTATGGCA
67267403 TCATGTCGAA
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 208 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.21
Consensus pattern (139 bp):
TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
TACTATGGCAACCTGACATGAAATGAATAAGACCAGGGTTGAAAGATACCATGGCAACATGACGG
GAAAATGAA
Found at i:67267402 original size:46 final size:46
Alignment explanation
Indices: 67267050--67267394 Score: 501
Period size: 46 Copynumber: 7.5 Consensus size: 46
67267040 ATGAAATATG
* **
67267050 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
*
67267096 TAAGACCATGGTTGAAAGATACTATGGCAACCTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
* * **
67267142 TAAGACCAGGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAA
* * **
67267189 TAAGGCCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
*
67267235 TAAGACCATGGTTGAAAGATACTATGGCAACCTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
* * **
67267281 TAAGACCAGGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAA
* *
67267328 TAAGGCCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
67267374 TAAGACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATA
67267395 TTATGGCATC
Statistics
Matches: 264, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
46 183 0.69
47 81 0.31
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
Found at i:67267519 original size:46 final size:46
Alignment explanation
Indices: 67267451--67267588 Score: 195
Period size: 46 Copynumber: 3.0 Consensus size: 46
67267441 CAAGATATCT
* **
67267451 GTTGAACAAATACCATGGCAACCTGATATGAAATGTGTAAGACCATG
1 GTTGAA-AGATACCATGGCAACCTGATATGAAATGAATAAGACCATG
* *
67267498 GTTGAAAGATACCATGGCAACCCGATATGAAATGAATAAGATCATG
1 GTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATG
* **
67267544 GTTGAAAGATACCATGGCAACATGATGGGAAATGAATAAGACCAT
1 GTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCAT
67267589 TGTAACGCCC
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
46 75 0.93
47 6 0.07
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
GTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATG
Found at i:67278107 original size:10 final size:10
Alignment explanation
Indices: 67278089--67278156 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 10
67278079 TAATATAGGG
67278089 AATAATATAT
1 AATAATATAT
*
67278099 AATATTATAT
1 AATAATATAT
*
67278109 GATAAGTA-AT
1 AATAA-TATAT
67278119 AA-AATATAT
1 AATAATATAT
*
67278128 AAATAAAATAT
1 -AATAATATAT
67278139 AATGAA-ATAT
1 AAT-AATATAT
67278149 AAATAATA
1 -AATAATA
67278157 CAATAAATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
8 2 0.04
9 4 0.09
10 26 0.57
11 14 0.30
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (10 bp):
AATAATATAT
Found at i:67278359 original size:12 final size:13
Alignment explanation
Indices: 67278310--67278362 Score: 58
Period size: 12 Copynumber: 4.2 Consensus size: 13
67278300 ATAATAACAT
67278310 ATAATATATAATA
1 ATAATATATAATA
*
67278323 A-AATTTATAAATA
1 ATAATATAT-AATA
*
67278336 A-AATGTATAATA
1 ATAATATATAATA
67278348 ATAATATA-AATA
1 ATAATATATAATA
67278360 ATA
1 ATA
67278363 TAATGGATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
12 18 0.51
13 17 0.49
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (13 bp):
ATAATATATAATA
Found at i:67278385 original size:27 final size:27
Alignment explanation
Indices: 67278332--67278391 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
67278322 AAAATTTATA
* * *
67278332 AATAAAATGTATAATAATAATATAAAT
1 AATATAATGGATAATAATAATAAAAAT
67278359 AATATAATGGATAAT-ATAAATAAAAAT
1 AATATAATGGATAATAAT-AATAAAAAT
*
67278386 GATATA
1 AATATA
67278392 TACTATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 26 0.93
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.32
Consensus pattern (27 bp):
AATATAATGGATAATAATAATAAAAAT
Found at i:67280837 original size:27 final size:27
Alignment explanation
Indices: 67280807--67280984 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
67280797 ATATTGAGCC
* *
67280807 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
67280834 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
67280861 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
67280889 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
67280916 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
67280943 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
67280970 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67280985 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:67280946 original size:82 final size:81
Alignment explanation
Indices: 67280828--67280983 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
67280818 TGCTATATAA
* *
67280828 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67280893 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67280910 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67280974 CACTTAGTGC
65 CACTTAGTGC
67280984 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67283410 original size:44 final size:44
Alignment explanation
Indices: 67283264--67283447 Score: 171
Period size: 44 Copynumber: 4.3 Consensus size: 44
67283254 ATGCTGATAT
* * * ** *
67283264 TTCGATCTGCTCTCTGTCGAACACAGAGACACCAAATTTGCT-TC
1 TTCGATCTGCTCTATGAC-AATACAGAGATGCCAAATCTGCTATC
* * * ** *
67283308 TTCGCTTTGTTCCCTGATAATACAGAGATGCCAAA--T-C-ATC
1 TTCGATCTGCTCTATGACAATACAGAGATGCCAAATCTGCTATC
* *
67283348 TTCGATCTGCTCTCTGACAATACAGAGATACCAAATCTGCTATC
1 TTCGATCTGCTCTATGACAATACAGAGATGCCAAATCTGCTATC
* *
67283392 TTCGATCTTCTCTATGACAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTATGACAATACAGAGATGCCAAATCTGCTATC
*
67283436 TTCAATCTGCTC
1 TTCGATCTGCTC
67283448 CTTGTAAACA
Statistics
Matches: 114, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
40 32 0.28
41 1 0.01
42 1 0.01
43 15 0.13
44 65 0.57
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (44 bp):
TTCGATCTGCTCTATGACAATACAGAGATGCCAAATCTGCTATC
Found at i:67283414 original size:84 final size:84
Alignment explanation
Indices: 67283264--67283428 Score: 208
Period size: 84 Copynumber: 2.0 Consensus size: 84
67283254 ATGCTGATAT
* * * * * *
67283264 TTCGATCTGCTCTCTGTCGAACACAGAGACACCAAATTTGCTTCTTCGCTTTGTTCCCTGATAAT
1 TTCGATCTGCTCTCTGACGAACACAGAGACACCAAATCTGCTTCTTCGATTTGCTCCATGACAAT
*
67283329 ACAGAGATGCCAAATCATC
66 ACAGAGACGCCAAATCATC
* * *
67283348 TTCGATCTGCTCTCTGAC-AATACAGAGATACCAAATCTGCTATCTTCGATCTT-CTCTATGACA
1 TTCGATCTGCTCTCTGACGAACACAGAGACACCAAATCTGCT-TCTTCGAT-TTGCTCCATGACA
67283411 ATACAGAGACGCCAAATC
64 ATACAGAGACGCCAAATC
67283429 TGCTATCTTC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 20 0.29
84 47 0.68
85 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (84 bp):
TTCGATCTGCTCTCTGACGAACACAGAGACACCAAATCTGCTTCTTCGATTTGCTCCATGACAAT
ACAGAGACGCCAAATCATC
Found at i:67283604 original size:220 final size:221
Alignment explanation
Indices: 67283326--67283851 Score: 689
Period size: 220 Copynumber: 2.4 Consensus size: 221
67283316 GTTCCCTGAT
* * * *
67283326 AATACAGAGATGCCAAATC-A--TCTTCGATCTGCTCTCTGACAATACAGAGATACCAAATCTGC
1 AATATAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCT-C
* * * * * *
67283388 TATCTTCGATCTTC-TCTA-TG-ACAATACAGAGACGCCAAATCTGCT-ATCTTCAATCTGCTCC
65 -ATCTTAGATCTACTTC-AGCGTA-AACACAGAAAAGCCAAATCTGCTAATCTTCAATCTGCTCC
* * * * * **
67283449 TTGTAAACACAAGGATGCTAAATCATTTTGGATCTGCTTCGATGCAAAAACATCTGAAGGTTAGA
127 TTATAAACACAAGGATACCAAATCATCTTGGATCTACTTCGATGCAAAAACATCCAAAGGTTAGA
67283514 TCTG-CATGTCTTCGATCTACTCTCCGTCG
192 TCTGCCATGTCTTCGATCTACTCTCCGTCG
* *
67283543 AATATAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAAAATACAGATATGCCAAA--TCA
1 AATATAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTCA
* *
67283606 TCTTAGATCTACTTCAGCGTAAACACATAAAAGCCAAATCTGCTACATCTTCGATCTGCTCCTTA
66 TCTTAGATCTACTTCAGCGTAAACACAGAAAAGCCAAATCTGCTA-ATCTTCAATCTGCTCCTTA
* *
67283671 TAAACGCAAGGATACCAAATCATCTTGGATCTACTTCGATGTAAAAACATCCAAAGGTTAGATCT
130 TAAACACAAGGATACCAAATCATCTTGGATCTACTTCGATGCAAAAACATCCAAAGGTTAGATCT
* *
67283736 GCCATGTCTTCGATCTGCTTTCCGTCG
195 GCCATGTCTTCGATCTACTCTCCGTCG
67283763 AATATAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAA--TCA
1 AATATAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTCA
*
67283826 TCTTGGATCTACTTCAGCGTAAACAC
66 TCTTAGATCTACTTCAGCGTAAACAC
67283852 CTGAAGGTCA
Statistics
Matches: 272, Mismatches: 28, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
216 12 0.04
217 41 0.15
218 3 0.01
219 75 0.28
220 141 0.52
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (221 bp):
AATATAGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCTCA
TCTTAGATCTACTTCAGCGTAAACACAGAAAAGCCAAATCTGCTAATCTTCAATCTGCTCCTTAT
AAACACAAGGATACCAAATCATCTTGGATCTACTTCGATGCAAAAACATCCAAAGGTTAGATCTG
CCATGTCTTCGATCTACTCTCCGTCG
Found at i:67283710 original size:219 final size:218
Alignment explanation
Indices: 67283421--67283851 Score: 702
Period size: 220 Copynumber: 2.0 Consensus size: 218
67283411 ATACAGAGAC
* * * * *
67283421 GCCAAATCTGCTATCTTCAATCTGCTCCTTGTAAACACAAGGATGCTAAATCATTTTGGATCTGC
1 GCCAAATCTGCTATCTTCAATCTGCTCCTTATAAACACAAGGATACCAAATCATCTTGGATCTAC
**
67283486 TTCGATGCAAAAACATCTGAAGGTTAGATCTG-CATGTCTTCGATCTACTCTCCGTCGAATATAG
66 TTCGATGCAAAAACATCCAAAGGTTAGATCTGCCATGTCTTCGATCTACTCTCCGTCGAATATAG
*
67283550 AGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAAAATACAGATATGCCAAATCATCTTAGATC
131 AGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATC
67283615 TACTTCAGCGTAAACACATAAAA
196 TACTTCAGCGTAAACACATAAAA
* *
67283638 GCCAAATCTGCTACATCTTCGATCTGCTCCTTATAAACGCAAGGATACCAAATCATCTTGGATCT
1 GCCAAATCTGCT--ATCTTCAATCTGCTCCTTATAAACACAAGGATACCAAATCATCTTGGATCT
* * *
67283703 ACTTCGATGTAAAAACATCCAAAGGTTAGATCTGCCATGTCTTCGATCTGCTTTCCGTCGAATAT
64 ACTTCGATGCAAAAACATCCAAAGGTTAGATCTGCCATGTCTTCGATCTACTCTCCGTCGAATAT
* *
67283768 AGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGA
129 AGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGA
67283833 TCTACTTCAGCGTAAACAC
194 TCTACTTCAGCGTAAACAC
67283852 CTGAAGGTCA
Statistics
Matches: 196, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
217 12 0.06
219 75 0.38
220 109 0.56
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (218 bp):
GCCAAATCTGCTATCTTCAATCTGCTCCTTATAAACACAAGGATACCAAATCATCTTGGATCTAC
TTCGATGCAAAAACATCCAAAGGTTAGATCTGCCATGTCTTCGATCTACTCTCCGTCGAATATAG
AGATGCCAAATCTATTTCTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATC
TACTTCAGCGTAAACACATAAAA
Found at i:67287635 original size:10 final size:10
Alignment explanation
Indices: 67287620--67287687 Score: 61
Period size: 10 Copynumber: 6.7 Consensus size: 10
67287610 TAATATAGGG
67287620 AATAATATAT
1 AATAATATAT
67287630 AATAATATAT
1 AATAATATAT
*
67287640 GATAAGTA-AT
1 AATAA-TATAT
67287650 AA-AATATAT
1 AATAATATAT
*
67287659 AAATAAAATAT
1 -AATAATATAT
67287670 AATGAA-ATAT
1 AAT-AATATAT
67287680 AAATAATA
1 -AATAATA
67287688 CAATAAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
8 2 0.04
9 4 0.08
10 28 0.58
11 14 0.29
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.32
Consensus pattern (10 bp):
AATAATATAT
Found at i:67287651 original size:17 final size:16
Alignment explanation
Indices: 67287628--67287708 Score: 59
Period size: 15 Copynumber: 5.2 Consensus size: 16
67287618 GGAATAATAT
67287628 ATAATAATATATGATAA
1 ATAATAATATAT-ATAA
* *
67287645 GTAATAAAATATATAA
1 ATAATAATATATATAA
67287661 ATAA-AATATA-ATGAA
1 ATAATAATATATAT-AA
67287676 AT-ATAA-ATA-ATACA
1 ATAATAATATATATA-A
67287690 AT-A-AATATCATATAA
1 ATAATAATAT-ATATAA
67287705 ATAA
1 ATAA
67287709 GGATAGTACA
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
13 3 0.06
14 14 0.26
15 15 0.28
16 11 0.21
17 10 0.19
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (16 bp):
ATAATAATATATATAA
Found at i:67287890 original size:24 final size:23
Alignment explanation
Indices: 67287859--67287921 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
67287849 TAATAAAATT
*
67287859 TATAAATAAAATGTAT-AATAATAA
1 TATAAATAAAAT-AATGAATAAT-A
* *
67287883 TATAAATAATATAATGGATAATA
1 TATAAATAAAATAATGAATAATA
67287906 TATAAATAAAAATAAT
1 TATAAAT-AAAATAAT
67287922 ATATACTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 10 0.30
24 23 0.70
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAAATAAAATAATGAATAATA
Found at i:67287910 original size:47 final size:46
Alignment explanation
Indices: 67287825--67287916 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 46
67287815 ACAAGGAATA
*
67287825 GTATATATAATAACATATAATATATAATAAAATTTATAAATAAAAT
1 GTATATATAATAACATATAATATATAATAAAATATATAAATAAAAT
* *
67287871 GTATA-ATAATAATATA-AATAATATAATGGATAATATATAAATAAAA
1 GTATATATAATAACATATAAT-ATATAAT--AAAATATATAAATAAAA
67287917 ATAATATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
44 3 0.08
45 17 0.43
46 5 0.12
47 15 0.38
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (46 bp):
GTATATATAATAACATATAATATATAATAAAATATATAAATAAAAT
Found at i:67290254 original size:21 final size:21
Alignment explanation
Indices: 67290230--67290269 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67290220 TAGATTTTAA
* *
67290230 TTATAATATATATTTATTATT
1 TTATAAAAGATATTTATTATT
67290251 TTATAAAAGATATTTATTA
1 TTATAAAAGATATTTATTA
67290270 ATTAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTATAAAAGATATTTATTATT
Found at i:67290279 original size:25 final size:23
Alignment explanation
Indices: 67290226--67290279 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
67290216 TACTTAGATT
* *
67290226 TTAATTATAATATATATTTATTA
1 TTAATTATAAAAGATATTTATTA
67290249 TT--TTATAAAAGATATTTATTAA
1 TTAATTATAAAAGATATTTATT-A
67290271 TTAAATTAT
1 TT-AATTAT
67290280 TAAATTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 16 0.64
22 3 0.12
23 2 0.08
25 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TTAATTATAAAAGATATTTATTA
Found at i:67292432 original size:93 final size:92
Alignment explanation
Indices: 67292266--67292471 Score: 322
Period size: 93 Copynumber: 2.2 Consensus size: 92
67292256 ATGAAATATG
* * * **
67292266 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGA
*
67292331 TACCATGGCAACGTGACATGAAATGAA
66 TACCATGGCAACGCGACATGAAATGAA
* * *
67292358 TAAGACCAGGGTTGAAAGATACCATGGTAACATGACGGGAAAATGAATAAGACCATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGG-AAATGAATAAGACCATGGTTGAAAG
67292423 ATACCATGGCAACGCGACATGAAATGAA
65 ATACCATGGCAACGCGACATGAAATGAA
67292451 TAAGACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATA
67292472 TTATGGCATT
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 33 0.32
93 70 0.68
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.20
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACGCGACATGAAATGAA
Found at i:67292479 original size:46 final size:46
Alignment explanation
Indices: 67292266--67292471 Score: 297
Period size: 46 Copynumber: 4.5 Consensus size: 46
67292256 ATGAAATATG
* **
67292266 TAAGACCATGGTTGAAAGATACCATGGCAAC-CTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACGC-GACATGAAATGAA
*
67292312 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGCGACATGAAATGAA
* * ** **
67292358 TAAGACCAGGGTTGAAAGATACCATGGTAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGCGACATG-AAATGAA
67292405 TAAGACCATGGTTGAAAGATACCATGGCAACGCGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGCGACATGAAATGAA
67292451 TAAGACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATA
67292472 TTATGGCATT
Statistics
Matches: 143, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
46 103 0.72
47 40 0.28
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGCGACATGAAATGAA
Found at i:67305737 original size:21 final size:21
Alignment explanation
Indices: 67305713--67305754 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
67305703 AAGACACATA
67305713 GCCGTGTGAAGAGGCCGTGTG
1 GCCGTGTGAAGAGGCCGTGTG
*
67305734 GCCGTGTGAAGAGGCTGTGTG
1 GCCGTGTGAAGAGGCCGTGTG
67305755 CCACACACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.17, G:0.48, T:0.21
Consensus pattern (21 bp):
GCCGTGTGAAGAGGCCGTGTG
Found at i:67306622 original size:45 final size:45
Alignment explanation
Indices: 67306573--67306685 Score: 147
Period size: 45 Copynumber: 2.5 Consensus size: 45
67306563 GTGTCATAGT
67306573 GTCTTTTAGCTATGGTATTA-TACGTTTGAATCGTGATGCCATAAC
1 GTCTTTTAGCTATGGTATTACT-CGTTTGAATCGTGATGCCATAAC
* * * * * *
67306618 GTCTTTCAGCTATGGTCTTACTTGTTTGATTCGTGGTGCCATAGC
1 GTCTTTTAGCTATGGTATTACTCGTTTGAATCGTGATGCCATAAC
*
67306663 GTCTTTTAGCTATGGTCTTACTC
1 GTCTTTTAGCTATGGTATTACTC
67306686 ATTTTTTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (45 bp):
GTCTTTTAGCTATGGTATTACTCGTTTGAATCGTGATGCCATAAC
Found at i:67316975 original size:694 final size:694
Alignment explanation
Indices: 67315646--67317028 Score: 2403
Period size: 694 Copynumber: 2.0 Consensus size: 694
67315636 TGGCTCATCC
* *
67315646 ATCGAACTTCCTTTTCAACTTCAATCGGGACATTTATCAATATGTTATTATTAAGGATACATTTC
1 ATCGAACTTCCTTTTCAACCTCAATCGGGACATTTATCAATATGTTATTATTAAGGATACATTCC
** *
67315711 ATGGATTTTCATGCCATCATAAAATTCAATTATGATACATTCATAAACCATGCAATTAAGCATAC
66 ATGGATTTTCATGCCATCATAAAATGAAATTATCATACATTCATAAACCATGCAATTAAGCATAC
*
67315776 TATGAGTTTACTTTAAGTTATTCGAACTTACCTAGTACTCGTCTCGGTATCGTGTTTCGATTATT
131 TATGAGTTTACTTTAAGTTATTCGAACTTACCTAGTACTCATCTCGGTATCGTGTTTCGATTATT
* *
67315841 CTGAAACCTTTTGTTTCCCTCGATCGACCTCTAGAATTTGTTCCTCGGGGTCTATAACAATAAAA
196 CTGAAACCTTTCGTTTCCCTCGATCGACCTCGAGAATTTGTTCCTCGGGGTCTATAACAATAAAA
67315906 ATGAATCATTAACACCTCAAATTATACTATTCGAGTCTAAATTTCACCCCCGGTCCAAATGACAG
261 ATGAATCATTAACACCTCAAATTATACTATTCGAGTCTAAATTTCACCCCCGGTCCAAATGACAG
* *
67315971 TTTTACTCCTAACCTTTCACATTTTTACGATTTAGTCCCTAGGCTCGTATAATGAAATGCATGCA
326 TTTTACCCCTAACCTTTCACATTTTTACGATTTAGTCCCTAGGCTCGTATAATGAAATGCATACA
* * *
67316036 ATGTCTACATTACCCAAGCCTATCCGAATGTTATTTCCTCTTATGAAAGCCCACATTTTCCATTA
391 ATGTATACATTACCCAAGCCTATCCAAATGTTATTTACTCTTATGAAAGCCCACATTTTCCATTA
*
67316101 TTCCACATTTCTACCACATATTTTACACTTTTTTCAAAAAGGTCCTTTTAGGGGTTTTTCATGAA
456 TTCCACATTTCTACCACATATTTTACACCTTTTTCAAAAAGGTCCTTTTAGGGGTTTTTCATGAA
* *
67316166 AATCACCTAGAAAAATATGTTTAACTCACATTCAACTTTCATATTCCTCCATAAAACATCAAAGA
521 AATCACCTAGAAAAAGATGTTTAACTCACATCCAACTTTCATATTCCTCCATAAAACATCAAAGA
* * *
67316231 ATAAACATGTCACACATGTGTCATTTTGAAAACATGGACCCTAACTCAAAATATAGGTAGAAATG
586 ATAAACATGTCACACATGGGTCATTTTGAAAACATGAACCATAACTCAAAATATAGGTAGAAATG
67316296 GAGAGAGTAAGCTACCGAGATTTCAAAAATACGAAGAACATACT
651 GAGAGAGTAAGCTACCGAGATTTCAAAAATACGAAGAACATACT
*
67316340 ATCGAACTTCCTTTTCAACCTCAATCGGGACATTTATCGATATGTTATTATTAAGGATACATTCC
1 ATCGAACTTCCTTTTCAACCTCAATCGGGACATTTATCAATATGTTATTATTAAGGATACATTCC
*
67316405 ATGGATTTTCATGCCATCATCAAATGAAATTATCATACATTCATAAACCATGCAATTAAGCATAC
66 ATGGATTTTCATGCCATCATAAAATGAAATTATCATACATTCATAAACCATGCAATTAAGCATAC
* *
67316470 TATGAGTTTACTTTAAGTTATTCGAACTTACCTGGTACTCATCTTGGTATCGTGTTTCGATTATT
131 TATGAGTTTACTTTAAGTTATTCGAACTTACCTAGTACTCATCTCGGTATCGTGTTTCGATTATT
* *
67316535 CTGAAACCTTTCGTTTTCCTCGATCGACCTTCGA-AATTTGTTTCTCGGGGTCTATAACAATAAA
196 CTGAAACCTTTCGTTTCCCTCGATCGACC-TCGAGAATTTGTTCCTCGGGGTCTATAACAATAAA
** *
67316599 AATGAATCATTAACACCTCACGTTATACTATTCGAGTCTAAATTTCACCCCTGGTCCAAATGATC
260 AATGAATCATTAACACCTCAAATTATACTATTCGAGTCTAAATTTCACCCCCGGTCCAAATGA-C
* *
67316664 -GTTTTTCCCCTAACCTTTCACATTTTTACGATTTAGTCCCTAGGCTTGTATAATGAAATGCATA
324 AGTTTTACCCCTAACCTTTCACATTTTTACGATTTAGTCCCTAGGCTCGTATAATGAAATGCATA
* *
67316728 CAATTTATACATTACCCAAGCCTAGT-CAAATGTTATTTACTCTTATGAAAGCTCACATTTTCCA
389 CAATGTATACATTACCCAAGCCTA-TCCAAATGTTATTTACTCTTATGAAAGCCCACATTTTCCA
*
67316792 TTATTCTACATTTCTACCACATATTTTACACCTTTTTCAAAAAGGTCCTTTTAGGGGTTTTTCAT
453 TTATTCCACATTTCTACCACATATTTTACACCTTTTTCAAAAAGGTCCTTTTAGGGGTTTTTCAT
67316857 GAAAATCACCTAGAAAAAGATGTTTAACTCACATCCAACTTTCATATTCCTCCATAAAACATCAA
518 GAAAATCACCTAGAAAAAGATGTTTAACTCACATCCAACTTTCATATTCCTCCATAAAACATCAA
67316922 AGAATAAACATGTCACACATGGGTCATTTTGAAAACATGAACCATAACTCAAAATATAGGTAGAA
583 AGAATAAACATGTCACACATGGGTCATTTTGAAAACATGAACCATAACTCAAAATATAGGTAGAA
* *
67316987 ATGGAGAGAGTAAGCTACCGGGATTTCAAAAATATGAAGAAC
648 ATGGAGAGAGTAAGCTACCGAGATTTCAAAAATACGAAGAAC
67317029 GTTAAAAACG
Statistics
Matches: 651, Mismatches: 35, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
694 646 0.99
695 5 0.01
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (694 bp):
ATCGAACTTCCTTTTCAACCTCAATCGGGACATTTATCAATATGTTATTATTAAGGATACATTCC
ATGGATTTTCATGCCATCATAAAATGAAATTATCATACATTCATAAACCATGCAATTAAGCATAC
TATGAGTTTACTTTAAGTTATTCGAACTTACCTAGTACTCATCTCGGTATCGTGTTTCGATTATT
CTGAAACCTTTCGTTTCCCTCGATCGACCTCGAGAATTTGTTCCTCGGGGTCTATAACAATAAAA
ATGAATCATTAACACCTCAAATTATACTATTCGAGTCTAAATTTCACCCCCGGTCCAAATGACAG
TTTTACCCCTAACCTTTCACATTTTTACGATTTAGTCCCTAGGCTCGTATAATGAAATGCATACA
ATGTATACATTACCCAAGCCTATCCAAATGTTATTTACTCTTATGAAAGCCCACATTTTCCATTA
TTCCACATTTCTACCACATATTTTACACCTTTTTCAAAAAGGTCCTTTTAGGGGTTTTTCATGAA
AATCACCTAGAAAAAGATGTTTAACTCACATCCAACTTTCATATTCCTCCATAAAACATCAAAGA
ATAAACATGTCACACATGGGTCATTTTGAAAACATGAACCATAACTCAAAATATAGGTAGAAATG
GAGAGAGTAAGCTACCGAGATTTCAAAAATACGAAGAACATACT
Found at i:67318728 original size:13 final size:13
Alignment explanation
Indices: 67318712--67318740 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67318702 CCCTCCATAT
67318712 ATTAACTCCTTTA
1 ATTAACTCCTTTA
67318725 ATTAACTCCTTTA
1 ATTAACTCCTTTA
67318738 ATT
1 ATT
67318741 TTTAGCTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAACTCCTTTA
Found at i:67319677 original size:18 final size:18
Alignment explanation
Indices: 67319643--67319680 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
67319633 TTTAATAAAG
*
67319643 TATTTAATATTATAATTT
1 TATTTAATAATATAATTT
67319661 TATTATAATAATA-AATTT
1 TATT-TAATAATATAATTT
67319679 TA
1 TA
67319681 AATAATCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATTTAATAATATAATTT
Found at i:67327504 original size:258 final size:258
Alignment explanation
Indices: 67327047--67327562 Score: 1032
Period size: 258 Copynumber: 2.0 Consensus size: 258
67327037 GAATCGGACG
67327047 ATTTATTCATTTAACTTGTTCCATAGAGATCCCTAAGTTATGTTATTATCCTTATTCAAGACTAA
1 ATTTATTCATTTAACTTGTTCCATAGAGATCCCTAAGTTATGTTATTATCCTTATTCAAGACTAA
67327112 TAACGTCTAATCCCTAGATTGAACAACTAAGACTTTTCTCTAATTAATACTCTAGGGTTGTATTA
66 TAACGTCTAATCCCTAGATTGAACAACTAAGACTTTTCTCTAATTAATACTCTAGGGTTGTATTA
67327177 ACTCAATCTATGGATCCCCCTATTAGGTTTCACCCTAATCCGACAAAATCTTGTCACCGTATCTC
131 ACTCAATCTATGGATCCCCCTATTAGGTTTCACCCTAATCCGACAAAATCTTGTCACCGTATCTC
67327242 TAAGTGCGTAATCAACTCTACTTAATTATGACAAATGTACTCTTAGACAAGGTCTATTCCTCC
196 TAAGTGCGTAATCAACTCTACTTAATTATGACAAATGTACTCTTAGACAAGGTCTATTCCTCC
67327305 ATTTATTCATTTAACTTGTTCCATAGAGATCCCTAAGTTATGTTATTATCCTTATTCAAGACTAA
1 ATTTATTCATTTAACTTGTTCCATAGAGATCCCTAAGTTATGTTATTATCCTTATTCAAGACTAA
67327370 TAACGTCTAATCCCTAGATTGAACAACTAAGACTTTTCTCTAATTAATACTCTAGGGTTGTATTA
66 TAACGTCTAATCCCTAGATTGAACAACTAAGACTTTTCTCTAATTAATACTCTAGGGTTGTATTA
67327435 ACTCAATCTATGGATCCCCCTATTAGGTTTCACCCTAATCCGACAAAATCTTGTCACCGTATCTC
131 ACTCAATCTATGGATCCCCCTATTAGGTTTCACCCTAATCCGACAAAATCTTGTCACCGTATCTC
67327500 TAAGTGCGTAATCAACTCTACTTAATTATGACAAATGTACTCTTAGACAAGGTCTATTCCTCC
196 TAAGTGCGTAATCAACTCTACTTAATTATGACAAATGTACTCTTAGACAAGGTCTATTCCTCC
67327563 TCTGAATAAG
Statistics
Matches: 258, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
258 258 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (258 bp):
ATTTATTCATTTAACTTGTTCCATAGAGATCCCTAAGTTATGTTATTATCCTTATTCAAGACTAA
TAACGTCTAATCCCTAGATTGAACAACTAAGACTTTTCTCTAATTAATACTCTAGGGTTGTATTA
ACTCAATCTATGGATCCCCCTATTAGGTTTCACCCTAATCCGACAAAATCTTGTCACCGTATCTC
TAAGTGCGTAATCAACTCTACTTAATTATGACAAATGTACTCTTAGACAAGGTCTATTCCTCC
Found at i:67331076 original size:72 final size:72
Alignment explanation
Indices: 67330952--67331106 Score: 265
Period size: 72 Copynumber: 2.2 Consensus size: 72
67330942 GACATTGGCA
* * *
67330952 TTGTAAGGGTATGAGAATGGGCATCGAATTTCATGGAAATATAAAGATCATAAATTTGGCACATG
1 TTGTAAGGGTATGAGAATGGGCATCGAATTTCATGGAAATACAAACACCATAAATTTGGCACATG
67331017 GCATGAG
66 GCATGAG
*
67331024 TTGTAAGGGTATGAGAATGGGCATCGAATTTCATGGAAATACATACACCATAAATTTGGCACATG
1 TTGTAAGGGTATGAGAATGGGCATCGAATTTCATGGAAATACAAACACCATAAATTTGGCACATG
67331089 GCATGAG
66 GCATGAG
*
67331096 TTGTAATGGTA
1 TTGTAAGGGTA
67331107 AATTACACGC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 78 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (72 bp):
TTGTAAGGGTATGAGAATGGGCATCGAATTTCATGGAAATACAAACACCATAAATTTGGCACATG
GCATGAG
Found at i:67336715 original size:15 final size:15
Alignment explanation
Indices: 67336695--67336724 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67336685 TTCACTATTA
*
67336695 TGTCTTTTGTATTTT
1 TGTCTTTTATATTTT
67336710 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
67336725 ACATCTATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:67338505 original size:51 final size:44
Alignment explanation
Indices: 67338413--67338518 Score: 113
Period size: 46 Copynumber: 2.2 Consensus size: 44
67338403 AGTGATTATC
* * *
67338413 TTAATATTTAATTTAATTTAATGTTTATCTATTATTTTAATAAGTT
1 TTAATATTAAATTTAATCTAATGTTTATCTATTATTATAATAA--T
*
67338459 TTAATATTAAATTTAATCTAATTTTTATCTTGATAAATATTATAATAAT
1 TTAATATTAAATTTAATCTAATGTTTATC-T-AT---TATTATAATAAT
67338508 TTAATATTAAA
1 TTAATATTAAA
67338519 ATGATTAAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
46 26 0.51
47 1 0.02
48 2 0.04
49 12 0.24
51 10 0.20
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (44 bp):
TTAATATTAAATTTAATCTAATGTTTATCTATTATTATAATAAT
Found at i:67340012 original size:32 final size:32
Alignment explanation
Indices: 67339970--67340032 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
67339960 TTCCCAAAGT
67339970 TGGCCAAATTTCAAAACAAAATGGAAGGAAGC
1 TGGCCAAATTTCAAAACAAAATGGAAGGAAGC
*
67340002 TGGCCGAATTTCAAAACAAAATGGAAGGAAG
1 TGGCCAAATTTCAAAACAAAATGGAAGGAAG
67340033 GGCGTGGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.46, C:0.14, G:0.24, T:0.16
Consensus pattern (32 bp):
TGGCCAAATTTCAAAACAAAATGGAAGGAAGC
Found at i:67341965 original size:31 final size:30
Alignment explanation
Indices: 67341911--67341980 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
67341901 ATTCGAAAGA
* *
67341911 TTTTATTTATGTCACTAAATTATTAGGAATT
1 TTTTATTTAAGTCACTAAATTATTAAG-ATT
* **
67341942 TTTTATTTAAGTCATTAGGTTATTAAGATT
1 TTTTATTTAAGTCACTAAATTATTAAGATT
67341972 TTTT-TTTAA
1 TTTTATTTAA
67341981 AATTCAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 5 0.15
30 7 0.21
31 22 0.65
ACGTcount: A:0.30, C:0.04, G:0.10, T:0.56
Consensus pattern (30 bp):
TTTTATTTAAGTCACTAAATTATTAAGATT
Found at i:67342869 original size:19 final size:19
Alignment explanation
Indices: 67342845--67342906 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
67342835 AATCTTTAAG
67342845 GATATGCAATTTTAGATAT
1 GATATGCAATTTTAGATAT
*
67342864 GATATGCAATCTTAGATAT
1 GATATGCAATTTTAGATAT
*
67342883 GATATGCAATCTTGAAGATAT
1 GATATGCAAT-TT-TAGATAT
67342904 GAT
1 GAT
67342907 CTTGTAATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 28 0.74
20 1 0.03
21 9 0.24
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (19 bp):
GATATGCAATTTTAGATAT
Found at i:67348408 original size:18 final size:17
Alignment explanation
Indices: 67348385--67348423 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
67348375 AAAAAAAAAG
*
67348385 AAAAGAAAAGAAATAGTA
1 AAAAGAAAA-AAATAATA
67348403 AAAAGAAAAAAATAATA
1 AAAAGAAAAAAATAATA
67348420 AAAA
1 AAAA
67348424 TGGAGAGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (17 bp):
AAAAGAAAAAAATAATA
Found at i:67349374 original size:44 final size:44
Alignment explanation
Indices: 67349314--67349853 Score: 404
Period size: 44 Copynumber: 12.3 Consensus size: 44
67349304 CAGAGAAACA
*
67349314 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
** * * * * **
67349358 AGATCTAACA-CTCCTGTGCTTACAGCGAAGCAAATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
67349403 AG--CATGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * * **
67349446 AGACCTAACA-CTCCTGTGATTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
67349491 -G-GCATGGCATCCCTGTGTTTATAAGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
67349534 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * * * **
67349578 AGATCTGACATTTCTGTGATTACAGCGAAGTAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
67349623 AG--CATGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
67349666 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * * * **
67349710 AGATCTGACATTTCTGTGATTACAGCGAAGTAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
67349755 AG--CATGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * **
67349798 AGATTTGGCATCCCTGTATTTATAGGGAACAAATCGAAGATAAT
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
*
67349842 AAATCTGGCATC
1 AGATCTGGCATC
67349854 TCCATTTCGA
Statistics
Matches: 377, Mismatches: 93, Indels: 52
0.72 0.18 0.10
Matches are distributed among these distances:
42 3 0.01
43 52 0.14
44 263 0.70
45 59 0.16
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:67349469 original size:88 final size:87
Alignment explanation
Indices: 67349319--67349838 Score: 448
Period size: 88 Copynumber: 5.9 Consensus size: 87
67349309 AAACAAGATT
* *
67349319 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTAACACTCCTGTGCTTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACA-TCCTGTGATTACAGC
67349384 GAAGCAAATCGAAGATTTCAGCA
65 GAAGCAAATCGAAGATTTCAGCA
* *
67349407 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGACCTAACACTCCTGTGATTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACA-TCCTGTGATTACAGC
* *
67349472 GAAGCAGATCGAAGATTTCGGCA
65 GAAGCAAATCGAAGATTTCAGCA
* * * * * *
67349495 TGGCATCCCTGTGTTTATAAGGAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACAT-CCTGTGATTACAG
* **
67349559 GGAA-CAAATCGAAGATAGCAG-A
64 CGAAGCAAATCGAAGATTTCAGCA
* ** * * * * ** * * *
67349581 TCTGACATTTCTGTGATTACAGCGAAGTAGATCGAAGATTTCAG--CATGGCATCCCTATGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGACAT-CCTGTGATTA
* * * * **
67349644 TAGGGAA-CAAGTTGAAGATAGCAG-A
61 CAGCGAAGCAAATCGAAGATTTCAGCA
* *
67349669 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACA
1 --TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACA-TCCTGTGATTACA
* *
67349734 GCGAAGTAGATCGAAGATTTCAGCA
63 GCGAAGCAAATCGAAGATTTCAGCA
* * * * *
67349759 TGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGT-ATTTATA
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACAT-CCTGTGA-TTACA
*
67349822 GGGAA-CAAATCGAAGAT
63 GCGAAGCAAATCGAAGAT
67349839 AATAAATCTG
Statistics
Matches: 353, Mismatches: 64, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
86 1 0.00
87 41 0.12
88 285 0.81
89 24 0.07
90 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATCCTGTGATTACAGCG
AAGCAAATCGAAGATTTCAGCA
Found at i:67349765 original size:220 final size:219
Alignment explanation
Indices: 67349318--67349801 Score: 557
Period size: 220 Copynumber: 2.2 Consensus size: 219
67349308 GAAACAAGAT
* *
67349318 TTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTAACACTCCTGTGCTTACAG
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACACTCCTGTGATTACAG
*
67349383 CGAAGCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAG
66 CGAAGCAAATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGCAG
* ** * *
67349448 ACCTAACACTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCGGCATGGCATCCCTGTGTTTAT
131 ACCTAACACTCCTGTGATTACAGCGAAGCAAATCGAAGATAGCGGCATGACATCCCTGTGATTAT
*
67349513 AAGGAACAAGTTGAAGATAGCAGA
196 AAGGAACAAGTCGAAGATAGCAGA
* * *
67349537 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACA
1 -TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACACTCCTGTGATTACA
* * *
67349602 GCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGATAGC
65 GCGAAGCAAATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAGA-TCGAAGATAGC
** ** * * * * **
67349666 AGATTTGGCA-TCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATCTGACATTTCTGTG
129 AGACCTAACACT-CCTGTGATTACAGCGAAGCAAATCGAAGATAGCGGCA--TGACATCCCTGTG
* ** **
67349728 ATTA-CAGCGAAGTAGATCGAAGATTTCAGCA
191 ATTATAAG-GAACAAG-TCGAAGATAGCAG-A
* * *
67349759 -TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGAT
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGAT
67349802 TTGGCATCCC
Statistics
Matches: 224, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
218 1 0.00
219 17 0.08
220 195 0.87
221 10 0.04
222 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (219 bp):
TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACACTCCTGTGATTACAG
CGAAGCAAATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGCAG
ACCTAACACTCCTGTGATTACAGCGAAGCAAATCGAAGATAGCGGCATGACATCCCTGTGATTAT
AAGGAACAAGTCGAAGATAGCAGA
Found at i:67349848 original size:132 final size:132
Alignment explanation
Indices: 67349407--67349839 Score: 776
Period size: 132 Copynumber: 3.3 Consensus size: 132
67349397 GATTTCAGCA
* * * * *
67349407 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGACCTAACACTCCTGTGATTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACAGC
* * * *
67349472 GAAGCAGATCGAAGATTTCGGCATGGCATCCCTGTGTTTATAAGGAACAAGTTGAAGATAGCAGA
66 GAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
67349537 TT
131 TT
67349539 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACAGC
67349604 GAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
66 GAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
67349669 TT
131 TT
67349671 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACAGC
67349736 GAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
66 GAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
67349801 TT
131 TT
*
67349803 TGGCATCCCTGTATTTATAGGGAACAAATCGAAGATA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATA
67349840 ATAAATCTGG
Statistics
Matches: 291, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 291 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTTCTGTGATTACAGC
GAAGTAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
TT
Found at i:67350450 original size:19 final size:19
Alignment explanation
Indices: 67350426--67350487 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
67350416 AATCTTTAAG
67350426 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
67350445 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
67350464 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
67350485 GAT
1 GAT
67350488 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:67354906 original size:16 final size:16
Alignment explanation
Indices: 67354885--67354920 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
67354875 TTTGGTTCGC
*
67354885 TGTATTGGATTAGAGG
1 TGTATTGGAATAGAGG
67354901 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
67354917 TGTA
1 TGTA
67354921 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGAATAGAGG
Found at i:67354957 original size:45 final size:41
Alignment explanation
Indices: 67354901--67355010 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
67354891 GGATTAGAGG
*
67354901 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
67354943 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
67354986 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
67355011 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:67355158 original size:16 final size:16
Alignment explanation
Indices: 67355121--67355162 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
67355111 TTAATCATAT
*
67355121 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
67355137 TT-AAATATATTATAA
1 TTAAAATATATTATAA
67355152 TTAAAATATAT
1 TTAAAATATAT
67355163 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:67355169 original size:14 final size:15
Alignment explanation
Indices: 67355130--67355171 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
67355120 TTTAAACATA
*
67355130 ATTATTATTAAATAT
1 ATTATAATTAAATAT
67355145 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
67355159 A-TATAATTTAATA
1 ATTATAATTAAATA
67355172 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:67355221 original size:61 final size:61
Alignment explanation
Indices: 67355156--67355343 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
67355146 TTATAATTAA
67355156 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
67355217 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
67355276 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
67355337 AATATAT
1 AATATAT
67355344 GATACTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 24 0.25
61 37 0.38
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:67355289 original size:14 final size:15
Alignment explanation
Indices: 67355240--67355291 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
67355230 ATAAAATATA
67355240 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
67355255 TATTAAATATATTAT
1 AATTAAATATATTAT
67355270 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
67355283 AATTTAATA
1 AATTAAATA
67355292 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:67355337 original size:120 final size:120
Alignment explanation
Indices: 67355124--67355353 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
67355114 ATCATATTTA
67355124 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
67355189 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
67355244 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
67355309 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
67355354 TTTACTCAAA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:67355342 original size:59 final size:59
Alignment explanation
Indices: 67355159--67355342 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
67355149 TAATTAAAAT
67355159 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
67355218 ATAT-ATGATACTATAAAA-TATAAATTAA-CATAATTATTATTAAAT-ATATTATAATTAAA--
1 ATATAAT-TTA--ATAAAATTCTTAA-TAATC--AA-TATTCTTATATGA-ATT-TACTCAAATC
67355277 AT-
57 ATA
67355279 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
67355338 ATATA
1 ATATA
67355343 TGATACTATA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 7 0.07
59 20 0.21
60 10 0.11
61 15 0.16
62 7 0.07
63 12 0.13
64 6 0.06
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
Found at i:67365688 original size:30 final size:30
Alignment explanation
Indices: 67365654--67365714 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67365644 TCCTTAACTC
67365654 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67365684 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67365714 A
1 A
67365715 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67378660 original size:8 final size:8
Alignment explanation
Indices: 67378647--67378683 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
67378637 TTATGTTTAG
67378647 TATATTAT
1 TATATTAT
67378655 TATATTAT
1 TATATTAT
*
67378663 TATATTAA
1 TATATTAT
67378671 TATATTAT
1 TATATTAT
67378679 TATAT
1 TATAT
67378684 AATAAAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATATTAT
Found at i:67378784 original size:6 final size:6
Alignment explanation
Indices: 67378773--67378805 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
67378763 AACAGGGGAG
67378773 AAAGAA AAAGAA AAAGAA AAAGAA AAAGGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAA-GAA AA
67378806 TTTGAGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:67380331 original size:45 final size:45
Alignment explanation
Indices: 67380267--67380415 Score: 246
Period size: 45 Copynumber: 3.3 Consensus size: 45
67380257 CTGTTACCGC
*
67380267 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
67380312 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
67380357 TACTTTTACCGTTACCGATTCGGCACTTTGTGTGTCGGATATTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
67380402 TACT-ATACTGTTAC
1 TACTGTTACTGTTAC
67380416 TGTTACTGTT
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
44 8 0.08
45 90 0.92
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:67381787 original size:22 final size:22
Alignment explanation
Indices: 67381761--67381820 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
67381751 ACGCATCAGT
* *
67381761 ATATGAGAGTCCTTTGTGGGAC
1 ATATGAGAGCCCTTTATGGGAC
* *
67381783 GTATGAGAGCCCTATATGGGAC
1 ATATGAGAGCCCTTTATGGGAC
*
67381805 ATATGAAAGCCCTTTA
1 ATATGAGAGCCCTTTA
67381821 AGAGTGTTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (22 bp):
ATATGAGAGCCCTTTATGGGAC
Found at i:67384322 original size:30 final size:30
Alignment explanation
Indices: 67384280--67384336 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
67384270 TCTCTATTTT
67384280 CAATTATATCCCTAA-ATTTCAAAATTTTCA
1 CAATTATATCCCTAATA-TTCAAAATTTTCA
*
67384310 CAATT-TAGTCCCTATTATTCAAAATTT
1 CAATTATA-TCCCTAATATTCAAAATTT
67384337 AAAATTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 2 0.08
30 21 0.88
31 1 0.04
ACGTcount: A:0.37, C:0.19, G:0.02, T:0.42
Consensus pattern (30 bp):
CAATTATATCCCTAATATTCAAAATTTTCA
Found at i:67387212 original size:21 final size:21
Alignment explanation
Indices: 67387166--67387213 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
67387156 TAAAAATAAT
* *
67387166 AATTTTTTAACTTTCTTTATA
1 AATTTTTTAAATTTCTTTAAA
*
67387187 TATTTTTTAGAATTT-TTTAAA
1 AATTTTTTA-AATTTCTTTAAA
67387208 AATTTT
1 AATTTT
67387214 ATAATTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (21 bp):
AATTTTTTAAATTTCTTTAAA
Found at i:67387289 original size:20 final size:20
Alignment explanation
Indices: 67387241--67387300 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
67387231 GAATTTTGGG
*
67387241 ATTTTTATAAA-TATTTTGA
1 ATTTTTAAAAATTATTTTGA
67387260 A-TTTTAAAAATTATTTTGA
1 ATTTTTAAAAATTATTTTGA
*
67387279 ATTTTTGAAAATTATTTTGA
1 ATTTTTAAAAATTATTTTGA
67387299 AT
1 AT
67387301 AATTTTGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.22
19 10 0.27
20 19 0.51
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (20 bp):
ATTTTTAAAAATTATTTTGA
Found at i:67388478 original size:23 final size:23
Alignment explanation
Indices: 67388451--67388494 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
67388441 AGTTCTAATT
67388451 CTAAAAATTTA-ATAAATTTATAC
1 CTAAAAATTTACA-AAATTTATAC
*
67388474 CTAAACATTTACAAAATTTAT
1 CTAAAAATTTACAAAATTTAT
67388495 CAATTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (23 bp):
CTAAAAATTTACAAAATTTATAC
Found at i:67396132 original size:301 final size:303
Alignment explanation
Indices: 67395590--67396197 Score: 1130
Period size: 301 Copynumber: 2.0 Consensus size: 303
67395580 GTGACCTTTT
*
67395590 GGTTCTACTTGAATTAAGTTTTGTGATAAATAATTTATATATATGACATATATTTGAATGGTCAC
1 GGTTCTACTTGAATTAAGTTTTGTGATAAATAATTTATATATATGACATATAGTTGAATGGTCAC
67395655 TATGGGTTAAGCTTGAATGGTGAAATGGATAGGTGATATTTATGTATGACTTTTGAACCGAAATG
66 TATGGGTTAAGCTTGAATGGTGAAATGGATAGGTGATATTTATGTATGACTTTTGAACCGAAATG
67395720 TAAATGATGATGTTCATATGGGACTTGTATCCGAATGTAGCAAATGACTATTAATGTGATATGTT
131 TAAATGATGATGTTCATATGGGACTTGTATCCGAATGTAGCAAATGACTATTAATGTGATATGTT
*
67395785 GAATGAGATGTGTTAATATATGATTAAATATGCATTATATTTGATGTGTATCCGGGTTAAATCCC
196 GAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATGTGTATCCGGGTTAAATCCC
* * *
67395850 GCAGGCTTCGTGCTGGTATTATATCCGA-TTTAAA-TCCCACA
261 GCAAGCTTAGTGCTGGTATTATATCCGAGCTTAAAGTCCCACA
*
67395891 GGTTCTACTTGAATTAAGTTTTGTGATAAATAATTTATATATATGACATATAGTTGAGTGGTCAC
1 GGTTCTACTTGAATTAAGTTTTGTGATAAATAATTTATATATATGACATATAGTTGAATGGTCAC
67395956 TATGGGTTAAGCTTGAATGGTGAAATGGATAGGTGATATTTATGTATGACTTTTGAACCGAAATG
66 TATGGGTTAAGCTTGAATGGTGAAATGGATAGGTGATATTTATGTATGACTTTTGAACCGAAATG
67396021 TAAATGATGATGTTCATATGGGACTTGTATCCGAATGTAGCAAATGACTATTAATGTGATATGTT
131 TAAATGATGATGTTCATATGGGACTTGTATCCGAATGTAGCAAATGACTATTAATGTGATATGTT
67396086 GAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATGTGTATCCGGGTTAAATCCC
196 GAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATGTGTATCCGGGTTAAATCCC
* *
67396151 GCAAGCTTAGTGCTGGTATTATATTCGAGCTTAAAGTCCCGCA
261 GCAAGCTTAGTGCTGGTATTATATCCGAGCTTAAAGTCCCACA
67396194 GGTT
1 GGTT
67396198 TTGTGCTGGT
Statistics
Matches: 297, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
301 282 0.95
302 5 0.02
303 10 0.03
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (303 bp):
GGTTCTACTTGAATTAAGTTTTGTGATAAATAATTTATATATATGACATATAGTTGAATGGTCAC
TATGGGTTAAGCTTGAATGGTGAAATGGATAGGTGATATTTATGTATGACTTTTGAACCGAAATG
TAAATGATGATGTTCATATGGGACTTGTATCCGAATGTAGCAAATGACTATTAATGTGATATGTT
GAATGAGATGTGTTAATATATGATTAAATATGCATGATATTTGATGTGTATCCGGGTTAAATCCC
GCAAGCTTAGTGCTGGTATTATATCCGAGCTTAAAGTCCCACA
Found at i:67396506 original size:44 final size:44
Alignment explanation
Indices: 67396393--67396651 Score: 283
Period size: 44 Copynumber: 5.8 Consensus size: 44
67396383 AGCGATATAT
* *
67396393 GTGATTTTCGTGTAAGACCATGTCTGGGACGTTGGCAGCGATATAC
1 GTGA-TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT-TAC
* ** *
67396439 GTGATTTCGTGTAAGCCCGCGTCTGGGATATTGGCATCGATTA-
1 GTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATTAC
* * *
67396482 GTGATTTTCGTGTAAGACCACGTCTGGGACGTTGGCAGCGATATAC
1 GTGA-TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT-TAC
* *
67396528 TTGATTTCGTGTAAGACCGA-GTCTGGGATATTGGCATCGATTA-
1 GTGATTTCGTGTAAGACC-ATGTCTGGGACATTGGCATCGATTAC
* *
67396571 GTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGA-TAT
1 GTGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATTAC
* * **
67396615 TTGATTACACGTAAGACCATGTCTGGGACATTGGCAT
1 GTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
67396652 TGTACGAGCT
Statistics
Matches: 183, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
43 40 0.22
44 70 0.38
45 65 0.36
46 8 0.04
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (44 bp):
GTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATTAC
Found at i:67396552 original size:89 final size:89
Alignment explanation
Indices: 67396393--67396651 Score: 382
Period size: 89 Copynumber: 2.9 Consensus size: 89
67396383 AGCGATATAT
* *
67396393 GTGATTTTCGTGTAAGACCATGTCTGGGACGTTGGCAGCGATATACGTGATTTCGTGTAAGCCCG
1 GTGATTTTCGTGTAAGACCATGTCTGGGACGTTGGCAGCGATATACTTGATTTCGTGTAAGACCG
*
67396458 CGTCTGGGATATTGGCATCGATTA
66 AGTCTGGGATATTGGCATCGATTA
*
67396482 GTGATTTTCGTGTAAGACCACGTCTGGGACGTTGGCAGCGATATACTTGATTTCGTGTAAGACCG
1 GTGATTTTCGTGTAAGACCATGTCTGGGACGTTGGCAGCGATATACTTGATTTCGTGTAAGACCG
67396547 AGTCTGGGATATTGGCATCGATTA
66 AGTCTGGGATATTGGCATCGATTA
* * * **
67396571 GTGATTTACGTGTAAGACCATGTCTGGGACAG-TGGCATCGATAT--TTGATTACACGTAAGACC
1 GTGATTTTCGTGTAAGACCATGTCTGGGAC-GTTGGCAGCGATATACTTGATTTCGTGTAAGACC
*
67396633 -ATGTCTGGGACATTGGCAT
65 GA-GTCTGGGATATTGGCAT
67396652 TGTACGAGCT
Statistics
Matches: 157, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
86 1 0.01
87 31 0.20
89 124 0.79
90 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (89 bp):
GTGATTTTCGTGTAAGACCATGTCTGGGACGTTGGCAGCGATATACTTGATTTCGTGTAAGACCG
AGTCTGGGATATTGGCATCGATTA
Found at i:67398991 original size:5 final size:5
Alignment explanation
Indices: 67398981--67399013 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
67398971 ATACATGCCA
*
67398981 ATATT ATATT ATATT ATGTT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATA
67399014 ATATTATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:67401472 original size:25 final size:25
Alignment explanation
Indices: 67401444--67401494 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
67401434 CTGAATGAGG
*
67401444 AAAGCCTCTACTTTCCTGATTTGCT
1 AAAGCCCCTACTTTCCTGATTTGCT
67401469 AAAGCCCCTACTTTCCTGATTTGCT
1 AAAGCCCCTACTTTCCTGATTTGCT
67401494 A
1 A
67401495 CTATCAGTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (25 bp):
AAAGCCCCTACTTTCCTGATTTGCT
Found at i:67406807 original size:18 final size:19
Alignment explanation
Indices: 67406784--67406821 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
67406774 ATGTTTTATA
67406784 TAGTAA-ATTTCAAAAGTT
1 TAGTAATATTTCAAAAGTT
* *
67406802 TAGTAATGTTTCCAAAGTT
1 TAGTAATATTTCAAAAGTT
67406821 T
1 T
67406822 TCAGTCTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (19 bp):
TAGTAATATTTCAAAAGTT
Found at i:67407518 original size:6 final size:6
Alignment explanation
Indices: 67407509--67407533 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67407499 CAGAAATACA
67407509 AATCAG AATCAG AATCAG AATCAG A
1 AATCAG AATCAG AATCAG AATCAG A
67407534 TATCCTACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AATCAG
Found at i:67419871 original size:43 final size:41
Alignment explanation
Indices: 67419805--67419963 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 41
67419795 ATCGTATACA
* *
67419805 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGAAG-GGTCTTACACGTAATCAAA-ATCG
* * *
67419848 ATGCCACTGTCCCAGATAGGGTCTTACACGAAATC-AGATACG
1 ATGCCAATGTCCCAGA-AGGGTCTTACACGTAATCAAAAT-CG
* * *
67419890 ATGCCAATGTCCTAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGA-AGGGTCTTACACGT-AATCAAAA-TCG
* *
67419934 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGAAG-GGTCTTACACG
67419964 ATATCACATA
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 32 0.34
44 30 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (41 bp):
ATGCCAATGTCCCAGAAGGGTCTTACACGTAATCAAAATCG
Found at i:67419963 original size:86 final size:86
Alignment explanation
Indices: 67419792--67419969 Score: 222
Period size: 85 Copynumber: 2.1 Consensus size: 86
67419782 GAATAGATCG
* * *
67419792 GAAATC-GTATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACT
1 GAAATCAGTATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCACT
67419856 GTCCCAGATAGGGTCTTACAC
66 GTCCCAGATAGGGTCTTACAC
* *
67419877 GAAATCAG-ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAAAACAAA-AGTCGATGCCA
1 GAAATCAGTATACAATGCCAATGTCCCAGACATGGTCTTACACGT-AAACAAACA-TCGATGCC-
*
67419940 AC-GTCCCAGA-CGTGGTCTTACAC
63 ACTGTCCCAGATAG-GGTCTTACAC
*
67419963 GATATCA
1 GAAATCA
67419970 CATATCCAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
85 40 0.49
86 39 0.48
87 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (86 bp):
GAAATCAGTATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCACT
GTCCCAGATAGGGTCTTACAC
Found at i:67424468 original size:28 final size:29
Alignment explanation
Indices: 67424428--67424483 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
67424418 CACGGGCAAT
*
67424428 GACACGGGCGTGT-CTAGGCCTTGTGAAG
1 GACACGGGCGTGTGCTAGGCCGTGTGAAG
*
67424456 GACACGGGCGTGTGCTTGGCCGTGTGAA
1 GACACGGGCGTGTGCTAGGCCGTGTGAA
67424484 AACCCTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.16, C:0.21, G:0.41, T:0.21
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAAG
Found at i:67440933 original size:51 final size:51
Alignment explanation
Indices: 67440877--67441017 Score: 126
Period size: 51 Copynumber: 2.8 Consensus size: 51
67440867 TATTTTTATA
*
67440877 TTGTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTATTATAAATAAT
1 TTGTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTAATATAAATAAT
* ** * * * * * **
67440928 TTG--TTTAGTTTAATGTTTATTGTGA-TTTGTTAGGTTATGAATGTAATTTTT
1 TTGTTTTTAATTT-AT-TTTAAAGTTATTTTGTTA-GTAATTAATATAAATAAT
*
67440979 TTATTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATT
1 TTGTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATT
67441018 TTTGTGATTA
Statistics
Matches: 66, Mismatches: 18, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
49 7 0.11
50 9 0.14
51 34 0.52
52 9 0.14
53 7 0.11
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (51 bp):
TTGTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTAATATAAATAAT
Found at i:67440993 original size:102 final size:105
Alignment explanation
Indices: 67440880--67441140 Score: 325
Period size: 110 Copynumber: 2.4 Consensus size: 105
67440870 TTTTATATTG
67440880 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTATTATAAATAATTTGTTTAGTTTAATGTT
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTATTATAAATAATTTGTTTAGTTTAATGTT
*
67440945 TATTGTGAT-TTGTTAGGTT-ATGAATGTAAT-TTTT-TTA-
66 TATTGTGATCTT-TTAGATTAAT-AATGTAATCTTTTATTAC
* **
67440982 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTTTTGTGATTAGGTTAATTGTTTGTTTAGT
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAA----T-T-ATTA--TAAATAATTTGTTTAGT
*
67441047 TTAATGTTTATTGTTATCTTTTAGATTAATAATGTAATCTTTTATTAC
58 TTAATGTTTATTGTGATCTTTTAGATTAATAATGTAATCTTTTATTAC
* *
67441095 TTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAACTAATATAAAT
1 -TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTATTATAAAT
67441141 TTGAAAAAAA
Statistics
Matches: 137, Mismatches: 8, Indels: 24
0.81 0.05 0.14
Matches are distributed among these distances:
102 34 0.25
106 5 0.04
107 1 0.01
108 7 0.05
109 1 0.01
110 44 0.32
111 8 0.06
112 3 0.02
114 34 0.25
ACGTcount: A:0.28, C:0.02, G:0.11, T:0.59
Consensus pattern (105 bp):
TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAATTATTATAAATAATTTGTTTAGTTTAATGTT
TATTGTGATCTTTTAGATTAATAATGTAATCTTTTATTAC
Found at i:67441052 original size:110 final size:113
Alignment explanation
Indices: 67440927--67441129 Score: 326
Period size: 110 Copynumber: 1.8 Consensus size: 113
67440917 TTATAAATAA
*
67440927 TTTGTTTAGTTTAATGTTTATTGTGAT-TTGTTAGGTT-ATGAATGTAAT-TTTT-TTA-TTTTT
1 TTTGTTTAGTTTAATGTTTATTGTGATCTT-TTAGATTAAT-AATGTAATCTTTTATTACTTTTT
67440987 AATTTATTTTAAAGTTATTTTGTTAGTAATTTTTGTGATTAGGTTAATTG
64 AATTTATTTTAAAGTTATTTTGTTAGTAATTTTTGTGATTAGGTTAATTG
*
67441037 TTTGTTTAGTTTAATGTTTATTGTTATCTTTTAGATTAATAATGTAATCTTTTATTACTTTTTTA
1 TTTGTTTAGTTTAATGTTTATTGTGATCTTTTAGATTAATAATGTAATCTTTTATTAC-TTTTTA
67441102 ATTTATTTTAAAGTTATTTTGTTAGTAA
65 ATTTATTTTAAAGTTATTTTGTTAGTAA
67441130 CTAATATAAA
Statistics
Matches: 85, Mismatches: 2, Indels: 8
0.89 0.02 0.08
Matches are distributed among these distances:
110 40 0.47
111 8 0.09
112 3 0.04
114 34 0.40
ACGTcount: A:0.25, C:0.01, G:0.13, T:0.60
Consensus pattern (113 bp):
TTTGTTTAGTTTAATGTTTATTGTGATCTTTTAGATTAATAATGTAATCTTTTATTACTTTTTAA
TTTATTTTAAAGTTATTTTGTTAGTAATTTTTGTGATTAGGTTAATTG
Found at i:67444470 original size:25 final size:25
Alignment explanation
Indices: 67444442--67444489 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
67444432 TAAATAATCA
67444442 ATTAGATA-TACTTATTAATATATTT
1 ATTA-ATATTACTTATTAATATATTT
* *
67444467 ATTAATATTATTTATTATTATAT
1 ATTAATATTACTTATTAATATAT
67444490 GGAAAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 3 0.15
25 17 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
ATTAATATTACTTATTAATATATTT
Found at i:67444480 original size:13 final size:12
Alignment explanation
Indices: 67444442--67444489 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
67444432 TAAATAATCA
*
67444442 ATTAGATATACTT
1 ATTA-ATATATTT
67444455 ATTAATATATTT
1 ATTAATATATTT
67444467 ATTAATATTATTT
1 ATTAATA-TATTT
*
67444480 ATTATTATAT
1 ATTAATATAT
67444490 GGAAAATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
12 17 0.53
13 15 0.47
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (12 bp):
ATTAATATATTT
Found at i:67445136 original size:12 final size:12
Alignment explanation
Indices: 67445119--67445147 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67445109 TAAATAAATA
67445119 ATATTAATTAAT
1 ATATTAATTAAT
67445131 ATATTAATTAAT
1 ATATTAATTAAT
67445143 -TATTA
1 ATATTA
67445148 TATTTAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATATTAATTAAT
Found at i:67445142 original size:16 final size:16
Alignment explanation
Indices: 67445121--67445151 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67445111 AATAAATAAT
67445121 ATTAATTAATATATTA
1 ATTAATTAATATATTA
*
67445137 ATTAATTATTATATT
1 ATTAATTAATATATT
67445152 TAATCATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTAATTAATATATTA
Found at i:67445272 original size:12 final size:12
Alignment explanation
Indices: 67445255--67445288 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
67445245 TTGTTGAATA
67445255 ATATTAATAAAT
1 ATATTAATAAAT
67445267 ATATTAATAAAT
1 ATATTAATAAAT
*
67445279 ATGTTAATAA
1 ATATTAATAA
67445289 TTTATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (12 bp):
ATATTAATAAAT
Found at i:67445336 original size:21 final size:22
Alignment explanation
Indices: 67445303--67445343 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
67445293 TTTAAAAGGA
**
67445303 AAATAATTTATTTAT-TATTTG
1 AAATAATAAATTTATCTATTTG
67445324 AAATAATAAATTTATCTATT
1 AAATAATAAATTTATCTATT
67445344 AATTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
AAATAATAAATTTATCTATTTG
Found at i:67446693 original size:18 final size:18
Alignment explanation
Indices: 67446670--67446704 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67446660 GGCCCAAAAA
67446670 GCCCACACGCCCGTGTGG
1 GCCCACACGCCCGTGTGG
* *
67446688 GCCCACATGCCTGTGTG
1 GCCCACACGCCCGTGTG
67446705 TCACACACAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.40, G:0.31, T:0.17
Consensus pattern (18 bp):
GCCCACACGCCCGTGTGG
Found at i:67446807 original size:12 final size:12
Alignment explanation
Indices: 67446786--67446815 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67446776 CATGTATCGT
*
67446786 CACACAGCCTAC
1 CACACGGCCTAC
67446798 CACACGGCCTAC
1 CACACGGCCTAC
67446810 CACACG
1 CACACG
67446816 CTTGTATGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.50, G:0.13, T:0.07
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:67459195 original size:652 final size:654
Alignment explanation
Indices: 67457792--67459423 Score: 2677
Period size: 652 Copynumber: 2.5 Consensus size: 654
67457782 GACAAGTGTT
67457792 ATAATAATTTTAATTATTATCAGATCCAAGCAGGAATTGATTTAATAACAACAGCTCAGCACGTA
1 ATAATAATTTTAATTATTATCAGATCCAAGCAGGAATTGATTTAATAACAACAGCTCAGCACGTA
*
67457857 CTTCAACATTAGAATTATAAACTTTGGACTGATGGAAGAAGTATAGTGGCTGATGATACTGAAAA
66 CTTCAACATTAGAATTATAAACTTTGGACTGATGGAAGAAGGATAGTGGCTGATGATACTGAAAA
*
67457922 TATCCAGAAAGATAGAGACGAAGAATCTCTGAAGCTGTTATAAAAGATAGCTGATATAGAGATTG
131 TATCCAGAAAGATAGAGACGAAGAATCTCTGAAGCTGTTAAAAAAGATAGCTGATATAGAGATTG
* * * * *
67457987 ATGATTTTCCGTTAGAAATAATAGAGGAAATCGAAAAAACGTGGGAGTCTTGGAATTCACCAAGA
196 ATGATTTTCCATAAAAAATAATAGAGGAAATCG-AAATACGTGGGAGACTTGGAATTCACCAAGA
* *
67458052 CTGTCATCAGATTTATTACACTTAGATGAAATAGAGTTACTGAATCTAGACAACATCCAAGAAGG
260 CTGTCATCAGATTCATTACACTTAGATGAAATAGAGTTAATGAATCTAGACAACATCCAAGAAGG
*
67458117 ATAAAGACAAAATAAGATAACCATGTGGAAGCACACCAAGAAATTCAAGATTGGTGGTAACTTAA
325 ATAAAGACAAAATAAGATAACCACGTGGAAGCACACCAAGAAATTCAAGATTGGTGGTAACTTAA
67458182 ACAACAAGGCATCTATAAGCAAACAAAAAGTTGTTGTGATATTGATGTGAAAAATGCCAGGCTAC
390 ACAACAAGGCATCTATAAGCAAAC-AAAA-------TGATATTGATGTGAAAAATGCCAGGCTAC
* * * *
67458247 GTGGAAGCTACAATCAGTTCATCACTATCAGAAATATTGTGCGAGATTGAAGAAGAATTGAATAG
447 ATGGAAGCTACAATCAATTCATCACTATCAGAAATACTGTGCGAGATTGAAGAAGAATTAAATAG
67458312 AGTTTAAGAATTTTACTATAAATAGCGATGTATGAAGCCTAAACAAGGCATCAAAAAATAGTTTA
512 AGTTTAAGAATTTTACTATAAATAGCGATGTATGAAGCCTAAACAAGGCATCAAAAAATAGTTTA
*
67458377 GAAATCTTTTCTTTTACTTTCAATATTCTCTCTTTGTCAATAATAAATATATTAATAAATTATTT
577 GAAATCTTTTCTTTTACTTTCAATACTCTCTCTTTGTCAATAATAAATATATTAATAAATTATTT
67458442 AAAAGACATTTTA
642 AAAAGACATTTTA
67458455 ATAATAATTTTAATTATTATCAGATCCAAGCAGGAATTGATTTAATAACAACAGCTCAGCACGTA
1 ATAATAATTTTAATTATTATCAGATCCAAGCAGGAATTGATTTAATAACAACAGCTCAGCACGTA
** * *
67458520 CTTCAACACCAGAATTTTAAACTTTGGACTGATGGAAGAAGGATAGTGGCTGATGATAATGGAAA
66 CTTCAACATTAGAATTATAAACTTTGGACTGATGGAAGAAGGATAGTGGCTGATGATACT-GAAA
*
67458585 A-ATCCAAAAAGATAGAGACGAAGAATCTCTGAAGCTGTTAAAAAAGATAGCTGATATAGAGATT
130 ATATCCAGAAAGATAGAGACGAAGAATCTCTGAAGCTGTTAAAAAAGATAGCTGATATAGAGATT
* *
67458649 GATGATTTTCCATAAAAAATAATAGAGGAAATCAGAAATACGTAGGAGACTTGGAATTCACCCAG
195 GATGATTTTCCATAAAAAATAATAGAGGAAATC-GAAATACGTGGGAGACTTGGAATTCACCAAG
* *
67458714 ACTGTCATCAGATTCATTAAACCTAGATGAAATAGAGTTAATGAATCTAGACAACATCCAAGAAG
259 ACTGTCATCAGATTCATTACACTTAGATGAAATAGAGTTAATGAATCTAGACAACATCCAAGAAG
* *
67458779 GATAAAGACAAAATAAGCTAGCCACGTGGAAGCACACCAAGAAATTCAAGATTGGTGGTAACTTA
324 GATAAAGACAAAATAAGATAACCACGTGGAAGCACACCAAGAAATTCAAGATTGGTGGTAACTTA
* * *
67458844 AACAACAAGGCATTTATAAGCAAAC-AAA-GA-GTTGATGTGAAAAATGGCAGGCTACATGGAAG
389 AACAACAAGGCATCTATAAGCAAACAAAATGATATTGATGTGAAAAATGCCAGGCTACATGGAAG
67458906 CTACAATCAATTCATC-CTTATCAGAAATACTGTGCCG-GATTGAAGTAA-AATTAAATAGAGTT
454 CTACAATCAATTCATCAC-TATCAGAAATACTGTG-CGAGATTGAAG-AAGAATTAAATAGAGTT
* * *
67458968 TAGGAATTTTGCTATAAATAGCGATGTATGAAGCCTAAACAAGGCATCGAAAAATAGTTTAGAAA
516 TAAGAATTTTACTATAAATAGCGATGTATGAAGCCTAAACAAGGCATCAAAAAATAGTTTAGAAA
67459033 TCTTTTCTTTTACTTTCAATACTCTCTCTTTGTCAATAATAAATATATTAATAAATTATTTAAAA
581 TCTTTTCTTTTACTTTCAATACTCTCTCTTTGTCAATAATAAATATATTAATAAATTATTTAAAA
*
67459098 GACCTTTTA
646 GACATTTTA
* *
67459107 ATAATAATTTTAATTATTATCAGATACAAGCAGGAATTGATTTAATAACAACAGCTCAGCACCTA
1 ATAATAATTTTAATTATTATCAGATCCAAGCAGGAATTGATTTAATAACAACAGCTCAGCACGTA
*
67459172 CTTCAACATTAGAATTATAAACTTTAGACTGATGGAAGAAGGATAGTGGCTGATGATACTGAAAA
66 CTTCAACATTAGAATTATAAACTTTGGACTGATGGAAGAAGGATAGTGGCTGATGATACTGAAAA
* * * *
67459237 TATCCAGAAAGATAGAGAAGAAGAATCTCTGAAGTTATTAAAAAAGATAGTTGATATAGAGATTG
131 TATCCAGAAAGATAGAGACGAAGAATCTCTGAAGCTGTTAAAAAAGATAGCTGATATAGAGATTG
*
67459302 ATGATTTTCTATAAAAAAATAATAGAGGAAATCTGAAATACGTGGGAGACTTGGAATTCACCAAG
196 ATGATTTTCCAT-AAAAAATAATAGAGGAAATC-GAAATACGTGGGAGACTTGGAATTCACCAAG
* *
67459367 ACTGTCATCA-ATTCATTACAGTTAGATGAAATAGAGTTAATGAATATAGACAACATC
259 ACTGTCATCAGATTCATTACACTTAGATGAAATAGAGTTAATGAATCTAGACAACATC
67459424 TGTAACACCC
Statistics
Matches: 909, Mismatches: 53, Indels: 25
0.92 0.05 0.03
Matches are distributed among these distances:
651 6 0.01
652 445 0.49
653 65 0.07
661 3 0.00
663 384 0.42
664 6 0.01
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (654 bp):
ATAATAATTTTAATTATTATCAGATCCAAGCAGGAATTGATTTAATAACAACAGCTCAGCACGTA
CTTCAACATTAGAATTATAAACTTTGGACTGATGGAAGAAGGATAGTGGCTGATGATACTGAAAA
TATCCAGAAAGATAGAGACGAAGAATCTCTGAAGCTGTTAAAAAAGATAGCTGATATAGAGATTG
ATGATTTTCCATAAAAAATAATAGAGGAAATCGAAATACGTGGGAGACTTGGAATTCACCAAGAC
TGTCATCAGATTCATTACACTTAGATGAAATAGAGTTAATGAATCTAGACAACATCCAAGAAGGA
TAAAGACAAAATAAGATAACCACGTGGAAGCACACCAAGAAATTCAAGATTGGTGGTAACTTAAA
CAACAAGGCATCTATAAGCAAACAAAATGATATTGATGTGAAAAATGCCAGGCTACATGGAAGCT
ACAATCAATTCATCACTATCAGAAATACTGTGCGAGATTGAAGAAGAATTAAATAGAGTTTAAGA
ATTTTACTATAAATAGCGATGTATGAAGCCTAAACAAGGCATCAAAAAATAGTTTAGAAATCTTT
TCTTTTACTTTCAATACTCTCTCTTTGTCAATAATAAATATATTAATAAATTATTTAAAAGACAT
TTTA
Found at i:67460746 original size:39 final size:39
Alignment explanation
Indices: 67460695--67460769 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
67460685 TGAATGAATA
*
67460695 AAATATCTTAATGTCTGTAATACCCGTATATGATATATG
1 AAATATCTTAATGACTGTAATACCCGTATATGATATATG
67460734 AAATATCTTAATGACTGTAATACCCGTATATGATAT
1 AAATATCTTAATGACTGTAATACCCGTATATGATAT
67460770 GTATATAGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (39 bp):
AAATATCTTAATGACTGTAATACCCGTATATGATATATG
Found at i:67464329 original size:23 final size:23
Alignment explanation
Indices: 67464303--67464372 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 23
67464293 GATGGATTAT
67464303 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGGAGG
*
67464326 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGGAGG
*
67464354 ATTATACTGGTGTGTTTGG
1 ATTATTCTGGTGTGTTTGG
67464373 TTGGACATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
23 13 0.33
24 1 0.03
25 3 0.08
26 3 0.08
27 2 0.05
28 17 0.44
ACGTcount: A:0.17, C:0.04, G:0.34, T:0.44
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGGAGG
Found at i:67464329 original size:28 final size:28
Alignment explanation
Indices: 67464276--67464359 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
67464266 CACTTTGTGC
67464276 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
67464305 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
67464333 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
67464360 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Done.