Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 208 of 310
Found at i:68190079 original size:13 final size:13
Alignment explanation
Indices: 68190061--68190090 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
68190051 ATTGTTATTT
68190061 TTTTATTCTAATA
1 TTTTATTCTAATA
*
68190074 TTTTATTTTAATA
1 TTTTATTCTAATA
68190087 TTTT
1 TTTT
68190091 TTTCATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTATTCTAATA
Found at i:68203151 original size:10 final size:10
Alignment explanation
Indices: 68203138--68203174 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
68203128 AGATATAGAT
68203138 AAAAATATAA
1 AAAAATATAA
*
68203148 AAAAAAAT-A
1 AAAAATATAA
68203157 AAAAA-ATAA
1 AAAAATATAA
68203166 AAAAATATA
1 AAAAATATA
68203175 TGTAATGGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
8 2 0.08
9 12 0.50
10 10 0.42
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATATAA
Found at i:68203157 original size:18 final size:18
Alignment explanation
Indices: 68203136--68203170 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68203126 ATAGATATAG
*
68203136 ATAAAAATATAAAAAAAA
1 ATAAAAAAATAAAAAAAA
68203154 ATAAAAAAATAAAAAAA
1 ATAAAAAAATAAAAAAA
68203171 TATATGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
ATAAAAAAATAAAAAAAA
Found at i:68203159 original size:7 final size:8
Alignment explanation
Indices: 68203148--68203172 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
68203138 AAAAATATAA
68203148 AAAAAAAT
1 AAAAAAAT
68203156 AAAAAAAT
1 AAAAAAAT
68203164 AAAAAAAT
1 AAAAAAAT
68203172 A
1 A
68203173 TATGTAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:68205629 original size:3 final size:3
Alignment explanation
Indices: 68205598--68205653 Score: 60
Period size: 3 Copynumber: 18.7 Consensus size: 3
68205588 TGTCTAACAC
* * * *
68205598 TAT TAT TTT TAT TTT TAT TTT TA- TAT TAT TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
68205645 TAT ATAT TA
1 TAT -TAT TA
68205654 GTGTATATGT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
2 2 0.05
3 38 0.88
4 3 0.07
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:68205855 original size:133 final size:134
Alignment explanation
Indices: 68205624--68206860 Score: 1117
Period size: 133 Copynumber: 8.8 Consensus size: 134
68205614 ATTTTTATAT
*
68205624 TATTATTATTACTATTATTATTATATATTAGTGTATATGTTTTTATTATATACGTATATGTATTT
1 TATTATTATTAGTATTATTATTAT-TATTAGTGTATA--TTTTTATTATATACG-ATA--TA--T
* * * *
68205689 ATATTTACACATAGTATTATTTTTTTTAATTACTTTATTTTAATATTTTTATTATATTACATTTG
58 ATATTT--ATATA-TAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACATTTG
*
68205754 CTTTTTGTATTTCAA
120 TTTTTTGTATTTCAA
* *
68205769 TATTATTATTACTATTATTATTATTATTAGTGTATATTCTTATTATATACG-TATATATATTTAT
1 TATTATTATTAGTATTATTATTATTATTAGTGTATATTTTTATTATATACGATATATATATTTAT
* * *
68205833 ATATAATACTATTTTTAATTACTTTATTTTAATATTTTTATTATATTACATTTGCTTTTTGTATT
66 ATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACATTTGTTTTTTGTATT
68205898 TCAA
131 TCAA
* *
68205902 TATTATTATTACTATTATTATTATTATTAGTGTATATTCTTATTATATACG-TATATATATTTAT
1 TATTATTATTAGTATTATTATTATTATTAGTGTATATTTTTATTATATACGATATATATATTTAT
* *
68205966 ATATAATACTATTTTTAATTACTTTATTTTAACATTATTATTATATTTAC-TTT-TTTTTTGTAT
66 ATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATA-TTACATTTGTTTTTTGTAT
68206029 TTCATTA
130 TTCA--A
* * * *
68206036 TTATTGCTAGTATTATTATTATTATTATTATTAGTGTATGTTTTT-TTATATAGGTATATATATA
1 -TA-T--TATTATTAGTATTATTATTATTATTAGTGTATATTTTTATTATATACG-ATATATATA
* * * ** *
68206100 TTTTTACATATAGTATTGTTTTTAATTACTTTATTTTAATATTATTATTATATTATGTTTATTTT
61 --TTTATATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTA-CATT-TGTT
*
68206165 TTTTGTATTTCAT
122 TTTTGTATTTCAA
* *
68206178 TATTATT-TCTAGTATTATTATTATTATTATTAGTATATGTTTTATTATATATGTATATATATAT
1 TATTATTAT-TAGTATTATTATTATTATTAGT-GTATAT-TTTTATTATATACG---ATATATAT
* * *
68206242 ATTTATATATAGTATT-TTTTTAATTACTTTATTTT-A-A-TATTATTATATTATATTTACTTTT
60 ATTTATATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACATTT-GTTTT
68206303 TTCGTATTTCATTA
124 TT-GTATTTCA--A
* * * * * *
68206317 CTATTGTTAGCATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATAGGTATATATATA
1 -TATTATT---ATTAGTATTATTATTATTATTAGTGTATATTTTTATTATATACG---ATATATA
* ** *
68206382 TATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTATGTTTATTTT
59 TATTTATATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACATTT-GTTT
*
68206447 TTTGTATTTCAT
123 TTTGTATTTCAA
* * *
68206459 TATTATT-TCTAGTATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATGTATATATA
1 TATTATTAT-TAGTATTATTA---TTATTATTAGT-GTATAT-TTTTATTATATACG-ATATATA
* **
68206523 TATTTATATATAGTATT-TTTTTAATTACTTTATTTT-A-A-TATTATTATATTATGTTTAGTTT
59 TATTTATATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACATTT-GTTT
*
68206584 TTTGTATTTCAT
123 TTTGTATTTCAA
* * * *
68206596 TATTATT-TCTAGTATTATTATTCTTATTAATATTAGTATGTGTTTTATTATATATGTATATATA
1 TATTATTAT-TAGTATTATTA---TTATTATTAGT-GTATAT-TTTTATTATATACG-ATATATA
*
68206660 TATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTAC--TT-T
59 TATTTATATATAATATTATTTTTAATTACTTTATTTTAATATTA-T-TATTATA-TTACATTTGT
* *
68206722 TATTTGTATTTCAT
121 TTTTTGTATTTCAA
* * * * **
68206736 TACTATTGTTAGTATTATTATCATTATTAATATTAGTCTATGTTTTATTATATGTATATATAAAT
1 TATTATTATTAGTATTA-T-T-ATTA-T--TATTAGTGTA--TATT-TT-TAT-TATATA-CGAT
* * *
68206801 ATATATATTTATATATAGTATCATTTTTAATTACTTTATTTTAATAGTATTATTATATTA
54 ATATATATTTATATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTA
68206861 TATGCCTTCC
Statistics
Matches: 971, Mismatches: 61, Indels: 122
0.84 0.05 0.11
Matches are distributed among these distances:
132 13 0.01
133 173 0.18
134 9 0.01
135 3 0.00
136 16 0.02
137 145 0.15
138 89 0.09
139 16 0.02
140 86 0.09
141 153 0.16
142 51 0.05
143 60 0.06
144 50 0.05
145 52 0.05
146 55 0.06
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (134 bp):
TATTATTATTAGTATTATTATTATTATTAGTGTATATTTTTATTATATACGATATATATATTTAT
ATATAATATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACATTTGTTTTTTGTATT
TCAA
Found at i:68206130 original size:141 final size:140
Alignment explanation
Indices: 68205630--68206859 Score: 1365
Period size: 141 Copynumber: 8.8 Consensus size: 140
68205620 ATATTATTAT
* *
68205630 TATTACTATTATTATTATATATTAGTGTATATGTTTTTATTATATACGTATATGTATTTATATTT
1 TATTATTATTATTATTAT-TATTAGTG--TATG-TTTTATTATATACGTATA--TATATAT-TTT
* * * *
68205695 ACACATAGTATTATTTTTTTTAATTACTTTATTTTAATATTTTTATTATA-TTACATTTGCTTTT
59 ATATATAGTATTA---TTTTTAATTACTTTATTTTAATATTATTATTATATTTAC-TTT-TTTTT
*
68205759 TGTATTTCA--A-TA-T--TAT
119 TGTATTTCATTATTATTGCTAG
* *
68205775 TATTACTATTATTATTATTATTAGTGTATATTCTTATTATATACG--TATATATA-TTTATATAT
1 TATTATTATTATTATTATTATTAGTGTATGTT-TTATTATATACGTATATATATATTTTATATAT
* * * *
68205837 AATACTATTTTTAATTACTTTATTTTAATATTTTTATTATA-TTACATTTGCTTTTTGTATTTCA
65 AGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTTAC-TTT-TTTTTTGTATTTCA
*
68205901 --A-TA-T--TAT
128 TTATTATTGCTAG
* *
68205908 TATTACTATTATTATTATTATTAGTGTATATTCTTATTATATACG--TATATATA-TTTATATAT
1 TATTATTATTATTATTATTATTAGTGTATGTT-TTATTATATACGTATATATATATTTTATATAT
* * *
68205970 AATACTATTTTTAATTACTTTATTTTAACATTATTATTATATTTACTTTTTTTTTGTATTTCATT
65 AGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTTACTTTTTTTTTGTATTTCATT
68206035 ATTATTGCTAG
130 ATTATTGCTAG
* * *
68206046 TATTATTATTATTATTATTATTAGTGTATGTTTTTTTATATAGGTATATATATATTTTTACATAT
1 TATTATTATTATTATTATTATTAGTGTATGTTTTATTATATACGTATATATATA-TTTTATATAT
* **
68206111 AGTATTGTTTTTAATTACTTTATTTTAATATTATTATTATATTATGTTTATTTTTTTTGTATTTC
65 AGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATT-T-ACT-TTTTTTTTGTATTTC
*
68206176 ATTATTATTTCTAG
127 ATTATTATTGCTAG
* *
68206190 ---TATTATTATTATTATTATTAGTATATGTTTTATTATATATGTATATATATATATTTATATAT
1 TATTATTATTATTATTATTATTAGTGTATGTTTTATTATATACGTATATATATAT-TTTATATAT
*
68206252 AGTATT-TTTTTAATTACTTTATTTTAATATTATTATATTATATTTAC--TTTTTTCGTATTTCA
65 AGTATTATTTTTAATTACTTTATTTTAATATTA-T-TATTATATTTACTTTTTTTTTGTATTTCA
* *
68206314 TTACTATTGTTAG
128 TTATTATTGCTAG
* * * *
68206327 CATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATAGGTATATATATATATTTATATA
1 TATTATTATTATTATTATTATTAGTGTATG-TTTTATTATATACGTATATATATAT-TTTATATA
**
68206392 TAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTATGTTTATTTTTTTGTATTTC
64 TAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATT-TACTT-TTTTTTTGTATTTC
*
68206457 ATTATTATTTCTAG
127 ATTATTATTGCTAG
* * * *
68206471 TATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATGTATATATATA-TTTATATATA
1 TATTATTATTATTATTATTATTAGTGTATGTTTTATTATATACGTATATATATATTTTATATATA
**
68206535 GTATT-TTTTTAATTACTTTATTTTAATATTATTA-TATTATGTT--TAGTTTTTTGTATTTCAT
66 GTATTATTTTTAATTACTTTATTTTAATATTATTATTA-TAT-TTACTTTTTTTTTGTATTTCAT
*
68206596 TATTATTTCTAG
129 TATTATTGCTAG
* * * * *
68206608 TATTATTATTCTTATTAATATTAGTATGTGTTTTATTATATATGTATATATATA-TTTATATATA
1 TATTATTATTATTATTATTATTAGTGTATGTTTTATTATATACGTATATATATATTTTATATATA
*
68206672 GTATTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTAC-TTTTATTTGTATTTCAT
66 GTATTATTTTTAATTACTTTATTTTAATATTA-T-TATTATATTTACTTTTTTTTTGTATTTCAT
* *
68206736 TACTATTGTTAG
129 TATTATTGCTAG
* * * **
68206748 TATTATTATCATTATTAATATTAGTCTATGTTTTATTATATGTATATATAAATATATATATTTAT
1 TATTATTATTATTATTATTATTAGTGTATGTTTTATTATA--TACGTAT--ATATATAT-TTTAT
* *
68206813 ATATAGTATCATTTTTAATTACTTTATTTTAATAGTATTATTATATT
61 ATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATT
68206860 ATATGCCTTC
Statistics
Matches: 981, Mismatches: 63, Indels: 83
0.87 0.06 0.07
Matches are distributed among these distances:
132 13 0.01
133 168 0.17
134 5 0.01
135 2 0.00
136 13 0.01
137 129 0.13
138 64 0.07
139 13 0.01
140 159 0.16
141 173 0.18
142 57 0.06
143 24 0.02
144 102 0.10
145 19 0.02
146 40 0.04
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (140 bp):
TATTATTATTATTATTATTATTAGTGTATGTTTTATTATATACGTATATATATATTTTATATATA
GTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTTACTTTTTTTTTGTATTTCATTA
TTATTGCTAG
Found at i:68210675 original size:3 final size:3
Alignment explanation
Indices: 68210630--68210658 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
68210620 TGTATTTCAA
68210630 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
68210659 GTGTATATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:68210851 original size:141 final size:140
Alignment explanation
Indices: 68210567--68211587 Score: 1276
Period size: 141 Copynumber: 7.3 Consensus size: 140
68210557 CACTTAGTAT
* * * *
68210567 TATTTTTTTTAATTACTTTATTTTAATATTTTTATTATA-TTACATTTGCTTTTTGTATTTCAAT
1 TATTATTTTTAATTACTTTATTTTAATATTATTATTATATTTAC-TTT-TTTTTTGTATTTCATT
* * * * *
68210631 ATTA-T--TATTATTATTATTATTATTATTAGT-GTATAT-TCTTATTATATACG--TATATATA
64 ATTATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATATAGGTATATATATA
*
68210689 -TTTATATATAA
129 TTTTATATATAG
* *
68210700 TACTATTTTTAATTACTTTATTTTAACATTATTATTATATTTACTTTTTTTTTGTATTTCATTAT
1 TATTATTTTTAATTACTTTATTTTAATATTATTATTATATTTACTTTTTTTTTGTATTTCATTAT
* * *
68210765 TATTGCTAGTATTATTATTATTATTATTATTAGTGTATGTTTTTTTATATAGGTATATATATATT
66 TATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATATAGGTATATATATA-T
*
68210830 TTTACATATAG
130 TTTATATATAG
* **
68210841 TATTGTTTTTAATTACTTTATTTTAATATTATTATTATATTATGTTTATTTTTTTTGTATTTCAT
1 TATTATTTTTAATTACTTTATTTTAATATTATTATTATATT-T-ACT-TTTTTTTTGTATTTCAT
* *
68210906 TATTATTTCTAGTATTATTATTATTA-T--TATTAGTATATGTTTTATTATATATGTATATATAT
63 TATTATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATATAGGTATATATAT
68210968 ATATTTATATATAG
128 AT-TTTATATATAG
*
68210982 TATT-TTTTTAATTACTTTATTTTAATATTATTATATTATATTTAC--TTTTTTCGTATTTCATT
1 TATTATTTTTAATTACTTTATTTTAATATTA-T-TATTATATTTACTTTTTTTTTGTATTTCATT
* * * * *
68211044 ACTATTGTTAGCATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATAGGTATATATAT
64 ATTATTGCTAGTATTATTATTATTATTAATATTAGTATATG-TTTTATTATATAGGTATATATAT
68211109 ATATTTATATATAG
128 AT-TTTATATATAG
**
68211123 TATTATTTTTAATTACTTTATTTTAATATTATTATTATATTATGTTTATTTTTTTGTATTTCATT
1 TATTATTTTTAATTACTTTATTTTAATATTATTATTATATT-TACTT-TTTTTTTGTATTTCATT
* * *
68211188 ATTATTTCTAGTATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATGTATATATATA
64 ATTATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATATAGGTATATATATA
68211253 -TTTATATATAG
129 TTTTATATATAG
*
68211264 TATT-TTTTTAATTACTTTATTTTAATATTATTA-TATTATGTT--TATTTTTTTGTATTTCATT
1 TATTATTTTTAATTACTTTATTTTAATATTATTATTA-TAT-TTACTTTTTTTTTGTATTTCATT
* * * *
68211325 ATTATTTCTAGTATTATTATTCTTATTAATATTAGTATGTGTTTTATTATATATGTATATATATA
64 ATTATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATATAGGTATATATATA
68211390 -TTTATATATAG
129 TTTTATATATAG
*
68211401 TATTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTAC-TTTTATTTGTATTTCATT
1 TATTATTTTTAATTACTTTATTTTAATATTA-T-TATTATATTTACTTTTTTTTTGTATTTCATT
* * * * **
68211465 ACTATTGTTAGTATTATTATCATTATTAATATTAGTCTATGTTTTATTATATGTATATATAAATA
64 ATTATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATA--TAGGTAT--ATA
68211530 TATATATTTATATATAG
125 TATAT-TTTATATATAG
* *
68211547 TATCATTTTTAATTACTTTATTTTAATAGTATTATTATATT
1 TATTATTTTTAATTACTTTATTTTAATATTATTATTATATT
68211588 ATATGCCTTC
Statistics
Matches: 790, Mismatches: 59, Indels: 67
0.86 0.06 0.07
Matches are distributed among these distances:
132 18 0.02
133 39 0.05
134 4 0.01
135 23 0.03
136 5 0.01
137 143 0.18
138 28 0.04
139 13 0.02
140 145 0.18
141 156 0.20
142 42 0.05
143 25 0.03
144 108 0.14
145 1 0.00
146 40 0.05
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (140 bp):
TATTATTTTTAATTACTTTATTTTAATATTATTATTATATTTACTTTTTTTTTGTATTTCATTAT
TATTGCTAGTATTATTATTATTATTAATATTAGTATATGTTTTATTATATAGGTATATATATATT
TTATATATAG
Found at i:68211134 original size:282 final size:282
Alignment explanation
Indices: 68210523--68211591 Score: 1371
Period size: 281 Copynumber: 3.8 Consensus size: 282
68210513 CAGTTTCAAC
* *
68210523 GTTTTTATTATATACGTATATGTATTTATATTTACACT-TAGTATTATTTTTTTTAATTACTTTA
1 GTTTTTATTATATAGGTATA--TATATATATTTACA-TATAGTATTA---TTTTTAATTACTTTA
* ** ** * *
68210587 TTTTAATATTTTTATTATATTA-CATT-TGCTTTTTGTATTTCAATATTATTATTATTATTATTA
60 TTTTAATATTATTATTATATTATGTTTATTTTTTTTGTATTTCATTATTATTATTAGTATTATTA
* * * * * * *
68210650 TTATTATTAGT-GTATAT-TCTTATTATATACGTATATATATTTATATATA-ATACTA--TTTTT
125 TTATTAATATTAGTATATGTTTTATTATATATGTATATATATATATTTATATATAGTATTTTTTT
* *
68210710 AATTACTTTATTTTAACATTA-T-TATTATATTTACTTTTTTTTTGTATTTCATTATTATTGCTA
190 AATTACTTTATTTTAATATTATTATATTATATTTAC--TTTTTTTGTATTTCATTATTATTGTTA
* *
68210773 GTATTATTATTATTATTATTATTAGTGTAT
253 GTATTATTATCATTATTAATATTAGTGTAT
* *
68210803 GTTTTT-TTATATAGGTATATATATATTTTTACATATAGTATTGTTTTTAATTACTTTATTTTAA
1 GTTTTTATTATATAGGTATATATATATATTTACATATAGTATTATTTTTAATTACTTTATTTTAA
68210867 TATTATTATTATATTATGTTTATTTTTTTTGTATTTCATTATTATT-TCTAGTATTATTATTATT
66 TATTATTATTATATTATGTTTATTTTTTTTGTATTTCATTATTATTAT-TAGTATTATTATTATT
*
68210931 ATTATTAGTATATGTTTTATTATATATGTATATATATATATTTATATATAGTATTTTTTTAATTA
130 AATATTAGTATATGTTTTATTATATATGTATATATATATATTTATATATAGTATTTTTTTAATTA
* * *
68210996 CTTTATTTTAATATTATTATATTATATTTACTTTTTTCGTATTTCATTACTATTGTTAGCATTAT
195 CTTTATTTTAATATTATTATATTATATTTACTTTTTTTGTATTTCATTATTATTGTTAGTATTAT
68211061 TATCATTATTAATATTAGTGTAT
260 TATCATTATTAATATTAGTGTAT
*
68211084 GTTTTTATTATATAGGTATATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAA
1 GTTTTTATTATATAGGTATATATATATATTTACATATAGTATTATTTTTAATTACTTTATTTTAA
68211149 TATTATTATTATATTATGTTTA-TTTTTTTGTATTTCATTATTATT-TCTAGTATTATTATTCTT
66 TATTATTATTATATTATGTTTATTTTTTTTGTATTTCATTATTATTAT-TAGTATTATTA---TT
68211212 ATTAATATTAGTATATGTTTTATTATATATG--TATATATATATTTATATATAGTATTTTTTTAA
127 ATTAATATTAGTATATGTTTTATTATATATGTATATATATATATTTATATATAGTATTTTTTTAA
*
68211275 TTACTTTATTTTAATATTATTATATTATGTTTA-TTTTTTTGTATTTCATTATTATT-TCTAGTA
192 TTACTTTATTTTAATATTATTATATTATATTTACTTTTTTTGTATTTCATTATTATTGT-TAGTA
68211338 TTATTATTC-TTATTAATATTA--GTAT
256 TTATTA-TCATTATTAATATTAGTGTAT
* *
68211363 GTGTTTTATTATATA--TGTATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTT-
1 GT-TTTTATTATATAGGTATATATATATATTTACATATAGTATTATTTTTAATTACTTTATTTTA
* * * *
68211425 A-A-TATTATTATATTATATTTACTTTTATTTGTATTTCATTACTATTGTTAGTATTATTATCAT
65 ATATTATTATTATATTATGTTTA-TTTTTTTTGTATTTCATTATTATTATTAGTATTA-T-T-AT
* * *
68211488 TATTAATATTAGTCTATGTTTTATTATATGTATATATAAATATATATATTTATATATAGTATCAT
126 TATTAATATTAGTATATGTTTTATTATA--TATGTAT--ATATATATATTTATATATAGTAT-TT
68211553 TTTTAATTACTTTATTTTAATAGTATTATTATATTATAT
186 TTTTAATTACTTTATTTT-A-A-TATTATTATATTATAT
68211592 GCCTTCCTTT
Statistics
Matches: 715, Mismatches: 40, Indels: 61
0.88 0.05 0.07
Matches are distributed among these distances:
274 36 0.05
275 21 0.03
276 43 0.06
277 83 0.12
278 76 0.11
279 27 0.04
280 20 0.03
281 162 0.23
282 144 0.20
283 35 0.05
284 51 0.07
285 1 0.00
286 1 0.00
287 15 0.02
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.60
Consensus pattern (282 bp):
GTTTTTATTATATAGGTATATATATATATTTACATATAGTATTATTTTTAATTACTTTATTTTAA
TATTATTATTATATTATGTTTATTTTTTTTGTATTTCATTATTATTATTAGTATTATTATTATTA
ATATTAGTATATGTTTTATTATATATGTATATATATATATTTATATATAGTATTTTTTTAATTAC
TTTATTTTAATATTATTATATTATATTTACTTTTTTTGTATTTCATTATTATTGTTAGTATTATT
ATCATTATTAATATTAGTGTAT
Found at i:68211160 original size:6 final size:6
Alignment explanation
Indices: 68211140--68211498 Score: 53
Period size: 6 Copynumber: 59.5 Consensus size: 6
68211130 TTTAATTACT
* * * *
68211140 TTATT- TTAATA TTATTA TTA-TA TTATGT- TTATTT TTTTGTA TT-TCA
1 TTATTA TTATTA TTATTA TTATTA TTAT-TA TTATTA TTAT-TA TTATTA
* * * * *
68211186 TTATTA TT-TCTA GTATTA TTATTC TTATTA ATATTA GTA-TA TGTTTTA
1 TTATTA TTAT-TA TTATTA TTATTA TTATTA TTATTA TTATTA T-TATTA
* * *
68211234 TTATATA TGTATATA TATATT- TATATATA GTATT- TTTTTAA TTACT-
1 TTAT-TA T-TAT-TA T-TATTA T-TAT-TA TTATTA TTATT-A TTATTA
* * * *
68211280 TTATT- TTAATA TTATTA -TATTA TGT-TTA TTTTTT TGTATT- TCATTA
1 TTATTA TTATTA TTATTA TTATTA T-TATTA TTATTA T-TATTA TTATTA
* * * * *
68211326 TTATT- TCTAGTA TTATTA TTCTTA TTAATA TTAGTA TGTGTT- TTATTA
1 TTATTA T-TATTA TTATTA TTATTA TTATTA TTATTA T-TATTA TTATTA
* * *
68211374 TATATGTA TATATATA TT-TATA TATAGTA TTATTT TTAATTA CT-TTA
1 T-TAT-TA T-TAT-TA TTAT-TA T-TATTA TTATTA TT-ATTA TTATTA
* *
68211421 TT-TTA ATATTA TTA-TA TTA-TA TTTACTT- TTATT- TGTATT- TCATTA
1 TTATTA TTATTA TTATTA TTATTA -TTA-TTA TTATTA T-TATTA TTATTA
* * * * *
68211466 CTATTG TTAGTA TTATTA TCATTA TTAATA TTA
1 TTATTA TTATTA TTATTA TTATTA TTATTA TTA
68211499 GTCTATGTTT
Statistics
Matches: 260, Mismatches: 57, Indels: 73
0.67 0.15 0.19
Matches are distributed among these distances:
5 61 0.23
6 140 0.54
7 38 0.15
8 21 0.08
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (6 bp):
TTATTA
Found at i:68224140 original size:38 final size:37
Alignment explanation
Indices: 68224098--68224215 Score: 107
Period size: 38 Copynumber: 3.2 Consensus size: 37
68224088 ATGGATTAAT
68224098 TTCATAAACTATACCAATATGTATTATCCAGCATCAAG
1 TTCATAAACTATACCAATAT-TATTATCCAGCATCAAG
* ** ** * * *
68224136 TTCATACAATTATATGAA-A-TA-TAAACATGGATGAAT
1 TTCATA-AACTATACCAATATTATTATCCA-GCATCAAG
68224172 TTCATAAACTATACCAATATATATTATCCAGCATCAAG
1 TTCATAAACTATACCAATAT-TATTATCCAGCATCAAG
68224210 TTCATA
1 TTCATA
68224216 TAATTATATG
Statistics
Matches: 58, Mismatches: 16, Indels: 12
0.67 0.19 0.14
Matches are distributed among these distances:
35 12 0.21
36 14 0.24
38 20 0.34
39 12 0.21
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (37 bp):
TTCATAAACTATACCAATATTATTATCCAGCATCAAG
Found at i:68224194 original size:36 final size:36
Alignment explanation
Indices: 68224083--68224194 Score: 93
Period size: 36 Copynumber: 3.1 Consensus size: 36
68224073 GCATGAAATG
*
68224083 TAAACATGGATTAATTTCATAAACTATACCAATATGTA
1 TAAACATGGATCAATTTCATAAACTATACCAATA--TA
** * * * **
68224121 TTATCCA-GCATCAAGTTCATACAATTATATGAA-ATA
1 -TAAACATGGATCAATTTCATA-AACTATACCAATATA
*
68224157 TAAACATGGATGAATTTCATAAACTATACCAATATA
1 TAAACATGGATCAATTTCATAAACTATACCAATATA
68224193 TA
1 TA
68224195 TTATCCAGCA
Statistics
Matches: 54, Mismatches: 16, Indels: 9
0.68 0.20 0.11
Matches are distributed among these distances:
35 12 0.22
36 18 0.33
38 12 0.22
39 12 0.22
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (36 bp):
TAAACATGGATCAATTTCATAAACTATACCAATATA
Found at i:68224197 original size:74 final size:74
Alignment explanation
Indices: 68224075--68224227 Score: 270
Period size: 74 Copynumber: 2.1 Consensus size: 74
68224065 TTAACTTTGC
* * *
68224075 ATGAAATGTAAACATGGATTAATTTCATAAACTATACCAATATGTATTATCCAGCATCAAGTTCA
1 ATGAAATATAAACATGGATGAATTTCATAAACTATACCAATATATATTATCCAGCATCAAGTTCA
68224140 TACAATTAT
66 TACAATTAT
68224149 ATGAAATATAAACATGGATGAATTTCATAAACTATACCAATATATATTATCCAGCATCAAGTTCA
1 ATGAAATATAAACATGGATGAATTTCATAAACTATACCAATATATATTATCCAGCATCAAGTTCA
*
68224214 TATAATTAT
66 TACAATTAT
68224223 ATGAA
1 ATGAA
68224228 TTGTACTATC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (74 bp):
ATGAAATATAAACATGGATGAATTTCATAAACTATACCAATATATATTATCCAGCATCAAGTTCA
TACAATTAT
Found at i:68247209 original size:8 final size:8
Alignment explanation
Indices: 68247198--68247224 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
68247188 AAATATAATG
68247198 TAATAAAA
1 TAATAAAA
68247206 TAATAAAA
1 TAATAAAA
68247214 TAATAAAA
1 TAATAAAA
68247222 TAA
1 TAA
68247225 AATAGAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAATAAAA
Found at i:68248368 original size:9 final size:9
Alignment explanation
Indices: 68248354--68248535 Score: 65
Period size: 10 Copynumber: 19.6 Consensus size: 9
68248344 CTGCTTTTAT
68248354 TAAAAATTA
1 TAAAAATTA
68248363 TAAAAA--A
1 TAAAAATTA
*
68248370 TTAAAATCTA
1 TAAAAAT-TA
*
68248380 TAAAATTTA
1 TAAAAATTA
*
68248389 TAAATATTA
1 TAAAAATTA
**
68248398 TTAAATTTTAA
1 -TAAAAATT-A
68248409 TAAAAA--A
1 TAAAAATTA
**
68248416 TTCAAA-TA
1 TAAAAATTA
68248424 TTAAAAATTA
1 -TAAAAATTA
68248434 TAAAAATATA
1 TAAAAAT-TA
68248444 TAAAAATCGTA
1 TAAAAAT--TA
*
68248455 -AAAAATAA
1 TAAAAATTA
*
68248463 TAAAAGATTG
1 TAAAA-ATTA
**
68248473 TAAATTTTTA
1 TAAA-AATTA
68248483 TAAAAATAGTA
1 TAAAAAT--TA
*
68248494 AAAAAATTA
1 TAAAAATTA
68248503 T-AAAA-TA
1 TAAAAATTA
*
68248510 TATAGAATTA
1 TA-AAAATTA
68248520 TAAAAAAATTA
1 T--AAAAATTA
68248531 TAAAA
1 TAAAA
68248536 TTTTACAAGT
Statistics
Matches: 128, Mismatches: 25, Indels: 40
0.66 0.13 0.21
Matches are distributed among these distances:
7 14 0.11
8 6 0.05
9 40 0.31
10 49 0.38
11 18 0.14
12 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:68248445 original size:10 final size:10
Alignment explanation
Indices: 68248419--68248535 Score: 70
Period size: 10 Copynumber: 12.2 Consensus size: 10
68248409 TAAAAAATTC
68248419 AAATAT-TAA
1 AAATATATAA
68248428 AAAT-TATAA
1 AAATATATAA
68248437 AAATATATAA
1 AAATATATAA
*
68248447 AAATCGTA-AA
1 AAAT-ATATAA
68248457 AAATA-ATAA
1 AAATATATAA
*
68248466 AAGAT-TGTAA
1 AA-ATATATAA
** *
68248476 ATTTTTATAA
1 AAATATATAA
*
68248486 AAATAGTAAAA
1 AAATA-TATAA
68248497 AAAT-TAT-A
1 AAATATATAA
*
68248505 AAATATATAG
1 AAATATATAA
* *
68248515 AATTATAAAA
1 AAATATATAA
68248525 AAAT-TATAA
1 AAATATATAA
68248534 AA
1 AA
68248536 TTTTACAAGT
Statistics
Matches: 81, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
8 7 0.09
9 27 0.33
10 37 0.46
11 10 0.12
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (10 bp):
AAATATATAA
Found at i:68248479 original size:74 final size:71
Alignment explanation
Indices: 68248351--68248488 Score: 172
Period size: 74 Copynumber: 1.9 Consensus size: 71
68248341 CCTCTGCTTT
* * * *
68248351 TATTAAAAATTATAAAAAATTAAAATCTATAAAATTTATAAATATTATTAAATTTTAATAAAAAA
1 TATTAAAAATTATAAAAAATTAAAATCTAAAAAATATATAAAGATTAGTAAATTTTAATAAAAAA
68248416 TTCAAA
66 TTCAAA
*
68248422 TATTAAAAATTATAAAAATATATAAAAATCGTAAAAAATA-ATAAAAGATT-GTAAATTTTTATA
1 TATTAAAAATTATAAAAA-AT-T-AAAATC-TAAAAAATATAT-AAAGATTAGTAAATTTTAATA
68248485 AAAA
61 AAAA
68248489 TAGTAAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
71 18 0.32
72 2 0.04
73 1 0.02
74 23 0.40
75 13 0.23
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (71 bp):
TATTAAAAATTATAAAAAATTAAAATCTAAAAAATATATAAAGATTAGTAAATTTTAATAAAAAA
TTCAAA
Found at i:68248836 original size:26 final size:28
Alignment explanation
Indices: 68248801--68248854 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
68248791 AAATTCTAAT
*
68248801 TTTTAAT-AAATTTTA-AATTTTTTATA
1 TTTTAATAAAATTTAATAATTTTTTATA
*
68248827 TTTTATTAAAATTTAATAATTTTTTATA
1 TTTTAATAAAATTTAATAATTTTTTATA
68248855 AAATTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 6 0.25
27 7 0.29
28 11 0.46
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTAATAAAATTTAATAATTTTTTATA
Found at i:68248855 original size:10 final size:10
Alignment explanation
Indices: 68248797--68248894 Score: 55
Period size: 10 Copynumber: 10.3 Consensus size: 10
68248787 AGAAAAATTC
*
68248797 TAATTTTTAA
1 TAATTTTTTA
*
68248807 TAA-ATTTTA
1 TAATTTTTTA
68248816 -AATTTTTTA
1 TAATTTTTTA
68248825 T-ATTTTATTA
1 TAATTTT-TTA
* *
68248835 -AA-ATTTAA
1 TAATTTTTTA
68248843 TAATTTTTTA
1 TAATTTTTTA
**
68248853 TAA-AATTTA
1 TAATTTTTTA
*
68248862 TTATTTTTTA
1 TAATTTTTTA
* *
68248872 TATTTTTTTC
1 TAATTTTTTA
*
68248882 TAATTTTTAA
1 TAATTTTTTA
68248892 TAA
1 TAA
68248895 GAGTAGGAGC
Statistics
Matches: 63, Mismatches: 18, Indels: 14
0.66 0.19 0.15
Matches are distributed among these distances:
8 4 0.06
9 24 0.38
10 35 0.56
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:68248867 original size:19 final size:19
Alignment explanation
Indices: 68248815--68248873 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 19
68248805 AATAAATTTT
* *
68248815 AAATTTTTTATATTTTATTA
1 AAATTTATTATTTTTTA-TA
*
68248835 AAATTTAATAATTTTTTATA
1 AAATTT-ATTATTTTTTATA
68248855 AAATTTATTATTTTTTATA
1 AAATTTATTATTTTTTATA
68248874 TTTTTTTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 12 0.35
20 14 0.41
21 8 0.24
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
AAATTTATTATTTTTTATA
Found at i:68255195 original size:43 final size:42
Alignment explanation
Indices: 68255140--68255231 Score: 109
Period size: 43 Copynumber: 2.1 Consensus size: 42
68255130 GTAACATACA
68255140 ATGCCAACGTCCCAGAC-GTGGTCTTACAT-GTA-ATCACATATCG
1 ATGCC-ACGTCCCAGACAG-GGTCTTAC-TCGTACA-CACATATCG
*
68255183 ATGCCACTGTCCCAGACAGGGTCTTACTCGTACACATATATCG
1 ATGCCAC-GTCCCAGACAGGGTCTTACTCGTACACACATATCG
68255226 ATGCCA
1 ATGCCA
68255232 TGGTCTTACT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
42 3 0.07
43 39 0.89
44 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCACGTCCCAGACAGGGTCTTACTCGTACACACATATCG
Found at i:68256132 original size:17 final size:16
Alignment explanation
Indices: 68256102--68256148 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
68256092 CATGATAACT
*
68256102 TATTATATGTTTTATTA
1 TATTACATG-TTTATTA
68256119 TATTAGCATGTTTATTA
1 TATTA-CATGTTTATTA
*
68256136 TTTTACATGTTTA
1 TATTACATGTTTA
68256149 ACCTTTTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 8 0.30
17 16 0.59
18 3 0.11
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.60
Consensus pattern (16 bp):
TATTACATGTTTATTA
Found at i:68256743 original size:23 final size:22
Alignment explanation
Indices: 68256717--68256760 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
68256707 GTGATGAGGT
68256717 TATCTT-ATAAATATGCATGAATC
1 TATCTTGA-AAATATGC-TGAATC
68256740 TATCTTGAAAATATGCTGAAT
1 TATCTTGAAAATATGCTGAAT
68256761 TGGATTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (22 bp):
TATCTTGAAAATATGCTGAATC
Found at i:68261569 original size:18 final size:18
Alignment explanation
Indices: 68261546--68261598 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
68261536 GTGTGCTTCA
68261546 CCCGTGTGGCCCCACACG
1 CCCGTGTGGCCCCACACG
68261564 CCCGTGTGGCCCCACACG
1 CCCGTGTGGCCCCACACG
68261582 CCCGTGTGG-CCCACACG
1 CCCGTGTGGCCCCACACG
68261599 GCCTAATTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 8 0.23
18 27 0.77
ACGTcount: A:0.11, C:0.49, G:0.28, T:0.11
Consensus pattern (18 bp):
CCCGTGTGGCCCCACACG
Found at i:68262267 original size:29 final size:29
Alignment explanation
Indices: 68262235--68262292 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
68262225 GGGGAAATTT
68262235 GTAGGGAAAATTCGGCAGGGAGAGAGATA
1 GTAGGGAAAATTCGGCAGGGAGAGAGATA
68262264 GTAGGGAAAATTCGGCAGGGAGAGAGATA
1 GTAGGGAAAATTCGGCAGGGAGAGAGATA
68262293 AATGATTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.41, T:0.14
Consensus pattern (29 bp):
GTAGGGAAAATTCGGCAGGGAGAGAGATA
Found at i:68265806 original size:7 final size:7
Alignment explanation
Indices: 68265794--68265818 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
68265784 CTCACACAGT
68265794 GTTTAGG
1 GTTTAGG
68265801 GTTTAGG
1 GTTTAGG
68265808 GTTTAGG
1 GTTTAGG
68265815 GTTT
1 GTTT
68265819 TGCACAGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:68267726 original size:110 final size:110
Alignment explanation
Indices: 68267533--68267755 Score: 428
Period size: 110 Copynumber: 2.0 Consensus size: 110
68267523 AGTAAGGTTT
68267533 ACTACCTATAGTAGTTTTATAGCATGTTAACAGTAATTTCAGACAGTTCCAAACAGAATTTCAGT
1 ACTACCTATAGTAGTTTTATAGCATGTTAACAGTAATTTCAGACAGTTCCAAACAGAATTTCAGT
*
68267598 ATATTCTAATCATGCTTTCATATAATTCTAAATAGACTTTCAGAA
66 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAGAA
*
68267643 ACTACCTATAGTAGTTTTATAGCATGTTAACAGTAATTTTAGACAGTTCCAAACAGAATTTCAGT
1 ACTACCTATAGTAGTTTTATAGCATGTTAACAGTAATTTCAGACAGTTCCAAACAGAATTTCAGT
68267708 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAGAA
66 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAGAA
68267753 ACT
1 ACT
68267756 TACAAGATTG
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 111 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (110 bp):
ACTACCTATAGTAGTTTTATAGCATGTTAACAGTAATTTCAGACAGTTCCAAACAGAATTTCAGT
ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAGAA
Found at i:68268079 original size:20 final size:19
Alignment explanation
Indices: 68268054--68268100 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
68268044 GGAAGCTTTC
68268054 AAAACCAATTTAATTTACGA-
1 AAAACCAATTT-ATTT-CGAG
*
68268074 AAAACCTTATTTATTTCGAG
1 AAAACC-AATTTATTTCGAG
68268094 AAAACCA
1 AAAACCA
68268101 TTCTCTAGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 3 0.13
20 16 0.70
21 4 0.17
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (19 bp):
AAAACCAATTTATTTCGAG
Found at i:68278796 original size:46 final size:46
Alignment explanation
Indices: 68278745--68279319 Score: 638
Period size: 46 Copynumber: 13.4 Consensus size: 46
68278735 GAAACGCGGC
68278745 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
*
68278791 TGAAAGATACTATGGCAACCTGATATGAAATGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* *
68278837 TGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCACGGC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
68278875 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* * *
68278921 TGAAAGATATCATGGCAATCTGATATGAAATGTGTAAGACCATAGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
68278967 TGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
*
68279005 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* *
68279051 TGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCACGGC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
*
68279089 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* *
68279135 TGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCACGGC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
*
68279173 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* * **
68279219 TGAAAGATACC---G-----TGACATGAAAAGAATAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* * * * *
68279257 TGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCTTAGT
1 TGAAAGATACCATGGCAACCTGATATG-AAATGTGTAAGACCATGGT
* *
68279303 TGAAAGACACTATGGCA
1 TGAAAGATACCATGGCA
68279320 TCATGTCAAA
Statistics
Matches: 456, Mismatches: 32, Indels: 82
0.80 0.06 0.14
Matches are distributed among these distances:
38 169 0.37
41 9 0.02
43 9 0.02
45 1 0.00
46 268 0.59
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (46 bp):
TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
Found at i:68278974 original size:130 final size:130
Alignment explanation
Indices: 68278741--68279229 Score: 668
Period size: 130 Copynumber: 3.8 Consensus size: 130
68278731 TGAAGAAACG
*
68278741 CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGG
1 CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
68278806 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCA
66 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCA
*
68278871 CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGG
1 CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
* *
68278936 CAATCTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCA
66 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCA
* * *
68279001 TGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGAAAGATACCATGG
1 CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
* *
68279066 CAACC-----TG---TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTG
66 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---TGTG
68279123 TAAGACCA
123 TAAGACCA
* * * *
68279131 TGGATGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCACGGCTGAAAGATACCATGG
1 CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
*
68279188 CAACCTGATATGAAATGTGTAAGACCATGGATGAAAGATACC
66 CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
68279230 GTGACATGAA
Statistics
Matches: 326, Mismatches: 17, Indels: 32
0.87 0.05 0.09
Matches are distributed among these distances:
122 67 0.21
125 4 0.01
127 4 0.01
130 251 0.77
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (130 bp):
CGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
CAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCA
Found at i:68279309 original size:84 final size:84
Alignment explanation
Indices: 68278905--68279297 Score: 581
Period size: 84 Copynumber: 4.7 Consensus size: 84
68278895 TGATATGAAA
* * * *
68278905 TGTGTAAGACCATGGTTGAAAGATATCATGGCAATCTGATATGAAATGTGTAAGACCATAGTTGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
68278970 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTG
68278989 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
68279054 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTG
* *
68279073 TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
68279138 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTG
* *
68279157 TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
* * *****
68279222 AAGATACCGTGACATGAAA
66 AAGATACCATGGCAACCTG
* ** * * *
68279241 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACC
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGTGTAAGACC
68279298 TTAGTTGAAA
Statistics
Matches: 287, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
83 1 0.00
84 286 1.00
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (84 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGA
AAGATACCATGGCAACCTG
Found at i:68279309 original size:168 final size:167
Alignment explanation
Indices: 68278745--68279319 Score: 619
Period size: 168 Copynumber: 3.4 Consensus size: 167
68278735 GAAACGCGGC
* *
68278745 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 TGAAAGATACCATGGCAA-CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
* *
68278810 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---TGTGTAAG
65 C-----TG---TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
* * * **
68278867 ACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
122 ACCATGGATGAAAGATACCATGACAA-C----A--AAA-GAATAAGACCATGGT
*
68278921 TGAAAGATATCATGGCAATCTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAA-CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
* *
68278986 CTGTGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
65 CTGTGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
* **** ** * *
68279051 TGAAAGATACCATGGCAACCTGTGTGTAAGACCACGGC
130 TGAAAGATACCATGACAACAAAAGAATAAGACCATGGT
* *
68279089 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAA-CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
68279154 CTGTGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
65 CTGTGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGA
* **
68279219 TGAAAGATACCGTGACATGAAAAGAATAAGACCATGGT
130 TGAAAGATACCATGACAACAAAAGAATAAGACCATGGT
* * * * *
68279257 TGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCTTAGTTGAAAGACACTATGGCA
1 TGAAAGATACCATGGCAAC-TGATATG-AAATGTGTAAGACCATAGTTGAAAGATACCATGGCA
68279320 TCATGTCAAA
Statistics
Matches: 352, Mismatches: 37, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
167 2 0.01
168 251 0.71
171 2 0.01
173 2 0.01
175 1 0.00
176 94 0.27
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (167 bp):
TGAAAGATACCATGGCAACTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACC
TGTGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGAT
GAAAGATACCATGACAACAAAAGAATAAGACCATGGT
Found at i:68279318 original size:130 final size:130
Alignment explanation
Indices: 68278745--68279319 Score: 628
Period size: 130 Copynumber: 4.5 Consensus size: 130
68278735 GAAACGCGGC
68278745 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
* *** * *
68278810 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCACGGC
66 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAAATGTGTAAGACCATGGT
68278875 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATA-TCATGGCAA
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACT-ATGGCAA
* * * ***
68278939 TCTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGG
65 CCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAAATGTGTAAGACCATGG
68279004 T
130 T
* *
68279005 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGATGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
* * *
68279070 C-----TG---TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
66 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAT-G--A-C--A-A-CAAATGTGTAAG
*
68279127 ACCATGGA
123 ACCATGGT
* * *
68279135 TGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCACGGCTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
* * ** * **
68279192 CTGATATGAAATGTGTAAGACCATGGATGAAAGATACCGTGACATGAAAAGAATAAGACCATGGT
66 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAAATGTGTAAGACCATGGT
* * * * * *
68279257 TGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCTTAGTTGAAAGACACTATGGCA
1 TGAAAGATACCATGGCAACCTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACTATGGCA
68279320 TCATGTCAAA
Statistics
Matches: 384, Mismatches: 34, Indels: 54
0.81 0.07 0.11
Matches are distributed among these distances:
122 95 0.25
123 1 0.00
124 1 0.00
125 4 0.01
126 3 0.01
127 3 0.01
128 1 0.00
129 3 0.01
130 273 0.71
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (130 bp):
TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAAATGTGTAAGACCATGGT
Found at i:68287082 original size:94 final size:94
Alignment explanation
Indices: 68286921--68287107 Score: 365
Period size: 94 Copynumber: 2.0 Consensus size: 94
68286911 CTTCAAATTC
68286921 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
1 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
68286986 TGTATGTATTTTAACCTATATAAGCTTAA
66 TGTATGTATTTTAACCTATATAAGCTTAA
*
68287015 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGTATTTCTGGCCT
1 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
68287080 TGTATGTATTTTAACCTATATAAGCTTA
66 TGTATGTATTTTAACCTATATAAGCTTA
68287108 CTTTATTTTT
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (94 bp):
CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
TGTATGTATTTTAACCTATATAAGCTTAA
Found at i:68287416 original size:5 final size:6
Alignment explanation
Indices: 68287386--68287413 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
68287376 CATCAACTAC
68287386 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
68287414 GAACAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:68299052 original size:217 final size:217
Alignment explanation
Indices: 68298661--68299096 Score: 739
Period size: 217 Copynumber: 2.0 Consensus size: 217
68298651 TAGTTCCTAA
* *
68298661 AGAAGTTTATAGATATTAGAGATTAGCAAATTTTTTATTGATTTGGACACAACATTCTCTTGCTT
1 AGAAGTTTATAGATATTAGAGATTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGCTT
68298726 ATGATGAAAACCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
66 ATGATGAAAACCCCTTACGAGCT-----A-TTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
*
68298791 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGGGCAAA
125 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATA-GCCAAA
68298856 ATAAAGTAAAAATATTTCCTTGACATTAG
189 ATAAAGTAAAAATATTTCCTTGACATTAG
* *
68298885 AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
1 AGAAGTTTATAGATATTAGAGATTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGCTT
* *
68298950 ATGATGAAAATCCCTTACGAGCT-TTAACTGCTATCATCCATTTTGTTGAAGTACTTCATCAAAC
66 ATGATGAAAACCCCTTACGAGCTATTAACTGCCATCATCCATTTTGTTGAAGTACTTCATCAAAC
68299014 TTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAATAAAGT
131 TTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAATAAAGT
68299079 AAAAATATTTCCTTGACA
196 AAAAATATTTCCTTGACA
68299097 ATCAAACATA
Statistics
Matches: 205, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
216 30 0.15
217 92 0.45
224 83 0.40
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (217 bp):
AGAAGTTTATAGATATTAGAGATTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGCTT
ATGATGAAAACCCCTTACGAGCTATTAACTGCCATCATCCATTTTGTTGAAGTACTTCATCAAAC
TTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAATAAAGT
AAAAATATTTCCTTGACATTAG
Found at i:68304761 original size:18 final size:20
Alignment explanation
Indices: 68304721--68304765 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
68304711 TAATAATTAA
*
68304721 AAAAATTAAAAGTAATTTTT
1 AAAAATTAAAAGTAATTTAT
*
68304741 AAAATTTAAAA-T-ATTTAT
1 AAAAATTAAAAGTAATTTAT
68304759 AAAAATT
1 AAAAATT
68304766 CTAAATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 11 0.50
19 1 0.05
20 10 0.45
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
AAAAATTAAAAGTAATTTAT
Found at i:68313124 original size:44 final size:48
Alignment explanation
Indices: 68313020--68313110 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
68313010 ATTGTATCAA
*
68313020 TCTCACACACTAAGTGCATATATATATATATAGCAAAAGCTATCTCGT
1 TCTCACACACTAAGTGCATATATATATATATACCAAAAGCTATCTCGT
68313068 TCTCACACACTAAGTGCA-A-ATATATATAT-CCAAAA-CTATCTCG
1 TCTCACACACTAAGTGCATATATATATATATACCAAAAGCTATCTCG
68313111 ATTTCGTACA
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
44 8 0.19
45 5 0.12
46 10 0.24
47 1 0.02
48 18 0.43
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (48 bp):
TCTCACACACTAAGTGCATATATATATATATACCAAAAGCTATCTCGT
Found at i:68327604 original size:35 final size:35
Alignment explanation
Indices: 68327538--68327606 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
68327528 GCATATAAAT
* *
68327538 ATATATATAGCAGAAGCTATCTTGTTCTCGCACAA
1 ATATATATAGCAGAAACTATCTCGTTCTCGCACAA
* *
68327573 ATATATATATCCGAAACTATCTCGATT-TCGCACA
1 ATATATATAGCAGAAACTATCTCG-TTCTCGCACA
68327607 CTACGTGCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 27 0.93
36 2 0.07
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.32
Consensus pattern (35 bp):
ATATATATAGCAGAAACTATCTCGTTCTCGCACAA
Found at i:68329054 original size:25 final size:25
Alignment explanation
Indices: 68329016--68329132 Score: 126
Period size: 25 Copynumber: 4.7 Consensus size: 25
68329006 TTTGACCCAT
** *
68329016 AGCTCGTGAAAGCATATCGATCTAC
1 AGCTCGTGTGAGCATATCGATTTAC
* *
68329041 AGCTCGTGTGAGCATATTGATTTAT
1 AGCTCGTGTGAGCATATCGATTTAC
* *
68329066 AGCTCGTGAGAGCATATCGATTTAT
1 AGCTCGTGTGAGCATATCGATTTAC
* * *
68329091 AGCTCGAGTGAGCATACCGATTCAC
1 AGCTCGTGTGAGCATATCGATTTAC
* *
68329116 AGCTCGTATAAGCATAT
1 AGCTCGTGTGAGCATAT
68329133 ATGTACATGA
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCTCGTGTGAGCATATCGATTTAC
Found at i:68329120 original size:50 final size:50
Alignment explanation
Indices: 68329016--68329132 Score: 146
Period size: 50 Copynumber: 2.3 Consensus size: 50
68329006 TTTGACCCAT
* ** * *
68329016 AGCTCGTGAAAGCATATCGATCTACAGCTCGTGTGAGCATATTGATTTAT
1 AGCTCGTGAAAGCATATCGATCTACAGCTCGAGTGAGCATACCGATTCAC
* * *
68329066 AGCTCGTGAGAGCATATCGATTTATAGCTCGAGTGAGCATACCGATTCAC
1 AGCTCGTGAAAGCATATCGATCTACAGCTCGAGTGAGCATACCGATTCAC
68329116 AGCTCGT-ATAAGCATAT
1 AGCTCGTGA-AAGCATAT
68329133 ATGTACATGA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.02
50 56 0.98
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (50 bp):
AGCTCGTGAAAGCATATCGATCTACAGCTCGAGTGAGCATACCGATTCAC
Found at i:68333872 original size:27 final size:27
Alignment explanation
Indices: 68333842--68334046 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
68333832 ATATTGAGTC
* * *
68333842 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
68333869 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
68333896 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
68333923 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
68333951 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* * **
68333978 CGCACACTTAGTGC-ATCGTATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
68334005 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
68334032 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68334047 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 131 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:68334614 original size:13 final size:13
Alignment explanation
Indices: 68334596--68334620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68334586 TACTAAATTT
68334596 TCATGGATTCAAG
1 TCATGGATTCAAG
68334609 TCATGGATTCAA
1 TCATGGATTCAA
68334621 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:68342755 original size:8 final size:8
Alignment explanation
Indices: 68342742--68342787 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
68342732 ACTTAAGTAT
68342742 ATAATATA
1 ATAATATA
68342750 ATAATATA
1 ATAATATA
68342758 AT-ATAT-
1 ATAATATA
*
68342764 A-AATTTA
1 ATAATATA
*
68342771 ATAATTTA
1 ATAATATA
68342779 ATAATATA
1 ATAATATA
68342787 A
1 A
68342788 CAAAACATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 4 0.12
7 5 0.15
8 24 0.73
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:68343712 original size:44 final size:44
Alignment explanation
Indices: 68343657--68343741 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
68343647 TGTACAGGGA
*
68343657 TACTTCGACTTCAAGTCGATGAGGCAC-TAATAGTGTCGTACTGT
1 TACTTCAACTTCAAGTCGATGAGGCACTTAAT-GTGTCGTACTGT
** *
68343701 TACTTCAACTTCGTGTCGATGAGGCACTTCATGTGTCGTAC
1 TACTTCAACTTCAAGTCGATGAGGCACTTAATGTGTCGTAC
68343742 AGTTTCTGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 33 0.92
45 3 0.08
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (44 bp):
TACTTCAACTTCAAGTCGATGAGGCACTTAATGTGTCGTACTGT
Found at i:68352034 original size:22 final size:19
Alignment explanation
Indices: 68352006--68352049 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 19
68351996 CGCTACTTCA
68352006 TATAATATATAATTATATCTAT
1 TATAATATAT-ATTA-AT-TAT
68352028 TATAATATATATTAATTAT
1 TATAATATATATTAATTAT
68352047 TAT
1 TAT
68352050 CAACTTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 2 0.09
21 4 0.18
22 10 0.45
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TATAATATATATTAATTAT
Found at i:68355013 original size:2 final size:2
Alignment explanation
Indices: 68355006--68355061 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
68354996 ATACTCCCTA
* *
68355006 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CC CT CT TT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
68355048 CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT
68355062 ATCAGCTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:68361084 original size:47 final size:47
Alignment explanation
Indices: 68361015--68361108 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
68361005 TTGATTCAAG
68361015 ATTTTTATGCTACCTACATTAGTGGAGAGAAATTGCTATGTTTAACA
1 ATTTTTATGCTACCTACATTAGTGGAGAGAAATTGCTATGTTTAACA
68361062 ATTTTTATGCTACCTACATTAGTGGAGAGAAATTGCTATGTTTAACA
1 ATTTTTATGCTACCTACATTAGTGGAGAGAAATTGCTATGTTTAACA
68361109 TATGAAGCCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (47 bp):
ATTTTTATGCTACCTACATTAGTGGAGAGAAATTGCTATGTTTAACA
Found at i:68361522 original size:18 final size:18
Alignment explanation
Indices: 68361496--68361533 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
68361486 ATTTTGATAA
68361496 AATTCTTATAAAAAAATT
1 AATTCTTATAAAAAAATT
* *
68361514 AATTTTTATAAAATAATT
1 AATTCTTATAAAAAAATT
68361532 AA
1 AA
68361534 AATTACACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTCTTATAAAAAAATT
Found at i:68364755 original size:12 final size:12
Alignment explanation
Indices: 68364738--68364767 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68364728 CTTCAGTTTT
68364738 CACACGGCCTAG
1 CACACGGCCTAG
*
68364750 CACACGGCCTGG
1 CACACGGCCTAG
68364762 CACACG
1 CACACG
68364768 AACGTGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.43, G:0.27, T:0.07
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:68368891 original size:14 final size:13
Alignment explanation
Indices: 68368875--68368919 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
68368865 ATTCTAAATT
68368875 AATAAAATAAAAA
1 AATAAAATAAAAA
68368888 TAATAAAATAATAAA
1 -AATAAAATAA-AAA
*
68368903 ACT-AAATAAAAA
1 AATAAAATAAAAA
68368915 AATAA
1 AATAA
68368920 TATCTTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 5 0.19
13 7 0.26
14 12 0.44
15 3 0.11
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAAATAAAAA
Found at i:68368895 original size:8 final size:8
Alignment explanation
Indices: 68368869--68368919 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
68368859 TAGCCTATTC
*
68368869 TAAATTAA
1 TAAAATAA
68368877 TAAAAT-A
1 TAAAATAA
68368884 -AAAATAA
1 TAAAATAA
68368891 TAAAATAA
1 TAAAATAA
68368899 TAAAACTAAA
1 TAAAA-T-AA
*
68368909 TAAAAAAA
1 TAAAATAA
68368917 TAA
1 TAA
68368920 TATCTTCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
6 5 0.14
7 2 0.05
8 22 0.59
9 1 0.03
10 7 0.19
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (8 bp):
TAAAATAA
Found at i:68368912 original size:18 final size:17
Alignment explanation
Indices: 68368878--68368919 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
68368868 CTAAATTAAT
68368878 AAAATAAAAATAATAAA
1 AAAATAAAAATAATAAA
* *
68368895 ATAATAAAACTAAATAAA
1 AAAATAAAAAT-AATAAA
68368913 AAAATAA
1 AAAATAA
68368920 TATCTTCTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAATAAAAATAATAAA
Found at i:68371793 original size:20 final size:20
Alignment explanation
Indices: 68371757--68371798 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
68371747 TTTATACTTC
* *
68371757 AGAAATTTATCAGAAGTTTT
1 AGAAATTTATCAAAAGTCTT
68371777 AGAAATCTT-TCAAAAGTCTT
1 AGAAAT-TTATCAAAAGTCTT
68371797 AG
1 AG
68371799 TTTCTAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (20 bp):
AGAAATTTATCAAAAGTCTT
Found at i:68375727 original size:35 final size:35
Alignment explanation
Indices: 68375678--68375747 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
68375668 TTTATAGATA
*
68375678 GAATTTACTCTCCCATTGAAAGTAAATAAATTGTT
1 GAATTTACTCTCCCATTGAAAGCAAATAAATTGTT
*
68375713 GAATTTACTTTCCCATTGAAAGCAAATAAATTGTT
1 GAATTTACTCTCCCATTGAAAGCAAATAAATTGTT
68375748 TTTATTCCGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (35 bp):
GAATTTACTCTCCCATTGAAAGCAAATAAATTGTT
Found at i:68377788 original size:9 final size:11
Alignment explanation
Indices: 68377761--68377787 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
68377751 CTTAGCAAAA
68377761 AATATATTAAT
1 AATATATTAAT
68377772 AATATATTAAT
1 AATATATTAAT
68377783 AATAT
1 AATAT
68377788 TTTTTACCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATATATTAAT
Found at i:68387513 original size:36 final size:36
Alignment explanation
Indices: 68387443--68387519 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 36
68387433 TAGGCAAAGG
* * * *
68387443 AGATAAGAACAGACAAATATAATTATAGTACAAACT
1 AGATAAGAACAAACAAACACAATTACAGTACAAACT
* *
68387479 AGATAAGAACAAACAAACACAGTTACAGTGCAAACT
1 AGATAAGAACAAACAAACACAATTACAGTACAAACT
68387515 A-ATAA
1 AGATAA
68387520 TGCACTAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
35 4 0.11
36 31 0.89
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.18
Consensus pattern (36 bp):
AGATAAGAACAAACAAACACAATTACAGTACAAACT
Found at i:68390379 original size:21 final size:21
Alignment explanation
Indices: 68390336--68390379 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68390326 CAAGAAACTA
* *
68390336 GATTCTAAAGTCTCCAATTTG
1 GATTCAAAAGTCTCCAATGTG
68390357 GATTCAAAAGTCT-CAATGGTG
1 GATTCAAAAGTCTCCAAT-GTG
68390378 GA
1 GA
68390380 AGCTAAGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (21 bp):
GATTCAAAAGTCTCCAATGTG
Found at i:68391362 original size:14 final size:15
Alignment explanation
Indices: 68391343--68391373 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
68391333 ATACAATAGC
68391343 AAAAAAGAAAA-GAA
1 AAAAAAGAAAAGGAA
68391357 AAAAAAGAAAAGGAA
1 AAAAAAGAAAAGGAA
68391372 AA
1 AA
68391374 TAGATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAGGAA
Found at i:68392667 original size:204 final size:197
Alignment explanation
Indices: 68392272--68392669 Score: 487
Period size: 204 Copynumber: 2.0 Consensus size: 197
68392262 TTTTAATTCA
* * *
68392272 ATTTTAATTGAGTTTTCCATTTGTATAACTTACTATTGTAAAATTCATTTAATATTTTTATATAT
1 ATTTTAATTGAGTTTTCCATTTGTATAACTTACTATTGTAAAATTCACTTAATATTTTTAAACAT
**** *
68392337 GTGTTGATATATTTTAATAATTTTACTTTGTTTTTATTTGTATAATTATTTTGAAGTTTTTTTTA
66 GTGTTGATATATTTTAATAATTTTACTTTGTTTTTATCAAAATAATTATTTTAAAGTTTTTTTTA
* * * *
68392402 TCATATTATTTTAACATTTTGTATAATATCTCATTTAAATATTTTTATGTATATTTGTACATATA
131 TCATATTATTTTAACACTTTATATAATATCTCATTCAAATATTTTTATATATATTTGTACATATA
68392467 TT
196 TT
* * * *
68392469 ATTTTAATTGATTTTTCTATTTGTA-ATACTTATTATTTTAAAATTCACTTAATATTTTTTTAAA
1 ATTTTAATTGAGTTTTCCATTTGTATA-ACTTACTATTGTAAAATTCACTTAATA--TTTTT--A
*
68392533 AACATGTGTTGAGCTAT-TTTTAATAATTTTACTTTGTTTTTA-CAAAATTATTATTTTAAAGTT
61 AACATGTGTTGA--TATATTTTAATAATTTTACTTTGTTTTTATCAAAATAATTATTTTAAAG-T
* * * * *
68392596 CTTTTTTGTATCATATTATTTTAACACTTTATCTGATATTTCGTTCAAATGTTTTTATATATATT
123 -TTTTTT-TATCATATTATTTTAACACTTTATATAATATCTCATTCAAATATTTTTATATATATT
68392661 TGTACATAT
186 TGTACATAT
68392670 CTAATCCATA
Statistics
Matches: 169, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
196 1 0.01
197 47 0.28
199 5 0.03
201 24 0.14
202 26 0.15
203 9 0.05
204 57 0.34
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (197 bp):
ATTTTAATTGAGTTTTCCATTTGTATAACTTACTATTGTAAAATTCACTTAATATTTTTAAACAT
GTGTTGATATATTTTAATAATTTTACTTTGTTTTTATCAAAATAATTATTTTAAAGTTTTTTTTA
TCATATTATTTTAACACTTTATATAATATCTCATTCAAATATTTTTATATATATTTGTACATATA
TT
Found at i:68396765 original size:19 final size:19
Alignment explanation
Indices: 68396741--68396787 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
68396731 TGATGCCTCC
*
68396741 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
68396760 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
68396779 TATGCATTA
1 TTTGCATTA
68396788 AAGACCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:68405647 original size:177 final size:177
Alignment explanation
Indices: 68405330--68406204 Score: 1121
Period size: 177 Copynumber: 5.0 Consensus size: 177
68405320 CCTGAAGTAC
* * *
68405330 TAGTGCAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTCAGCC
1 TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGCC
* ** * *
68405395 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTGATG
66 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGG
* *
68405460 TAGCAAGGAAGTAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAG
131 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * **
68405507 TAGTGGAGAAGATCGAAAGA-GGCGAATCTTATCTCCCTGTATCGGCAATGGAGCAGATTGAAGC
1 TAGTGGAGCAGATCG-AAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGC
* *
68405571 CACTAGCCTTATTTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAG
65 CACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAG
*
68405636 GTAGTAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
130 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * * ** ** *
68405684 T-TTGGAGTATATCGAAGATGGAAAATCTTATCTCCATGTATCGTTAATGGAGCAAATTTCAGCC
1 TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGCC
* * * * * * * * *** * *
68405748 CCAAGCCTTATCTCCCTGAAGTTG-TAGTGGAGCAGGTTCAAGATACAAGTCTTATATTTCTGAG
66 ACTAGCCTTATCTCTCTGAGGTAGCAAG-AGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAG
*
68405812 GTAGCAAGGAAGCATACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
130 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * * *
68405860 TTGTGGAGCAGATCGAAGATGGCTAATCTTATCTCCATGTATCGGCAATGGAGTAGATTTTAGCC
1 TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGCC
* *
68405925 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGAATGGAA-ATTGTAGTCTTATCTTCCTGAG
66 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG-GTTGAAGATTGTAGTCTTATCTTCCTGAG
* * * * *
68405989 GTAGCAAGGCAGTAGACTAAAGATTGAGGATCTTATCTCCATAAGCAG
130 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * * * *
68406037 TTGTGGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATC-GCAAAGGAGCAGATTTTAGCC
1 TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGCC
* * * **
68406101 ACTAGCCTTATCTCTCTGAGATAGCAAGAGAGTAGATTGGCGATTGTAGTCTTATCTTCCTGAGG
66 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGG
* * *
68406166 TAGCAAGGAAGCAGGCTGATGATTGTAGATCTTATCTCC
131 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCC
68406205 TTGAGAAAAC
Statistics
Matches: 600, Mismatches: 91, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
175 9 0.01
176 248 0.41
177 334 0.56
178 9 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (177 bp):
TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGCC
ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGG
TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
Found at i:68405650 original size:44 final size:46
Alignment explanation
Indices: 68405578--68405673 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 46
68405568 AGCCACTAGC
** *
68405578 CTTAT-TTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATGGTAG-T
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATGGAAGAT
* *
68405622 CTTATCTTC-CTGAGGTAGTAAG-GAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAGACTGAAGATGGAAGAT
68405667 CTTATCT
1 CTTATCT
68405674 CCCTAAGCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 32 0.73
45 11 0.25
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATGGAAGAT
Found at i:68405935 original size:88 final size:86
Alignment explanation
Indices: 68405843--68406114 Score: 200
Period size: 88 Copynumber: 3.1 Consensus size: 86
68405833 GATTGAAGAT
68405843 CTTATCTCCCTAAGCAGTTGTGGAGCAGATCGAAGATGGCTAATCTTATCTCCATGTATCGGCAA
1 CTTATCTCCCTAAGCAGTTGTGGAGCAGATCGAAGATGGCTAATCTTATCTCCATGTATC-GCAA
68405908 TGGAGTAGATTTTAGCCACTAGC
65 -GGAGTAGATTTTAGCCACTAGC
* * * * * * *
68405931 CTTATCTCTCTGAG--GTAGCAAGAGAGCAGAATGGAA-ATTG-TAGTCTTATCTTCC-TG-AGG
1 CTTATCTCCCTAAGCAGTTG--TG-GAGCAG-ATCGAAGATGGCTAATCTTATC-TCCATGTA--
* * ** * *
68405990 TAGCAAGGCAGTAGACTAAAG--ATTGAGGAT
59 TCGCAAGG-AGTAGATTTTAGCCACT-A-G-C
* * * *
68406020 CTTATCTCCATAAGCAGTTGTGGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCGCAAA
1 CTTATCTCCCTAAGCAGTTGTGGAGCAGATCGAAGATGGCTAATCTTATCTCCATGTATCGC-AA
*
68406085 GGAGCAGATTTTAGCCACTAGC
65 GGAGTAGATTTTAGCCACTAGC
68406107 CTTATCTC
1 CTTATCTC
68406115 TCTGAGATAG
Statistics
Matches: 134, Mismatches: 30, Indels: 41
0.65 0.15 0.20
Matches are distributed among these distances:
86 5 0.04
87 17 0.13
88 61 0.46
89 40 0.30
90 8 0.06
91 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (86 bp):
CTTATCTCCCTAAGCAGTTGTGGAGCAGATCGAAGATGGCTAATCTTATCTCCATGTATCGCAAG
GAGTAGATTTTAGCCACTAGC
Found at i:68405987 original size:353 final size:352
Alignment explanation
Indices: 68405336--68406204 Score: 1091
Period size: 353 Copynumber: 2.5 Consensus size: 352
68405326 GTACTAGTGC
*
68405336 AGTAGATCGAAGATGGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTCAGCCACCAGC
1 AGTAGATCGAAGATGGCGAATCTTATCTCCATGTA-TCGCAATGGAGCAGATTTCAGCC-CCAGC
* *** *** * *
68405401 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTGATGTAGCAA
64 CTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTCAAGATACAAGTCTTATATTTCTGAGGTAGCAA
*
68405466 GGAAGTAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAGAGGCG
129 GGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAGAGGCG
* *
68405531 AATCTTATCTCCCTGTATCGGCAATGGAGCAGATTGAAGCCACTAGCCTTATTTCTCTGAGGTAG
194 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTGAAGCCACTAGCCTTATCTCTCTGAGGTAG
* * * *
68405596 CAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGATT
259 CAAGAGAGCAGATGGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATT
*
68405661 GAAGATCTTATCTCCCTAAGCAGTT-TGG
324 GAAGATCTTATCTCCATAAGCAGTTGTGG
* ** * *
68405689 AGTATATCGAAGATGGAAAATCTTATCTCCATGTATCGTTAATGGAGCAAATTTCAGCCCCAAGC
1 AGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCG-CAATGGAGCAGATTTCAGCCCC-AGC
* * * *
68405754 CTTATCTCCCTGAAGTTG-TAGTGGAGCAGGTTCAAGATACAAGTCTTATATTTCTGAGGTAGCA
64 CTTATCTCTCTGAAGTAGCAAG-AGAGCAGGTTCAAGATACAAGTCTTATATTTCTGAGGTAGCA
* * * *
68405818 AGGAAGCATACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTTGTGGAGCAGATCG-AAGATGG
128 AGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAGA-GG
* * **
68405882 CTAATCTTATCTCCATGTATCGGCAATGGAGTAGATTTTAGCCACTAGCCTTATCTCTCTGAGGT
192 CGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTGAAGCCACTAGCCTTATCTCTCTGAGGT
* * *
68405947 AGCAAGAGAGCAGAATGGAA-ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGCAGTAGACTAAAG
257 AGCAAGAGAGCAG-ATGGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAG
*
68406011 ATTGAGGATCTTATCTCCATAAGCAGTTGTGG
321 ATTGAAGATCTTATCTCCATAAGCAGTTGTGG
* * * * * *
68406043 AGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCGCAAAGGAGCAGATTTTAGCCACTAGCC
1 AGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGCAATGGAGCAGATTTCAGCC-CCAGCC
* * *** *** * *
68406108 TTATCTCTCTG-AGATAGCAAGAGAGTAGATTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAA
65 TTATCTCTCTGAAG-TAGCAAGAGAGCAGGTTCAAGATACAAGTCTTATATTTCTGAGGTAGCAA
* * * *
68406172 GGAAGCAGGCTGATGATTGTAGATCTTATCTCC
129 GGAAGCAGACTAAAGATTGAAGATCTTATCTCC
68406205 TTGAGAAAAC
Statistics
Matches: 439, Mismatches: 68, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
352 12 0.03
353 385 0.88
354 42 0.10
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (352 bp):
AGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGCAATGGAGCAGATTTCAGCCCCAGCCT
TATCTCTCTGAAGTAGCAAGAGAGCAGGTTCAAGATACAAGTCTTATATTTCTGAGGTAGCAAGG
AAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAGAGGCGAA
TCTTATCTCCATGTATCGGCAATGGAGCAGATTGAAGCCACTAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGATGGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGA
AGATCTTATCTCCATAAGCAGTTGTGG
Found at i:68413033 original size:38 final size:38
Alignment explanation
Indices: 68412990--68413066 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
68412980 GTTATTTTAC
*
68412990 ATAATTTTTTAAATTGGTAAACCGACTAAGAGGGCATA
1 ATAATTTTTTAAATTGGTAAACCGACTAAGAGGACATA
*
68413028 ATAATTTTTTAAATTGGTAAACTGACTAAGAGGACATA
1 ATAATTTTTTAAATTGGTAAACCGACTAAGAGGACATA
68413066 A
1 A
68413067 AATGAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (38 bp):
ATAATTTTTTAAATTGGTAAACCGACTAAGAGGACATA
Found at i:68413982 original size:32 final size:34
Alignment explanation
Indices: 68413946--68414008 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
68413936 ACAGTGGTAC
*
68413946 TGGGCCAGAG-CCCTT-TTCAGATTACAATAAAT
1 TGGGCCAGAGCCCCTTATTCAGATAACAATAAAT
**
68413978 TGGGCCTTAGCCCCTTATTCAGATAACAATA
1 TGGGCCAGAGCCCCTTATTCAGATAACAATA
68414009 TGGCCCATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 8 0.31
33 5 0.19
34 13 0.50
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (34 bp):
TGGGCCAGAGCCCCTTATTCAGATAACAATAAAT
Found at i:68415883 original size:26 final size:26
Alignment explanation
Indices: 68415853--68415960 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
68415843 TGAAATTCCC
68415853 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68415879 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68415905 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68415931 ATCATGGAACACTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68415957 ATCA
1 ATCA
68415961 ATTTTTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68419542 original size:31 final size:31
Alignment explanation
Indices: 68419485--68419586 Score: 159
Period size: 31 Copynumber: 3.3 Consensus size: 31
68419475 CTTAATAACC
* *
68419485 TAGTGACTTAAATAAAAAGCTTTTGAATAGTT
1 TAGTGACTTAAATGAGAA-CTTTTGAATAGTT
68419517 TAGTGACTTAAATGAGAACTTTTGAATAGTT
1 TAGTGACTTAAATGAGAACTTTTGAATAGTT
* *
68419548 CAGTGACTTAAATGCGAACTTTTGAATAGTT
1 TAGTGACTTAAATGAGAACTTTTGAATAGTT
68419579 TAGTGACT
1 TAGTGACT
68419587 ATTTTGTAAC
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 49 0.75
32 16 0.25
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (31 bp):
TAGTGACTTAAATGAGAACTTTTGAATAGTT
Found at i:68420649 original size:28 final size:28
Alignment explanation
Indices: 68420610--68420667 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
68420600 AAAAATAAAG
68420610 TATATAGATTAAATATCAAGTTTTAGAA
1 TATATAGATTAAATATCAAGTTTTAGAA
68420638 TATATAGATTAAATATCAAGTTTTAGAA
1 TATATAGATTAAATATCAAGTTTTAGAA
68420666 TA
1 TA
68420668 GTCTAGAGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (28 bp):
TATATAGATTAAATATCAAGTTTTAGAA
Found at i:68424233 original size:22 final size:22
Alignment explanation
Indices: 68424185--68424233 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
68424175 CATTCAAGAT
68424185 AAAATAATATATAAAAATCTTTAA
1 AAAATAATATATAAAAA--TTTAA
*
68424209 AAAATAATATATAAACAATTCAA
1 AAAATAATATATAAA-AATTTAA
68424232 AA
1 AA
68424234 TATATAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 15 0.65
25 2 0.09
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATAATATATAAAAATTTAA
Found at i:68424468 original size:15 final size:15
Alignment explanation
Indices: 68424444--68424492 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
68424434 ATATAAATAG
*
68424444 AAATAAAAATATAAT
1 AAATAGAAATATAAT
68424459 AAATAGAAATATAAT
1 AAATAGAAATATAAT
68424474 AATAGTAGAAATATGAAT
1 AA-A-TAGAAATAT-AAT
68424492 A
1 A
68424493 GATAAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 16 0.53
16 1 0.03
17 9 0.30
18 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:68424477 original size:23 final size:23
Alignment explanation
Indices: 68424411--68424477 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
68424401 TATAAGAAAA
*
68424411 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
68424431 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
68424454 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
68424477 A
1 A
68424478 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:68425082 original size:5 final size:5
Alignment explanation
Indices: 68425074--68425100 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
68425064 ATAATTTAAT
68425074 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
68425101 ACAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:68425991 original size:263 final size:264
Alignment explanation
Indices: 68425529--68426068 Score: 805
Period size: 263 Copynumber: 2.0 Consensus size: 264
68425519 CTCAAGGAGA
* * *
68425529 TAAGGCTCACTGTCTTCGATCTGCTCCAATACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCC
1 TAAGGCTCACCGTCTTCGATCTACTCCAATACTGCTTAGGGAGATAAGATCTGCAATTTCCAGCC
* * * * * *
68425594 TGTTACCCTACTGTTTAAGGGGTCAAGGCTCACCGTTTTTGATTTGCTCCACTATTGCTTAGAGA
66 TGTTACCCTACTGCTTAAGGGGTAAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTTAGAGA
* ** **
68425659 GATAAGATCTGTAATTTTCAGCCTGTTATGCTACTGCTTAGGGGGTTGGGGCTCACCGTCTTCGA
131 GATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGA
* * *
68425724 TCTGCTCCACTACTGCTTAGTGAGATAAGATTTGTAATTTTTAGCCTGTTACCCGACTGCTTAGG
196 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCGACTGCTTAGG
68425789 GGGT
261 GGGT
* **
68425793 TAAGGCTCACCGTCTTTGATCTACTCCTCTACTGCTTAGGGAGATAAGATCTGCAATTTCCAGCC
1 TAAGGCTCACCGTCTTCGATCTACTCCAATACTGCTTAGGGAGATAAGATCTGCAATTTCCAGCC
* * *
68425858 TGTTACCC-ACTGCTTAGGGGGTAAAGGCTCACTGTCTTCGATCTGCTCCGCTACTGCTTA-AGG
66 TGTTACCCTACTGCTTAAGGGGTAAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTTAGA-G
* *
68425921 TGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCG
130 AGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCG
* *
68425986 ATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
195 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCGACTGCTTAG
68426051 GGGGT
260 GGGGT
*
68426056 TAAAGCTCACCGT
1 TAAGGCTCACCGT
68426069 GTTTTAGCTT
Statistics
Matches: 247, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
262 1 0.00
263 179 0.72
264 67 0.27
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (264 bp):
TAAGGCTCACCGTCTTCGATCTACTCCAATACTGCTTAGGGAGATAAGATCTGCAATTTCCAGCC
TGTTACCCTACTGCTTAAGGGGTAAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTTAGAGA
GATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGA
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCGACTGCTTAGG
GGGT
Found at i:68426000 original size:44 final size:43
Alignment explanation
Indices: 68425944--68426141 Score: 154
Period size: 44 Copynumber: 4.5 Consensus size: 43
68425934 AATTTCCAGC
68425944 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGAT
1 CTGTTA-CCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGAT
* * * * * * *
68425988 CTGCTCTA-CTACTGCTTAGGGAGATAA-GAT--CTGTAATTTCTAGC
1 CTG-T-TACCTACTGCTTAGGGGGTTAAGGCTCACCGT--GTTCGA-T
* ** *
68426032 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTTTTAG
1 CTGTTA-CCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGAT
*
68426076 CTTGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGAT
1 C-TGTTA-CCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGAT
68426121 CTGCTT-CACTACTGCTTAGGG
1 CTG-TTAC-CTACTGCTTAGGG
68426142 AGATAAGATT
Statistics
Matches: 121, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
41 3 0.02
42 2 0.02
43 8 0.07
44 55 0.45
45 48 0.40
46 2 0.02
47 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (43 bp):
CTGTTACCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGAT
Found at i:68426071 original size:88 final size:88
Alignment explanation
Indices: 68425459--68426068 Score: 776
Period size: 88 Copynumber: 6.9 Consensus size: 88
68425449 TTTCATATCA
* * * * * * ** *
68425459 ATCTACTCCATTACTGCTTAGGGAGATATGATTTGTAATCTT-CAGCTTGCT-CCACTGTTGCTC
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCCAGCCTGTTACC-CTACTGCTT
* * * *
68425522 AAGGAGATAAGGCTCACTGTCTTCG
64 AGGGGGTTAAGGCTCACCGTCTTCG
* * *
68425547 ATCTGCTCCAATACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGTTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
* * *
68425612 GGGGTCAAGGCTCACCGTTTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * * **
68425635 ATTTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTATGCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
**
68425700 GGGGTTGGGGCTCACCGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * ** *
68425723 ATCTGCTCCACTACTGCTTAGTGAGATAAGATTTGTAATTTTTAGCCTGTTACCCGACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
*
68425788 GGGGTTAAGGCTCACCGTCTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
68425811 ATCTACTCCTCTACTGCTTAGGGAGATAAGATCTGCAATTTCCAGCCTGTTACCC-ACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
* *
68425875 GGGGTAAAGGCTCACTGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
68425898 ATCTGCTCCGCTACTGCTTAAGGTGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
*
68425963 GGGGTTAAGGCTCACCGTGTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* *
68425986 ATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
*
68426051 GGGGTTAAAGCTCACCGT
66 GGGGTTAAGGCTCACCGT
68426069 GTTTTAGCTT
Statistics
Matches: 454, Mismatches: 65, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
87 81 0.18
88 371 0.82
89 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (88 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
GGGGTTAAGGCTCACCGTCTTCG
Found at i:68426090 original size:45 final size:44
Alignment explanation
Indices: 68425944--68426116 Score: 158
Period size: 45 Copynumber: 3.9 Consensus size: 44
68425934 AATTTCCAGC
* ** *
68425944 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTTTTAG
* * * * *
68425988 CTGCTCTA--CTACTGCTTAGGGAGAT-AAGAT--CTGTAATTTCTAG
1 CTG-T-TACCCTACTGCTTAGGGGGTTAAAGCTCACCGT-GTTT-TAG
68426031 CCTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTTTTAG
1 -CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTTTTAG
* *
68426076 CTTGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTT
1 C-TGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTT
68426117 CGATCTGCTT
Statistics
Matches: 102, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
41 3 0.03
42 4 0.04
43 5 0.05
44 37 0.36
45 45 0.44
46 5 0.05
47 3 0.03
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTTTTAG
Found at i:68426112 original size:133 final size:132
Alignment explanation
Indices: 68425945--68426200 Score: 435
Period size: 133 Copynumber: 1.9 Consensus size: 132
68425935 ATTTCCAGCC
*
68425945 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGC-TCTACTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGATCTGCTTC-ACTACTGCTTAGGG
68426009 AGATAAGATCTGTAA-TTTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTGTTT
65 AGATAAGATCTGTAACTTT-TAGCCTGTTACCC-ACTGCTTAGGGGGTTAAAGCTCACCGTGTTT
68426073 TAGCT
128 TAGCT
68426078 TGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTTAGGGA
* * *
68426143 GATAAGATTTGTAACTTTTAGCCTGTTACCCATTGCTTAGGGGGTTAAGGCTCACCGT
66 GATAAGATCTGTAACTTTTAGCCTGTTACCCACTGCTTAGGGGGTTAAAGCTCACCGT
68426201 CTTCGATCCA
Statistics
Matches: 117, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
132 25 0.21
133 87 0.74
134 5 0.04
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (132 bp):
TGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTTAGGGA
GATAAGATCTGTAACTTTTAGCCTGTTACCCACTGCTTAGGGGGTTAAAGCTCACCGTGTTTTAG
CT
Found at i:68426136 original size:308 final size:308
Alignment explanation
Indices: 68425762--68426379 Score: 918
Period size: 308 Copynumber: 2.0 Consensus size: 308
68425752 GATTTGTAAT
* * *
68425762 TTTTAGCCTGTTACCCGACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATCTACTCCTCTACTG
1 TTTTAGCCTGTTACCCGACTGCTTAGAGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTG
*
68425827 CTTAGGGAGATAAGATCTGCAA-TTTCCAGCCTGTTACCCACTGCTTAGGGGGTAAAGGCTCACT
66 CTTAGGGAGATAAGATCTGCAACTTT-CAGCCTGTTACCCACTGCTTAGGGGGTAAAGGCTCACC
** * * *
68425891 GTCTTCGATCTGCTCCGCTACTGCTTAAGG-TGATAAGATCTGTAAT-TTCCAGCCTGTTACCCT
130 GTCTTCGATCCACTCCACTACTG-TTAAGGAAGATAAGATCTGTAATCTT-CAGCCTATTACCCT
* ** *
68425954 ACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATC
193 ACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTGCTTAGGGAGATAAGATC
*
68426019 TGTAATTTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTG
258 TGTAATTTCTAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTG
* * * * *
68426070 TTTTAGCTTGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTG
1 TTTTAGCCTGTTACCCGACTGCTTAGAGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTG
* * * * *
68426135 CTTAGGGAGATAAGATTTGTAACTTTTAGCCTGTTACCCATTGCTTAGGGGGTTAAGGCTCACCG
66 CTTAGGGAGATAAGATCTGCAACTTTCAGCCTGTTACCCACTGCTTAGGGGGTAAAGGCTCACCG
* *
68426200 TCTTCGATCCACTCCACTACTGTTTAGGAAGATAAGATCTGTAATCTTCAGCCTATTTCCCTACT
131 TCTTCGATCCACTCCACTACTGTTAAGGAAGATAAGATCTGTAATCTTCAGCCTATTACCCTACT
* *
68426265 GTTTAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGCTTAGGGAGATAAGATCTGT
196 GCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTGCTTAGGGAGATAAGATCTGT
* *
68426330 AATTTCTAACCTGTTACCCTATTGCTTAGGGGGTTAAGGCTCACCGTG
261 AATTTCTAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTG
68426378 TT
1 TT
68426380 CGATCTGCTC
Statistics
Matches: 277, Mismatches: 30, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
307 5 0.02
308 267 0.96
309 5 0.02
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (308 bp):
TTTTAGCCTGTTACCCGACTGCTTAGAGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTG
CTTAGGGAGATAAGATCTGCAACTTTCAGCCTGTTACCCACTGCTTAGGGGGTAAAGGCTCACCG
TCTTCGATCCACTCCACTACTGTTAAGGAAGATAAGATCTGTAATCTTCAGCCTATTACCCTACT
GCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTGCTTAGGGAGATAAGATCTGT
AATTTCTAACCTGTTACCCTACTGCTTAGGGGGTTAAAGCTCACCGTG
Found at i:68426299 original size:88 final size:87
Alignment explanation
Indices: 68426078--68427850 Score: 2071
Period size: 88 Copynumber: 20.2 Consensus size: 87
68426068 TGTTTTAGCT
* * * *
68426078 TGTTACCCTACTGCTTAGAGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
* *
68426143 GATAAGATTTGTAACTTTTAGCC
66 GATAAGATCTGTAA-TTTCAGCC
* * * *
68426166 TGTTACCC-ATTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTGTTTAGGAA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68426230 GATAAGATCTGTAATCTTCAGCC
66 GATAAGATCTGTAAT-TTCAGCC
* * * * *
68426253 TATTTCCCTACTGTTTAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
*
68426318 GATAAGATCTGTAATTTCTAACC
66 GATAAGATCTGTAATTTC-AGCC
* * * * *
68426341 TGTTACCCTATTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTCCACTACAGCTTAAGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
*
68426406 GATAAGATCTATAATTTCCAGCC
66 GATAAGATCTGTAATTT-CAGCC
* * * ** * * *
68426429 TGTTACCTTACTACTTA-AGGGTTAAGGCTCACTATGTTCGATCTGCTCCACTACTGCTTAAGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68426493 GATAAGATCTGTAATCTTCAGCC
66 GATAAGATCTGTAAT-TTCAGCC
** * * *
68426516 TGTTACCCTACTATTTAGAGGGTTAAGGCTCACCATCTTCGATCCGTTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68426581 GATAAGATCTGTAATTTCTAGCC
66 GATAAGATCTGTAATTTC-AGCC
** ** *
68426604 TGTTACCC-ACTGCTTAGGGGGTTAAGATTCACCGTCTTCGATCTACTCCACTATTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
* *
68426668 GATAAGATCTGTAATTTTTAGCT
66 GATAAGATCTGTAA-TTTCAGCC
* * * *
68426691 TGTTACCTTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTGTTTAAGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
* *
68426756 GATAAGATCTGTAATCTTTAGCT
66 GATAAGATCTGTAAT-TTCAGCC
* * * * * * * *
68426779 TGTTTCGCTACTGTTTATGGGGTTATGGCTCACTGTGTTCGATCCGCTCCACTACTGGTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
*
68426844 AATAAGATCTGTAATTTCCAGCC
66 GATAAGATCTGTAATTT-CAGCC
* * ** ** * * * *
68426867 TGTTACCCTACTACTCAATGGGTTAAGGCTCATTGTGTTCGATCTGGTCCACTACTACTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
* * *
68426932 GATAAGATTTATAATTTTTAGCC
66 GATAAGATCTGTAA-TTTCAGCC
* * *
68426955 TGTTACCCTACTGCTTA-GGGGTTAAGGCTCACCGT-TTGCGATCCACTCTACTACTGTTTAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTT-CGATCCGCTCCACTACTGCTTAGGG
*
68427018 AGATAAGATCTGTAATTTTCATCC
65 AGATAAGATCTGTAA-TTTCAGCC
* * * * * *
68427042 TGTTACCCTACTGGTTAGGGGGATAAAGCTCACCGTCTTTGATCCACTCCACTACTGTTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68427107 GATAAGATCTGTAATCTTCAGCC
66 GATAAGATCTGTAAT-TTCAGCC
* * * * * * *
68427130 TGTTTCCCTGCTGTTTAGGGGGTTTAGGCTCACCGTCTTTGATCTGCTCCACTGCTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
* *
68427195 GATAAGATTTGTAATTTTCATCC
66 GATAAGATCTGTAA-TTTCAGCC
* * * * *
68427218 TGTTACCCTACTGCTTAGGGGGTTAAGGATCAACGTCTTCGATCCACTCCACTACTGTTTAAGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68427283 GATAAGATCTGTAATCTTCAGCC
66 GATAAGATCTGTAAT-TTCAGCC
* ** ** * * *
68427306 TATTTTCCTACTATTTAGAGGGTTAAGGCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68427371 GATAAGATCTGTAATTTCCAGCC
66 GATAAGATCTGTAATTT-CAGCC
* * * * * *
68427394 TGGTACCCTACTACTTAGGGGGTTAAGGCTCATCATGTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
*
68427459 GATAAGATTTGTAATTTCGAGCC
66 GATAAGATCTGTAATTTC-AGCC
* * * * * *
68427482 TGTTACCCTACTGCTTAGGGGGTTAAGGTTCATCGTGTTCGATCTGTTCCGCTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
**
68427547 GATAAGAAATGTAATATTCAGCC
66 GATAAGATCTGTAAT-TTCAGCC
* * *
68427570 TGTTACCCTACTGCTTAAGGGGTTAAGGCTCACCGTGTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
*
68427635 GATAAGATCTATAATTTTCAGCC
66 GATAAGATCTGTAA-TTTCAGCC
* * * * **
68427658 TGTTACCCTACTACTTAAGGGGTTAAGGCTCACCGTCTTCGATCCACTTCACTACTATTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
* * * **
68427723 GATAAGGTTTGTAATCTTTAAAC
66 GATAAGATCTGTAAT-TTCAGCC
* * * * *
68427746 TGTTTCCCTACTGTTTAGGGGGTTAAGGCTCATCGTCTTTGCTCCGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
68427811 GATAAGATCTGTAATTTCCAGCC
66 GATAAGATCTGTAATTT-CAGCC
* *
68427834 TGTTTCTCTACTGCTTA
1 TGTTACCCTACTGCTTA
68427851 AGGAGATAAG
Statistics
Matches: 1448, Mismatches: 213, Indels: 48
0.85 0.12 0.03
Matches are distributed among these distances:
86 3 0.00
87 307 0.21
88 1127 0.78
89 11 0.01
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (87 bp):
TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGA
GATAAGATCTGTAATTTCAGCC
Found at i:68426308 original size:44 final size:44
Alignment explanation
Indices: 68426179--68426316 Score: 129
Period size: 44 Copynumber: 3.1 Consensus size: 44
68426169 TACCCATTGC
*
68426179 TTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTGT
1 TTAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGT
** * * ** * * *
68426223 TTAGGAAGATAA-GATCTGTAATCTTC-AGCCTATTTCC-CTACTGT
1 TTAGGGGGTTAAGGCTCACT-GTCTTCGATCC-A-CTCCACTACTGT
*
68426267 TTAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGC
1 TTAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGT
68426311 TTAGGG
1 TTAGGG
68426317 AGATAAGATC
Statistics
Matches: 68, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
43 9 0.13
44 49 0.72
45 10 0.15
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (44 bp):
TTAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGT
Found at i:68426491 original size:43 final size:43
Alignment explanation
Indices: 68426360--68426491 Score: 101
Period size: 43 Copynumber: 3.0 Consensus size: 43
68426350 ATTGCTTAGG
** *
68426360 GGGTTAAGGCTCACCGTGTTCGATCTGCTCCACTACAGCTTAA
1 GGGTTAAGGCTCACTATGTTCGATCTGCTCCACTACTGCTTAA
* * * * * * *
68426403 GGAGATAA-GATCTA-TAAT-TTCCAGCCTGTTACC-TTACTACTTAA
1 GG-GTTAAGGCTC-ACT-ATGTTCGA-TCTGCT-CCACTACTGCTTAA
68426447 GGGTTAAGGCTCACTATGTTCGATCTGCTCCACTACTGCTTAA
1 GGGTTAAGGCTCACTATGTTCGATCTGCTCCACTACTGCTTAA
68426490 GG
1 GG
68426492 AGATAAGATC
Statistics
Matches: 63, Mismatches: 17, Indels: 18
0.64 0.17 0.18
Matches are distributed among these distances:
42 2 0.03
43 31 0.49
44 28 0.44
45 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (43 bp):
GGGTTAAGGCTCACTATGTTCGATCTGCTCCACTACTGCTTAA
Found at i:68427902 original size:43 final size:45
Alignment explanation
Indices: 68427797--68427903 Score: 159
Period size: 44 Copynumber: 2.5 Consensus size: 45
68427787 CTCCGCTCCA
* *
68427797 CTACTGCTTAG-GGAGATAAGATCTGTAATTTCCAGCCTGTTTCT
1 CTACTGCTTAGAGGAGATAAGATCTGTAATTTCCAACCTGTTTCC
*
68427841 CTACTGCTTA-AGGAGATAAGATCTGTAATTTTCAACCTG-TTCC
1 CTACTGCTTAGAGGAGATAAGATCTGTAATTTCCAACCTGTTTCC
68427884 CTACTGCTTAGAGG-GATAAG
1 CTACTGCTTAGAGGAGATAAG
68427904 GCTAGTGAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
43 19 0.33
44 39 0.67
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (45 bp):
CTACTGCTTAGAGGAGATAAGATCTGTAATTTCCAACCTGTTTCC
Found at i:68428079 original size:64 final size:64
Alignment explanation
Indices: 68427978--68428102 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
68427968 TGTATCTATG
*
68427978 CTTATGCCAAATAATTAGGATACTATGCTAAAAATGAATCAAATGCTCCTAACTAGATGTGATT
1 CTTATGCCAAATAATTAGGATACTATGATAAAAATGAATCAAATGCTCCTAACTAGATGTGATT
* * ** * *
68428042 CTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCTAATGCTCCTTACTAGATGTG
1 CTTATGCCAAATAATTAGGATACTATGATAAAAATGAATCAAATGCTCCTAACTAGATGTG
68428103 TTATGAATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (64 bp):
CTTATGCCAAATAATTAGGATACTATGATAAAAATGAATCAAATGCTCCTAACTAGATGTGATT
Found at i:68434631 original size:22 final size:22
Alignment explanation
Indices: 68434583--68434703 Score: 80
Period size: 25 Copynumber: 4.9 Consensus size: 22
68434573 CATTCAAGAT
68434583 AAAATAATATATAAAAATCTTTAA
1 AAAATAATATATAAAAA--TTTAA
*
68434607 AAAATAATATATAAACAATTCAA
1 AAAATAATATATAAA-AATTTAA
* *
68434630 AATATATAATGTGTAAAAAAAGTTTGAA
1 AA-A-ATAA--TATATAAAAA-TTT-AA
* *
68434658 ATACATAATATATGAAAATATTAA
1 A-AAATAATATATAAAAAT-TTAA
68434682 AGTAAATAATATATAAAAATTT
1 A--AAATAATATATAAAAATTT
68434704 GAAATGAGCG
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
23 6 0.08
24 22 0.29
25 31 0.40
26 2 0.03
27 12 0.16
28 3 0.04
29 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (22 bp):
AAAATAATATATAAAAATTTAA
Found at i:68434871 original size:44 final size:42
Alignment explanation
Indices: 68434805--68434948 Score: 148
Period size: 44 Copynumber: 3.3 Consensus size: 42
68434795 CATATATAAT
* *
68434805 GAAAATAATATTAGTATATAAATAGAAATAAAAATATAATAAATA
1 GAAAATAATAATAG--TATAAATAGAAATAATAA-ATAATAAATA
* *
68434850 GAAATATAATAATAGTATAAATATAAATAGATAAATAATAATTA
1 GAAA-ATAATAATAGTATAAATAGAAATA-ATAAATAATAAATA
*
68434894 GATAAATAATAATAGTATTAGAATAGCAA-AATAAAT-ATAAATA
1 GA-AAATAATAATAGTA-TA-AATAGAAATAATAAATAATAAATA
68434937 GAAACATAATAA
1 GAAA-ATAATAA
68434949 CAATAGTAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 15 0.17
44 42 0.49
45 12 0.14
46 15 0.17
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.28
Consensus pattern (42 bp):
GAAAATAATAATAGTATAAATAGAAATAATAAATAATAAATA
Found at i:68434876 original size:29 final size:28
Alignment explanation
Indices: 68434843--68434948 Score: 92
Period size: 29 Copynumber: 3.7 Consensus size: 28
68434833 TAAAAATATA
68434843 ATAAATAGAAATATAATAATAGTATAAAT
1 ATAAATAGAAATATAATAATAG-ATAAAT
68434872 ATAAATAGATAA-ATAATAATTAGATAAAT
1 ATAAATAGA-AATATAATAA-TAGATAAAT
* * * *
68434901 A-ATAATAGTATTAGAATAGCA-AAATAAAT
1 ATA-AATAGAAATATAATA--ATAGATAAAT
*
68434930 ATAAATAGAAACATAATAA
1 ATAAATAGAAATATAATAA
68434949 CAATAGTAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
27 1 0.02
28 2 0.03
29 52 0.84
30 6 0.10
31 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (28 bp):
ATAAATAGAAATATAATAATAGATAAAT
Found at i:68434906 original size:15 final size:15
Alignment explanation
Indices: 68434840--68434905 Score: 84
Period size: 15 Copynumber: 4.5 Consensus size: 15
68434830 AAATAAAAAT
68434840 ATAATAAATAGA-AA
1 ATAATAAATAGATAA
68434854 TATAAT-AATAGTATAA
1 -ATAATAAATAG-ATAA
68434870 AT-ATAAATAGATAA
1 ATAATAAATAGATAA
*
68434884 ATAATAATTAGATAA
1 ATAATAAATAGATAA
68434899 ATAATAA
1 ATAATAA
68434906 TAGTATTAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
14 13 0.28
15 31 0.67
16 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (15 bp):
ATAATAAATAGATAA
Found at i:68435942 original size:88 final size:87
Alignment explanation
Indices: 68435839--68438274 Score: 2900
Period size: 88 Copynumber: 27.7 Consensus size: 87
68435829 TTTCATTTCA
* * * ** * *
68435839 ATCTACTCCACTACTGCTTAGGGAGATATGATTTGTAATCTTCAGCCTACT-CCACTGCTGCTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCCTGTTACC-CTACTGCTTA
* * **
68435903 GGGAGATAAGGCTCACTATCTTCG
64 GGGGGTTAAGGCTCACCGTCTTCG
** *
68435927 ATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
* * * *
68435992 GGGGTCAAGGCTTACCCTCTTTG
65 GGGGTTAAGGCTCACCGTCTTCG
* *
68436015 ATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTATTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
**
68436080 GGGGTTGGGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* *
68436103 ATCTGCTCCACTACTACTTAGTGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
68436168 GGGGTTAAGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * *
68436191 ATCTACTCCTCTACTGCTTAGGGAGATAAGATCTGTAATTTCCATCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
* *
68436256 GAGGTTAAGGCTCACCGTCTTTG
65 GGGGTTAAGGCTCACCGTCTTCG
* * *
68436279 ATCTGCTCCACTACTGCTTAAGGCGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
*
68436344 GGGGTTAAGGCTCACCGTGTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
** *
68436367 ATCTGCTTTACTACTGCTTAGGGAGAGAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
* *
68436432 GGGGTTAAGGCTCACCGTGTTCA
65 GGGGTTAAGGCTCACCGTCTTCG
* * * * *
68436455 ATCTGCTCCGCTACTACTTAGGGATATAAGATCTGTAACTTTTAGCCTGTTACCCTATTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
*
68436520 GGGGATAAGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * * * **
68436543 AT-TCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTTAGCCTGTTTCCCTACTATTTA
1 ATCT-GCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCCTGTTACCCTACTGCTTA
* * * *
68436607 GGTGGTTCAGGCTCACTGTCTTTG
64 GGGGGTTAAGGCTCACCGTCTTCG
* * * * * *
68436631 ATCCGCTCCACTACTGCTTAGGGAAATAAGATCTGTAATTTCTAGCCTATTACCCTATTACTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTC-AGCCTGTTACCCTACTGCTTAG
* *
68436696 AGGGTTAAGGCTCACCGTGTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * * * *
68436719 ATCTGCACCACTA-TAGCTTAAGGAGATAAGATCTGTAATTTCCAGCCTGCTACCCTTCTACTTA
1 ATCTGCTCCACTACT-GCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTA
*
68436783 -GGGGTTAAGGCTCACCGTGTTCG
64 GGGGGTTAAGGCTCACCGTCTTCG
* * * * *
68436806 ATCTGCTCCACTACTTCTTAAGGAGATAAGATCTGTAGTTTTTAGCCTGTTACCCTACTGCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA-ATTTCAGCCTGTTACCCTACTGCTTAG
** *
68436871 GGGGTTAAGGCTCACTATGTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* *
68436894 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTT-A
* *
68436959 -GGGGTTAAGGCTCACTGTGTTCG
64 GGGGGTTAAGGCTCACCGTCTTCG
* * *
68436982 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTATTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
*
68437047 GGTGTTAAGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
** * * * * * *
68437070 ATCCACTCCACTACTGTTTAGGGAGATAAGATCTATAATCCTCAGCCTGTTTCTCTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCCTGTTACCCTACTGCTTAG
**
68437135 GGGGTTAAGGCTCACTATCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* *
68437158 ATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTAGCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
* *
68437223 GGGGTTAAGACTCACTGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * * *
68437246 ATCTGCCCCACTATTGCTTAGGGAGATAAAATCTGTAATTTTTAGCCTGTTACCCTACTGCTTA-
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
68437310 GGGGTTAAGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * * *
68437333 ATGC-ACTCCACTACTG-TTGAGGGAGATAAGATCTGAAATCTTCAGCCTGTTTCCCTACT-ATT
1 AT-CTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTAAT-TTCAGCCTGTTACCCTACTGCTT
* * * * *
68437395 TGTAGGGTTATGGCTCACTGTGTTCG
63 AG-GGGGTTAAGGCTCACCGTCTTCG
* * * *
68437421 ATCCGCTCCACTACTGGTTAGGGAAATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
* *
68437486 GGGGTTAAGGCTCACCGTGTTTG
65 GGGGTTAAGGCTCACCGTCTTCG
* *
68437509 ATCTGGTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
*
68437574 GGGGTTATGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
** * * * *
68437597 ATCCACTCTACTACTGTTTAGGGAGATAAGATCTGTAATTTTCATCCTGTTACCCTACTGGTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
* * *
68437662 AGGGTTAATGCTCACCATCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
** * * * * ** *
68437685 ATCCACTCCACTACAGTTTAGGGAGATATGATCTGTAATCTTCAGCCTATTTTCCTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCCTGTTACCCTACTGCTTAG
* *
68437750 AGGGTTAAGGCTCACCGTTTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * * *
68437773 ATCTACTCCACTACTTCTTAGGGAGATAAGATCTGTAATTTCCATCCTGTTACCCTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTACCCTACTGCTTAG
* *
68437838 GGGGTTAAGGCTCATCGTGTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* *
68437861 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTC-AGCCTGTTACCCTACTGCTTAG
* *
68437926 GGGGTTAAGGCTCATCGTGTTC-
65 GGGGTTAAGGCTCACCGTCTTCG
** ** *
68437948 AGTCTATTCCACTACTGCTTAGGGAGATAAGAAATGTAATTTTTAGCCTGTTACCCTACTGCTTT
1 A-TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGC-TT
*
68438013 A-GGGGTTAAGGCTCACCGTGTTCG
63 AGGGGGTTAAGGCTCACCGTCTTCG
*
68438037 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTA-
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTAG
* *
68438101 GGAGTTAAGGCTCA-CTTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
** * * * * * * *
68438123 ATCCACTTCACTATTGATTAGGGAGATAAGATCTGTAATCTTCAACCTGTTTCTCTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCCTGTTACCCTACTGCTTAG
68438188 GGGGTTAAGGCTCACCGTCTTCG
65 GGGGTTAAGGCTCACCGTCTTCG
* * * *
68438211 ATTTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTTCCCTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTGTTACCCTACTGCTTA
68438275 AGGAGATAAG
Statistics
Matches: 2039, Mismatches: 268, Indels: 82
0.85 0.11 0.03
Matches are distributed among these distances:
85 1 0.00
86 63 0.03
87 188 0.09
88 1761 0.86
89 26 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (87 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCTCACCGTCTTCG
Found at i:68436988 original size:44 final size:42
Alignment explanation
Indices: 68436779--68437004 Score: 118
Period size: 44 Copynumber: 5.2 Consensus size: 42
68436769 TACCCTTCTA
* * *
68436779 CTTAGGGGTTAAGGCTCACCGTGTTCGATCTGCTCCACTACTT
1 CTTAGGGGTTAAGGCTCA-CTTGTTCGATCTGTTCCACTACTG
* * * * * * * *
68436822 CTTAAGGAGATAAGATCTGTAGTTTTTAG-CCTGTTACC-CTACTG
1 CTT-AGGGGTTAAG-GCT-CACTTGTTCGATCTGTT-CCACTACTG
* * *
68436866 CTTCGGGGGTTAAGGCTCACTATGTTCGATCTGCTCCACTACTA
1 CTT-AGGGGTTAAGGCTCACT-TGTTCGATCTGTTCCACTACTG
* * * * * * *
68436910 CTTAGGGAGATAAGATCTGTAATTTTTAG-CCTGTTACC-CTACTG
1 CTTAGGG-GTTAAG-GCT-CACTTGTTCGATCTGTT-CCACTACTG
68436954 CTTCAGGGGTTAAGGCTCACTGTGTTCGATCTGTTCCACTACTG
1 CTT-AGGGGTTAAGGCTCACT-TGTTCGATCTGTTCCACTACTG
68436998 CTTAGGG
1 CTTAGGG
68437005 AGATAAGATC
Statistics
Matches: 128, Mismatches: 40, Indels: 30
0.65 0.20 0.15
Matches are distributed among these distances:
42 4 0.03
43 26 0.20
44 75 0.59
45 20 0.16
46 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (42 bp):
CTTAGGGGTTAAGGCTCACTTGTTCGATCTGTTCCACTACTG
Found at i:68437040 original size:44 final size:44
Alignment explanation
Indices: 68436816--68438327 Score: 211
Period size: 44 Copynumber: 34.5 Consensus size: 44
68436806 ATCTGCTCCA
* * * * *
68436816 CTACTTCTTAAGGAGATAAGATCTGTAGTTTTTAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * * * *
68436860 CTACTGCTTCGGGGGTTAAG-GCTCACT-ATGTTC-GATCTGCT-CC
1 CTACTGCTTAGGGAGATAAGATCT-A-TAATTTTCAG-CCTGTTACC
* * *
68436903 ACTACTACTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * *
68436948 CTACTGCTTCAGGG-GTTAAG-GCTCACT-GTGTTC-GATCTGTT-CC
1 CTACTGCTT-AGGGAGATAAGATCT-A-TAATTTTCAG-CCTGTTACC
*
68436991 ACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTATTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * *** * * **
68437036 CTACTGCTTAGGGTGTTAAG-GCTCACCGTCTTCGATCC-ACT-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTC-AGCCTGTTACC
* ** * *
68437079 ACTACTGTTTAGGGAGATAAGATCTATAATCCTCAGCCTGTTTCT
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * * * *
68437124 CTACTGTTTAGGGGGTTAAG-GCTCACT-ATCTTCGATCC-GCT-CC
1 CTACTGCTTAGGGAGATAAGATCT-A-TAATTTTC-AGCCTGTTACC
* * *
68437167 ACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTAGC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * * **
68437212 CTACTGCTTAGGGGGTTAAGA-CTCACT-GTCTTC-GATCTG-CCCC
1 CTACTGCTTAGGGAGATAAGATCT-A-TAATTTTCAG-CCTGTTACC
* * * *
68437255 ACTATTGCTTAGGGAGATAAAATCTGTAATTTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * *** *
68437300 CTACTGCTTAGGG-GTTAAG-GCTCACCGTCTTCGATGCAC---T-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTC-A-GC-CTGTTACC
* *
68437342 ACTACTG-TTGAGGGAGATAAGATCTGA-AATCTTCAGCCTGTTTCC
1 -CTACTGCTT-AGGGAGATAAGATCT-ATAATTTTCAGCCTGTTACC
** ** * * * * * *
68437387 CTACTATTTGTAGGGTTAT-GGCTC-ACT-GTGTTCGATCC-GCT-CC
1 CTACT-GCT-TAGGGAGATAAGATCTA-TAATTTTC-AGCCTGTTACC
* * * *
68437430 ACTACTGGTTAGGGAAATAAGATCTGTAATTTCCAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * *** * * *
68437475 CTACTGCTCAGGGGGTTAAG-GCTCACCGTGTTTGA-TCTGGT-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAAT-TTTCAGCCTGTTACC
* *
68437518 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * *** * * **
68437563 CTACTGCTTAGGGGGTTATG-GCTCACCGTCTTCGATCCACTCTA--
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTC-AGCCTGT-TACC
* * *
68437607 CTACTGTTTAGGGAGATAAGATCTGTAATTTTCATCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * ** * * **
68437651 CTACTGGTTAGAGG-GTTAATGCTC-ACCATCTTCGATCC-ACT-CC
1 CTACTGCTTAG-GGAGATAA-GATCTATAATTTTC-AGCCTGTTACC
* * * * * * **
68437694 ACTACAGTTTAGGGAGATATGATCTGTAATCTTCAGCCTATTTTC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * *** * **
68437739 CTACTGTTTAGAGG-GTTAAG-GCTCACCGTTTTC-GATCTACT-CC
1 CTACTGCTTAG-GGAGATAAGATCT-ATAATTTTCAG-CCTGTTACC
* * * *
68437782 ACTACTTCTTAGGGAGATAAGATCTGTAATTTCCATCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * ** * *
68437827 CTACTACTTAGGGGGTTAAG-GCTCATCGTGTTC-GATCTGTT-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTCAG-CCTGTTACC
*
68437870 ACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTC-AGCCTGTTACC
* * * * ** * * *
68437915 CTACTGCTTCGGGGGTTAAG-GCTCATCGTGTTCAGTCTATT-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTCAGCCTGTTACC
** * *
68437958 ACTACTGCTTAGGGAGATAAGAAATGTAATTTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * *** * * *
68438003 CTACTGCTTTAGGG-GTTAAG-GCTCACCGTGTTC-GATCTGCT-CC
1 CTACTGC-TTAGGGAGATAAGATCT-ATAATTTTCAG-CCTGTTACC
* *
68438046 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * * ** *
68438091 CTACTGCTTA-GGAGTTAAG-GCT-CACTTCTTCGATCCACTT-CA
1 CTACTGCTTAGGGAGATAAGATCTATAATT-TTC-AGCCTGTTACC
* * * * * * *
68438133 CTATTGATTAGGGAGATAAGATCTGTAATCTTCAACCTGTTTCT
1 CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * * * *** * ** *
68438177 CTACTGTTTAGGGGGTTAAG-GCTCACCGTCTTC-GATTTGCT-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAATTTTCAG-CCTGTTACC
* * * *
68438220 ACTATTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
* * *
68438265 CTACTGCTTAAGGAGATAAGATCTGTAATTTTCAACCTGTT-CC
1 CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
*
68438308 CTACTGCTTAGGGGGATAAG
1 CTACTGCTTAGGGAGATAAG
68438328 GCTAGTGAAT
Statistics
Matches: 1002, Mismatches: 342, Indels: 249
0.63 0.21 0.16
Matches are distributed among these distances:
41 4 0.00
42 30 0.03
43 166 0.17
44 683 0.68
45 108 0.11
46 10 0.01
47 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACC
Found at i:68444921 original size:44 final size:44
Alignment explanation
Indices: 68444873--68445330 Score: 916
Period size: 44 Copynumber: 10.4 Consensus size: 44
68444863 AAATACAAAG
68444873 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68444917 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68444961 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445005 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445049 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445093 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445137 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445181 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445225 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445269 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
68445313 TAAGAAAATCTAAAATAA
1 TAAGAAAATCTAAAATAA
68445331 TAAAATAAAA
Statistics
Matches: 414, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 414 1.00
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.23
Consensus pattern (44 bp):
TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
Found at i:68445897 original size:29 final size:30
Alignment explanation
Indices: 68445864--68445920 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
68445854 TAATTTAATA
68445864 TGCAATTGTATACATG-AACTTTGATTTTG
1 TGCAATTGTATACATGAAACTTTGATTTTG
* * *
68445893 TGCAATTTTGTACATGAAATTTTGATTT
1 TGCAATTGTATACATGAAACTTTGATTT
68445921 GATCCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (30 bp):
TGCAATTGTATACATGAAACTTTGATTTTG
Found at i:68445921 original size:29 final size:30
Alignment explanation
Indices: 68445863--68445935 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
68445853 ATAATTTAAT
* *
68445863 ATGCAATTGTATACATGAACTTTGATTTTG
1 ATGCAATTTTGTACATGAACTTTGATTTTG
*
68445893 -TGCAATTTTGTACATGAAATTTTGA-TTTG
1 ATGCAATTTTGTACATG-AACTTTGATTTTG
*
68445922 ATCCAATTCTTGTA
1 ATGCAATT-TTGTA
68445936 AGTTATTAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 18 0.50
30 13 0.36
31 5 0.14
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (30 bp):
ATGCAATTTTGTACATGAACTTTGATTTTG
Found at i:68445929 original size:30 final size:30
Alignment explanation
Indices: 68445874--68445935 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
68445864 TGCAATTGTA
*
68445874 TACATGAACTTTGATTTTGTGCAATT-TTG
1 TACATGAACTTTGATTTTGTCCAATTCTTG
*
68445903 TACATGAAATTTTGA-TTTGATCCAATTCTTG
1 TACATG-AACTTTGATTTTG-TCCAATTCTTG
68445934 TA
1 TA
68445936 AGTTATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 10 0.36
30 13 0.46
31 5 0.18
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (30 bp):
TACATGAACTTTGATTTTGTCCAATTCTTG
Found at i:68446338 original size:12 final size:11
Alignment explanation
Indices: 68446303--68446352 Score: 61
Period size: 10 Copynumber: 4.7 Consensus size: 11
68446293 CAAGCCACCC
68446303 TATT-TTTATT
1 TATTATTTATT
68446313 T-TTATTTATT
1 TATTATTTATT
*
68446323 TATTATTTGTT
1 TATTATTTATT
68446334 ATATTATTTATT
1 -TATTATTTATT
68446346 T-TTATTT
1 TATTATTT
68446353 TACTAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 14 0.40
11 9 0.26
12 10 0.29
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (11 bp):
TATTATTTATT
Found at i:68446535 original size:13 final size:14
Alignment explanation
Indices: 68446517--68446546 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
68446507 TTATTATTGT
68446517 TTTATTTAT-TTTA
1 TTTATTTATCTTTA
68446530 TTTATTTATCTTTA
1 TTTATTTATCTTTA
68446544 TTT
1 TTT
68446547 TTAATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTTATCTTTA
Found at i:68448407 original size:9 final size:9
Alignment explanation
Indices: 68448393--68448419 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
68448383 AAGCATAGGG
68448393 GAGTGAAAA
1 GAGTGAAAA
68448402 GAGTGAAAA
1 GAGTGAAAA
68448411 GAGTGAAAA
1 GAGTGAAAA
68448420 ACAAGCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (9 bp):
GAGTGAAAA
Found at i:68450015 original size:41 final size:41
Alignment explanation
Indices: 68449960--68450042 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
68449950 ATGAGTGAAG
*
68449960 AATAATTTTGGTGAAATATGTTTCATTCTGTCACCTTTGAT
1 AATAATTTTGGTGAAATATGTTTCATTCTATCACCTTTGAT
*
68450001 AATAATTTTGGTGAAATATGTTTCGTTCTATCACCTTTGAT
1 AATAATTTTGGTGAAATATGTTTCATTCTATCACCTTTGAT
68450042 A
1 A
68450043 TAACCACCCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (41 bp):
AATAATTTTGGTGAAATATGTTTCATTCTATCACCTTTGAT
Found at i:68471722 original size:26 final size:26
Alignment explanation
Indices: 68471693--68471776 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
68471683 TGGTACAAAT
* *
68471693 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
68471719 TGATAACGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68471745 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68471771 TGATAA
1 TGATAA
68471777 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68476222 original size:21 final size:21
Alignment explanation
Indices: 68476196--68476235 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
68476186 TTTGCTTATA
68476196 TTTCTG-CTGCTATTCTTTGCT
1 TTTCTGTCTGCT-TTCTTTGCT
*
68476217 TTTCTGTCTTCTTTCTTTG
1 TTTCTGTCTGCTTTCTTTG
68476236 TCCTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.03, C:0.23, G:0.12, T:0.62
Consensus pattern (21 bp):
TTTCTGTCTGCTTTCTTTGCT
Found at i:68476745 original size:45 final size:45
Alignment explanation
Indices: 68476672--68477159 Score: 305
Period size: 45 Copynumber: 10.9 Consensus size: 45
68476662 AGATTTATAG
* * * *
68476672 CTTTAATCTACTCTACTGTAATTTCAGAGAGATAAGATTTGTTAT
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
* * * *
68476717 CTTCAATCTGCGCCACTGCAACTTCAGAGAGATAACATTTGTTGT
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
* * * * ** *
68476762 CTTCAATCTACTCCATTGCAACTAT-AG-GAAGAAAAGA-TTCATAG
1 CTTTAATCTGCTCCACTGCAACT-TCAGAG-AGATAAGATTTGTTAT
* ** * * * * *
68476806 CTGTAATCTATTCTACCGCAACTTTAGAGAAATAAGATTCG-TAT
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
* * ** *
68476850 CTTTAGTCTGCTCCATTTTAACTTCA-AGGAGATGAGAGTTT-TTAT
1 CTTTAATCTGCTCCACTGCAACTTCAGA-GAGATAAGA-TTTGTTAT
* * * * * * *
68476895 CTTTAA-CATGTTCCATTACAACTTTAGGGAGATAAGGTTTG-TAG
1 CTTTAATC-TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
* * * * * * * *
68476939 CTTTAATATGTTCTACTACAACTTCAGAAAGATAAGATTCGCTAA
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
*
68476984 CTTCAATCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGTTAT
1 CTTTAATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGTTAT
* * * * * * *
68477029 CTTTAACCTGCTTCACTGTAACTTTAGGGAGATAAGGTTTG-TAG
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
* * * * * * *
68477073 CTTTAATCTGTTCTATTGCAACTTTAGATAGATAAGATTTGCTAA
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
*
68477118 CTTCAATCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGT
1 CTTTAATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGT
68477160 AACTTGTAGC
Statistics
Matches: 333, Mismatches: 93, Indels: 34
0.72 0.20 0.07
Matches are distributed among these distances:
43 2 0.01
44 128 0.38
45 201 0.60
46 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (45 bp):
CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTAT
Found at i:68477052 original size:134 final size:134
Alignment explanation
Indices: 68476669--68477159 Score: 524
Period size: 134 Copynumber: 3.7 Consensus size: 134
68476659 TTGAGATTTA
** * * * * * * *
68476669 TAGCTTTAATCTACTCTACTGTAATTTCAGAGAGATAAGATTTGTTATCTTCAATCTGCGCCACT
1 TAGCTTTAATCTGTTCTACTGCAACTTCAGAAAGATAAGATTCGCTAACTTCAATCTGCTCCACT
* * * * * * * * *
68476734 GCAACTTC-AGAGAGATAACATTTGTTGTCTTCAATCTACTCCATTGCAACTATAGGAAGAAAAG
66 GCAACTTCAAGA-AGATAAGATTTGTTATCTTTAACCTGCTTCATTGCAACTTTAGGGAGATAAG
* **
68476798 ATTCA
130 GTTTG
* * * * * * * *
68476803 TAGCTGTAATCTATTCTACCGCAACTTTAGAGAA-ATAAGATTCG-TATCTTTAGTCTGCTCCAT
1 TAGCTTTAATCTGTTCTACTGCAACTTCAGA-AAGATAAGATTCGCTAACTTCAATCTGCTCCAC
** * * * *
68476866 TTTAACTTCAAGGAGATGAGAGTTT-TTATCTTTAACATG-TTCCATTACAACTTTAGGGAGATA
65 TGCAACTTCAAGAAGATAAGA-TTTGTTATCTTTAACCTGCTT-CATTGCAACTTTAGGGAGATA
68476929 AGGTTTG
128 AGGTTTG
* *
68476936 TAGCTTTAATATGTTCTACTACAACTTCAGAAAGATAAGATTCGCTAACTTCAATCTGCTCCACT
1 TAGCTTTAATCTGTTCTACTGCAACTTCAGAAAGATAAGATTCGCTAACTTCAATCTGCTCCACT
* *
68477001 GCAACTTCAAGAAGATAAGATTTGTTATCTTTAACCTGCTTCACTGTAACTTTAGGGAGATAAGG
66 GCAACTTCAAGAAGATAAGATTTGTTATCTTTAACCTGCTTCATTGCAACTTTAGGGAGATAAGG
68477066 TTTG
131 TTTG
* * * *
68477070 TAGCTTTAATCTGTTCTATTGCAACTTTAGATAGATAAGATTTGCTAACTTCAATCTGCTCCACT
1 TAGCTTTAATCTGTTCTACTGCAACTTCAGAAAGATAAGATTCGCTAACTTCAATCTGCTCCACT
68477135 GCAACTTCAAGAAGATAAGATTTGT
66 GCAACTTCAAGAAGATAAGATTTGT
68477160 AACTTGTAGC
Statistics
Matches: 295, Mismatches: 54, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
132 3 0.01
133 96 0.33
134 193 0.65
135 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (134 bp):
TAGCTTTAATCTGTTCTACTGCAACTTCAGAAAGATAAGATTCGCTAACTTCAATCTGCTCCACT
GCAACTTCAAGAAGATAAGATTTGTTATCTTTAACCTGCTTCATTGCAACTTTAGGGAGATAAGG
TTTG
Found at i:68477081 original size:89 final size:89
Alignment explanation
Indices: 68476957--68477160 Score: 214
Period size: 89 Copynumber: 2.3 Consensus size: 89
68476947 TGTTCTACTA
* * *
68476957 CAACTTC-AGAAAGATAAGATTCGCTAACTTCAATCTGCTCCACTGCAACTTCAAGA-AGATAAG
1 CAACTTCAAG-AAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAACTT-AAGATAGATAAG
* * * *
68477020 ATTTGTTATCTTTAACCTGCTTCACTG
63 ATTTGCTAACTTCAACCTGCTCCACTG
* * * * * * * * *
68477047 TAACTTTAGGGAGATAAGGTTTGTAGCTTTAATCTGTTCTATTGCAACTTTAGATAGATAAGATT
1 CAACTTCAAGAAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTAAGATAGATAAGATT
*
68477112 TGCTAACTTCAATCTGCTCCACTG
66 TGCTAACTTCAACCTGCTCCACTG
68477136 CAACTTCAAGAAGATAAGATTTGTA
1 CAACTTCAAGAAGATAAGATTTGTA
68477161 ACTTGTAGCT
Statistics
Matches: 90, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
88 3 0.03
89 71 0.79
90 15 0.17
91 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (89 bp):
CAACTTCAAGAAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTAAGATAGATAAGATT
TGCTAACTTCAACCTGCTCCACTG
Found at i:68477316 original size:94 final size:94
Alignment explanation
Indices: 68477215--68477394 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 94
68477205 CTTGCTACGA
* * * * * *
68477215 TAGATTTAATCCTACCCACTGCAACTTTAGAGGTATAGGATTTGTCGCTTCAATCTGCTCTACTA
1 TAGATTTAATCCAACCCACTACAACTTCAGAGGTATAAGACTTGTCGCTTCAATCAGCTCTACTA
* *
68477280 CAACTTTAGGGAGATAAGATTCGCCACAG
66 CAACTTCAGAGAGATAAGATTCGCCACAG
* * * *
68477309 TAGATTTAATCCAACCTACTACAACTTCAGAGGTATAAGACTTGTGGCTTTAATCAGCTCTACTG
1 TAGATTTAATCCAACCCACTACAACTTCAGAGGTATAAGACTTGTCGCTTCAATCAGCTCTACTA
68477374 CAACTTCAGAGAGATAAGATT
66 CAACTTCAGAGAGATAAGATT
68477395 TGCCGCCCGT
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (94 bp):
TAGATTTAATCCAACCCACTACAACTTCAGAGGTATAAGACTTGTCGCTTCAATCAGCTCTACTA
CAACTTCAGAGAGATAAGATTCGCCACAG
Found at i:68477677 original size:94 final size:94
Alignment explanation
Indices: 68477516--68477849 Score: 445
Period size: 94 Copynumber: 3.6 Consensus size: 94
68477506 GGGAGAGATA
* * * * * *
68477516 CATGATAACTTCAATCTGTACCACTGCAACTTCAGAGGTATGGGATTTGTGGCTTTAATCTTCTC
1 CATGATAACTTCGATCTGTCCCACTGCAACTTCAGGGGTATAGGATTTATGGCTTTAATCTACTC
* *
68477581 CACTGCAACTTCAGAGATATGAGATTCAC
66 CACTGCAACTTCAGAGAGATAAGATTCAC
* * * *
68477610 CATGATAACTTCTATCTGTCCCATTGCAACTTTAGGGGTATAGAATTTATGGCTTTAATCTACTC
1 CATGATAACTTCGATCTGTCCCACTGCAACTTCAGGGGTATAGGATTTATGGCTTTAATCTACTC
* *
68477675 CACTGCTACTTCAGGGAGATAAGATTCAC
66 CACTGCAACTTCAGAGAGATAAGATTCAC
* * ** * *
68477704 CATGATAACTTCGATTTGTCCTACTATAACTTCAGGGGTATAGGATTTTTGGCTTTAATCTGCTC
1 CATGATAACTTCGATCTGTCCCACTGCAACTTCAGGGGTATAGGATTTATGGCTTTAATCTACTC
* *
68477769 CACTACAACTTCAGAGAGATAAGACTT-TC
66 CACTGCAACTTCAGAGAGATAAGA-TTCAC
*
68477798 CATGATAACTTCGATCTATCCCACTGCAACTTCAGGGGTATAGGATTTATGG
1 CATGATAACTTCGATCTGTCCCACTGCAACTTCAGGGGTATAGGATTTATGG
68477850 TTTCTCTAAT
Statistics
Matches: 206, Mismatches: 33, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
94 204 0.99
95 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (94 bp):
CATGATAACTTCGATCTGTCCCACTGCAACTTCAGGGGTATAGGATTTATGGCTTTAATCTACTC
CACTGCAACTTCAGAGAGATAAGATTCAC
Found at i:68490354 original size:18 final size:19
Alignment explanation
Indices: 68490303--68490346 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
68490293 TACAATTTGT
68490303 AATAA-AATATAT-AAATA
1 AATAATAATATATAAAATA
68490320 AATAATAATATATAAAAT-
1 AATAATAATATATAAAATA
68490338 AATAATAAT
1 AATAATAAT
68490347 TGTGAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.20
18 16 0.64
19 4 0.16
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AATAATAATATATAAAATA
Found at i:68490403 original size:19 final size:20
Alignment explanation
Indices: 68490371--68490420 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
68490361 AAAATAAAAC
**
68490371 AAATAAATGTATAAATA-AA
1 AAATAAATAAATAAATACAA
68490390 AAATAAATAAATAAATACAA
1 AAATAAATAAATAAATACAA
68490410 AGAA-AAATAAA
1 A-AATAAATAAA
68490421 GTATAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 15 0.56
20 10 0.37
21 2 0.07
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (20 bp):
AAATAAATAAATAAATACAA
Found at i:68490426 original size:23 final size:22
Alignment explanation
Indices: 68490366--68490427 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
68490356 AAGAAAAAAT
*
68490366 AAAACAAATAAATGTATAAATAA
1 AAAATAAATAAA-GTATAAATAA
68490389 AAAATAAAT-AA--ATAAATACA
1 AAAATAAATAAAGTATAAATA-A
68490409 AAGAA-AAATAAAGTATAAA
1 AA-AATAAATAAAGTATAAA
68490428 AAATTAAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
19 7 0.21
20 7 0.21
21 4 0.12
22 2 0.06
23 13 0.39
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (22 bp):
AAAATAAATAAAGTATAAATAA
Found at i:68494678 original size:26 final size:26
Alignment explanation
Indices: 68494642--68494751 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
68494632 CATGAAATTC
68494642 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
68494668 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
68494694 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
68494720 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
68494746 TTATCA
1 TTATCA
68494752 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:68495118 original size:24 final size:25
Alignment explanation
Indices: 68495074--68495120 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
68495064 AAATAAAATT
*
68495074 TTTAAAATATAATAAATCAAATACA
1 TTTAAAATATAATAAAACAAATACA
*
68495099 TTTAAAA-ATATTAAAACAAATA
1 TTTAAAATATAATAAAACAAATA
68495121 TTAAAACAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (25 bp):
TTTAAAATATAATAAAACAAATACA
Found at i:68495119 original size:12 final size:12
Alignment explanation
Indices: 68495104--68495129 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68495094 ATACATTTAA
68495104 AAATATTAAAAC
1 AAATATTAAAAC
68495116 AAATATTAAAAC
1 AAATATTAAAAC
68495128 AA
1 AA
68495130 GAAACAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:68495975 original size:22 final size:22
Alignment explanation
Indices: 68495948--68496024 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
68495938 TAAAATTTCG
*
68495948 TATCATAT-TACATATCAGAGCA
1 TATCATATAT-CATATCAAAGCA
*
68495970 TGTCATATATCATATCAAAGCA
1 TATCATATATCATATCAAAGCA
* * * *
68495992 TATCATGTA-AAGTATCAGAGCT
1 TATCATATATCA-TATCAAAGCA
68496014 TATCATATATC
1 TATCATATATC
68496025 GTACTAGAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
21 1 0.02
22 41 0.95
23 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (22 bp):
TATCATATATCATATCAAAGCA
Found at i:68500179 original size:29 final size:30
Alignment explanation
Indices: 68500136--68500194 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
68500126 TTAAGTTTAA
*
68500136 TGTGCAATTTTATACATG-AATGTTGATTT
1 TGTGCAATTTCATACATGAAATGTTGATTT
* *
68500165 TGTGTAATTTCATACATGAAATTTTGATTT
1 TGTGCAATTTCATACATGAAATGTTGATTT
68500195 GATTCAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (30 bp):
TGTGCAATTTCATACATGAAATGTTGATTT
Found at i:68501551 original size:42 final size:42
Alignment explanation
Indices: 68501491--68501595 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
68501481 GGGATTCTAA
* * *
68501491 GGCTGGAATAGGATTGTTTGGCTGCAGAGATATGACATTCTG
1 GGCTGGAATAGAACTGTTTGGCAGCAGAGATATGACATTCTG
* * * *
68501533 GGCTGGAATAGAACTGTTTGGCAGTAGGGATATGGCATTTTG
1 GGCTGGAATAGAACTGTTTGGCAGCAGAGATATGACATTCTG
68501575 GGCTGGAATAGAACTGTTTGG
1 GGCTGGAATAGAACTGTTTGG
68501596 TACCATGGAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.24, C:0.10, G:0.35, T:0.30
Consensus pattern (42 bp):
GGCTGGAATAGAACTGTTTGGCAGCAGAGATATGACATTCTG
Found at i:68501712 original size:5 final size:5
Alignment explanation
Indices: 68501702--68501774 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
68501692 AATATTTAAC
* * * *
68501702 TAAAA TAAAA TAAAA TAAAA TAATAA -ATAA TAAAA GAAAA TAAAG GAAAA
1 TAAAA TAAAA TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA TAAAA TAAAA
68501752 TAATAAA TAAAAA TAAAAA TAAA
1 T-A-AAA T-AAAA T-AAAA TAAA
68501775 GATTGGGTTG
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
4 2 0.04
5 35 0.62
6 13 0.23
7 6 0.11
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:68501736 original size:30 final size:29
Alignment explanation
Indices: 68501718--68501774 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
68501708 AAAATAAAAT
* *
68501718 AAAATAATAAATAATAAAAGAAAATAAAGG
1 AAAATAATAAAT-ATAAAATAAAATAAAAG
68501748 AAAATAATAAATA-AAAATAAAAATAAA
1 AAAATAATAAATATAAAAT-AAAATAAA
68501775 GATTGGGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 4 0.16
29 9 0.36
30 12 0.48
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (29 bp):
AAAATAATAAATATAAAATAAAATAAAAG
Found at i:68507317 original size:29 final size:30
Alignment explanation
Indices: 68507285--68507343 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
68507275 TATGGTTTAA
*
68507285 TGTGTAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
68507314 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
68507344 GATCCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Done.