Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 212 of 310
Found at i:69482962 original size:99 final size:98
Alignment explanation
Indices: 69482783--69483205 Score: 467
Period size: 99 Copynumber: 4.4 Consensus size: 98
69482773 TGGGTTAAGT
*
69482783 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCCTTATCGAAGCCGATGCCATGTCC
1 TGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCCTTATCGAAGCCGATGCCATGTCC
*
69482848 CAGACATGGTCTTACACTAGCTCTCATACTTACG
66 CAGACATGATCTTACACTAGCTCTCAT-CTTACG
*
69482882 TGCTGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCCTTATCGAAGCCGATGCCATGTCC
1 TGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCCTTATCGAAGCCGATGCCATGTCC
*
69482947 CAGACATGGTCTTACACTAGCTCTCATACTTACG
66 CAGACATGATCTTACACTAGCTCTCAT-CTTACG
* * * * * * * **
69482981 TGCTGATTCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCATATCCATGCTTATGCCATGTC
1 TGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCT-ATCCTTATCGAAGCCGATGCCATGTC
* *
69483046 CCAGACATGATCTTACACT-G---ACATGTCT-CG
65 CCAGACATGATCTTACACTAGCTCTCATCT-TACG
* * * *
69483076 TAGCCGA-TGCATGTCCCAGACAT-GTCTTACACTAGCT-TAC--ATCTAAAGGCCGATG-CATG
1 T-GCCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCCTTATC-GAA-GCCGATGCCATG
* * * * *
69483135 TCCCGGACAT-ATCTTACACTGGCACTCATCTCA-A
63 TCCCAGACATGATCTTACACTAGCTCTCATCTTACG
*
69483169 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 TGCCGATTCCATGTCCCAGACATGGTCTTACACTGGC
69483206 ACACAAATTA
Statistics
Matches: 284, Mismatches: 28, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
90 13 0.05
91 15 0.05
92 12 0.04
93 15 0.05
94 30 0.11
95 19 0.07
96 8 0.03
99 135 0.48
100 37 0.13
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (98 bp):
TGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCCTTATCGAAGCCGATGCCATGTCC
CAGACATGATCTTACACTAGCTCTCATCTTACG
Found at i:69483053 original size:149 final size:142
Alignment explanation
Indices: 69482784--69483206 Score: 473
Period size: 149 Copynumber: 2.9 Consensus size: 142
69482774 GGGTTAAGTT
* * *
69482784 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--CTTATCGAAGCCGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTA-CG--GCCGATTCCATGTC
* * *
69482847 CCAGACATGGTCTTACACTAGCTCTCATACTTACGTGCTGATTCCATGTCCCAGACATGGTCTTA
63 CCAGACATGGTCTTACACTAGCTCTCATA--TCCATGCTGATGCCATGTCCCAGACATGGTCTTA
*
69482912 CACTGGCTATCCTTATCGAA
126 CACTGGC-AT--GTATCGAA
*
69482932 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACTTACGTGCTGATTCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTTACG-GCCGATTCCATGTCC
* *
69482997 CAGACATGGTCTTACACTAGCTCTTGCATATCCATGCTTATGCCATGTCCCAGACATGATCTTAC
64 CAGACATGGTCTTACACTAGCTC-T-CATATCCATGCTGATGCCATGTCCCAGACATGGTCTTAC
* * *
69483062 ACTGACATGTCTCGTA
127 ACTGGCATGTATCGAA
* * *
69483078 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACATCTAAAGGCCGA-TGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATCTTACGGCCGATTCCATGTCCC
* * * * * * *
69483139 GGACAT-ATCTTACACTGGCACTCATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
65 AGACATGGTCTTACACTAGCTCTCATATCCATGCTGATGCCATGTCCCAGACATGGTCTTACACT
69483203 GGCA
130 GGCA
69483207 CACAAATTAC
Statistics
Matches: 241, Mismatches: 28, Indels: 22
0.83 0.10 0.08
Matches are distributed among these distances:
138 40 0.17
139 1 0.00
140 12 0.05
141 14 0.06
142 4 0.02
143 5 0.02
144 17 0.07
145 14 0.06
146 12 0.05
148 40 0.17
149 71 0.29
150 3 0.01
151 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTACGGCCGATTCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATATCCATGCTGATGCCATGTCCCAGACATGGTCTTACACTG
GCATGTATCGAA
Found at i:69483908 original size:12 final size:12
Alignment explanation
Indices: 69483891--69483915 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69483881 CGAAAATGTA
69483891 AAAATCATCAAG
1 AAAATCATCAAG
69483903 AAAATCATCAAG
1 AAAATCATCAAG
69483915 A
1 A
69483916 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:69488741 original size:15 final size:15
Alignment explanation
Indices: 69488722--69488761 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
69488712 ATGAGTCTTC
*
69488722 AAAAATAAATAGAAAT
1 AAAAATAAAGA-AAAT
*
69488738 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
69488753 AAAAATAAA
1 AAAAATAAA
69488762 ATGAGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Found at i:69489714 original size:37 final size:37
Alignment explanation
Indices: 69489671--69489745 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
69489661 TGTCTTAAAC
** *
69489671 GAGCGTCGTAGTGGTGCTTCATTGCTTCCTTGTATAG
1 GAGCGTCGTAGCAGTACTTCATTGCTTCCTTGTATAG
* *
69489708 GAGCGTCGTGGCAGTACTTCGTTGCTTCCTTGTATAG
1 GAGCGTCGTAGCAGTACTTCATTGCTTCCTTGTATAG
69489745 G
1 G
69489746 CATAAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.13, C:0.20, G:0.31, T:0.36
Consensus pattern (37 bp):
GAGCGTCGTAGCAGTACTTCATTGCTTCCTTGTATAG
Found at i:69491495 original size:48 final size:48
Alignment explanation
Indices: 69491424--69491520 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
69491414 TCTCAATGGC
69491424 TTCAATTTTAGATTTATCGACCTTAATCCCTTTACTAGAAATTTTATG
1 TTCAATTTTAGATTTATCGACCTTAATCCCTTTACTAGAAATTTTATG
69491472 TTCAATTTTAGATTTATCGACCTTAATCCCTTTACTAGAAATTTTATG
1 TTCAATTTTAGATTTATCGACCTTAATCCCTTTACTAGAAATTTTATG
69491520 T
1 T
69491521 CCTAACACAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.46
Consensus pattern (48 bp):
TTCAATTTTAGATTTATCGACCTTAATCCCTTTACTAGAAATTTTATG
Found at i:69495598 original size:82 final size:82
Alignment explanation
Indices: 69495461--69495625 Score: 267
Period size: 82 Copynumber: 2.0 Consensus size: 82
69495451 TCGATCTATG
** * *
69495461 GATTCCCTTATTAGGTTTCACCCTAATCTGGTAAAATTATGTCACCCTATCTCTAGGCGTGCAAT
1 GATTCCCTTATTAGGTTTCACCCTAATCCAGCAAAATTATGTCACCCTATCTCTAGGCGTGCAAC
*
69495526 CAACTCCGCTTAATTAT
66 CAACTCCGCTCAATTAT
* *
69495543 GATTCCTTTATTAGGTTTCACCCTAATCCAGCAAAATTATGTCACCCTATGTCTAGGCGTGCAAC
1 GATTCCCTTATTAGGTTTCACCCTAATCCAGCAAAATTATGTCACCCTATCTCTAGGCGTGCAAC
69495608 CAACTCCGCTCAATTAT
66 CAACTCCGCTCAATTAT
69495625 G
1 G
69495626 TTATATCTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 76 1.00
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (82 bp):
GATTCCCTTATTAGGTTTCACCCTAATCCAGCAAAATTATGTCACCCTATCTCTAGGCGTGCAAC
CAACTCCGCTCAATTAT
Found at i:69498638 original size:144 final size:144
Alignment explanation
Indices: 69498345--69498630 Score: 333
Period size: 144 Copynumber: 2.0 Consensus size: 144
69498335 AATAACCAGT
* * * *
69498345 CTGGGTGCAACTTTTGTCAGCTTGTCTGACCAGTTCTGGGCACACAATCATCGGTATAACCGACT
1 CTGGGCGCAACTTTTGTCAGCTTGTCTAACCAGTGCTGCGCACACAATCATCGGTATAACCGACT
* * ** ** *
69498410 AGCACTGGGTGCTAACATCATTGGTTTATCCAACTAGAGCTGAACTCACTATGGATTTTGTCGAT
66 AGCACTGGGTGCAAACATCATTAGTTTATCCAACTAGAGCTGAACTCACTATCAACATCGTCGAT
** * *
69498475 ATATTTGGCTAGCA
131 ATATCCGACTAACA
* * * *
69498489 CTGGGCGCAACTTTTTTCAGCTTGTCTAACTAGTGCTGCGCACACAGTCGTCGGTATAACCGACT
1 CTGGGCGCAACTTTTGTCAGCTTGTCTAACCAGTGCTGCGCACACAATCATCGGTATAACCGACT
* **
69498554 AGCACTGGGTGCAAACATCATTAGTTTATCCAACTAGAGTTGGGCTCAC-ATTCAACATCGTCGG
66 AGCACTGGGTGCAAACATCATTAGTTTATCCAACTAGAGCTGAACTCACTA-TCAACATCGTC-G
*
69498618 CTA-ATCCGACTAA
129 ATATATCCGACTAA
69498631 TGCTGGGCAC
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
143 1 0.01
144 113 0.97
145 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (144 bp):
CTGGGCGCAACTTTTGTCAGCTTGTCTAACCAGTGCTGCGCACACAATCATCGGTATAACCGACT
AGCACTGGGTGCAAACATCATTAGTTTATCCAACTAGAGCTGAACTCACTATCAACATCGTCGAT
ATATCCGACTAACA
Found at i:69499619 original size:42 final size:43
Alignment explanation
Indices: 69499572--69499670 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 43
69499562 CGTGTGGTTT
* * *
69499572 GGCCGTGTGACCCTA-CTCAGAAGGTCACACGGGCAAG-GACAC
1 GGCCGTGTGACCCCAGCTC-GAAGGTCACACGGCCAAGCCACAC
* * * *
69499614 GGCCGTGTGTCCCCAGTTCGAAGGTTACACGGCCTAGCCACAC
1 GGCCGTGTGACCCCAGCTCGAAGGTCACACGGCCAAGCCACAC
69499657 GGCCGTGTGACCCC
1 GGCCGTGTGACCCC
69499671 TGTAGTTAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.15
Consensus pattern (43 bp):
GGCCGTGTGACCCCAGCTCGAAGGTCACACGGCCAAGCCACAC
Found at i:69514365 original size:124 final size:125
Alignment explanation
Indices: 69514214--69514449 Score: 341
Period size: 124 Copynumber: 1.9 Consensus size: 125
69514204 ATTTGGACAA
* *** * *
69514214 TATTTGTTGAATGATTGTACCAAAAGATTCTATTGTAGTTTTTCAATTTTTTCAAATACTT-CAA
1 TATTTGTTGAATGATTATACCAAAAGATTCTATCACAGTTTTCCAATTTTTTCAAACACTTCCAA
* *
69514278 AACAAAATTTACAC-AGTTTACTTTAGCCCTTTACTTATATTTTACCCATTTCCCCCCCTT
66 AACAAAATTTACACTA-TTTACTTTAGCCCTTTACTTACATATTACCCATTTCCCCCCCTT
* *
69514338 TATTTGTTGAATGATTATACCAAAAGATTCTATCACAGTTTTCCAATTTTTTCAAGCAGTTCCAA
1 TATTTGTTGAATGATTATACCAAAAGATTCTATCACAGTTTTCCAATTTTTTCAAACACTTCCAA
**
69514403 AACAAAATTTACACTATTTACTTTATTCCTTTACTTACATATTACCC
66 AACAAAATTTACACTATTTACTTTAGCCCTTTACTTACATATTACCC
69514450 TTTTTTGTAT
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
124 53 0.54
125 44 0.45
126 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (125 bp):
TATTTGTTGAATGATTATACCAAAAGATTCTATCACAGTTTTCCAATTTTTTCAAACACTTCCAA
AACAAAATTTACACTATTTACTTTAGCCCTTTACTTACATATTACCCATTTCCCCCCCTT
Found at i:69518721 original size:18 final size:18
Alignment explanation
Indices: 69518698--69518737 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
69518688 AAATGACAAT
* *
69518698 GAAGATATAGTTGAGAAA
1 GAAGATACAGTCGAGAAA
*
69518716 GAAGATGCAGTCGAGAAA
1 GAAGATACAGTCGAGAAA
69518734 GAAG
1 GAAG
69518738 GGAGAATAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.33, T:0.15
Consensus pattern (18 bp):
GAAGATACAGTCGAGAAA
Found at i:69521292 original size:45 final size:44
Alignment explanation
Indices: 69521190--69521304 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 44
69521180 TGGCTTGAAG
* * *
69521190 GAAATGATTAAGACCGTAGTTGAAAGACACTATGGCACTATACC
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGACACTATACC
* * *
69521234 GAAAATAAATAAGACTATAGTTGAAAGACACTATGACA-TCGTACC
1 G-AAATGAATAAGACCATAGTTGAAAGACACTATGACACT-ATACC
* *
69521279 AGAAATGAGTAAGACCATAGCTGAAA
1 -GAAATGAATAAGACCATAGTTGAAA
69521305 AATGTTATGG
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
44 2 0.03
45 55 0.95
46 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (44 bp):
GAAATGAATAAGACCATAGTTGAAAGACACTATGACACTATACC
Found at i:69521334 original size:45 final size:45
Alignment explanation
Indices: 69521286--69521454 Score: 196
Period size: 45 Copynumber: 3.8 Consensus size: 45
69521276 ACCAGAAATG
* * *
69521286 AGTAAGACCATAGCTGAAAAATGTTATGGCATCAAAATTCTATCG
1 AGTAAGACCATAGCTGAAAAACGTTATGGCATCAAGATTCTATCA
* * * * *
69521331 AGTAAGACCATAGCTGAAAGACGTTATGACATCACGATTTTATTA
1 AGTAAGACCATAGCTGAAAAACGTTATGGCATCAAGATTCTATCA
* * * *
69521376 AGTAAGACGATAGCTGAAAGACGTTACGGCATCATGATTCTATCA
1 AGTAAGACCATAGCTGAAAAACGTTATGGCATCAAGATTCTATCA
* *
69521421 AGAAAGACCATAGCT-AAAAGATGTTATGGCATCA
1 AGTAAGACCATAGCTGAAAA-ACGTTATGGCATCA
69521455 CGAATCAATG
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 3 0.03
45 101 0.97
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (45 bp):
AGTAAGACCATAGCTGAAAAACGTTATGGCATCAAGATTCTATCA
Found at i:69521380 original size:90 final size:90
Alignment explanation
Indices: 69521286--69521457 Score: 245
Period size: 90 Copynumber: 1.9 Consensus size: 90
69521276 ACCAGAAATG
* * * * *
69521286 AGTAAGACCATAGCTGAAAAATGTTATGGCATCAAAATTCTATCGAGTAAGACCATAGCTGAAAG
1 AGTAAGACCATAGCTGAAAAACGTTACGGCATCAAAATTCTATCAAGAAAGACCATAGCTAAAAG
69521351 ACGTTATGACATCACGATTTTATTA
66 ACGTTATGACATCACGATTTTATTA
* * **
69521376 AGTAAGACGATAGCTGAAAGACGTTACGGCATCATGATTCTATCAAGAAAGACCATAGCTAAAAG
1 AGTAAGACCATAGCTGAAAAACGTTACGGCATCAAAATTCTATCAAGAAAGACCATAGCTAAAAG
* *
69521441 ATGTTATGGCATCACGA
66 ACGTTATGACATCACGA
69521458 ATCAATGAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
90 71 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (90 bp):
AGTAAGACCATAGCTGAAAAACGTTACGGCATCAAAATTCTATCAAGAAAGACCATAGCTAAAAG
ACGTTATGACATCACGATTTTATTA
Found at i:69521484 original size:90 final size:89
Alignment explanation
Indices: 69521289--69521487 Score: 218
Period size: 90 Copynumber: 2.2 Consensus size: 89
69521279 AGAAATGAGT
* * * * * *
69521289 AAGACCATAGCTGAAAAATGTTATGGCATCAAAATTCTATCGAGTAAGACCATAGCTGAAAGACG
1 AAGA-CATAGCTGAAAGACGTTACGGCATCAAAATTCTATCAAGAAAGACCATAGCTAAAAGACG
* ** * **
69521354 TTATGACATCACGATTTTATTAAGT
65 TTATGACATCACGAATCAATGAAAC
** *
69521379 AAGACGATAGCTGAAAGACGTTACGGCATCATGATTCTATCAAGAAAGACCATAGCTAAAAGATG
1 AAGAC-ATAGCTGAAAGACGTTACGGCATCAAAATTCTATCAAGAAAGACCATAGCTAAAAGACG
*
69521444 TTATGGCATCACGAATCAATGAAAC
65 TTATGACATCACGAATCAATGAAAC
*
69521469 AAGATCATAGTTGAAAGAC
1 AAGA-CATAGCTGAAAGAC
69521488 ACTATAGCAA
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
89 1 0.01
90 88 0.98
91 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (89 bp):
AAGACATAGCTGAAAGACGTTACGGCATCAAAATTCTATCAAGAAAGACCATAGCTAAAAGACGT
TATGACATCACGAATCAATGAAAC
Found at i:69521533 original size:46 final size:45
Alignment explanation
Indices: 69521469--69521583 Score: 133
Period size: 45 Copynumber: 2.5 Consensus size: 45
69521459 TCAATGAAAC
* * * *
69521469 AAGATCATAGTTGAAAGACACTATAGCAACACGA-CAGAAAATGAAT
1 AAGACCATGGTTGAAAGACACTATAGCAACAAGATCAG--AATAAAT
* * * *
69521515 AAGACCATGGTTTAAAGACACTATGGCATCAAGATTAGAATAAAT
1 AAGACCATGGTTGAAAGACACTATAGCAACAAGATCAGAATAAAT
69521560 AAGACCATGGTTGAAAGACACTAT
1 AAGACCATGGTTGAAAGACACTAT
69521584 GGCACTCTCC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
45 29 0.49
46 28 0.47
47 2 0.03
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (45 bp):
AAGACCATGGTTGAAAGACACTATAGCAACAAGATCAGAATAAAT
Found at i:69524526 original size:17 final size:17
Alignment explanation
Indices: 69524500--69524589 Score: 67
Period size: 17 Copynumber: 5.2 Consensus size: 17
69524490 ATCGCAAGAT
* *
69524500 TGCGAACTCACCAAATG
1 TGCGAGCTCACCAAATC
*
69524517 TGCGAGCTCACCCAAAAC
1 TGCGAGCTCA-CCAAATC
* *
69524535 TACGAGCTCATCAAGA-C
1 TGCGAGCTCACCAA-ATC
* *
69524552 TGCGAGCTCTCC-AATAA
1 TGCGAGCTCACCAAAT-C
*
69524569 TGCGAGCTCACCAAAGC
1 TGCGAGCTCACCAAATC
69524586 TGCG
1 TGCG
69524590 TAGTCTGGGA
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
15 1 0.02
16 1 0.02
17 37 0.66
18 17 0.30
ACGTcount: A:0.31, C:0.32, G:0.20, T:0.17
Consensus pattern (17 bp):
TGCGAGCTCACCAAATC
Found at i:69525392 original size:18 final size:18
Alignment explanation
Indices: 69525369--69525404 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
69525359 GTTGTAAAGT
69525369 TTTATTTTTATTTA-TTTA
1 TTTA-TTTTATTTAGTTTA
69525387 TTTATTTTATTTAGTTTA
1 TTTATTTTATTTAGTTTA
69525405 AATTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTATTTTATTTAGTTTA
Found at i:69529269 original size:4 final size:4
Alignment explanation
Indices: 69529262--69529300 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
69529252 TCATCTACAT
* *
69529262 ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC GTAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
69529301 TATGTATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.46, C:0.23, G:0.05, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:69529329 original size:16 final size:16
Alignment explanation
Indices: 69529263--69529329 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 16
69529253 CATCTACATA
* *
69529263 TACATACATACATACA
1 TACATATATACATACG
* *
69529279 TACATACATACGTACG
1 TACATATATACATACG
** *
69529295 TACATATATGTATATG
1 TACATATATACATACG
*
69529311 TACATATGTACATACG
1 TACATATATACATACG
69529327 TAC
1 TAC
69529330 GTACATATAC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (16 bp):
TACATATATACATACG
Found at i:69529337 original size:28 final size:29
Alignment explanation
Indices: 69529306--69529371 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
69529296 ACATATATGT
69529306 ATATGTACATATGTACATACGTACGTAC-
1 ATATGTACATATGTACATACGTACGTACG
** * *
69529334 ATATACATATATGTACATACGTATGTACG
1 ATATGTACATATGTACATACGTACGTACG
69529363 TATATGTAC
1 -ATATGTAC
69529372 GTACGTATGT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
28 24 0.83
30 5 0.17
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (29 bp):
ATATGTACATATGTACATACGTACGTACG
Found at i:69529351 original size:16 final size:16
Alignment explanation
Indices: 69529294--69529352 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
69529284 ACATACGTAC
**
69529294 GTACATATATGTATAT
1 GTACATATACATATAT
*
69529310 GTACATATGTACATACGTAC
1 GTACATA--TACATA--TAT
69529330 GTACATATACATATAT
1 GTACATATACATATAT
69529346 GTACATA
1 GTACATA
69529353 CGTATGTACG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 16 0.46
18 10 0.29
20 9 0.26
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.36
Consensus pattern (16 bp):
GTACATATACATATAT
Found at i:69529364 original size:36 final size:36
Alignment explanation
Indices: 69529257--69529356 Score: 128
Period size: 36 Copynumber: 2.7 Consensus size: 36
69529247 ATATATCATC
** *
69529257 TACATATACATACATACATACATACATACATACGTACG
1 TACATATACAT--ATATGTACATACGTACATACGTACG
** *
69529295 TACATATATGTATATGTACATATGTACATACGTACG
1 TACATATACATATATGTACATACGTACATACGTACG
69529331 TACATATACATATATGTACATACGTA
1 TACATATACATATATGTACATACGTA
69529357 TGTACGTATA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 44 0.83
38 9 0.17
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (36 bp):
TACATATACATATATGTACATACGTACATACGTACG
Found at i:69529369 original size:22 final size:22
Alignment explanation
Indices: 69529341--69529387 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
69529331 TACATATACA
69529341 TATATGTACATACGTATGTACG
1 TATATGTACATACGTATGTACG
* *
69529363 TATATGTACGTACGTATGTATG
1 TATATGTACATACGTATGTACG
69529385 TAT
1 TAT
69529388 GTATGTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (22 bp):
TATATGTACATACGTATGTACG
Found at i:69529383 original size:4 final size:4
Alignment explanation
Indices: 69529365--69529399 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
69529355 TATGTACGTA
* *
69529365 TATG TACG TACG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
69529400 ATAGGAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.46
Consensus pattern (4 bp):
TATG
Found at i:69537593 original size:26 final size:26
Alignment explanation
Indices: 69537544--69537594 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
69537534 CACTTACTGC
* *
69537544 TACTGGCAGCTACGCTGCGTTATTGT
1 TACTGGCAGCTACGCTACGATATTGT
**
69537570 TACTGGCAGCTTTGCTACGATATTG
1 TACTGGCAGCTACGCTACGATATTG
69537595 GTGTGCTGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (26 bp):
TACTGGCAGCTACGCTACGATATTGT
Found at i:69541699 original size:21 final size:21
Alignment explanation
Indices: 69541670--69541839 Score: 114
Period size: 21 Copynumber: 8.1 Consensus size: 21
69541660 TAGTGTTTTA
* * *
69541670 CTTTCTGTTTAGCTTTTTCGAG
1 CTTT-TGTTCAGCTCTTACGAG
69541692 CTTTTGTTCAGCTCTTACGAG
1 CTTTTGTTCAGCTCTTACGAG
* * *
69541713 CTTCTGTTCAACTCTTACAAG
1 CTTTTGTTCAGCTCTTACGAG
* * * * *
69541734 CATCTATTCAACTCTTATGAG
1 CTTTTGTTCAGCTCTTACGAG
* * *
69541755 ATTCTGTTAAGCTCTTACGAG
1 CTTTTGTTCAGCTCTTACGAG
* * **
69541776 CTTCTGTTCAACTCTTATAAG
1 CTTTTGTTCAGCTCTTACGAG
*
69541797 -TTTCTGTTCAGCTCTTATGAG
1 CTTT-TGTTCAGCTCTTACGAG
69541818 -TTTCTGTTCAGCT-TT-CGAG
1 CTTT-TGTTCAGCTCTTACGAG
69541837 CTT
1 CTT
69541840 CTTTTGGCAT
Statistics
Matches: 121, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
19 3 0.02
20 6 0.05
21 108 0.89
22 4 0.03
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.44
Consensus pattern (21 bp):
CTTTTGTTCAGCTCTTACGAG
Found at i:69541778 original size:63 final size:63
Alignment explanation
Indices: 69541696--69541841 Score: 215
Period size: 63 Copynumber: 2.3 Consensus size: 63
69541686 TTCGAGCTTT
69541696 TGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTACAAGCATCTATTCAACTCTTATGAGATTC
1 TGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTACAAGCATCTATTCAACTCTTATGAGATTC
* * ** * * *
69541759 TGTTAAGCTCTTACGAGCTTCTGTTCAACTCTTATAAGTTTCTGTTCAGCTCTTATGAGTTTC
1 TGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTACAAGCATCTATTCAACTCTTATGAGATTC
69541822 TGTTCAGCT-TT-CGAGCTTCT
1 TGTTCAGCTCTTACGAGCTTCT
69541842 TTTGGCATAT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
61 9 0.12
62 2 0.03
63 64 0.85
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (63 bp):
TGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTACAAGCATCTATTCAACTCTTATGAGATTC
Found at i:69541823 original size:42 final size:42
Alignment explanation
Indices: 69541672--69541827 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
69541662 GTGTTTTACT
* * * * * ** *
69541672 TTCTGTTTAGCTTTTTCGAGCTTTTGTTCAGCTCTTACGAGC
1 TTCTGTTAAGCTCTTACGAGCTTCTGTTCAACTCTTATAAGA
* * * *
69541714 TTCTGTTCAA-CTCTTACAAGCATCTATTCAACTCTTATGAGA
1 TTCTGTT-AAGCTCTTACGAGCTTCTGTTCAACTCTTATAAGA
*
69541756 TTCTGTTAAGCTCTTACGAGCTTCTGTTCAACTCTTATAAGT
1 TTCTGTTAAGCTCTTACGAGCTTCTGTTCAACTCTTATAAGA
* * *
69541798 TTCTGTTCAGCTCTTATGAGTTTCTGTTCA
1 TTCTGTTAAGCTCTTACGAGCTTCTGTTCA
69541828 GCTTTCGAGC
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 2 0.02
42 91 0.97
43 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (42 bp):
TTCTGTTAAGCTCTTACGAGCTTCTGTTCAACTCTTATAAGA
Found at i:69542113 original size:25 final size:25
Alignment explanation
Indices: 69542074--69542123 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
69542064 ATGATGGCAC
**
69542074 ATGATATATTGATATATTGAAATGG
1 ATGATATATTGATATAAAGAAATGG
69542099 ATGATATA-TGTATATAAAGAAATGG
1 ATGATATATTG-ATATAAAGAAATGG
69542124 TAGGAGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (25 bp):
ATGATATATTGATATAAAGAAATGG
Found at i:69558810 original size:135 final size:135
Alignment explanation
Indices: 69558431--69558904 Score: 500
Period size: 135 Copynumber: 3.6 Consensus size: 135
69558421 AATAGAGTTA
* * *
69558431 CAATCGTAAATCAG-CGAACTCTTAATGAACTGTTCATGATAAC--AAATCAATGAACTGAAATT
1 CAATCGTAAAT-AGACAAACTCTTAATGAATTGTTCATGAT-TCGTAAATCAATGAACTGAAATT
* * * * *
69558493 GTGATCATAAATCAATGAGCTTT-AAAATGACAGTTGTGATCGTAAATCAATGGACTGTTTAGGT
64 GTGATCGTAAATTAACGAGCTTTAAAAATGACAGTTGTGATCGTAAATCAATGAACTGTTTAAGT
69558557 GGAGTTA-
129 GGAG-TAG
* * *
69558564 CAATTGTAAATCGACAAACTCTTAATGAATTGTTCATGA-TCGTAAATCAATGAACTGAAACTGT
1 CAATCGTAAATAGACAAACTCTTAATGAATTGTTCATGATTCGTAAATCAATGAACTGAAATTGT
* * * * * * *
69558628 GATCGTAAATTACCAAGCATAAAAAATGACATTTGTAATCGTAAATCAACGAACTGTTTAAGTGG
66 GATCGTAAATTAACGAGCTTTAAAAATGACAGTTGTGATCGTAAATCAATGAACTGTTTAAGTGG
69558693 AGTAG
131 AGTAG
* * ** * *
69558698 CAGTCATAAATTAG-TGAACTCTTAATGAATTGTTCATCATTCGTAAATCAATGAACTGAAGTTG
1 CAATCGTAAA-TAGACAAACTCTTAATGAATTGTTCATGATTCGTAAATCAATGAACTGAAATTG
* * * * * * * *
69558762 TGGTCGTAAATTAGCGAGCTTTAAAAATGAAAGTTATGATAGTGAATCAGTGAACTATTTAAGTG
65 TGATCGTAAATTAACGAGCTTTAAAAATGACAGTTGTGATCGTAAATCAATGAACTGTTTAAGTG
*
69558827 GAGTCG
130 GAGTAG
* * * * *
69558833 CAATCGTAGATCGACAAAATCTTAATGAATTGTTCAT-AATCGTAAATCAAT--ACTGAAGTTGT
1 CAATCGTAAATAGACAAACTCTTAATGAATTGTTCATGATTCGTAAATCAATGAACTGAAATTGT
69558895 GATCGTAAAT
66 GATCGTAAAT
69558905 CAACAAACTG
Statistics
Matches: 282, Mismatches: 51, Indels: 17
0.81 0.15 0.05
Matches are distributed among these distances:
131 1 0.00
132 21 0.07
133 69 0.24
134 84 0.30
135 107 0.38
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (135 bp):
CAATCGTAAATAGACAAACTCTTAATGAATTGTTCATGATTCGTAAATCAATGAACTGAAATTGT
GATCGTAAATTAACGAGCTTTAAAAATGACAGTTGTGATCGTAAATCAATGAACTGTTTAAGTGG
AGTAG
Found at i:69559015 original size:96 final size:96
Alignment explanation
Indices: 69558822--69559001 Score: 272
Period size: 96 Copynumber: 1.9 Consensus size: 96
69558812 TGAACTATTT
* *
69558822 AAGTGGAGTCGCAATCGTAGATCGACAAAATCTTAATGAATTGTTCATAATCGTAAATCAATACT
1 AAGTGGAGTCGCAATCGTAAATCGACAAAATCTTAATGAATTGCTCATAATCGTAAATCAATACT
*
69558887 GAAGTTGTGATCGTAAATCAACAAACTGTTA
66 GAAGTTATGATCGTAAATCAACAAACTGTTA
* * * *
69558918 AAGTGGAGTCGCAATTGTAAATTGACGAAATCTTAATGAATTGCTCATGATCGTAAA-CAATAAA
1 AAGTGGAGTCGCAATCGTAAATCGACAAAATCTTAATGAATTGCTCATAATCGTAAATCAAT--A
69558982 CTGAAGTTATGATCGTAAAT
64 CTGAAGTTATGATCGTAAAT
69559002 TAGAGATCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
95 4 0.05
96 51 0.68
97 20 0.27
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (96 bp):
AAGTGGAGTCGCAATCGTAAATCGACAAAATCTTAATGAATTGCTCATAATCGTAAATCAATACT
GAAGTTATGATCGTAAATCAACAAACTGTTA
Found at i:69561733 original size:6 final size:6
Alignment explanation
Indices: 69561722--69561748 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
69561712 CCGTGTATCT
69561722 GTCCGA GTCCGA GTCCGA GTCCGA GTC
1 GTCCGA GTCCGA GTCCGA GTCCGA GTC
69561749 ATGCTAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (6 bp):
GTCCGA
Found at i:69565678 original size:18 final size:18
Alignment explanation
Indices: 69565640--69565674 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69565630 GTGTGGTTCA
*
69565640 CCCGTGTGGACCCACACG
1 CCCGTGTGGACCAACACG
69565658 CCCGTGTGG-CCAACACG
1 CCCGTGTGGACCAACACG
69565675 GCCCAGTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.17, C:0.43, G:0.29, T:0.11
Consensus pattern (18 bp):
CCCGTGTGGACCAACACG
Found at i:69565888 original size:85 final size:85
Alignment explanation
Indices: 69565734--69565894 Score: 268
Period size: 85 Copynumber: 1.9 Consensus size: 85
69565724 CACAACCGTG
*
69565734 TCCTTCGCGTATGGCCTAGCCTCGTCATTCACACGGCTATGTACTACCACACGACCTACCACACA
1 TCCTTCGCGTATGGCCTAGCCTCGTCATTCACACGGCCATGTACTACCACACGACCTACCACACA
*
69565799 GATGACCACACGCCCGTGTA
66 GATGACAACACGCCCGTGTA
* * **
69565819 TCCTTTGCGTATGGCCTAGCCTCGTCATTCACACGGCCGTGTACTACCACACGACCTACCACATG
1 TCCTTCGCGTATGGCCTAGCCTCGTCATTCACACGGCCATGTACTACCACACGACCTACCACACA
69565884 GATGACAACAC
66 GATGACAACAC
69565895 ACCCATGTGG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.24, C:0.37, G:0.18, T:0.22
Consensus pattern (85 bp):
TCCTTCGCGTATGGCCTAGCCTCGTCATTCACACGGCCATGTACTACCACACGACCTACCACACA
GATGACAACACGCCCGTGTA
Found at i:69571568 original size:28 final size:28
Alignment explanation
Indices: 69571515--69571569 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
69571505 GTTTTCAGTT
* *
69571515 TACACTACCTAGAGTGTTTTCCGTATAA
1 TACACTACCTAAAGTGTTTTCAGTATAA
69571543 TACACTACCTAAAGTAGTTTT-AGTATA
1 TACACTACCTAAAGT-GTTTTCAGTATA
69571570 TTCTAATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (28 bp):
TACACTACCTAAAGTGTTTTCAGTATAA
Found at i:69574095 original size:10 final size:10
Alignment explanation
Indices: 69574080--69574107 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
69574070 AAGCTAAAGC
69574080 TTTGGATTAG
1 TTTGGATTAG
69574090 TTTGGATTAG
1 TTTGGATTAG
69574100 TTTGGATT
1 TTTGGATT
69574108 CCACTTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.54
Consensus pattern (10 bp):
TTTGGATTAG
Found at i:69596599 original size:25 final size:25
Alignment explanation
Indices: 69596571--69596620 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
69596561 TCCATGGAGA
69596571 AAGGTCTTGAGATTTGGTCGAAAGG
1 AAGGTCTTGAGATTTGGTCGAAAGG
69596596 AAGGTCTTGAGATTTGGTCGAAAGG
1 AAGGTCTTGAGATTTGGTCGAAAGG
69596621 GCAAACTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.36, T:0.28
Consensus pattern (25 bp):
AAGGTCTTGAGATTTGGTCGAAAGG
Found at i:69597798 original size:52 final size:52
Alignment explanation
Indices: 69597741--69597842 Score: 168
Period size: 52 Copynumber: 2.0 Consensus size: 52
69597731 ATGTGAAATG
* * *
69597741 AAAGAAAATGTGGACTACTATAAGCAAGAAAAATATTTGAGTAGGCTTGGGT
1 AAAGAAAATGTGGACTACTATAAGCAAGAAAAATACTCGACTAGGCTTGGGT
*
69597793 AAAGAAAATGTGGACTGCTATAAGCAAGAAAAATACTCGACTAGGCTTGG
1 AAAGAAAATGTGGACTACTATAAGCAAGAAAAATACTCGACTAGGCTTGG
69597843 CTAACTTAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.23
Consensus pattern (52 bp):
AAAGAAAATGTGGACTACTATAAGCAAGAAAAATACTCGACTAGGCTTGGGT
Found at i:69603183 original size:26 final size:26
Alignment explanation
Indices: 69603153--69603208 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
69603143 CTTCTTGATA
69603153 GGCTCGTTGTGAGCTTTCCGATTA-AT
1 GGCTCGTTGTGAGC-TTCCGATTATAT
* *
69603179 GGCTCTTTGTGAGCTTCCTATTATAT
1 GGCTCGTTGTGAGCTTCCGATTATAT
69603205 GGCT
1 GGCT
69603209 TGAAAGAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.41
Consensus pattern (26 bp):
GGCTCGTTGTGAGCTTCCGATTATAT
Found at i:69611248 original size:19 final size:19
Alignment explanation
Indices: 69611224--69611261 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
69611214 ACCTATCAGA
69611224 AGAAAAT-AAATGAAAAATT
1 AGAAAATAAAAT-AAAAATT
69611243 AGAAAATAAAATAAAAATT
1 AGAAAATAAAATAAAAATT
69611262 TAAGTTGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (19 bp):
AGAAAATAAAATAAAAATT
Found at i:69620637 original size:21 final size:22
Alignment explanation
Indices: 69620600--69620654 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
69620590 GGGAGCATCT
* *
69620600 GCCATCAATG-TTCTGTCTCAG
1 GCCATCAATGCATCTGTCACAG
69620621 GCCATCAATGCAT-TGTCACAG
1 GCCATCAATGCATCTGTCACAG
*
69620642 GCCTTTCAATGCA
1 GCC-ATCAATGCA
69620655 CCACGACCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 20 0.69
22 9 0.31
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (22 bp):
GCCATCAATGCATCTGTCACAG
Found at i:69621893 original size:367 final size:367
Alignment explanation
Indices: 69621220--69624060 Score: 5592
Period size: 367 Copynumber: 7.7 Consensus size: 367
69621210 GATGAACGGA
69621220 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69621285 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69621350 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69621415 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69621480 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
69621545 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69621587 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69621652 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69621717 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69621782 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69621847 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
69621912 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69621954 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69622019 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69622084 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69622149 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69622214 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
69622279 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69622321 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69622386 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69622451 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69622516 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69622581 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
69622646 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69622688 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69622753 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69622818 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69622883 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69622948 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
69623013 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69623055 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69623120 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69623185 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69623250 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69623315 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
69623380 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69623422 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69623487 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
69623552 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
69623617 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
* * *
69623682 AATAATATCATTTGAACAAGTCAGAATACATTCATACACCAATTAGGACATGTTCACACGCACCA
261 AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
* * *
69623747 TAACCTATCATAGAAAAATTTGACATACTAAGTAACCTTCAT
326 TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
69623789 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
1 GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
69623854 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
66 TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
* * *
69623919 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCACATTAGTACATTTTCATAA
131 ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
*
69623984 AGAAAATATAGCATGCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
196 AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
69624049 AATAATATCATT
261 AATAATATCATT
69624061 AGTCCATGAG
Statistics
Matches: 2464, Mismatches: 10, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
367 2464 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (367 bp):
GCTAGCAGCCATACTTTTACTTCAAGAAATCATTAGTGAACATAACAAATCATCATCTCAAGGTT
TTCTAAGGATTTTAAATGTCCATTTGGAATCATTTGGTCACTTTAAACATGCTCAAATTATCAGA
ATATTGTTTCAATCCTATTACCACTTTTTAACCAATTTACATGCCATATTATTACATATTCATAA
AGAAAATATAGCATCCATTATCAATTCATTGTCAAGCATCAAAATATCCACAATCATAGTCCAAA
AATAATATCATTTGAACAAGTCAGAATACATTCATACATCAATTAGGAAATGTTCACATGCACCA
TAACCTATCATAGCAAAATTTGACGTACTAAATAACCTTCAT
Found at i:69630128 original size:284 final size:284
Alignment explanation
Indices: 69629618--69630186 Score: 1138
Period size: 284 Copynumber: 2.0 Consensus size: 284
69629608 GACCATTGGT
69629618 TAATTTTTTGGACAAAAATAGACATGAAATGGGTGAAATAGAATATTTTTAAGTTAGGGGCACTT
1 TAATTTTTTGGACAAAAATAGACATGAAATGGGTGAAATAGAATATTTTTAAGTTAGGGGCACTT
69629683 CGGTCATTTAGCAATTAAATGAATTACAAAACAAAATTAAAAGCCAAATTTTATCCATCTTCAAC
66 CGGTCATTTAGCAATTAAATGAATTACAAAACAAAATTAAAAGCCAAATTTTATCCATCTTCAAC
69629748 CCCTTGGTCGAAACTTGCATGGAGAAACCATGTCTAGGGTTTTCAAGCTTCCAAGCTCGATTGTA
131 CCCTTGGTCGAAACTTGCATGGAGAAACCATGTCTAGGGTTTTCAAGCTTCCAAGCTCGATTGTA
69629813 AGTCCGTTCTAGCCCCGTTTTTAATGATTTTTTATGTTTTTAAAATCCTCGTAACAAGATCTATC
196 AGTCCGTTCTAGCCCCGTTTTTAATGATTTTTTATGTTTTTAAAATCCTCGTAACAAGATCTATC
69629878 TATTTCTACCATTTATTTGAGTTA
261 TATTTCTACCATTTATTTGAGTTA
69629902 TAATTTTTTGGACAAAAATAGACATGAAATGGGTGAAATAGAATATTTTTAAGTTAGGGGCACTT
1 TAATTTTTTGGACAAAAATAGACATGAAATGGGTGAAATAGAATATTTTTAAGTTAGGGGCACTT
69629967 CGGTCATTTAGCAATTAAATGAATTACAAAACAAAATTAAAAGCCAAATTTTATCCATCTTCAAC
66 CGGTCATTTAGCAATTAAATGAATTACAAAACAAAATTAAAAGCCAAATTTTATCCATCTTCAAC
69630032 CCCTTGGTCGAAACTTGCATGGAGAAACCATGTCTAGGGTTTTCAAGCTTCCAAGCTCGATTGTA
131 CCCTTGGTCGAAACTTGCATGGAGAAACCATGTCTAGGGTTTTCAAGCTTCCAAGCTCGATTGTA
69630097 AGTCCGTTCTAGCCCCGTTTTTAATGATTTTTTATGTTTTTAAAATCCTCGTAACAAGATCTATC
196 AGTCCGTTCTAGCCCCGTTTTTAATGATTTTTTATGTTTTTAAAATCCTCGTAACAAGATCTATC
69630162 TATTTCTACCATTTATTTGAGTTA
261 TATTTCTACCATTTATTTGAGTTA
69630186 T
1 T
69630187 TATGAAGGTC
Statistics
Matches: 285, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
284 285 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (284 bp):
TAATTTTTTGGACAAAAATAGACATGAAATGGGTGAAATAGAATATTTTTAAGTTAGGGGCACTT
CGGTCATTTAGCAATTAAATGAATTACAAAACAAAATTAAAAGCCAAATTTTATCCATCTTCAAC
CCCTTGGTCGAAACTTGCATGGAGAAACCATGTCTAGGGTTTTCAAGCTTCCAAGCTCGATTGTA
AGTCCGTTCTAGCCCCGTTTTTAATGATTTTTTATGTTTTTAAAATCCTCGTAACAAGATCTATC
TATTTCTACCATTTATTTGAGTTA
Found at i:69633022 original size:19 final size:19
Alignment explanation
Indices: 69632995--69633037 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
69632985 TTTAAAAGTT
*
69632995 GAAAATTTTCTAAGTTTTC
1 GAAATTTTTCTAAGTTTTC
* *
69633014 GAAATTTTTTTATGTTTTC
1 GAAATTTTTCTAAGTTTTC
69633033 -AAATT
1 GAAATT
69633038 GGTCCCGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.53
Consensus pattern (19 bp):
GAAATTTTTCTAAGTTTTC
Found at i:69634563 original size:41 final size:41
Alignment explanation
Indices: 69634516--69634645 Score: 190
Period size: 41 Copynumber: 3.2 Consensus size: 41
69634506 GCGTTTGAAA
*
69634516 CAAAACGCTGCTAAAAACTGAGCAATAGTGGCGTTTTTATC
1 CAAAACGCTGCTAAAAACTGAGAAATAGTGGCGTTTTTATC
* * *
69634557 CAAAACGCTGCTAAAAACTGAGTAATAGTGGCATTTTCATC
1 CAAAACGCTGCTAAAAACTGAGAAATAGTGGCGTTTTTATC
* * *
69634598 CAAAACGCCGCAAAAAACTGAGAAATAGTGGCG-TTTTATT
1 CAAAACGCTGCTAAAAACTGAGAAATAGTGGCGTTTTTATC
69634638 CAAAACGC
1 CAAAACGC
69634646 CGCAAAACGC
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 13 0.16
41 67 0.84
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (41 bp):
CAAAACGCTGCTAAAAACTGAGAAATAGTGGCGTTTTTATC
Found at i:69634652 original size:50 final size:51
Alignment explanation
Indices: 69634598--69634703 Score: 160
Period size: 50 Copynumber: 2.1 Consensus size: 51
69634588 CATTTTCATC
** *
69634598 CAAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTA-TTCAAAACGCCG
1 CAAAACGCCGCAAAAAACTGAGAAATAGTGGCACTTTAGTTCAAAACGCCA
* *
69634648 CAAAACGCCGCAAAAAACTGAGATATAGTGGCACTTTAGTTCCAAACGCCA
1 CAAAACGCCGCAAAAAACTGAGAAATAGTGGCACTTTAGTTCAAAACGCCA
69634699 CAAAA
1 CAAAA
69634704 GGTTGAGCTA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 35 0.70
51 15 0.30
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.17
Consensus pattern (51 bp):
CAAAACGCCGCAAAAAACTGAGAAATAGTGGCACTTTAGTTCAAAACGCCA
Found at i:69634653 original size:10 final size:10
Alignment explanation
Indices: 69634638--69634662 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69634628 GCGTTTTATT
69634638 CAAAACGCCG
1 CAAAACGCCG
69634648 CAAAACGCCG
1 CAAAACGCCG
69634658 CAAAA
1 CAAAA
69634663 AACTGAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.36, G:0.16, T:0.00
Consensus pattern (10 bp):
CAAAACGCCG
Found at i:69634695 original size:91 final size:91
Alignment explanation
Indices: 69634557--69634739 Score: 212
Period size: 91 Copynumber: 2.0 Consensus size: 91
69634547 CGTTTTTATC
* * * *
69634557 CAAAACGCTGCTAAAAACTGAGTAATAGTGGCATTTTCATCCAAAACGCCGCAAAAAACTGAGAA
1 CAAAACGCCGCAAAAAACTGAGTAATAGTGGCACTTTCATCCAAAACGCCACAAAAAACTGAGAA
*
69634622 ATAGTGGCGTTTTAT-TCAAAACGCCG
66 ATAGTGGCGTTTT-TGTAAAAACGCCG
***
69634648 CAAAACGCCGCAAAAAACTGAG-ATATAGTGGCACTTT-AGTTCC-AAACGCCACAAAAGGTTGA
1 CAAAACGCCGCAAAAAACTGAGTA-ATAGTGGCACTTTCA--TCCAAAACGCCACAAAAAACTGA
**
69634710 GCTATAGTGGCGTTTTTGTAAAAACGCCG
63 GAAATAGTGGCGTTTTTGTAAAAACGCCG
69634739 C
1 C
69634740 TAATATTTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
90 3 0.04
91 72 0.92
92 3 0.04
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (91 bp):
CAAAACGCCGCAAAAAACTGAGTAATAGTGGCACTTTCATCCAAAACGCCACAAAAAACTGAGAA
ATAGTGGCGTTTTTGTAAAAACGCCG
Found at i:69636642 original size:20 final size:20
Alignment explanation
Indices: 69636597--69636648 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
69636587 CCCCACCCAA
*
69636597 ATTTCCCCAAATCCCTAACT
1 ATTTCCCCAAATCCCTAAAT
*
69636617 -TTTCCCCTAATCCCTAAAT
1 ATTTCCCCAAATCCCTAAAT
69636636 ATTTCCCCAAATC
1 ATTTCCCCAAATC
69636649 AAAATCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.29, C:0.38, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTCCCCAAATCCCTAAAT
Found at i:69639925 original size:131 final size:131
Alignment explanation
Indices: 69639675--69639936 Score: 420
Period size: 130 Copynumber: 2.0 Consensus size: 131
69639665 CTATATTGTA
* * * * *
69639675 GGAAGCCTCGTCTGGTCAAAAAGTAGGATGCCTTCAGCTTTTTGACATTACGCATAGGAAAAAAT
1 GGAAGCCTCATCTGGTCAAAAAGTAGGACGCCTTCAACTTTTTGACATTACGCACAGGAAAAAAG
*
69639740 ATGGAACTCCGATGACATCTGAGGCTGCAGAAATTATGGTATATTTACTTAAT-AAAATTTGATT
66 ATGGAACTCCGATGACATCTGAGGCTGCAGAAATTATGGTATATTTACTAAATAAAAATTTGATT
69639804 C
131 C
* *
69639805 GGAAGCCTCATTTGGTCAAAAAGTTGGACGCCTTCAACTTTTTGACATTACGCACAGGAAAAAAG
1 GGAAGCCTCATCTGGTCAAAAAGTAGGACGCCTTCAACTTTTTGACATTACGCACAGGAAAAAA-
69639870 GATGGAACTCCGATGACATCTGAGGCTGCAGAAATTATGGTATATTTAGC-AAATAAAAATTTGA
65 GATGGAACTCCGATGACATCTGAGGCTGCAGAAATTATGGTATATTTA-CTAAATAAAAATTTGA
69639934 TTC
129 TTC
69639937 ATTATAAATA
Statistics
Matches: 121, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
130 58 0.48
131 50 0.41
132 13 0.11
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (131 bp):
GGAAGCCTCATCTGGTCAAAAAGTAGGACGCCTTCAACTTTTTGACATTACGCACAGGAAAAAAG
ATGGAACTCCGATGACATCTGAGGCTGCAGAAATTATGGTATATTTACTAAATAAAAATTTGATT
C
Found at i:69640378 original size:21 final size:21
Alignment explanation
Indices: 69640352--69640394 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
69640342 CAACTTAGAA
*
69640352 CGGAGGCAGCAGCGAGGGAGG
1 CGGAGGCAACAGCGAGGGAGG
69640373 CGGAGGCAACAGCGAGGGAGG
1 CGGAGGCAACAGCGAGGGAGG
69640394 C
1 C
69640395 AGAGCAGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.21, G:0.53, T:0.00
Consensus pattern (21 bp):
CGGAGGCAACAGCGAGGGAGG
Found at i:69641864 original size:27 final size:27
Alignment explanation
Indices: 69641834--69642011 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69641824 ATATTGAGTC
* * * *
69641834 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69641861 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69641888 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69641916 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69641943 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69641970 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69641997 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69642012 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69641973 original size:82 final size:81
Alignment explanation
Indices: 69641855--69642010 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69641845 TGCTATATAA
* *
69641855 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69641920 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69641937 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69642001 CACTTAGTGC
65 CACTTAGTGC
69642011 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69649998 original size:27 final size:27
Alignment explanation
Indices: 69649968--69650145 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
69649958 ATATTGAGCC
* * * *
69649968 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
69649995 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
69650022 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
* ** * *
69650050 CACACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69650077 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69650104 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69650131 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69650146 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69650107 original size:82 final size:81
Alignment explanation
Indices: 69649989--69650144 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
69649979 TGCTATATAA
* * *
69649989 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCACA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCACA
69650054 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
69650071 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
69650135 CACTTAGTGC
65 CACTTAGTGC
69650145 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:69656530 original size:40 final size:40
Alignment explanation
Indices: 69656357--69656527 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
69656347 TGTGGACAAC
* * * * *
69656357 CAGATAATCTACCAGTATTGTGGTCAAACCACCAGTATTG
1 CAGATAAACTGCCAATATTGTGGACAAGCCACCAGTATTG
* * *
69656397 CATATAAACTGCCAATATTATGGACTAGCCACCAGTATTG
1 CAGATAAACTGCCAATATTGTGGACAAGCCACCAGTATTG
* * *
69656437 CAGATAAATTGCCAGTATTGTGGACAAGCCACCCGTATTG
1 CAGATAAACTGCCAATATTGTGGACAAGCCACCAGTATTG
* *
69656477 CAGATAAACTGTCAATATTGTGGACAAGCCACTAGTATTG
1 CAGATAAACTGCCAATATTGTGGACAAGCCACCAGTATTG
*
69656517 CAAATAAACTG
1 CAGATAAACTG
69656528 TCAGTACTTC
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (40 bp):
CAGATAAACTGCCAATATTGTGGACAAGCCACCAGTATTG
Found at i:69661232 original size:7 final size:7
Alignment explanation
Indices: 69661220--69661261 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
69661210 ATATTTAAAA
69661220 TTCATAT
1 TTCATAT
69661227 TTCATAT
1 TTCATAT
69661234 TTCATAT
1 TTCATAT
69661241 TTCATAT
1 TTCATAT
69661248 TTCATAT
1 TTCATAT
69661255 TTCATAT
1 TTCATAT
69661262 ATCAAAATCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTCATAT
Found at i:69663160 original size:18 final size:18
Alignment explanation
Indices: 69663137--69663182 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
69663127 AAACCCCCCC
69663137 AAAAAAAACCTAACCCAA
1 AAAAAAAACCTAACCCAA
69663155 AAAAAAAACCTAACCCAA
1 AAAAAAAACCTAACCCAA
69663173 AAAAAAAACC
1 AAAAAAAACC
69663183 AAGAAACCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.70, C:0.26, G:0.00, T:0.04
Consensus pattern (18 bp):
AAAAAAAACCTAACCCAA
Found at i:69663493 original size:17 final size:17
Alignment explanation
Indices: 69663471--69663509 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
69663461 CCTAAAGGTG
*
69663471 ATTTTA-TCTTCTTTATT
1 ATTTTACTCTTATTT-TT
69663488 ATTTTACTCTTATTTTT
1 ATTTTACTCTTATTTTT
69663505 ATTTT
1 ATTTT
69663510 TATTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTACTCTTATTTTT
Found at i:69663579 original size:13 final size:13
Alignment explanation
Indices: 69663561--69663613 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
69663551 TATATACATC
69663561 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
69663574 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
69663587 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
*
69663602 ATTA-AAAAAAAT
1 ATAATAAAAAAAT
69663614 TTTACCTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
12 4 0.12
13 19 0.56
14 6 0.18
15 5 0.15
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:69664442 original size:25 final size:23
Alignment explanation
Indices: 69664414--69664471 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
69664404 TAACTATTAT
* *
69664414 TATATTAGTGTATATTTTATGTACA
1 TATATTA-TATATATTTT-TGCACA
69664439 TATATATATATATATTTTTGCACA
1 TATAT-TATATATATTTTTGCACA
69664463 TATCATTAT
1 TAT-ATTAT
69664472 TTTATATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 11 0.38
25 16 0.55
26 2 0.07
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (23 bp):
TATATTATATATATTTTTGCACA
Found at i:69669006 original size:13 final size:13
Alignment explanation
Indices: 69668988--69669012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69668978 GTAAGTGATT
69668988 TTGATGATTTTTC
1 TTGATGATTTTTC
69669001 TTGATGATTTTT
1 TTGATGATTTTT
69669013 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:69670014 original size:49 final size:49
Alignment explanation
Indices: 69669956--69670080 Score: 160
Period size: 49 Copynumber: 2.5 Consensus size: 49
69669946 TGTGGTGTGT
* *
69669956 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATTAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
* * * * * *
69670005 CAGTGTAAGACCTGTCTAGGACATGGTATCGGCCTCGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
*
69670054 CAGTGTAAGACCATGTTTGGGACATGG
1 CAGTGTAAGACC-TGTCTGGGACATGG
69670081 TGTCAACATC
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 53 0.82
50 12 0.18
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
Found at i:69672039 original size:18 final size:19
Alignment explanation
Indices: 69672018--69672067 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
69672008 ATGTATTAGA
69672018 TATTAAATAA-ATATTTAT
1 TATTAAATAAGATATTTAT
69672036 TATTTTATAA-AAGATATTTAT
1 TA--TTA-AATAAGATATTTAT
69672057 TAATTAAATAA
1 T-ATTAAATAA
69672068 TTATATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
20 10 0.38
21 11 0.42
22 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATTAAATAAGATATTTAT
Found at i:69673647 original size:13 final size:13
Alignment explanation
Indices: 69673620--69673665 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
69673610 ATTGGATAAA
*
69673620 AATATAT-ATAAT
1 AATATATAAAAAT
69673632 AATATATAAAAAT
1 AATATATAAAAAT
69673645 AATATATAAATAGAT
1 AATATATAAA-A-AT
69673660 AATATA
1 AATATA
69673666 ATAATAGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 7 0.23
13 14 0.47
14 1 0.03
15 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (13 bp):
AATATATAAAAAT
Found at i:69673649 original size:23 final size:22
Alignment explanation
Indices: 69673615--69673696 Score: 83
Period size: 22 Copynumber: 3.5 Consensus size: 22
69673605 CAAAAATTGG
69673615 ATAAAAATATATATAATAATAT
1 ATAAAAATATATATAATAATAT
69673637 ATAAAAATAATATATAAATAGATAAT
1 ATAAAAAT-ATATAT-AATA-AT-AT
* * * *
69673663 ATAATAATAGATAGAATAATAA
1 ATAAAAATATATATAATAATAT
69673685 ATAAATAATATA
1 ATAAA-AATATA
69673697 GAAATATAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
22 13 0.27
23 13 0.27
24 8 0.16
25 6 0.12
26 9 0.18
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (22 bp):
ATAAAAATATATATAATAATAT
Found at i:69673651 original size:15 final size:16
Alignment explanation
Indices: 69673627--69673696 Score: 60
Period size: 15 Copynumber: 4.5 Consensus size: 16
69673617 AAAAATATAT
69673627 ATAATAATATATAA-AA
1 ATAAT-ATATATAATAA
*
69673643 ATAATATATA-AATAG
1 ATAATATATATAATAA
*
69673658 ATAATATA-ATAATAG
1 ATAATATATATAATAA
69673673 ATAGA-ATA-ATAAATAA
1 ATA-ATATATAT-AATAA
69673689 ATAATATA
1 ATAATATA
69673697 GAAATATAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
14 3 0.06
15 28 0.60
16 16 0.34
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (16 bp):
ATAATATATATAATAA
Found at i:69673666 original size:20 final size:19
Alignment explanation
Indices: 69673625--69673736 Score: 81
Period size: 20 Copynumber: 5.8 Consensus size: 19
69673615 ATAAAAATAT
*
69673625 ATATAATA-ATATATA-AA
1 ATATAATATATAAATAGAA
69673642 A-ATAATATATAAATAGATA
1 ATATAATATATAAATAGA-A
*
69673661 ATATAATA-ATAGATAG-A
1 ATATAATATATAAATAGAA
*
69673678 ATAATAAATAAATAATATAGAA
1 AT-AT-AATATATAA-ATAGAA
* *
69673700 ATATAGATTTATAAATCGAA
1 ATATA-ATATATAAATAGAA
*
69673720 ATATATTAATATAAATA
1 ATATAAT-ATATAAATA
69673737 TTGAAGAGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
16 6 0.08
17 10 0.13
18 3 0.04
19 14 0.19
20 27 0.36
21 12 0.16
22 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (19 bp):
ATATAATATATAAATAGAA
Found at i:69677338 original size:15 final size:15
Alignment explanation
Indices: 69677318--69677348 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69677308 CTGTATCAGT
69677318 AATGAATCAAAGCAC
1 AATGAATCAAAGCAC
*
69677333 AATGAATCAGAGCAC
1 AATGAATCAAAGCAC
69677348 A
1 A
69677349 TGGAACTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.16, T:0.13
Consensus pattern (15 bp):
AATGAATCAAAGCAC
Found at i:69677488 original size:20 final size:20
Alignment explanation
Indices: 69677463--69677502 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
69677453 GATACATAGT
69677463 ATTAGATTAGTACTAGTTAG
1 ATTAGATTAGTACTAGTTAG
*
69677483 ATTAGATTAGTATTAGTTAG
1 ATTAGATTAGTACTAGTTAG
69677503 TGATCCCAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (20 bp):
ATTAGATTAGTACTAGTTAG
Found at i:69679982 original size:10 final size:11
Alignment explanation
Indices: 69679963--69679995 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
69679953 TTGATATGTT
69679963 AATGAAGAGAA
1 AATGAAGAGAA
69679974 AAT-AAGAGAA
1 AATGAAGAGAA
*
69679984 AGTGAAGAGAA
1 AATGAAGAGAA
69679995 A
1 A
69679996 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:69681657 original size:54 final size:54
Alignment explanation
Indices: 69681584--69681774 Score: 373
Period size: 54 Copynumber: 3.5 Consensus size: 54
69681574 ATTGTCGTTG
69681584 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
69681638 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
69681692 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
69681746 CAGGGGATTTAGTCTGGACTGGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
69681775 ACTGTAAGGA
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 136 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:69681948 original size:46 final size:46
Alignment explanation
Indices: 69681891--69682111 Score: 327
Period size: 46 Copynumber: 4.8 Consensus size: 46
69681881 GAAAGAACGG
* * *
69681891 GAAATGAATAAGCCCATGGTTGAAAGATACCATGGCAACGTGATAT
1 GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
*
69681937 GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
1 GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
69681983 GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
1 GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
* *
69682029 GAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-
1 GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
* * * * *
69682074 GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 G-AAACGAATAAGACCATGGTTGAAAGATACCATGGCA
69682112 TCATGTCAAA
Statistics
Matches: 164, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 163 0.99
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.19
Consensus pattern (46 bp):
GAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
Found at i:69683727 original size:17 final size:17
Alignment explanation
Indices: 69683705--69683741 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
69683695 TGGGAGAAAG
69683705 TTTCCTGAATCAGTCTA
1 TTTCCTGAATCAGTCTA
*
69683722 TTTCCTGAATGAGTCTA
1 TTTCCTGAATCAGTCTA
69683739 TTT
1 TTT
69683742 TCAAGAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (17 bp):
TTTCCTGAATCAGTCTA
Found at i:69684832 original size:46 final size:46
Alignment explanation
Indices: 69684765--69684946 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
69684755 GCTCTTTGAA
* *
69684765 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAT
* *
69684811 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAT
1 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAT
* *
69684857 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGACAACATGAC
1 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * *
69684903 A-GAAAACGAGTAAAATCATAGTTGAAAGATACTATGGCATCATG
1 ATG-AAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATG
69684947 TCGAAGATAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:69693276 original size:418 final size:418
Alignment explanation
Indices: 69692471--69693305 Score: 1232
Period size: 418 Copynumber: 2.0 Consensus size: 418
69692461 TGGTATCATA
* *
69692471 TTAGATATATTACATTAAACTTGATTTTAAACCCCATCAGTTTTGTTATAGTTATTAAGTTTCAA
1 TTAGATATATTACATTAAACTTGAATTTAAACCCCATCACTTTTGTTATAGTTATTAAGTTTCAA
* * *
69692536 ACTTCAATCAAGTACAACAAAAACCCTGTAACAATGTAACAACTTAGATGTAACTGATATTTTAG
66 ACTTCAATCAAGTACAACAAAAACCCTGTAACAATCTAAAAACTTAGATGCAACTGATATTTTAG
* *
69692601 TCTCTCTTTTATTTTCGCCTCAAGTATTATAGACAAATCGAAAAGAAATGACATAATAACTTATT
131 TCTCTCTTTTATTTTCACATCAAGTATTATAGACAAATCGAAAAGAAATGACATAATAACTTATT
* * * * * *
69692666 TGACTCTTTAAACGTTATAAAAAAATCATTTTATCCTTTTATTTAATTTTTTGCATATGTAGTTC
196 TGACTATCTAAACATTATAAAAAAATCATTTTATCCCTTCATTTAATTTTTTACATATGTAGTTC
*
69692731 TTAAACTTGTATTGTTTATAAAATCAACCTAAAATAGATGAAAAGGTTAAAAGTTAATTAACTTT
261 TTAAACTTGTATTGTTTATAAAATCAACCTAAAATAGATGAAAAAGTTAAAAGTTAATTAACTTT
*
69692796 TCTACATGACAACCGACTTAGAAGTCCACGTGTATATCATGTTAAAAATTAATTAATTTTTTAAA
326 TCTACAAGACAACCGACTTAGAAGTCCACGTGTATATCATGTTAAAAATTAATTAATTTTTT--A
*
69692861 AATAAAAAGTA-TT-AAAAAATTCATAATG
389 AATAAAAAATATTTAAAAAAATTCATAATG
* * * *
69692889 TTAGATATATTACATTAAACTTGAATTTAAACTCCATCACTTTTGTTGTATTTATTATGTTTCAA
1 TTAGATATATTACATTAAACTTGAATTTAAACCCCATCACTTTTGTTATAGTTATTAAGTTTCAA
* * *
69692954 ACTTCAATTAAGTACAACAAAAACCCTGTAACAA-CTAAGAAATTTAGATGCAACTGATTTTTTA
66 ACTTCAATCAAGTACAACAAAAACCCTGTAACAATCTAA-AAACTTAGATGCAACTGATATTTTA
* *
69693018 GTCTCTCTTTTATTTTCACAT-AAGTATTATAGACAAATCGAAAATAAATGTCATAATAACTTAT
130 GTCTCTCTTTTATTTTCACATCAAGTATTATAGACAAATCGAAAAGAAATGACATAATAACTTAT
* * *
69693082 TTGGCTATCT-AACATTATAAAAAAATTATTTTATCCCTTCATTTAATTTTTTACATCTGTAGTT
195 TTGACTATCTAAACATTATAAAAAAATCATTTTATCCCTTCATTTAATTTTTTACATATGTAGTT
* * * *
69693146 TTTAAACTTGTATTGTTTATGAAATCAGCCTAAAATAGATGAAAAAGTTAAAAGTTGATTAACTT
260 CTTAAACTTGTATTGTTTATAAAATCAACCTAAAATAGATGAAAAAGTTAAAAGTTAATTAACTT
* * * * * *
69693211 TTTTGACAAGGCAACC-AGCTTGGAAGTCCATGTGTATGTCATGTTAAAAATTAATTATTTTTTT
325 TTCT-ACAAGACAACCGA-CTTAGAAGTCCACGTGTATATCATGTTAAAAATTAATTA-ATTTTT
69693275 TAAATAAAAAATATTTAAAAAAATTCATAAT
387 TAAATAAAAAATATTTAAAAAAATTCATAAT
69693306 TCATAATTTT
Statistics
Matches: 373, Mismatches: 38, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
416 123 0.33
417 98 0.26
418 152 0.41
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (418 bp):
TTAGATATATTACATTAAACTTGAATTTAAACCCCATCACTTTTGTTATAGTTATTAAGTTTCAA
ACTTCAATCAAGTACAACAAAAACCCTGTAACAATCTAAAAACTTAGATGCAACTGATATTTTAG
TCTCTCTTTTATTTTCACATCAAGTATTATAGACAAATCGAAAAGAAATGACATAATAACTTATT
TGACTATCTAAACATTATAAAAAAATCATTTTATCCCTTCATTTAATTTTTTACATATGTAGTTC
TTAAACTTGTATTGTTTATAAAATCAACCTAAAATAGATGAAAAAGTTAAAAGTTAATTAACTTT
TCTACAAGACAACCGACTTAGAAGTCCACGTGTATATCATGTTAAAAATTAATTAATTTTTTAAA
TAAAAAATATTTAAAAAAATTCATAATG
Found at i:69707887 original size:19 final size:20
Alignment explanation
Indices: 69707862--69707933 Score: 94
Period size: 19 Copynumber: 3.7 Consensus size: 20
69707852 AATTACAGAA
69707862 AAAAATTT-AAAATAATTAT
1 AAAAATTTCAAAATAATTAT
* *
69707881 CAAAATTTCAAAATAATTTT
1 AAAAATTTCAAAATAATTAT
* *
69707901 TAAAA-TTCAAAATATTTAT
1 AAAAATTTCAAAATAATTAT
69707920 AAAAATTTCAAAAT
1 AAAAATTTCAAAAT
69707934 TTATATTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
19 23 0.51
20 22 0.49
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATTTCAAAATAATTAT
Found at i:69707906 original size:39 final size:41
Alignment explanation
Indices: 69707863--69707947 Score: 120
Period size: 39 Copynumber: 2.1 Consensus size: 41
69707853 ATTACAGAAA
* *
69707863 AAAATTTAAAATAATTATCAAAATTTCAAAA-TA-ATTTTT
1 AAAATTCAAAATAATTATAAAAATTTCAAAATTATATTTTT
*
69707902 AAAATTCAAAATATTTATAAAAATTTCAAAATTTATATTTTT
1 AAAATTCAAAATAATTATAAAAATTTCAAAA-TTATATTTTT
69707944 AAAA
1 AAAA
69707948 AAATTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
39 28 0.70
41 2 0.05
42 10 0.25
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (41 bp):
AAAATTCAAAATAATTATAAAAATTTCAAAATTATATTTTT
Found at i:69712668 original size:15 final size:15
Alignment explanation
Indices: 69712633--69712684 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
69712623 TTAAGAATTT
*
69712633 TATTAAATTAT-ATA
1 TATTTAATTATAATA
69712647 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
69712661 TATTTAATAATAAT-
1 TATTTAATTATAATA
69712675 TATGTTAATT
1 TAT-TTAATT
69712685 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:69712782 original size:16 final size:16
Alignment explanation
Indices: 69712761--69712802 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
69712751 TTATTAAATT
*
69712761 ATATATTTTAATTATA
1 ATATATTTTAATAATA
69712777 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
69712792 AT-TATGTTTAA
1 ATATAT-TTTAA
69712803 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:69712787 original size:15 final size:15
Alignment explanation
Indices: 69712752--69712793 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
69712742 TTAAGAATTT
*
69712752 TATTAAATTAT-ATA
1 TATTTAATTATAATA
69712766 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
69712780 TATTTAATAATAAT
1 TATTTAATTATAAT
69712794 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:69712787 original size:119 final size:120
Alignment explanation
Indices: 69712575--69712799 Score: 434
Period size: 119 Copynumber: 1.9 Consensus size: 120
69712565 NNNNNNNNNN
*
69712575 AGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTTTTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAGAATTTTATTAAA
69712640 TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
69712695 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAA-TTTTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAGAATTTTATTAAA
69712759 TTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TTATATATTTTAATTATAATATATTTAATAATAATTATGTT
69712800 TAAATATGAT
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
119 60 0.58
120 44 0.42
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (120 bp):
AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAGAATTTTATTAAA
TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
Found at i:69712902 original size:154 final size:155
Alignment explanation
Indices: 69712737--69713049 Score: 567
Period size: 154 Copynumber: 2.0 Consensus size: 155
69712727 ATAAGAATAT
*
69712737 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
69712802 AATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATA
66 AATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATA
69712865 ATAATTTACCAAAACAAATTTATGC
131 ATAATTTACCAAAACAAATTTATGC
69712890 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATT-TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
69712955 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAATTATTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAA
* *
69713020 TAATCATTTACCAAAACAAATTTCTGC
129 TAATAATTTACCAAAACAAATTTATGC
69713047 TAA
1 TAA
69713050 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
153 5 0.03
154 86 0.56
155 2 0.01
157 60 0.39
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (155 bp):
TAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTATGC
Found at i:69712930 original size:18 final size:17
Alignment explanation
Indices: 69712902--69712936 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69712892 ATTATTAAGA
*
69712902 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
69712919 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
69712937 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:69713190 original size:16 final size:16
Alignment explanation
Indices: 69713169--69713207 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
69713159 TTGATTTGCT
*
69713169 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
69713185 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
69713201 ATTACAC
1 ATTACAC
69713208 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:69713208 original size:16 final size:16
Alignment explanation
Indices: 69713182--69713238 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
69713172 ACACAGCTTT
* *
69713182 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
69713198 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
69713214 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
69713230 TCCAATACA
1 TCCAATACA
69713239 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:69718564 original size:24 final size:24
Alignment explanation
Indices: 69718536--69718604 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 24
69718526 TTTTTAGAAG
*
69718536 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGCATAATAT
69718560 ATTTA-TCATTTATTAGCATAATAT
1 ATTTAGT-ATTTATTAGCATAATAT
*
69718584 ATTTAGCATTTATTAGCATAA
1 ATTTAGTATTTATTAGCATAA
69718605 AATCTTAAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAT
Found at i:69732746 original size:12 final size:12
Alignment explanation
Indices: 69732729--69732765 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
69732719 AATGATATTA
69732729 TATTAATAATTG
1 TATTAATAATTG
69732741 TATTAATAATT-
1 TATTAATAATTG
*
69732752 TA-TAAGAATTG
1 TATTAATAATTG
69732763 TAT
1 TAT
69732766 CATATCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
10 7 0.32
11 4 0.18
12 11 0.50
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (12 bp):
TATTAATAATTG
Found at i:69734192 original size:22 final size:23
Alignment explanation
Indices: 69734165--69734208 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
69734155 TTAGCGAACA
69734165 AAATATATAAATATA-AATAAAC
1 AAATATATAAATATATAATAAAC
* *
69734187 AAATATTTATATATATAATAAA
1 AAATATATAAATATATAATAAA
69734209 ATATAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATATATAAATATATAATAAAC
Found at i:69734227 original size:32 final size:28
Alignment explanation
Indices: 69734167--69734230 Score: 74
Period size: 32 Copynumber: 2.1 Consensus size: 28
69734157 AGCGAACAAA
*
69734167 ATATATAAATATAAATAAACAAATATTT
1 ATATATAAATAAAAATAAACAAATATTT
*
69734195 ATATATATAATAAAATATAAATAGAATAATTT
1 ATATATA-AATAAAA-ATAAACA-AAT-ATTT
69734227 ATAT
1 ATAT
69734231 TTCAATTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.23
29 6 0.20
30 6 0.20
31 3 0.10
32 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (28 bp):
ATATATAAATAAAAATAAACAAATATTT
Found at i:69734391 original size:18 final size:18
Alignment explanation
Indices: 69734349--69734400 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
69734339 AACAAAAAAT
*
69734349 AAATATAAAAATTTTATA
1 AAATATAAAAATATTATA
69734367 AAATATAAAAATATTA-A
1 AAATATAAAAATATTATA
*
69734384 ATAT-TATAAAATATTAT
1 AAATATA-AAAATATTAT
69734401 TAACACACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 2 0.07
17 13 0.43
18 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATATAAAAATATTATA
Found at i:69739088 original size:22 final size:20
Alignment explanation
Indices: 69739063--69739114 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
69739053 AAATAAAAAC
*
69739063 ATATAATAATATAAATTATATA
1 ATATAA-AA-ATAAATAATATA
*
69739085 ATATAAAAATATATAATATA
1 ATATAAAAATAAATAATATA
69739105 ATATATAAAA
1 ATATA-AAAA
69739115 CTATTATGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 15 0.56
21 6 0.22
22 6 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATATAAAAATAAATAATATA
Found at i:69739097 original size:15 final size:15
Alignment explanation
Indices: 69739055--69739105 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
69739045 TAATTTACAA
*
69739055 ATAAAAACATATAAT
1 ATAAAAATATATAAT
*
69739070 AATATAAATTATATAAT
1 -ATA-AAAATATATAAT
69739087 ATAAAAATATATAAT
1 ATAAAAATATATAAT
69739102 ATAA
1 ATAA
69739106 TATATAAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 15 0.48
16 6 0.19
17 10 0.32
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAAAATATATAAT
Found at i:69739256 original size:18 final size:19
Alignment explanation
Indices: 69739221--69739274 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
69739211 ACATATATGA
* *
69739221 ATATAATGAAATAAAT-A-
1 ATATAATAAAATATATAAC
69739238 ATATAATAAAAATATATAAC
1 ATATAAT-AAAATATATAAC
*
69739258 ATATAATAAAATCTATA
1 ATATAATAAAATATATA
69739275 TATATAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
19 10 0.32
20 7 0.23
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
ATATAATAAAATATATAAC
Found at i:69741306 original size:175 final size:175
Alignment explanation
Indices: 69741009--69741336 Score: 577
Period size: 175 Copynumber: 1.9 Consensus size: 175
69740999 ATAAACACGT
* *
69741009 GAAAGCCAAATCTGCTGTGTCTTAGATTTTCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGCCAAATCTGCTATGTCTTAGATTTTCTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
*
69741074 ATCTACTTCAATGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
66 ATCTACTCCAATGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
69741139 ATGCCAGATCTGTTATCTTGGATGTGCGTTGGTGTGGGAACATCC
131 ATGCCAGATCTGTTATCTTGGATGTGCGTTGGTGTGGGAACATCC
* *
69741184 GAAAGTCAAATCTGCTATGTCTTCGATTTGT-TCCTTGTAAACACAAGGATGCCAAATCATCTTG
1 GAAAGCCAAATCTGCTATGTCTTAGATTT-TCTCCTTGTAAACACAAGGATGCCAAATCATCTTG
* *
69741248 GATCTGCTCCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
65 GATCTACTCCAATGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
69741313 GATGCCAGATCTGTTATCTTGGAT
130 GATGCCAGATCTGTTATCTTGGAT
69741337 CTGTTTCAGT
Statistics
Matches: 145, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
175 144 0.99
176 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (175 bp):
GAAAGCCAAATCTGCTATGTCTTAGATTTTCTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
ATCTACTCCAATGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATGTGCGTTGGTGTGGGAACATCC
Found at i:69741347 original size:86 final size:85
Alignment explanation
Indices: 69741067--69741375 Score: 247
Period size: 86 Copynumber: 3.6 Consensus size: 85
69741057 ATGCCAAATC
* * *
69741067 ATCTTGGATCTACTTCAATGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTGAAA-CATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCGTCGA
69741132 AATGGAGATGCCAGATCTGTT
65 AATGGAGATGCCAGATCTGTT
* ** * * * * *
69741153 ATCTTGGATGTGCGTTGGTGTGGGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTG-T-T
1 ATCTTGGATCTGC-TT-CAGT-GAAACATCTGAAGGTCAGATCTGCTATG---T--ATCTGCTCT
* *** *
69741216 CC-TTGTAAACACAAGGATGCCAAATC----
58 CCGTCG-AAA-TGGA-GATGCCAGATCTGTT
* *
69741242 ATCTTGGATCTGCTCCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTGAAA-CATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCGTCGA
69741307 AATGGAGATGCCAGATCTGTT
65 AATGGAGATGCCAGATCTGTT
* *
69741328 ATCTTGGATCTGTTTCAGTGTAAACA-CGTGAAGGCCAGATCTGCTATG
1 ATCTTGGATCTGCTTCAGTG-AAACATC-TGAAGGTCAGATCTGCTATG
69741376 CCTTGGTCTG
Statistics
Matches: 167, Mismatches: 35, Indels: 42
0.68 0.14 0.17
Matches are distributed among these distances:
82 14 0.08
83 2 0.01
84 7 0.04
85 3 0.02
86 52 0.31
87 27 0.16
88 22 0.13
89 15 0.09
90 2 0.01
91 7 0.04
92 2 0.01
93 14 0.08
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (85 bp):
ATCTTGGATCTGCTTCAGTGAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCGTCGAA
ATGGAGATGCCAGATCTGTT
Found at i:69744723 original size:25 final size:25
Alignment explanation
Indices: 69744688--69744735 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
69744678 TTGTGTCCTT
69744688 GGTAATAAGTGTCCCAATTTTCACC
1 GGTAATAAGTGTCCCAATTTTCACC
* *
69744713 GGTAATCAGTGTTCCAATTTTCA
1 GGTAATAAGTGTCCCAATTTTCA
69744736 ATTCCTTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (25 bp):
GGTAATAAGTGTCCCAATTTTCACC
Found at i:69748633 original size:14 final size:16
Alignment explanation
Indices: 69748598--69748634 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
69748588 CAAACAATGC
69748598 GATG-AAATGCTATGA
1 GATGCAAATGCTATGA
69748613 GATGCAAATGC-ATGA
1 GATGCAAATGCTATGA
69748628 -ATGCAAA
1 GATGCAAA
69748635 AAGGACATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (16 bp):
GATGCAAATGCTATGA
Found at i:69751696 original size:39 final size:39
Alignment explanation
Indices: 69751613--69751699 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
69751603 GGACTTTAGC
* * * * *
69751613 CCGGACATATTTCCGGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69751652 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69751691 CCGGATATA
1 CCGGATATA
69751700 CATCACTGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:69758658 original size:16 final size:16
Alignment explanation
Indices: 69758639--69758682 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
69758629 TTCTTATTTC
69758639 TCCTTTCTTTTTCAAT
1 TCCTTTCTTTTTCAAT
* **
69758655 TCCTTTGTTTTTCTTT
1 TCCTTTCTTTTTCAAT
69758671 TCCTTTTCTTTT
1 TCC-TTTCTTTT
69758683 GATTTTCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.05, C:0.23, G:0.02, T:0.70
Consensus pattern (16 bp):
TCCTTTCTTTTTCAAT
Found at i:69761525 original size:12 final size:12
Alignment explanation
Indices: 69761508--69761532 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69761498 GGTGTTCATT
69761508 CGGTTAACCGAC
1 CGGTTAACCGAC
69761520 CGGTTAACCGAC
1 CGGTTAACCGAC
69761532 C
1 C
69761533 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:69761707 original size:9 final size:9
Alignment explanation
Indices: 69761693--69761735 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
69761683 TTTGGTTAAA
69761693 AATTACCCG
1 AATTACCCG
69761702 AATTACCCG
1 AATTACCCG
69761711 AATTACCCG
1 AATTACCCG
*
69761720 AATTAACCG
1 AATTACCCG
69761729 AATTACC
1 AATTACC
69761736 GAAAAATACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.37, C:0.30, G:0.09, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:69762368 original size:27 final size:27
Alignment explanation
Indices: 69762337--69762389 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
69762327 ATTTAACCTT
*
69762337 CATAGTAGAGTCAACAGTATAAGTTTC
1 CATAGTAGAGTCAACAGTACAAGTTTC
*
69762364 CATAGTAGAGTCAATAGTACAAGTTT
1 CATAGTAGAGTCAACAGTACAAGTTT
69762390 TCTTCACACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (27 bp):
CATAGTAGAGTCAACAGTACAAGTTTC
Found at i:69762698 original size:14 final size:14
Alignment explanation
Indices: 69762679--69762709 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
69762669 AATGTAAAAA
69762679 AATAAAAAAGGGCC
1 AATAAAAAAGGGCC
69762693 AATAAAAAAGGGCC
1 AATAAAAAAGGGCC
69762707 AAT
1 AAT
69762710 TGGTTATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.58, C:0.13, G:0.19, T:0.10
Consensus pattern (14 bp):
AATAAAAAAGGGCC
Found at i:69763909 original size:2 final size:2
Alignment explanation
Indices: 69763904--69763932 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69763894 AAAACACACG
69763904 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69763933 TCTAAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:69764356 original size:15 final size:16
Alignment explanation
Indices: 69764317--69764364 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
69764307 AATGTTTTAT
*
69764317 TTTATATAATTTATAA
1 TTTATAAAATTTATAA
**
69764333 TACATAAAATTTA-AA
1 TTTATAAAATTTATAA
*
69764348 TTTATAAAATATATAA
1 TTTATAAAATTTATAA
69764364 T
1 T
69764365 ACTACTATGA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTATAAAATTTATAA
Found at i:69764438 original size:9 final size:9
Alignment explanation
Indices: 69764404--69764455 Score: 51
Period size: 8 Copynumber: 6.3 Consensus size: 9
69764394 TAATATCGCT
69764404 ATATATAAA
1 ATATATAAA
69764413 AT-TATAAA
1 ATATATAAA
*
69764421 AAATA-AAA
1 ATATATAAA
69764429 ATATATAAA
1 ATATATAAA
*
69764438 AT-TA-ATA
1 ATATATAAA
69764445 ATAT-TAAA
1 ATATATAAA
69764453 ATA
1 ATA
69764456 AAATAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
7 4 0.11
8 22 0.63
9 9 0.26
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
ATATATAAA
Found at i:69764460 original size:16 final size:16
Alignment explanation
Indices: 69764415--69764468 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 16
69764405 TATATAAAAT
*
69764415 TATAAAAAATAAA-AA
1 TATATAAAATAAATAA
*
69764430 TATATAAAATTAATAA
1 TATATAAAATAAATAA
69764446 TAT-TAAAATAAAATAA
1 TATATAAAAT-AAATAA
69764462 T-TATAAA
1 TATATAAA
69764469 TATATTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 18 0.55
16 15 0.45
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TATATAAAATAAATAA
Found at i:69765257 original size:22 final size:23
Alignment explanation
Indices: 69765217--69765266 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
69765207 TATAATGACG
69765217 GAAAAATATAATTATTTTATAAA-
1 GAAAAATATAATTATTTTA-AAAT
*
69765240 GAAAAATGTAATTA-TTTAAAAT
1 GAAAAATATAATTATTTTAAAAT
69765262 GAAAA
1 GAAAA
69765267 TTTTACACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 3 0.12
22 9 0.36
23 13 0.52
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (23 bp):
GAAAAATATAATTATTTTAAAAT
Found at i:69770177 original size:61 final size:61
Alignment explanation
Indices: 69770090--69770260 Score: 193
Period size: 61 Copynumber: 2.8 Consensus size: 61
69770080 GATAAAGAGG
* * * * *
69770090 GTTTAAGGTTTAATAAATTT-GAGGTTTGGGGTTTGATTTTGAGGATAAGGATGATAAGAAG
1 GTTTAAGGTTTAAT-GATTTAGGGGTTTAGGGTTTGATTTTAAGGATAAGGATGATAAGAAA
* * * * *
69770151 GTTTATA-GTTTAATGGTTTAGGGGTTTAAGGATTGATTTTAAGGATAAAGATGATAATAAA
1 GTTTA-AGGTTTAATGATTTAGGGGTTTAGGGTTTGATTTTAAGGATAAGGATGATAAGAAA
* * *
69770212 GTTTAAGGTTTAATGATTTGGGGGTTTAGAGTTTGATTTTAAGGTTAAG
1 GTTTAAGGTTTAATGATTTAGGGGTTTAGGGTTTGATTTTAAGGATAAG
69770261 AATGGTATGT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
60 4 0.04
61 85 0.94
62 1 0.01
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (61 bp):
GTTTAAGGTTTAATGATTTAGGGGTTTAGGGTTTGATTTTAAGGATAAGGATGATAAGAAA
Found at i:69785074 original size:20 final size:19
Alignment explanation
Indices: 69785049--69785100 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
69785039 AACGTTATAG
69785049 AATATTTTTTAATTTTTTT
1 AATATTTTTTAATTTTTTT
69785068 AAATATTTTTATAA-TTTTTT
1 -AATATTTTT-TAATTTTTTT
*
69785088 AATATTTGTTAAT
1 AATATTTTTTAAT
69785101 ATGACATGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 8 0.28
20 15 0.52
21 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
AATATTTTTTAATTTTTTT
Found at i:69785078 original size:19 final size:18
Alignment explanation
Indices: 69785049--69785100 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
69785039 AACGTTATAG
69785049 AATATTTTTTAATTTTTTT
1 AATA-TTTTTAATTTTTTT
*
69785068 AAATATTTTTATAATTTTTT
1 -AATATTTTTA-ATTTTTTT
69785088 AATATTTGTTAAT
1 AATATTT-TTAAT
69785101 ATGACATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
AATATTTTTAATTTTTTT
Found at i:69785100 original size:10 final size:10
Alignment explanation
Indices: 69785049--69785102 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
69785039 AACGTTATAG
69785049 AATATTTTTT
1 AATATTTTTT
69785059 AAT-TTTTTT
1 AATATTTTTT
69785068 AA-ATATTTTT
1 AATAT-TTTTT
69785078 -ATAATTTTTT
1 AAT-ATTTTTT
*
69785088 AATATTTGTT
1 AATATTTTTT
69785098 AATAT
1 AATAT
69785103 GACATGTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 10 0.26
10 24 0.63
11 4 0.11
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
AATATTTTTT
Found at i:69785280 original size:16 final size:15
Alignment explanation
Indices: 69785238--69785294 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 15
69785228 TGGATAGCTA
69785238 AATTTAAC-AAAAAT
1 AATTTAACTAAAAAT
* *
69785252 AA-ATAAATAAAAACT
1 AATTTAACTAAAAA-T
69785267 AATTTAACTAAAAAAT
1 AATTTAACT-AAAAAT
69785283 AATTTAA-TAAAA
1 AATTTAACTAAAA
69785295 TATATAAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 3 0.09
14 11 0.31
15 4 0.11
16 12 0.34
17 5 0.14
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (15 bp):
AATTTAACTAAAAAT
Found at i:69789243 original size:15 final size:15
Alignment explanation
Indices: 69789219--69789248 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69789209 ATATAATTTT
*
69789219 AAAATTTTTAAAGGA
1 AAAATATTTAAAGGA
69789234 AAAATATTTAAAGGA
1 AAAATATTTAAAGGA
69789249 TAATCATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (15 bp):
AAAATATTTAAAGGA
Found at i:69791761 original size:68 final size:67
Alignment explanation
Indices: 69791689--69791838 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
69791679 CATCATGTGT
* * * *
69791689 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
69791751 ATGTAG
62 ATGTAG
** * *
69791757 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
69791822 AG
66 AG
69791824 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
69791839 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:69791794 original size:64 final size:64
Alignment explanation
Indices: 69791713--69791896 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
69791703 AGACATTATG
* *
69791713 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
69791777 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69791842 AA
63 AA
* * * *
69791844 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
69791897 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69796780 original size:27 final size:27
Alignment explanation
Indices: 69796745--69796803 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
69796735 AATTTGCCAT
*
69796745 AAGGCAATCCATTCAGAGTACGCCACA
1 AAGGTAATCCATTCAGAGTACGCCACA
*
69796772 AAGGTAATCCATTTAGAGTACGCCACA
1 AAGGTAATCCATTCAGAGTACGCCACA
69796799 AAGGT
1 AAGGT
69796804 TAACATGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (27 bp):
AAGGTAATCCATTCAGAGTACGCCACA
Found at i:69807523 original size:25 final size:24
Alignment explanation
Indices: 69807489--69807557 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
69807479 GACTATAAAG
69807489 AATAATAAATTAAAATAAATATATAT
1 AATAATAAATT-AAA-AAATATATAT
*
69807515 AATAA-AAATTAAAAAATATATGT
1 AATAATAAATTAAAAAATATATAT
**
69807538 -ATTTTAAAGTTAAAAAATAT
1 AATAATAAA-TTAAAAAATAT
69807558 TAAAGTGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
22 2 0.05
23 12 0.32
24 14 0.37
25 5 0.13
26 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (24 bp):
AATAATAAATTAAAAAATATATAT
Done.