Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 214 of 310
Found at i:70091153 original size:43 final size:44
Alignment explanation
Indices: 70091072--70091154 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 44
70091062 CATGTTGATA
* *
70091072 TCTTCGATCTGCTCTCTGCCGAACACAGAGATGCCAAATCTGCT
1 TCTTCGATCTGCTCTCTGACGAACACAGAGACGCCAAATCTGCT
* * *
70091116 TCTTCGATTTGTTCTCTGAC-AATACAGAGACGCCAAATC
1 TCTTCGATCTGCTCTCTGACGAACACAGAGACGCCAAATC
70091155 ATCTTATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 17 0.50
44 17 0.50
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGACGAACACAGAGACGCCAAATCTGCT
Found at i:70091560 original size:205 final size:205
Alignment explanation
Indices: 70091117--70091901 Score: 1187
Period size: 205 Copynumber: 3.8 Consensus size: 205
70091107 AAATCTGCTT
* * * * * *
70091117 CTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCATCTTATATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCAGCGTAAACAT
* *
70091182 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTT
* ** * * * * *
70091247 GGATCTTGCTTCAGTGA-AATTATCTGAAGGTGAGATATGCTATGTATCTACTCCCCGTTGAAGT
131 GGATC-TGCTTCAG-CATAAGCATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATCGAAGT
*
70091311 TGAGATGCTAGA
194 GGAGATGCTAGA
*
70091323 CTTCAATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCAGCGTAAACAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCAGCGTAAACAT
* *
70091388 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTT
70091453 GGATCTGCTTCAGCATAAGCATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATCGAAGTGG
131 GGATCTGCTTCAGCATAAGCATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATCGAAGTGG
70091518 AGATGCTAGA
196 AGATGCTAGA
*
70091528 CTTTGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCAGCGTAAACAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCAGCGTAAACAT
* *
70091593 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTT
* * *
70091658 GGATCTGCTTCAGCATAAGCATCTGAAGGTGAGATCTGCTATGTATCTGATCTCTATCAAAGTGG
131 GGATCTGCTTCAGCATAAGCATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATCGAAGTGG
*
70091723 AGATGCCAGA
196 AGATGCTAGA
70091733 CTTCGATTTGTTCTCTGACAATACAGAGATGCC-AAGTCATCTTAGATTTGCTTCAGCGTAAACA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAA-TCATCTTAGATTTGCTTCAGCGTAAACA
* * ** *
70091797 TGTGAAAGCCAAATCAGCCATGTCTTCGATTTATTCCTCATAAGCACAAGAATACCAAACCATAT
65 TGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCT
** * * **
70091862 TGGATCTATTTCAGTATAAACATCTGAAGGCCAGATCTGC
130 TGGATCTGCTTCAGCATAAGCATCTGAAGGTGAGATCTGC
70091902 CATGCTGCGG
Statistics
Matches: 537, Mismatches: 40, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
204 3 0.01
205 410 0.76
206 124 0.23
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCAGCGTAAACAT
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTT
GGATCTGCTTCAGCATAAGCATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATCGAAGTGG
AGATGCTAGA
Found at i:70095806 original size:332 final size:332
Alignment explanation
Indices: 70095200--70095864 Score: 1321
Period size: 332 Copynumber: 2.0 Consensus size: 332
70095190 GTAGAGGTTC
70095200 TGACAGATGCTCGATAAGCCAGGAGTGCAAACGGTAACTTCTTATGCCAATCTCTATAGGTCTCA
1 TGACAGATGCTCGATAAGCCAGGAGTGCAAACGGTAACTTCTTATGCCAATCTCTATAGGTCTCA
70095265 GTCATCTTCCTCACTATTTTCTTAATGTTCTTGTTGGTGGCCTCCACTACCCCATTCATTTTTGG
66 GTCATCTTCCTCACTATTTTCTTAATGTTCTTGTTGGTGGCCTCCACTACCCCATTCATTTTTGG
70095330 ACGATAAGGAGAAGAATTGTGATGCTTGATCTTGAACTGGTCGCAAACCTCTGTTATTGTTTTGT
131 ACGATAAGGAGAAGAATTGTGATGCTTGATCTTGAACTGGTCGCAAACCTCTGTTATTGTTTTGT
70095395 TGTTCAAGTTTAATGCATTGTCGGATATGATCTTTTCAGGCATTCCATACCGACAAATGATCTCT
196 TGTTCAAGTTTAATGCATTGTCGGATATGATCTTTTCAGGCATTCCATACCGACAAATGATCTCT
70095460 TTCTTTAAGAATTGACTAACAGCTGACTTAGTAACATTCGCATAAGAAGCGGCCTCTACCCATTT
261 TTCTTTAAGAATTGACTAACAGCTGACTTAGTAACATTCGCATAAGAAGCGGCCTCTACCCATTT
70095525 TGTAAAG
326 TGTAAAG
70095532 TGACAGATGCTCGATAAGCCAGGAGTGCAAACGGTAACTTCTTATGCCAATCTCTATAGGTCTCA
1 TGACAGATGCTCGATAAGCCAGGAGTGCAAACGGTAACTTCTTATGCCAATCTCTATAGGTCTCA
70095597 GTCATCTTCCTCACTATTTTCTTAATGTTCTTGTTGGTGGCCTCCACTACCCCATTCATTTTTGG
66 GTCATCTTCCTCACTATTTTCTTAATGTTCTTGTTGGTGGCCTCCACTACCCCATTCATTTTTGG
*
70095662 ACGATAAGGAGAAGAATTGTGATGCTTGATCTTGAACTGTTCGCAAACCTCTGTTATTGTTTTGT
131 ACGATAAGGAGAAGAATTGTGATGCTTGATCTTGAACTGGTCGCAAACCTCTGTTATTGTTTTGT
70095727 TGTTCAAGTTTAATGCATTGTCGGATATGATCTTTTCAGGCATTCCATACCGACAAATGATCTCT
196 TGTTCAAGTTTAATGCATTGTCGGATATGATCTTTTCAGGCATTCCATACCGACAAATGATCTCT
70095792 TTCTTTAAGAATTGACTAACAGCTGACTTAGTAACATTCGCATAAGAAGCGGCCTCTACCCATTT
261 TTCTTTAAGAATTGACTAACAGCTGACTTAGTAACATTCGCATAAGAAGCGGCCTCTACCCATTT
70095857 TGTAAAG
326 TGTAAAG
70095864 T
1 T
70095865 AGTCAATTAC
Statistics
Matches: 332, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
332 332 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (332 bp):
TGACAGATGCTCGATAAGCCAGGAGTGCAAACGGTAACTTCTTATGCCAATCTCTATAGGTCTCA
GTCATCTTCCTCACTATTTTCTTAATGTTCTTGTTGGTGGCCTCCACTACCCCATTCATTTTTGG
ACGATAAGGAGAAGAATTGTGATGCTTGATCTTGAACTGGTCGCAAACCTCTGTTATTGTTTTGT
TGTTCAAGTTTAATGCATTGTCGGATATGATCTTTTCAGGCATTCCATACCGACAAATGATCTCT
TTCTTTAAGAATTGACTAACAGCTGACTTAGTAACATTCGCATAAGAAGCGGCCTCTACCCATTT
TGTAAAG
Found at i:70107510 original size:47 final size:47
Alignment explanation
Indices: 70107441--70107532 Score: 157
Period size: 47 Copynumber: 2.0 Consensus size: 47
70107431 TCAATAGCTT
70107441 CTTCATTCGCCTCGACATAAGGGGCCTTGCTAGTGACTACTGCTACA
1 CTTCATTCGCCTCGACATAAGGGGCCTTGCTAGTGACTACTGCTACA
* * *
70107488 CTTCATTTGCCTCGACATAAGGGGTCTTGCTAGTGACTGCTGCTA
1 CTTCATTCGCCTCGACATAAGGGGCCTTGCTAGTGACTACTGCTA
70107533 TAATGTCTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (47 bp):
CTTCATTCGCCTCGACATAAGGGGCCTTGCTAGTGACTACTGCTACA
Found at i:70138115 original size:19 final size:19
Alignment explanation
Indices: 70138079--70138117 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
70138069 GCTGGAGCTA
*
70138079 GAAGCAGCACGAGGAGCAC
1 GAAGCAGCACGAGCAGCAC
* *
70138098 GAAGCAGGACGTGCAGCAC
1 GAAGCAGCACGAGCAGCAC
70138117 G
1 G
70138118 CGATGGGAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.26, G:0.38, T:0.03
Consensus pattern (19 bp):
GAAGCAGCACGAGCAGCAC
Found at i:70138631 original size:30 final size:30
Alignment explanation
Indices: 70138574--70138632 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
70138564 GCCTTTTGAA
* * *
70138574 AATATTTACAAAAAGGGGCATCTAATTTTT
1 AATATTTACAAAAAGGAGCACCAAATTTTT
70138604 AATATTTACAAAAA-GAGCAACCAAATTTT
1 AATATTTACAAAAAGGAGC-ACCAAATTTT
70138633 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGGAGCACCAAATTTTT
Found at i:70146173 original size:10 final size:10
Alignment explanation
Indices: 70146146--70146175 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
70146136 TTTTAAATCT
*
70146146 ATCAAAAATA
1 ATCAAAATTA
70146156 ATCAAAATTA
1 ATCAAAATTA
70146166 ATCAAAATTA
1 ATCAAAATTA
70146176 CTTGTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:70147642 original size:46 final size:45
Alignment explanation
Indices: 70147591--70147678 Score: 106
Period size: 45 Copynumber: 1.9 Consensus size: 45
70147581 TGAGCCATGT
* *
70147591 AACAGGATGCTTATTCGAGCTAAACAGGAAACTCCT-AAGAGTTTAG
1 AACAGGAAGCTCATT-GAGCTAAACAGGAAACT-CTGAAGAGTTTAG
* * *
70147637 AACAGGAAGCTCATTGGGCTTAACAGGTAACTCTGAAGAGTT
1 AACAGGAAGCTCATTGAGCTAAACAGGAAACTCTGAAGAGTT
70147679 ATTAACAGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
44 2 0.06
45 21 0.58
46 13 0.36
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (45 bp):
AACAGGAAGCTCATTGAGCTAAACAGGAAACTCTGAAGAGTTTAG
Found at i:70148385 original size:367 final size:367
Alignment explanation
Indices: 70147712--70148812 Score: 2069
Period size: 367 Copynumber: 3.0 Consensus size: 367
70147702 ATAATAGGGA
70147712 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
1 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
* * * * *
70147777 TTGTGTCTGCAGTAAATGCTGGACCACAATCGATCAATTCATGTAA-AAGGACGCTCACAAAGAG
66 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAA-GATGCTCACAAAGAG
70147841 CTATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACA
130 CTATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACA
70147906 GGATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGG
195 GGATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGG
70147971 ACTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAAT
260 ACTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAAT
70148036 TATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
325 TATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
70148079 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
1 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
* * *
70148144 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATTGATTTATGTAACAAGATTCTCACAAAGAGC
66 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
70148209 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
131 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
70148274 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
196 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
70148339 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
261 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
70148404 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
326 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
*
70148446 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACAAAGAGCTACCT
1 TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
*
70148511 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAGGATGCTCACAAAGAGC
66 TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
70148576 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
131 TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
*
70148641 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCTGAGCTATAATGTCCACAACATATGCAGGA
196 GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
* *
70148706 CTATAATCAATATGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGAGACTTATCAATT
261 CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
70148771 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
326 ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
70148813 ACTTATGCAA
Statistics
Matches: 717, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
367 715 1.00
368 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.25
Consensus pattern (367 bp):
TTTCAAGCGAGCCATGTCAGAAAGATCATAAGAGCCTATATCAGCACACTCACGAAGAGCTACCT
TTGTGTCCGCAGTAAATGCTGGATCACAACCGATCGATTCATGTAACAAGATGCTCACAAAGAGC
TATGGTAGTGCGCAACACATGCAGAATCACTACCAATCAGGATACTCGCAGGAACTATATAACAG
GATGCTCGAGAGGGCTTATAACAGGATTGCTCGTCCGAGCTATAATGTCCACAACATATGCAGGA
CTATAATCAATACGGGAAAATACAATATCCATTCCATTTCATTCTTCAAAAGGGACTTATCAATT
ATCGAACAATATCGGGTATGTGATTAATTTCATACATTAAAC
Found at i:70152260 original size:9 final size:9
Alignment explanation
Indices: 70152246--70152273 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
70152236 CGATCATGAT
70152246 ATTTCTTTG
1 ATTTCTTTG
70152255 ATTTCTTTG
1 ATTTCTTTG
70152264 ATTTCTTTG
1 ATTTCTTTG
70152273 A
1 A
70152274 AGCAGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.14, C:0.11, G:0.11, T:0.64
Consensus pattern (9 bp):
ATTTCTTTG
Found at i:70158644 original size:48 final size:48
Alignment explanation
Indices: 70158579--70158809 Score: 174
Period size: 48 Copynumber: 4.9 Consensus size: 48
70158569 TAAGGTAGGG
* * *
70158579 TGCCAATACCATATCCCAGATATGGACTTACATGGGACCACATAACGA
1 TGCCAATACCATGTCCCAGACATGGTCTTACATGGGACCACATAACGA
* * * *
70158627 TGCCAATGCCATGTCCCAGACATGGAT-TTACATGGGTCACACATATCAA
1 TGCCAATACCATGTCCCAGACATGG-TCTTACATGGGAC-CACATAACGA
* * * * * * * * *
70158676 AGCCGAT---A-G-GCCA-ACTATGGTCTTACACGATG-TCTCATTATGA
1 TGCCAATACCATGTCCCAGAC-ATGGTCTTACATG-GGACCACATAACGA
* * *
70158719 TGCCAATGA-CATGTCTCAGACATGGTCTTACATGGGATCACATAATGA
1 TGCCAAT-ACCATGTCCCAGACATGGTCTTACATGGGACCACATAACGA
*
70158767 TGCCAAAACCATGTCCCAGACATGGTCTTACATGGGACCACAT
1 TGCCAATACCATGTCCCAGACATGGTCTTACATGGGACCACAT
70158810 GTCACTGCCG
Statistics
Matches: 141, Mismatches: 29, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
43 13 0.09
44 13 0.09
45 2 0.01
46 2 0.01
47 3 0.02
48 93 0.66
49 15 0.11
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (48 bp):
TGCCAATACCATGTCCCAGACATGGTCTTACATGGGACCACATAACGA
Found at i:70158832 original size:48 final size:48
Alignment explanation
Indices: 70158579--70158844 Score: 142
Period size: 48 Copynumber: 5.6 Consensus size: 48
70158569 TAAGGTAGGG
* * *
70158579 TGCCAATACCATATCCCAGATATGGACTTACATGGGACCACATAA-CGA
1 TGCCAAAACCATATCCCAGACATGGTCTTACATGGGACCACATAATC-A
** * * *
70158627 TGCCAATGCCATGTCCCAGACATGGAT-TTACATGGG-TCACA-CAT-A
1 TGCCAAAACCATATCCCAGACATGG-TCTTACATGGGACCACATAATCA
* ** * * * * * *
70158672 T--CAAAGCCGATAGGCCA-ACTATGGTCTTACACGATG-TCTCATTATGA
1 TGCCAAAACC-ATATCCCAGAC-ATGGTCTTACATG-GGACCACATAATCA
* * * * *
70158719 TGCCAATGA-CATGTCTCAGACATGGTCTTACATGGGATCACATAATGA
1 TGCCAA-AACCATATCCCAGACATGGTCTTACATGGGACCACATAATCA
* *
70158767 TGCCAAAACCATGTCCCAGACATGGTCTTACATGGGACCACAT-GTCA
1 TGCCAAAACCATATCCCAGACATGGTCTTACATGGGACCACATAATCA
* *
70158814 CTGCCGAAGCCATATCCCA-ACTATGGTCTTA
1 -TGCCAAAACCATATCCCAGAC-ATGGTCTTA
70158845 TACGGGAGCT
Statistics
Matches: 170, Mismatches: 32, Indels: 32
0.73 0.14 0.14
Matches are distributed among these distances:
43 9 0.05
44 15 0.09
45 7 0.04
46 3 0.02
47 12 0.07
48 118 0.69
49 6 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (48 bp):
TGCCAAAACCATATCCCAGACATGGTCTTACATGGGACCACATAATCA
Found at i:70163158 original size:3 final size:3
Alignment explanation
Indices: 70163150--70163985 Score: 1672
Period size: 3 Copynumber: 278.7 Consensus size: 3
70163140 ATTTTCATAA
70163150 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163198 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163246 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163294 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163342 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163390 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163438 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163486 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163534 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163582 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163630 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163678 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163726 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163774 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163822 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163870 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163918 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
70163966 AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AA
70163986 AGAATTTTTT
Statistics
Matches: 833, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 833 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:70165623 original size:3 final size:3
Alignment explanation
Indices: 70165615--70165647 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
70165605 CAATCACTCT
*
70165615 GAA GAA GAA GAA GAA TAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
70165648 TTACCATTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:70167795 original size:21 final size:21
Alignment explanation
Indices: 70167771--70167812 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
70167761 TTATAATTAT
70167771 GATTGATTGAATTAAAAAAAA
1 GATTGATTGAATTAAAAAAAA
70167792 GATTGATTGAATTAAAAAAAA
1 GATTGATTGAATTAAAAAAAA
70167813 AAATAGAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (21 bp):
GATTGATTGAATTAAAAAAAA
Found at i:70169741 original size:30 final size:29
Alignment explanation
Indices: 70169718--70169798 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 29
70169708 AAATTTAATC
*
70169718 AAATTAAAATTTCATATATAAAATTATATA
1 AAATCAAAATTT-ATATATAAAATTATATA
* * *
70169748 AAATCAAAGTTTATATATAATATTAATTATT
1 AAATCAAAATTTATATATAAAATT-A-TATA
**
70169779 GTATCAAAATTTATATATAA
1 AAATCAAAATTTATATATAA
70169799 TTTTGATATT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 11 0.26
30 11 0.26
31 20 0.48
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (29 bp):
AAATCAAAATTTATATATAAAATTATATA
Found at i:70170120 original size:3 final size:3
Alignment explanation
Indices: 70170112--70170136 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70170102 AGTTTAATTG
70170112 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
70170137 TAGAGAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:70171238 original size:30 final size:30
Alignment explanation
Indices: 70171202--70171268 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
70171192 CTAACCTTTG
70171202 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
70171232 CCACCACCAACTTCACTAGCCACATTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
70171262 CCACCAC
1 CCACCAC
70171269 TACTTGTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.27, C:0.49, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:70171762 original size:23 final size:23
Alignment explanation
Indices: 70171725--70171852 Score: 84
Period size: 23 Copynumber: 5.5 Consensus size: 23
70171715 CTTTTTTTGT
*
70171725 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
70171748 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
70171770 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
70171793 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATACTA
* *
70171816 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
70171841 TATTATTTATAT
1 TATTATATATAT
70171853 ATATATTTTT
Statistics
Matches: 79, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 17 0.22
23 29 0.37
24 8 0.10
25 20 0.25
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:70171828 original size:25 final size:26
Alignment explanation
Indices: 70171800--70171939 Score: 80
Period size: 25 Copynumber: 5.5 Consensus size: 26
70171790 CTATATTACG
*
70171800 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
70171825 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
** *
70171850 TATATATATTTTTTAATGTTATCTTATGTA
1 TATATATA----TTAATACTATATTATGTA
70171880 TATAT-T-TTAAT--TATATTATGTA
1 TATATATATTAATACTATATTATGTA
* * * *
70171902 TGTAT-TTTTTACACTATATTATGTA
1 TATATATATTAATACTATATTATGTA
* *
70171927 CATAT-TTTTAATA
1 TATATATATTAATA
70171940 TTATCACGTA
Statistics
Matches: 90, Mismatches: 16, Indels: 18
0.73 0.13 0.15
Matches are distributed among these distances:
22 15 0.17
23 3 0.03
24 7 0.08
25 45 0.50
29 1 0.01
30 19 0.21
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:70171848 original size:30 final size:27
Alignment explanation
Indices: 70171817--70171906 Score: 96
Period size: 26 Copynumber: 3.3 Consensus size: 27
70171807 ATTATACTAT
70171817 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATA-TATATTA
* * *
70171846 TTTATATATATATTTT-TTA-ATGTTA
1 TTTATGTATATATTTTAATATATATTA
70171871 TCTTATGTATATATTTTAAT-TATATTA
1 T-TTATGTATATATTTTAATATATATTA
*
70171898 TGTATGTAT
1 TTTATGTAT
70171907 TTTTTACACT
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
25 6 0.12
26 21 0.41
27 9 0.18
28 3 0.06
29 12 0.24
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (27 bp):
TTTATGTATATATTTTAATATATATTA
Found at i:70171881 original size:26 final size:23
Alignment explanation
Indices: 70171842--70171960 Score: 84
Period size: 24 Copynumber: 5.0 Consensus size: 23
70171832 TTAATACTAT
*
70171842 ATTATTTATATATATATTTTTTA
1 ATTATTTATGTATATATTTTTTA
70171865 ATGTTATCTTATGTATATA--TTTTA
1 A--TTAT-TTATGTATATATTTTTTA
*
70171889 ATTATATTATGTATGTATTTTTTA
1 ATTAT-TTATGTATATATTTTTTA
* *
70171913 CACTATATTATGTACATA-TTTTTA
1 -ATTAT-TTATGTATATATTTTTTA
* *
70171937 A-TATTATCACGTATTTATTTTTTA
1 ATTATT-T-ATGTATATATTTTTTA
70171961 TATATGTACA
Statistics
Matches: 78, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
21 1 0.01
22 18 0.23
23 8 0.10
24 23 0.29
25 18 0.23
26 10 0.13
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (23 bp):
ATTATTTATGTATATATTTTTTA
Found at i:70171887 original size:24 final size:22
Alignment explanation
Indices: 70171854--70171975 Score: 72
Period size: 24 Copynumber: 5.4 Consensus size: 22
70171844 TATTTATATA
* *
70171854 TATATTTTTTAATGTTATCTTATG
1 TATATATTTTAA--TTATATTATG
70171878 TATATATTTTAATTATATTATG
1 TATATATTTTAATTATATTATG
* *
70171900 TATGTATTTTTTACACTATATTATG
1 TA--TATATTTTA-ATTATATTATG
* * *
70171925 TACATATTTTTAA-TATTATCACG
1 TATATA-TTTTAATTA-TATTATG
*
70171948 TATTTATTTT--TTATA-TATG
1 TATATATTTTAATTATATTATG
*
70171967 TACATATTT
1 TATATATTT
70171976 ATGTAGTATT
Statistics
Matches: 78, Mismatches: 14, Indels: 17
0.72 0.13 0.16
Matches are distributed among these distances:
19 9 0.12
20 2 0.03
21 2 0.03
22 17 0.22
23 12 0.15
24 24 0.31
25 12 0.15
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TATATATTTTAATTATATTATG
Found at i:70171942 original size:20 final size:20
Alignment explanation
Indices: 70171917--70171975 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
70171907 TTTTTACACT
70171917 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
70171937 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
70171960 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
70171976 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:70172114 original size:16 final size:15
Alignment explanation
Indices: 70172090--70172124 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
70172080 TAATTATTAT
70172090 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
70172106 TATTTTAATATTTTA
1 TATTCTAATATTTTA
70172121 TATT
1 TATT
70172125 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:70178197 original size:44 final size:44
Alignment explanation
Indices: 70178147--70178255 Score: 175
Period size: 44 Copynumber: 2.5 Consensus size: 44
70178137 AAAAAAAGGT
70178147 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTAATTAACAAAAAA
1 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTAATTAACAAAAAA
* *
70178191 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACACAAAA
1 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTAATTAACAAAAAA
*
70178235 GAT-TAGGATGAAAACCCGAAA
1 GATCAAGG-TGAAAACCCGAAA
70178256 GGACGTTCTA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 3 0.05
44 58 0.95
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.16
Consensus pattern (44 bp):
GATCAAGGTGAAAACCCGAAAAGGGCGTCTTAATTAACAAAAAA
Found at i:70179248 original size:73 final size:74
Alignment explanation
Indices: 70179128--70179266 Score: 244
Period size: 73 Copynumber: 1.9 Consensus size: 74
70179118 ATTTCCATTT
* *
70179128 TTTCAGTTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
70179193 CTGAGGTAA
66 CTGAGGTAA
*
70179202 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
70179266 C
66 C
70179267 CAAGATATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
73 45 0.73
74 17 0.27
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (74 bp):
TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
CTGAGGTAA
Found at i:70179283 original size:73 final size:73
Alignment explanation
Indices: 70179128--70179294 Score: 235
Period size: 73 Copynumber: 2.3 Consensus size: 73
70179118 ATTTCCATTT
* *
70179128 TTTCAGTTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
** *
70179193 CTGAGGTAA
65 CCAAGATAA
*
70179202 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
*
70179267 CAAGATAT
66 CAAGATAA
* * *
70179275 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
70179295 TTTCTGCTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
73 66 0.80
74 17 0.20
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
CAAGATAA
Found at i:70179296 original size:14 final size:13
Alignment explanation
Indices: 70179274--70179316 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
70179264 CGCCAAGATA
70179274 TTTTTAATTTCTG
1 TTTTTAATTTCTG
70179287 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
70179301 CTTTTAATTTCTG
1 TTTTTAATTTCTG
70179314 TTT
1 TTT
70179317 ATCAAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.14, C:0.12, G:0.07, T:0.67
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:70179383 original size:100 final size:101
Alignment explanation
Indices: 70179212--70179482 Score: 415
Period size: 100 Copynumber: 2.7 Consensus size: 101
70179202 TTTCAATTTA
* ** *
70179212 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCACGCCAAGATATTT
1 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
* ** *
70179277 TTAATTTCTGTTTTTCAATTTCTG-CTTTTAATTTC
66 TCAATTTCTGTTTTTCAATTTCTGCCTTACAAATTC
70179312 TG-TTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATT
1 TGCTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATT
*
70179376 TTCAATTTCTGTTTTTCAATTTTTGCCTTACAAATTC
65 TTCAATTTCTGTTTTTCAATTTCTGCCTTACAAATTC
*
70179413 TGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
1 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
70179476 TCAATTT
66 TCAATTT
70179483 TCATTTTTTT
Statistics
Matches: 158, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
99 64 0.41
100 79 0.50
101 12 0.08
102 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (101 bp):
TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
TCAATTTCTGTTTTTCAATTTCTGCCTTACAAATTC
Found at i:70179771 original size:75 final size:76
Alignment explanation
Indices: 70179506--70179764 Score: 359
Period size: 77 Copynumber: 3.5 Consensus size: 76
70179496 TTATGTTTCA
* * * *
70179506 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACA--CTAAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
** *
70179569 T-TTGTTTGTC
66 TCTACTTTATC
* *
70179579 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
70179642 TCTATTTTTATC
66 TCTA-CTTTATC
*
70179654 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
70179719 TCTACTTT-TC
66 TCTACTTTATC
*
70179729 AAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
70179765 TCTCGGGCCA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
71 42 0.25
73 14 0.08
74 1 0.01
75 42 0.25
76 3 0.02
77 64 0.39
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
TCTACTTTATC
Found at i:70180001 original size:416 final size:416
Alignment explanation
Indices: 70179421--70180183 Score: 1028
Period size: 416 Copynumber: 1.8 Consensus size: 416
70179411 TCTGCTTTTC
*
70179421 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACGCTGAGGTATTTTCAATTTTCA
* * *
70179486 TTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGAC
65 TATTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGAC
* **
70179551 ACTAAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
130 ACTAAGGTAATTTCAA-TTTTGATCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
**
70179616 CAGGACACGCTGAGATATTTTCAA-AT-T-CT-A-T-T-TTTATCAAAAAAATCAACTCATATTG
194 CAAAACACGCTGAGATATTTTCAATATCTGCTAACTATGTTTATC--AAAAATCAACTCATATTG
70179674 CGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTACTTTTCAAAAGAATCA
257 CGAGAGGTGAGTTGAGCCTC---ACACGCTGAGGTATTTTCAATTTCTACTTTTCAAAA-AATCA
70179739 ACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACATCAAGGTCCTTTCAAATTCTGTTTT
318 ACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACATCAAGGTCCTTTCAAATTCTGTTTT
70179804 TAATTTCCTTTTTTTTAATTTATGTGTTTCAAAA
383 TAATTTCCTTTTTTTTAATTTATGTGTTTCAAAA
* * * * *
70179838 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGATGTGTTTTCCA-TTTC-T
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCAT
* * *
70179900 ATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG
66 ATTTTCAATTTATGTTTCAA---AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAG
* * *
70179965 TCACATTGAGGTATTTTCAA-TTT-ATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
128 --ACACTAAGGTAATTTCAATTTTGATCATC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * * *
70180028 GCTTCAAAACCCGTTGAGGTATTTTCAATTTCTGCTCAATCTATGTTTTTCAAAAATCAACTCAT
190 GCCTCAAAACACGCTGAGATATTTTCAATATCTGCT-AA-CTATGTTTATCAAAAATCAACTCAT
* * **
70180093 ATTGCGAGAGGTGAGTTGAGCCTCACATGCTGAGGTGTTTTCAATTTCTGTTTTTCAAAAAATCA
253 ATTGCGAGAGGTGAGTTGAGCCTCACACGCTGAGGTATTTTCAATTTCTACTTTTCAAAAAATCA
70180158 ACTCATATTGCGAGAGGTGAGTTGAG
318 ACTCATATTGCGAGAGGTGAGTTGAG
70180184 CCTTGGCTTA
Statistics
Matches: 301, Mismatches: 30, Indels: 28
0.84 0.08 0.08
Matches are distributed among these distances:
413 17 0.06
414 4 0.01
415 19 0.06
416 98 0.33
417 36 0.12
418 16 0.05
419 33 0.11
420 32 0.11
421 1 0.00
423 39 0.13
424 1 0.00
425 5 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (416 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCAT
ATTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACA
CTAAGGTAATTTCAATTTTGATCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AAACACGCTGAGATATTTTCAATATCTGCTAACTATGTTTATCAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCACACGCTGAGGTATTTTCAATTTCTACTTTTCAAAAAATCAACTCATAT
TGCGAGAGGTGAGTTGAGTCTCGGGCCACACATCAAGGTCCTTTCAAATTCTGTTTTTAATTTCC
TTTTTTTTAATTTATGTGTTTCAAAA
Found at i:70180021 original size:71 final size:71
Alignment explanation
Indices: 70179921--70180058 Score: 222
Period size: 71 Copynumber: 1.9 Consensus size: 71
70179911 CTGTTTTAAT
**
70179921 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAAACACATTGAGGTATTTTCAAT
70179986 TTATCA
66 TTATCA
* * * *
70179992 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAAACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAAACACATTGAGGTATTTTCAAT
70180057 TT
66 TT
70180059 CTGCTCAATC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAAACACATTGAGGTATTTTCAAT
TTATCA
Found at i:70180152 original size:155 final size:155
Alignment explanation
Indices: 70179815--70180372 Score: 474
Period size: 155 Copynumber: 3.6 Consensus size: 155
70179805 AATTTCCTTT
* * * * *
70179815 TTTTTAATTTATGTGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC-TCAAG--
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAGAC
* * *
70179877 ACGCTGATGT-GTTTTCCATTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATT
66 ACGCTGAGGTAGTTTTCAATTTC---TGTCAA-TT-TG-TTT--TTC-AAAAATCAACTCATATT
* * *
70179941 GCGAGAGGTGAGTTGAACCTCA-AGTCACATTGAGGTA
122 GCGAGAGGTGAGTTGAGCCTCACA-T-GC--TGAGGTG
* ** *
70179978 TTTTCAA-TT-T-ATCATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAAAAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAGAC
* *
70180038 CCGTTGAGGTA-TTTTCAATTTCTGCTCAATCTATGTTTTTCAAAAATCAACTCATATTGCGAGA
66 ACGCTGAGGTAGTTTTCAATTTCTG-TCAAT-T-TGTTTTTCAAAAATCAACTCATATTGCGAGA
70180102 GGTGAGTTGAGCCTCACATGCTGAGGTG
128 GGTGAGTTGAGCCTCACATGCTGAGGTG
**
70180130 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TT
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--CAAG
* * *** *
70180193 ACATGCTGAGGTATTTTTCAATTTCTG----TTTG--TCAAAAAAATCAACTCATGTTGCGAGAG
64 ACACGCTGAGGTAGTTTTCAATTTCTGTCAATTTGTTTTTCAAAAATCAACTCATATTGCGAGAG
* *
70180252 GTGAGCTGAGCCTCGGGTCACACGCTGAGGTG
129 GTGAGTTGAG-C-C---TCACATGCTGAGGTG
* * * *
70180284 TTTTCAACTTCTGTTTTTCAAAAAAATCAAGTCATGTTGCGAGAGGTGAGTTGAGCCTT-AGGAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAGAC
*
70180348 ACGTTGAGGTAGTTTT-AATTTCTGT
66 ACGCTGAGGTAGTTTTCAATTTCTGT
70180373 TCATTAAAAA
Statistics
Matches: 334, Mismatches: 39, Indels: 54
0.78 0.09 0.13
Matches are distributed among these distances:
149 33 0.10
150 1 0.00
151 3 0.01
152 22 0.07
153 18 0.05
154 34 0.10
155 114 0.34
156 7 0.02
157 10 0.03
158 20 0.06
159 44 0.13
160 2 0.01
161 18 0.05
162 2 0.01
163 6 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (155 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAAGAC
ACGCTGAGGTAGTTTTCAATTTCTGTCAATTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCACATGCTGAGGTG
Found at i:70180251 original size:78 final size:75
Alignment explanation
Indices: 70180071--70180441 Score: 447
Period size: 77 Copynumber: 5.0 Consensus size: 75
70180061 GCTCAATCTA
*
70180071 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CACATGCTGAGGTGT
1 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCACACGCTGAGGTGT
70180131 TTTCAATTTC
66 TTTCAATTTC
*
70180141 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACATGCTGAGGT
1 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC--ACACGCTGAGGT
*
70180205 ATTTTTCAATTTC
64 -GTTTTCAATTTC
* * * *
70180218 TGTTTGTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGCTGAGCCTCGGGTCACACGCTGAGGT
1 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CACACGCTGAGGT
*
70180283 GTTTTCAACTTC
64 GTTTTCAATTTC
* * *
70180295 TGTTTTTCAAAAAAATCAAGTCATGTTGCGAGAGGTGAGTTGAGCCTTAGG-ACACGTTGAGGTA
1 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCACACGCTGAGGT-
70180359 GTTTT-AATTTC
64 GTTTTCAATTTC
* ** ** *
70180370 TGTTCATT--AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGGCACGCTGAGGTA
1 TGTT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCACACGCTGAGGTG
70180433 TTTTCAATT
65 TTTTCAATT
70180442 AATTTTTTTT
Statistics
Matches: 264, Mismatches: 22, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
70 8 0.03
71 36 0.14
72 1 0.00
73 6 0.02
74 50 0.19
75 20 0.08
76 19 0.07
77 74 0.28
78 47 0.18
79 2 0.01
80 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (75 bp):
TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCACACGCTGAGGTGT
TTTCAATTTC
Found at i:70180577 original size:87 final size:85
Alignment explanation
Indices: 70180379--70180677 Score: 296
Period size: 87 Copynumber: 3.4 Consensus size: 85
70180369 CTGTTCATTA
*
70180379 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGG--GCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCACACGCTGAGGTATTTTCAA--
* *
70180442 AATTTTTTTTTCAATTTATGCTTTTC
64 AA-TCTGTTTTCAATTT-TG--TTTC
* * * * *
70180468 AAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCACACACAGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCACACGCTGAGGTATTTTCAAAA
*
70180533 TCTGTTTTACAAATTTTGTTTG
66 TCTGTTTT-C-AATTTTGTTTC
* * ** * **
70180555 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCACACGCTGAGGTATTTTCAAAA
* * *
70180620 TCTGTTTTTAATGTCTAGTTTT
66 TCTGTTTTCAAT-T-TTGTTTC
* *
70180642 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAATGAGTTGAGC
70180678 TCAGGATCAC
Statistics
Matches: 176, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
85 3 0.02
86 1 0.01
87 72 0.41
88 35 0.20
89 43 0.24
90 5 0.03
91 17 0.10
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCACACGCTGAGGTATTTTCAAAA
TCTGTTTTCAATTTTGTTTC
Found at i:70181992 original size:16 final size:15
Alignment explanation
Indices: 70181968--70182002 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
70181958 TAATTATTAT
70181968 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
70181984 TATTTTAATATTTTA
1 TATTCTAATATTTTA
70181999 TATT
1 TATT
70182003 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:70186730 original size:12 final size:12
Alignment explanation
Indices: 70186715--70186752 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
70186705 AACCTAAACT
70186715 AAAAATGAAAAG
1 AAAAATGAAAAG
70186727 AAAAATG-AAAG
1 AAAAATGAAAAG
*
70186738 GAAAA-GAAAAG
1 AAAAATGAAAAG
70186749 AAAA
1 AAAA
70186753 CCTAACCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 1 0.04
11 15 0.65
12 7 0.30
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (12 bp):
AAAAATGAAAAG
Found at i:70190944 original size:52 final size:53
Alignment explanation
Indices: 70190882--70190981 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 53
70190872 TGTCTTCGAC
* * *
70190882 ATGGACTTACATGAATTATTCCTGTCTTCAATGCCATATATAT-ATATCTAAT
1 ATGGACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATGATATCTAAT
* ** *
70190934 ATGGGCTTACATGGCTCATTTCTGTCTCCAAAGCCATATATATGATAT
1 ATGGACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATGATAT
70190982 GGACTTACAT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 36 0.90
53 4 0.10
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (53 bp):
ATGGACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATGATATCTAAT
Found at i:70210828 original size:52 final size:51
Alignment explanation
Indices: 70210708--70210887 Score: 258
Period size: 52 Copynumber: 3.5 Consensus size: 51
70210698 AGTAACGACT
*
70210708 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
70210757 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
70210809 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATTGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA--GAAGATAGCTTTGGTC-A
* *
70210862 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
70210888 CGAGTATCCG
Statistics
Matches: 120, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
49 34 0.28
51 7 0.06
52 43 0.36
53 35 0.29
54 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:70214405 original size:27 final size:28
Alignment explanation
Indices: 70214353--70214406 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
70214343 AAAGAATAAA
*
70214353 TTTTTGTGTATTCACGAGTGTATATAGTT
1 TTTTTGTGCATTCACGAGTG-ATATAGTT
*
70214382 TTTTTTTGCATTCACGAGTG-TATAG
1 TTTTTGTGCATTCACGAGTGATATAG
70214407 ACAGTCAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
29 18 0.78
ACGTcount: A:0.20, C:0.09, G:0.20, T:0.50
Consensus pattern (28 bp):
TTTTTGTGCATTCACGAGTGATATAGTT
Found at i:70225427 original size:11 final size:11
Alignment explanation
Indices: 70225406--70225434 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
70225396 TCAAAAACGT
70225406 AAAAATC-ATC
1 AAAAATCAATC
70225416 AAAAATCAATC
1 AAAAATCAATC
70225427 AAAAATCA
1 AAAAATCA
70225435 TACCTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATCAATC
Found at i:70228932 original size:42 final size:42
Alignment explanation
Indices: 70228885--70229039 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
70228875 TATCGTACCA
* * * **
70228885 ATGCCATATCCCAGATATGTTCTTACATGTAATCTCATGTCC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
* * *
70228927 ATGCCAATAGCCCAGCTATGTTCTTACACG-AAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATTG
* *
70228970 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
*
70229012 ATGCCATATCCCAAATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
70229040 ATAGTCTTAG
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 63 0.65
43 34 0.35
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
Found at i:70234084 original size:46 final size:46
Alignment explanation
Indices: 70233989--70234158 Score: 147
Period size: 46 Copynumber: 3.7 Consensus size: 46
70233979 CTTGTAGCCA
* *
70233989 ATGCATGTCCCAAACATGTCTTACACT-G-GCTTACGTCTCGAA-GCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCACTTA--TCTC-AATGCTG
70234035 ATGCATGTCCCAGACATGTCTTACACTAGCACTTATCTCAATG-TCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCACTTATCTCAATGCT-G
* * * *
70234081 ATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCA--T-AAGGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTTATCTCAA--T-GCTG
*
70234129 ATGCATGTCCCAGAAATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
70234159 TCACAATAGC
Statistics
Matches: 105, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
45 5 0.05
46 48 0.46
47 27 0.26
48 24 0.23
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACTTATCTCAATGCTG
Found at i:70234153 original size:140 final size:141
Alignment explanation
Indices: 70233897--70234155 Score: 328
Period size: 140 Copynumber: 1.8 Consensus size: 141
70233887 GTGTTAATGC
* **
70233897 CATGTCCCAGACATGCTCTTACACAAGCTCTATCATATCTGTGCCGATGCCATGTCCCAGACAGG
1 CATGTCCCAGACATGCTCTTACACAAGCACTATCATATCAATGCCGATGCCATGTCCCAGACAGG
***
70233962 GTCTTACACTGCCACATCTTGTAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCT
66 GTCTTACACTGCCACATAAGGTAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCT
70234027 CGAAGCTGATG
131 CGAAGCTGATG
* * * * *
70234038 CATGTCCCAGACATG-TCTTACACTAGCACT-T-ATCTCAATGTCGATGCCATGTTCCAGACATG
1 CATGTCCCAGACATGCTCTTACACAAGCACTATCATATCAATGCCGATGCCATGTCCCAGACAGG
* * **
70234100 GTCTTACACTGGCTCTCATAAGGTGGCTGATGCATGTCCCAGAA-ATGTCTTACACT
66 GTCTTACACT-GC-CACATAAGGTAGCCAATGCATGTCCCA-AACATGTCTTACACT
70234156 AGCTCACAAT
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
138 35 0.35
139 3 0.03
140 45 0.45
141 17 0.17
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
CATGTCCCAGACATGCTCTTACACAAGCACTATCATATCAATGCCGATGCCATGTCCCAGACAGG
GTCTTACACTGCCACATAAGGTAGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCT
CGAAGCTGATG
Found at i:70236215 original size:67 final size:67
Alignment explanation
Indices: 70236136--70236271 Score: 204
Period size: 67 Copynumber: 2.0 Consensus size: 67
70236126 AACATGTCTT
* *
70236136 CTAAAATCTAAATCACTCTTTCTAATT-GCCAGTCGGTTTGC-GGATGGAATGTCGTGCTAAAAC
1 CTAAAATCTAAATCACTCTTTCCAATTGGCCA-TCGGTTTGCAGG-TGAAATGTCGTGCTAAAAC
70236199 TAAA
64 TAAA
* *
70236203 CTAAAATCTAAATCACTCTTTCCGATTGGCCATCGGTTTGCAGGTGAAATGTCGTGCTAAAACTC
1 CTAAAATCTAAATCACTCTTTCCAATTGGCCATCGGTTTGCAGGTGAAATGTCGTGCTAAAACTA
70236268 AA
66 AA
70236270 CT
1 CT
70236272 TTTTCCCCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
67 57 0.90
68 6 0.10
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (67 bp):
CTAAAATCTAAATCACTCTTTCCAATTGGCCATCGGTTTGCAGGTGAAATGTCGTGCTAAAACTA
AA
Found at i:70241953 original size:19 final size:19
Alignment explanation
Indices: 70241930--70241975 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
70241920 TTTATTTAGG
70241930 TAAATAAAACTTATCTATCC
1 TAAATAAAACTTATCTA-CC
* *
70241950 -AAATAAGATTTATCTACC
1 TAAATAAAACTTATCTACC
70241968 TAAATAAA
1 TAAATAAA
70241976 TTTAAAACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAATAAAACTTATCTACC
Found at i:70250091 original size:15 final size:16
Alignment explanation
Indices: 70250071--70250100 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
70250061 AAGATCTTAA
70250071 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
70250086 AATCATAACCTTACT
1 AATCATAACCTTACT
70250101 GAGGGCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:70250381 original size:42 final size:42
Alignment explanation
Indices: 70250272--70250433 Score: 148
Period size: 42 Copynumber: 3.8 Consensus size: 42
70250262 TATCGTACCA
* * * * *
70250272 ATGCCATATCCCAGATAT-GATCTTATATGTAA-TCTCGTGTCA
1 ATGCCATATCCCAGATATAG-TCTTACACG-AAGTCTCATATCG
* *
70250314 ATGCCAATAGCCCAGCTATAGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATAGTCTTACACGAAGTCTCATATCG
* * * *
70250357 ATGCCATATCCCAGATATGGTCTTACATGTAGTCTCATATTG
1 ATGCCATATCCCAGATATAGTCTTACACGAAGTCTCATATCG
* * * *
70250399 ATGCCATATCCTAGATCTAGTCTTCCACGTAGTCT
1 ATGCCATATCCCAGATATAGTCTTACACGAAGTCT
70250434 TAGTAACCCT
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 68 0.69
43 30 0.30
44 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATAGTCTTACACGAAGTCTCATATCG
Found at i:70251547 original size:19 final size:20
Alignment explanation
Indices: 70251523--70251560 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70251513 GGTACCACCA
70251523 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70251542 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70251561 ACCAACTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70256899 original size:64 final size:60
Alignment explanation
Indices: 70256796--70256921 Score: 207
Period size: 64 Copynumber: 2.0 Consensus size: 60
70256786 CTCTGCACGG
70256796 ACCAAAATGATTTCTACCACACCGCTGGCACTCGAGTTTAACAAATCTCGAGTTCCCTAC
1 ACCAAAATGATTTCTACCACACCGCTGGCACTCGAGTTTAACAAATCTCGAGTTCCCTAC
*
70256856 NNNNACCAAAATGATTTCTACCACACCGCTGGCACTCGGGTTTAACAAATCTCGAGTTCCCTAC
1 ----ACCAAAATGATTTCTACCACACCGCTGGCACTCGAGTTTAACAAATCTCGAGTTCCCTAC
70256920 AC
1 AC
70256922 TGGCTGCAGA
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
60 2 0.03
64 59 0.97
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.24
Consensus pattern (60 bp):
ACCAAAATGATTTCTACCACACCGCTGGCACTCGAGTTTAACAAATCTCGAGTTCCCTAC
Found at i:70259105 original size:19 final size:20
Alignment explanation
Indices: 70259081--70259118 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70259071 GGTACCACCA
70259081 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70259100 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70259119 ACCAACTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70259458 original size:93 final size:93
Alignment explanation
Indices: 70259348--70259518 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
70259338 GCCCTTAAGT
* *
70259348 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
70259413 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
70259441 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
70259506 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70259519 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70259515 original size:46 final size:46
Alignment explanation
Indices: 70259343--70259515 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
70259333 AACCCGCCCT
* * * *
70259343 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
70259389 TAAATGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
70259437 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
70259482 TAAGTGAACTCGGATTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70259516 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:70259972 original size:30 final size:30
Alignment explanation
Indices: 70259938--70259994 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
70259928 ATTTAATACG
70259938 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
70259968 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTAAAAAAATTACACTTTTGCCC
70259995 ATAGGCTCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:70260473 original size:85 final size:85
Alignment explanation
Indices: 70260330--70260499 Score: 331
Period size: 85 Copynumber: 2.0 Consensus size: 85
70260320 ATTAAAAACA
*
70260330 GGGCTTGGAATCGCTTACTATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTT
1 GGGCTTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTT
70260395 GAAATTTCGGCCTAATGAAG
66 GAAATTTCGGCCTAATGAAG
70260415 GGGCTTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTT
1 GGGCTTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTT
70260480 GAAATTTCGGCCTAATGAAG
66 GAAATTTCGGCCTAATGAAG
70260500 ATGGACAAAA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (85 bp):
GGGCTTGGAATCACTTACTATGGAGCTTGGAAGCTTGAAACAAACCCTAGCTATGGAGAACCCTT
GAAATTTCGGCCTAATGAAG
Found at i:70267641 original size:220 final size:225
Alignment explanation
Indices: 70267233--70267680 Score: 683
Period size: 220 Copynumber: 2.0 Consensus size: 225
70267223 ATATGTTAAT
70267233 AATGTCAAAAAGAAAAAGAAAAGAAAAAAAGCCATGACACTTGTCATAAAAGGAAGGCTTAGGGC
1 AATGTCAAAAAGAAAAAG-AAAGAAAAAAAGCCATGACACTTGTCATAAAAGGAAGGCTTAGGGC
* * * *
70267298 TTTCTTTTTACGTATAGCAGTGTCGATTTTAAACTGATCTAAATGATATATATATTTGTTACAAT
65 TTTCTTTTTACATATAGCAATGTCGATTTTAAACTGATCTAAAT-ATATATATATATATTACAAT
* * *
70267363 TAATCAATATATAATAAGACATATCGTACTCTTTAGGAGAGAATTTAAGTTTAAATTTTAGAGAC
129 TAATCAATATATAATAAAACATATCGTACTCTTTAGGAAAGAATTTAAGTTCAAATTTTAGAGAC
* * *
70267428 GA-ATTGTTGTGAGATATAACTATGAACCATG
194 GATATTGTTATGAGAGACAACTATGAACCATG
* *
70267459 AATG-CAAAAAGAAAAAG-AA-AAAAAATGCCATGACACTTGTCATAAAAGGAAGGCTT-GGGGT
1 AATGTCAAAAAGAAAAAGAAAGAAAAAAAGCCATGACACTTGTCATAAAAGGAAGGCTTAGGGCT
*
70267520 CTTCTTTTTACATATAGCAATGTCGATTTTGAACTGATCTAAAT-TATATATATATATTACAATT
66 -TTCTTTTTACATATAGCAATGTCGATTTTAAACTGATCTAAATATATATATATATATTACAATT
* *
70267584 AATCAATATATAATAAAACATATTGTACTTTTTAGGAAAGAATTTAAGTTCAAATTTTAGAGACG
130 AATCAATATATAATAAAACATATCGTACTCTTTAGGAAAGAATTTAAGTTCAAATTTTAGAGACG
*
70267649 ATATTGTTATGAGAGACAACTATGAACTATG
195 ATATTGTTATGAGAGACAACTATGAACCATG
70267680 A
1 A
70267681 GTGCGATTCA
Statistics
Matches: 204, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
220 79 0.39
221 30 0.15
222 76 0.37
223 2 0.01
225 13 0.06
226 4 0.02
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (225 bp):
AATGTCAAAAAGAAAAAGAAAGAAAAAAAGCCATGACACTTGTCATAAAAGGAAGGCTTAGGGCT
TTCTTTTTACATATAGCAATGTCGATTTTAAACTGATCTAAATATATATATATATATTACAATTA
ATCAATATATAATAAAACATATCGTACTCTTTAGGAAAGAATTTAAGTTCAAATTTTAGAGACGA
TATTGTTATGAGAGACAACTATGAACCATG
Found at i:70271018 original size:21 final size:21
Alignment explanation
Indices: 70270992--70271051 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
70270982 AAAATTGATG
70270992 TTGTTTTGCTACTATTTTTCA
1 TTGTTTTGCTACTATTTTTCA
70271013 TTGTTTTGCTACTATTTTTCA
1 TTGTTTTGCTACTATTTTTCA
*
70271034 TTGTTTTGTTACTATTTT
1 TTGTTTTGCTACTATTTT
70271052 GTTGTTATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.13, C:0.12, G:0.10, T:0.65
Consensus pattern (21 bp):
TTGTTTTGCTACTATTTTTCA
Found at i:70273279 original size:8 final size:8
Alignment explanation
Indices: 70273268--70273292 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
70273258 ATATAATATT
70273268 TTTTAAAA
1 TTTTAAAA
70273276 TTTTAAAA
1 TTTTAAAA
70273284 TTTTAAAA
1 TTTTAAAA
70273292 T
1 T
70273293 AATACATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:70274759 original size:393 final size:395
Alignment explanation
Indices: 70274033--70274801 Score: 1211
Period size: 393 Copynumber: 2.0 Consensus size: 395
70274023 TTCTTCCAGC
* **
70274033 TGTAAGAGACCTTAATAATTTCCTCCAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCTGA
1 TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCCAA
* * * * *
70274098 TTCTTCCAAATTTGCCGAAGAAATTAAACCAAATAAACAGGCCCATATTGAACCTTTTGTGCTAT
66 TTCTTCCAAATTCGCCAAAGAAATTAAACCAAATAAACAGGCCCATACTGAACCTCTCGTGCTAT
* * *
70274163 TATCTGACAGGTCACGAAGATTAGAGAGTAACCATTTTGATAGATTACCATTGAAGAACCATCAA
131 TATCCGACAGGTCACGAAGATTAGAGAGTAACCATTCTGATAGACTACCATTGAAGAACCATCAA
*
70274228 TGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGTGAACGAGCAATCTCTAAGGACATG
196 TGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGTGAACGAGCAATCTCTAAAGACATG
* *
70274293 CAAAGCATCCTCAGTATTATAACCACATAAGTGACATGACTTTTCTTGTCCAATCCCTCTCCGGA
261 CAAAGCATCCTCAGTATTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCAGA
*
70274358 TTCTTTTAGAGTTAGTTAATAGTCTTT-TTTAAAGACCAACCAGATGAACTGTCCAATCCCTCTC
326 CTCTTTTAGAGTTAGTTAATAGTCTTTATTTAAAGACCAACCAGATGAACTGTCCAATCCCTCTC
70274422 CCAAA
391 CCAAA
* *
70274427 TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGCTTTTCCTTGGAAGATATTCAAGTTCCAA
1 TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCCAA
* ** * *
70274492 TTCTTTCAAATTCGCCAAAG-AATTAAACTGAA-GAACTAGGCCTATACTGAACCTCTCGTGCTA
66 TTCTTCCAAATTCGCCAAAGAAATTAAACCAAATAAAC-AGGCCCATACTGAACCTCTCGTGCTA
*** * * * * *
70274555 TTATCCGTTTGTTCACGCAGATTAGAGAGTAACCATTCTGATAGGCTACCATTGAAGAACCGTCT
130 TTATCCGACAGGTCACGAAGATTAGAGAGTAACCATTCTGATAGACTACCATTGAAGAACCATCA
* *
70274620 ATGTTGATTAGAAGGGATGACTTGATTCTAAATATCCTTCGTGAACGGGCAATCTCTAAAGACAT
195 ATGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGTGAACGAGCAATCTCTAAAGACAT
70274685 GCAAAGCATCCTCAGTATTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCAG
260 GCAAAGCATCCTCAGTATTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCAG
*
70274750 ACTCTTTTAGAGTTAGTTAATAGTTTTTATTTAAAGACCAACCAGATGAACT
325 ACTCTTTTAGAGTTAGTTAATAGTCTTTATTTAAAGACCAACCAGATGAACT
70274802 ATTTGACTCT
Statistics
Matches: 340, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
392 3 0.01
393 237 0.70
394 100 0.29
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (395 bp):
TGTAAGAGACCTTAATAATTTCCTCAAGATTCATAGATTTCCCTTGGAAGATATTCAAGTTCCAA
TTCTTCCAAATTCGCCAAAGAAATTAAACCAAATAAACAGGCCCATACTGAACCTCTCGTGCTAT
TATCCGACAGGTCACGAAGATTAGAGAGTAACCATTCTGATAGACTACCATTGAAGAACCATCAA
TGTTGATTAGAAGGGATGACTTGATTCCAAATATCCTTCGTGAACGAGCAATCTCTAAAGACATG
CAAAGCATCCTCAGTATTATAACCACATAAGTGACATGACTCTTCTTGTCCAATCCCTCTCCAGA
CTCTTTTAGAGTTAGTTAATAGTCTTTATTTAAAGACCAACCAGATGAACTGTCCAATCCCTCTC
CCAAA
Found at i:70277054 original size:20 final size:20
Alignment explanation
Indices: 70276997--70277055 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
70276987 CGGGGCTAAT
70276997 TTAAAAATGATTTAAAGATCCA
1 TTAAAAAT-ATTTAAA-ATCCA
**
70277019 TTAAAAATATGGAAAATACC-
1 TTAAAAATATTTAAAAT-CCA
*
70277039 TTTAAAATATTTAAAAT
1 TTAAAAATATTTAAAAT
70277056 TCCCATAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 16 0.52
21 7 0.23
22 8 0.26
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.34
Consensus pattern (20 bp):
TTAAAAATATTTAAAATCCA
Found at i:70278331 original size:28 final size:28
Alignment explanation
Indices: 70278291--70278346 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
70278281 GGGTTACGGA
70278291 GCATTACCGGACTTATCACTTAAACAAT
1 GCATTACCGGACTTATCACTTAAACAAT
*
70278319 GCATTACTGGACTTATCACTTAAACAAT
1 GCATTACCGGACTTATCACTTAAACAAT
70278347 CATACATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (28 bp):
GCATTACCGGACTTATCACTTAAACAAT
Found at i:70285382 original size:43 final size:45
Alignment explanation
Indices: 70285297--70285383 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 45
70285287 TTATCCTATA
* * **
70285297 AAAAAAGAATTTAAAAAAAAGGGAGAAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAAAAAAAAGGGAGAAGATAAACATAAGTTGTTG
*
70285342 AAAAAAGAATTT-AAAAAGA-GGAGAAGATAAACATAAGTTGTT
1 AAAAAAGAATTTAAAAAAAAGGGAGAAGATAAACATAAGTTGTT
70285384 AGATTTACCC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 19 0.51
44 6 0.16
45 12 0.32
ACGTcount: A:0.53, C:0.02, G:0.22, T:0.23
Consensus pattern (45 bp):
AAAAAAGAATTTAAAAAAAAGGGAGAAGATAAACATAAGTTGTTG
Found at i:70304343 original size:39 final size:39
Alignment explanation
Indices: 70304284--70304366 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
70304274 TTCACACTTG
*
70304284 CATAGTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
1 CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
70304323 CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
1 CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
70304362 CATAC
1 CATAC
70304367 CAAAACTTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (39 bp):
CATACTTTAGCCAAAACTCAACCAACTTATAACTAAGTT
Found at i:70314131 original size:39 final size:40
Alignment explanation
Indices: 70314088--70314255 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
70314078 CTCGTTCAAG
* * * *
70314088 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
70314127 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
70314167 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
70314207 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
70314247 TGCCTTCGG
1 TGCCTTCGG
70314256 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:70314268 original size:40 final size:40
Alignment explanation
Indices: 70314125--70314255 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
70314115 TAACTCATAC
* *
70314125 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
70314165 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
70314205 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
70314245 AATGCCTTCGG
1 AATGCCTTCGG
70314256 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.04
40 79 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:70314268 original size:80 final size:80
Alignment explanation
Indices: 70314088--70314308 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 80
70314078 CTCGTTCAAG
* * * * * * * *
70314088 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATAT
*
70314152 TAAAACTCGCACGAA
66 TAAAACTCGCACAAA
*
70314167 TGCCTTCGGGACTTAACCCGGA-ATTAGT-A-TCTCGCACAAAGGCCTTCGGGACTTAACCCGGA
1 TGCCTTCGGGACTTAACCCGGATA-TAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGGA
70314229 -ATTAATAACTCGCACAAA
63 TATTAA-AACTCGCACAAA
** * *
70314247 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGGACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
70314309 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 14, Indels: 17
0.79 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 34 0.29
80 72 0.61
81 9 0.08
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATAT
TAAAACTCGCACAAA
Found at i:70321598 original size:41 final size:41
Alignment explanation
Indices: 70321526--70321663 Score: 156
Period size: 41 Copynumber: 3.4 Consensus size: 41
70321516 TCAAATTCTT
*
70321526 GCACACTAAGTGCCAAAACATAGCCGAAGCTATTTTAATCTC
1 GCACACTAAGTGCC-AAACATAGCCGAAGCTATTTCAATCTC
*** * *
70321568 GCACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTC
1 GCACACTAAGTGCCAAACATAGCCGAAGCTATTTCAATCTC
* *
70321609 ACACACTAAGTGCCACAA-ATAGCTGAAGCTATTTCGAA-C-C
1 GCACACTAAGTGCCA-AACATAGCCGAAGCTATTTC-AATCTC
70321649 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
70321664 TATATATATA
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
40 15 0.19
41 50 0.62
42 15 0.19
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (41 bp):
GCACACTAAGTGCCAAACATAGCCGAAGCTATTTCAATCTC
Found at i:70321717 original size:45 final size:46
Alignment explanation
Indices: 70321627--70321717 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
70321617 AGTGCCACAA
* * *
70321627 ATAGCTGAAGCTATTTCGAACCGCACACTAAGTGCCATATATATAT
1 ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
*
70321673 ATAGCCGAAGCTATCTCGAATCACACA-TAAGTGCCATATATATAT
1 ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
70321718 CTGAAATGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 18 0.44
46 23 0.56
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (46 bp):
ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
Found at i:70322489 original size:45 final size:46
Alignment explanation
Indices: 70322399--70322489 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
70322389 AGTGCCACAA
* * *
70322399 ATAGCTGAAGCTATTTCGAACCGCACACTAAGTGCCATATATATAT
1 ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
*
70322445 ATAGCCGAAGCTATCTCGAATCACACA-TAAGTGCCATATATATAT
1 ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
70322490 CTGAAATGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 18 0.44
46 23 0.56
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (46 bp):
ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
Found at i:70323052 original size:772 final size:772
Alignment explanation
Indices: 70321570--70323889 Score: 4622
Period size: 772 Copynumber: 3.0 Consensus size: 772
70321560 TTAATCTCGC
70321570 ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
1 ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
70321635 AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
66 AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
70321700 TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
131 TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
70321765 AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAA
196 AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAA
70321830 AAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
261 AAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
70321895 ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
326 ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
70321960 AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
391 AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
70322025 TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
456 TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
70322090 CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
521 CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
70322155 TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
586 TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
70322220 TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
651 TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
70322285 AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
716 AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
70322342 ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
1 ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
70322407 AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
66 AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
70322472 TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
131 TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
70322537 AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAA
196 AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAA
70322602 AAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
261 AAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
70322667 ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
326 ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
70322732 AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
391 AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
70322797 TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
456 TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
70322862 CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
521 CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
70322927 TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
586 TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
70322992 TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
651 TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
70323057 AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
716 AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
70323114 ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
1 ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
70323179 AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
66 AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
70323244 TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
131 TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
*
70323309 AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAT
196 AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAA
*
70323374 TAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
261 AAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
70323439 ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
326 ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
70323504 AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
391 AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
70323569 TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
456 TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
70323634 CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
521 CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
70323699 TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
586 TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
70323764 TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
651 TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
70323829 AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
716 AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
70323886 ACAC
1 ACAC
70323890 AAAAATCATT
Statistics
Matches: 1546, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
772 1546 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (772 bp):
ACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCACAAATAGCTGA
AGCTATTTCGAACCGCACACTAAGTGCCATATATATATATAGCCGAAGCTATCTCGAATCACACA
TAAGTGCCATATATATATCTGAAATGTCGTCAAACATGACTATAATCTCATATACACAATTTATA
AAATATCAAAGCATTTAAAGTATAGTTGTAAAAATTCTTATCATATACGAACTTACCTTAGATAA
AAAAACGGCGAATCGAGTCGATTAGTCAATAACTTTTGTTTTTCCCCGATCCTGATCCGAATTCC
ATTTTTCTTGATCTAAATATATTCAAAATTAACTAATTTAATCAACTATTTATTCAATTCAATCC
AAAATATACATTAGGCTATTTACATGTTTGCCTCTAAACTTTCACATTTTTCATAATTTAGTCCT
TATTACTTAAAATCACAAATTAATGAAATTCCAATTATACCTATGCTAGATAAATTACTATTATG
CCCCTAGCAGCCCATATTTTTCATTTAGTTCACATTTTAACCACAAAATTTCCACATTTCACAAT
TTAATCCCTAATTTGCATTTTCACTAAAAATCACTTAACAAAACTTGTCTAACTATCATCAAACA
TTCATAATCTATCATCAATCATTAAGATACATGCCTATTAATCAATGGAAACTTTCTAAACCTTT
AACAGTTTTGCAAAATAGTCCCTAAGCTAGCTAGACCTAGTTGCAACGATATCAAAA
Found at i:70323261 original size:45 final size:46
Alignment explanation
Indices: 70323171--70323261 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
70323161 AGTGCCACAA
* * *
70323171 ATAGCTGAAGCTATTTCGAACCGCACACTAAGTGCCATATATATAT
1 ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
*
70323217 ATAGCCGAAGCTATCTCGAATCACACA-TAAGTGCCATATATATAT
1 ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
70323262 CTGAAATGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 18 0.44
46 23 0.56
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (46 bp):
ATAGCCGAAGCTATCTCGAACCACACACTAAGTGCCATATATATAT
Found at i:70327136 original size:18 final size:18
Alignment explanation
Indices: 70327113--70327148 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70327103 GTTTCTGAAA
70327113 AATGATTTTTTGGAACAT
1 AATGATTTTTTGGAACAT
70327131 AATGATTTTTTGGAACAT
1 AATGATTTTTTGGAACAT
70327149 GGCTTACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (18 bp):
AATGATTTTTTGGAACAT
Found at i:70337814 original size:47 final size:47
Alignment explanation
Indices: 70337751--70338157 Score: 552
Period size: 47 Copynumber: 8.6 Consensus size: 47
70337741 CCCTTCGGGA
* * *
70337751 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
70337798 CTTATCACATATATACACTTTTACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
70337845 CTTATCTCATATATGCA-TGTTCACATTCATTACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
70337892 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
70337939 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
70337988 CTTATCTCATATATGCA-TGTTCACATTCATTACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
70338035 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
70338082 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
70338131 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
70338158 TATTCAAATA
Statistics
Matches: 320, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
46 2 0.01
47 235 0.73
49 81 0.25
50 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:70338007 original size:143 final size:143
Alignment explanation
Indices: 70337772--70338157 Score: 679
Period size: 143 Copynumber: 2.7 Consensus size: 143
70337762 TATACACTTC
* * *
70337772 CACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTTACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTCATCACATTG
70337835 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCAC
66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCAC
70337900 ACATACACATGTT
131 ACATACACATGTT
*
70337913 CACATTCATCACATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTTATCACATTG
1 CACATTCATCACATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTCATCACATTG
70337978 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCAC
66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCAC
70338043 ACATACACATGTT
131 ACATACACATGTT
70338056 CACATTCATCACATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTCATCACATTG
* * *
70338121 GCCATTAGGCCTTATCACATATATACACT-TTCACATT
66 GCCATTCGGCCTTATCTCATATATGCA-TGTTCACATT
70338158 TATTCAAATA
Statistics
Matches: 234, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
141 32 0.14
143 201 0.86
144 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (143 bp):
CACATTCATCACATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTCATCACATTG
GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCAC
ACATACACATGTT
Found at i:70338087 original size:190 final size:191
Alignment explanation
Indices: 70337751--70338160 Score: 591
Period size: 190 Copynumber: 2.2 Consensus size: 191
70337741 CCCTTCGGGA
* **
70337751 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATATAC
* * * ** *
70337814 ACTTTTACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
* *
70337879 TTGGCCATTCGGCCTTATCAC-ACATACACA-TGTTCACATTCATCACATTGGCCATTCGAC
131 TTGGCCATTCGACCTTATCACAACATACACACT-TTCACATTCATCACATTGGCCATTAGAC
* *
70337939 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGCCTTATCTCATATATGC
1 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATATAC
*
70338004 A-TGTTCACATTCATTACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCAC
66 ACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCAC
* * *
70338068 ATTGGCCATTCGACCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
130 ATTGGCCATTCGACCTTATCACA-ACATACACACTTTCACATTCATCACATTGGCCATTAGAC
70338131 CTTATCAC--ATATATACACTTTCACATTTAT
1 CTTATCACATATATATACACTTTCACATTTAT
70338161 TCAAATATAC
Statistics
Matches: 199, Mismatches: 17, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
188 10 0.05
189 2 0.01
190 145 0.73
192 41 0.21
193 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (191 bp):
CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
TTGGCCATTCGACCTTATCACAACATACACACTTTCACATTCATCACATTGGCCATTAGAC
Found at i:70356359 original size:27 final size:26
Alignment explanation
Indices: 70356322--70356436 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
70356312 AGCATGGCTG
*
70356322 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
70356348 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGACAGAGCCA
70356376 CCAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
70356403 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
70356430 CCAGAAC
1 CCAGAAC
70356437 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:70356386 original size:54 final size:54
Alignment explanation
Indices: 70356322--70356436 Score: 187
Period size: 54 Copynumber: 2.1 Consensus size: 54
70356312 AGCATGGCTG
*
70356322 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
* *
70356376 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
70356430 CCAGAAC
1 CCAGAAC
70356437 GCTTCCTCCA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 38 0.67
55 19 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
Found at i:70361398 original size:19 final size:19
Alignment explanation
Indices: 70361371--70361407 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70361361 ATACAAATAC
70361371 TTTTATTATATTTTAGTTA
1 TTTTATTATATTTTAGTTA
*
70361390 TTTTTTTATATTTTAGTT
1 TTTTATTATATTTTAGTT
70361408 TAAATCCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTATTATATTTTAGTTA
Found at i:70363607 original size:42 final size:42
Alignment explanation
Indices: 70363528--70363640 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
70363518 GTACTAAACA
* * ** * *
70363528 GAAACCCGTAAGGGTTAAACAAAAGCTCATAAGAGCTGAACG
1 GAAACCCATAAAGGTTAAACTGAAGCTCAAAAAAGCTGAACG
* *
70363570 GAAACCCATAAAGGTTAAACTGAAGTTCAAAAAAGCTGAACT
1 GAAACCCATAAAGGTTAAACTGAAGCTCAAAAAAGCTGAACG
* *
70363612 AAAACCCA-AAAGAGTTAAACTGAAACTCA
1 GAAACCCATAAAG-GTTAAACTGAAGCTCA
70363641 TATGAGTTGA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 4 0.07
42 55 0.93
ACGTcount: A:0.48, C:0.19, G:0.18, T:0.16
Consensus pattern (42 bp):
GAAACCCATAAAGGTTAAACTGAAGCTCAAAAAAGCTGAACG
Found at i:70363647 original size:21 final size:20
Alignment explanation
Indices: 70363623--70363661 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70363613 AAACCCAAAA
70363623 GAGTTAAACTGAAACTCATAT
1 GAGTT-AACTGAAACTCATAT
* *
70363644 GAGTTGACTGAAGCTCAT
1 GAGTTAACTGAAACTCAT
70363662 GAGAGCTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
GAGTTAACTGAAACTCATAT
Found at i:70378777 original size:4 final size:4
Alignment explanation
Indices: 70378768--70378810 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
70378758 GTTTAGGCTT
* * *
70378768 TCTA TCTA TCTA TCTA TCTA TCTA TTTA TCTA CCTG TCTA TCT
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCT
70378811 GTAACGCCCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.21, C:0.26, G:0.02, T:0.51
Consensus pattern (4 bp):
TCTA
Found at i:70388341 original size:45 final size:45
Alignment explanation
Indices: 70388240--70388532 Score: 416
Period size: 45 Copynumber: 6.6 Consensus size: 45
70388230 TTTTCTCTAA
* * * *
70388240 TCACCGGCAT-TTCGCCTGCTAGGCTC-GAGGCCTG-ATA-TCATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATT
* * *
70388282 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-ACCCGAATAGTATC
1 TCACCGGCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATT
* * *
70388327 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
* *
70388372 TCATCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGATTAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
70388417 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
*
70388462 TCACCGGCATCATAGCCTGCTAGGCTCAAAAGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
70388507 TCACCGGCATCATAGCCTGCTAGGCT
1 TCACCGGCATCATAGCCTGCTAGGCT
70388533 TGAAGCCCGA
Statistics
Matches: 229, Mismatches: 16, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
42 10 0.04
43 14 0.06
44 6 0.03
45 198 0.86
46 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
Found at i:70391984 original size:13 final size:13
Alignment explanation
Indices: 70391966--70391992 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70391956 TGTTTCCACG
70391966 AAGTTCAATATCT
1 AAGTTCAATATCT
70391979 AAGTTCAATATCT
1 AAGTTCAATATCT
70391992 A
1 A
70391993 CATGGTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (13 bp):
AAGTTCAATATCT
Found at i:70396235 original size:42 final size:44
Alignment explanation
Indices: 70396140--70396292 Score: 206
Period size: 43 Copynumber: 3.6 Consensus size: 44
70396130 CAATGTGATA
* * * *
70396140 TCCCAAATATGGTCTTACATGTTATCACATAT-CGATGCCACTG
1 TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
70396183 TCCCAAACATGGTCTTACACG-AATCA-ATATACGATGCCAATG
1 TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
* *
70396225 TCCCATACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
* *
70396268 TTCCAAACATGGTCTTACATGTAAT
1 TCCCAAACATGGTCTTACACGTAAT
70396293 TACAACTCGA
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
41 4 0.04
42 34 0.35
43 59 0.60
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (44 bp):
TCCCAAACATGGTCTTACACGTAATCACATATACGATGCCAATG
Found at i:70400862 original size:28 final size:28
Alignment explanation
Indices: 70400822--70400877 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
70400812 ATTTATCAAT
70400822 GCAATAACTTTAATATCATAGAGAGTAA
1 GCAATAACTTTAATATCATAGAGAGTAA
70400850 GCAATAACTTTAATATCATAGAGAGTAA
1 GCAATAACTTTAATATCATAGAGAGTAA
70400878 AAGTACCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (28 bp):
GCAATAACTTTAATATCATAGAGAGTAA
Found at i:70404032 original size:43 final size:43
Alignment explanation
Indices: 70403934--70404057 Score: 112
Period size: 43 Copynumber: 2.9 Consensus size: 43
70403924 TCAGATATCG
* * * **
70403934 ATGCCACTGTCCCAGACA-GGATTTTACACG-AATCA-ATATATG
1 ATGCCAATATCCCAGACATGG-TCTTACACGTAATCACA-ATACA
70403976 ATGCCAATATCCCATG-CATGGTCTTACACGTAATCACAATACA
1 ATGCCAATATCCCA-GACATGGTCTTACACGTAATCACAATACA
* * * *
70404019 ATGCTAATGTCCCAGACATGGTCTTACATGTAATTACAA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACAA
70404058 CTCGATAACC
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
42 23 0.34
43 44 0.65
44 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACAATACA
Found at i:70408041 original size:14 final size:13
Alignment explanation
Indices: 70408018--70408048 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
70408008 AATCCAAAAG
70408018 TTTTTAATTTTAA
1 TTTTTAATTTTAA
70408031 TTTTGTAATTTTAA
1 TTTT-TAATTTTAA
70408045 TTTT
1 TTTT
70408049 CTTTATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTTAA
Found at i:70409180 original size:22 final size:22
Alignment explanation
Indices: 70409155--70409199 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
70409145 TCTTAGAGAG
70409155 TATGAGAGTATCCAAAAAACCC
1 TATGAGAGTATCCAAAAAACCC
70409177 TATGAGAGTATCCAAAAAACCC
1 TATGAGAGTATCCAAAAAACCC
70409199 T
1 T
70409200 TCAGAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.22, G:0.13, T:0.20
Consensus pattern (22 bp):
TATGAGAGTATCCAAAAAACCC
Found at i:70411776 original size:21 final size:21
Alignment explanation
Indices: 70411734--70411776 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
70411724 GAGGCATAGG
*
70411734 TTTGGGTTTAGGGTTCTAGAT
1 TTTGGGTTTAGGGTTCGAGAT
*
70411755 TTTGGGTTTAGGGTTCGGGAT
1 TTTGGGTTTAGGGTTCGAGAT
70411776 T
1 T
70411777 CTATATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.05, G:0.37, T:0.47
Consensus pattern (21 bp):
TTTGGGTTTAGGGTTCGAGAT
Found at i:70415237 original size:3 final size:3
Alignment explanation
Indices: 70415229--70415259 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
70415219 TAAGTTAAGG
70415229 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
70415260 TATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:70415264 original size:3 final size:3
Alignment explanation
Indices: 70415258--70415283 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
70415248 AATAATAATA
70415258 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
70415284 CACTACTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:70421296 original size:25 final size:25
Alignment explanation
Indices: 70421253--70421301 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
70421243 ATGTAGAAAA
* *
70421253 ACTAAACCCAACAACTATGGAGAAG
1 ACTAAACCCAACAAATATGAAGAAG
70421278 ACTAAACCCTAA-AAATATGAAGAA
1 ACTAAACCC-AACAAATATGAAGAA
70421302 AAAAAACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.53, C:0.20, G:0.12, T:0.14
Consensus pattern (25 bp):
ACTAAACCCAACAAATATGAAGAAG
Found at i:70425663 original size:41 final size:41
Alignment explanation
Indices: 70425610--70425839 Score: 241
Period size: 41 Copynumber: 5.6 Consensus size: 41
70425600 AACTGAACAA
* * *
70425610 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGGTCAAGCTTT
1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTT
* * * *
70425651 TAGCAGCGCTTTTTG-AAAAACGCTGCTATTGCTC-AGTTTT
1 TAGCAGCGC-TTTTGAAAAAACGCCGCTATAGATCAAGGTTT
** *
70425691 TAGCAGCGCTTTTGGGAAAATGCCGCTATAGATCAAGGTTT
1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTT
* *** * *
70425732 TAGCGGCGCTTTCCCAAAAGCGCCGCTATAGATCGAGGTTT
1 TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTT
*
70425773 TAG-AGGCGCTTTTGAAAAAACGCCGCTATAGATCTAGGTTT
1 TAGCA-GCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTT
* **
70425814 TAGCGGCGCTTTTGGGAAAACGCCGC
1 TAGCAGCGCTTTTGAAAAAACGCCGC
70425840 AAAAAATTAA
Statistics
Matches: 156, Mismatches: 28, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
39 5 0.03
40 28 0.18
41 118 0.76
42 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (41 bp):
TAGCAGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTT
Found at i:70425838 original size:82 final size:82
Alignment explanation
Indices: 70425610--70425839 Score: 277
Period size: 81 Copynumber: 2.8 Consensus size: 82
70425600 AACTGAACAA
* * * *
70425610 TAGC-GGCGCTTTTGAAAAAACGCCGCTATAGGTCAAGCTTTTAGCAGCGCTTTTTGAAAAACGC
1 TAGCAGGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTTTAGCGGCGCTTTTCGAAAAACGC
* * * *
70425674 TGCTATTGCTCAGTTTT
66 CGCTATAGATCAGGTTT
** * * * *
70425691 TAGCA-GCGCTTTTGGGAAAATGCCGCTATAGATCAAGGTTTTAGCGGCGCTTTCCCAAAAGCGC
1 TAGCAGGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTTTAGCGGCGCTTTTCGAAAAACGC
70425755 CGCTATAGATCGAGGTTT
66 CGCTATAGATC-AGGTTT
* * *
70425773 TAG-AGGCGCTTTTGAAAAAACGCCGCTATAGATCTAGGTTTTAGCGGCGCTTTTGGGAAAACGC
1 TAGCAGGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTTTAGCGGCGCTTTTCGAAAAACGC
70425837 CGC
66 CGC
70425840 AAAAAATTAA
Statistics
Matches: 123, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
81 62 0.50
82 61 0.50
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (82 bp):
TAGCAGGCGCTTTTGAAAAAACGCCGCTATAGATCAAGGTTTTAGCGGCGCTTTTCGAAAAACGC
CGCTATAGATCAGGTTT
Found at i:70426778 original size:201 final size:201
Alignment explanation
Indices: 70426433--70427437 Score: 2001
Period size: 201 Copynumber: 5.0 Consensus size: 201
70426423 TTCTGGGATG
70426433 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
1 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
*
70426498 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCCTTTGCTGGTATTATTTGACATTG
66 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
70426563 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
131 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
70426628 ATAAAA
196 ATAAAA
70426634 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
1 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
70426699 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
66 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
70426764 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
131 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
70426829 ATAAAA
196 ATAAAA
70426835 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
1 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
70426900 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
66 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
70426965 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
131 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
70427030 ATAAAA
196 ATAAAA
70427036 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
1 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
70427101 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
66 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
70427166 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
131 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
70427231 ATAAAA
196 ATAAAA
70427237 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
1 GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
70427302 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
66 AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
70427367 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
131 TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
70427432 ATAAAA
196 ATAAAA
70427438 TAACTCACTT
Statistics
Matches: 803, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 803 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (201 bp):
GCTACTCTTTTTCAGAGAGTTTTTATTACGTTGAGATTGTGGTTTGTGAAGAATGCTTAGGAATA
AGAAATATATACGAACATACAGATTTTAATTACAAAATTCCTTTTGCTGGTATTATTTGACATTG
TACTTTTTTAGAGGGCTAGAGCTTTGCAGGGACTTGCTGGTTTAGGAATGAAGATGGCAACTGTT
ATAAAA
Found at i:70428065 original size:23 final size:23
Alignment explanation
Indices: 70428039--70428084 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
70428029 ACTAGAGAAC
70428039 ATCTGTTAAATCGGATTAGGTGG
1 ATCTGTTAAATCGGATTAGGTGG
70428062 ATCTGTTAAATCGGATTAGGTGG
1 ATCTGTTAAATCGGATTAGGTGG
70428085 CATTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.30, T:0.35
Consensus pattern (23 bp):
ATCTGTTAAATCGGATTAGGTGG
Found at i:70430148 original size:21 final size:21
Alignment explanation
Indices: 70430124--70430165 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
70430114 ATAAATCCTC
70430124 TACAGAAAGTTTAAAGGTTAA
1 TACAGAAAGTTTAAAGGTTAA
70430145 TACAGAAAGTTTAAAGGTTAA
1 TACAGAAAGTTTAAAGGTTAA
70430166 CTTCCAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.19, T:0.29
Consensus pattern (21 bp):
TACAGAAAGTTTAAAGGTTAA
Found at i:70431206 original size:22 final size:23
Alignment explanation
Indices: 70431164--70431206 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
70431154 TTTCAAAAAT
*
70431164 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
70431187 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
70431207 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:70431290 original size:43 final size:43
Alignment explanation
Indices: 70431242--70431424 Score: 233
Period size: 43 Copynumber: 4.3 Consensus size: 43
70431232 TTCATGTTTT
* * *
70431242 TTAGCGGCGTTTGTGAGAAAAGCGCTGCTAAAGGTTATGGTCC
1 TTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCC
* ** * *
70431285 TTAGCGGCGTTTGCGGGAAAAGCGTCGCTAAAGGTCATGGTTC
1 TTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCC
* **
70431328 TTAGCGGCGTTTGT-AAAAAAGCACCGCTAAAGGTCATGGTTT
1 TTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCC
* * *
70431370 TTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAAGTCATGGTCT
1 TTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCC
70431413 TTAGCGGCGTTT
1 TTAGCGGCGTTT
70431425 TTTTAAATAA
Statistics
Matches: 124, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 37 0.30
43 87 0.70
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCC
Found at i:70431374 original size:85 final size:86
Alignment explanation
Indices: 70431227--70431424 Score: 238
Period size: 85 Copynumber: 2.3 Consensus size: 86
70431217 ATAATTTTTT
* * * * * * *
70431227 TAAAGTTCATGTTTTTTAGCGGCGTTTGTGAGAAAAGCGCTGCTAAAGGTTATGGTCCTTAGCGG
1 TAAAGGTCATGGTTCTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGGTCATGGTCCTTAGCGG
*** *
70431292 CGTTTGCGGGAAAAGCGTCGC
66 CGTTTGCAAAAAAAGCGCCGC
**
70431313 TAAAGGTCATGGTTCTTAGCGGCGTTTGT-AAAAAAGCACCGCTAAAGGTCATGGTTTTTAGCGG
1 TAAAGGTCATGGTTCTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGGTCATGGTCCTTAGCGG
*
70431377 CGTTTGTAAAAAAAGCGCCGC
66 CGTTTGCAAAAAAAGCGCCGC
*
70431398 TAAAAGTCATGG-TCTTTAGCGGCGTTT
1 TAAAGGTCATGGTTC-TTAGCGGCGTTT
70431425 TTTTAAATAA
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
84 2 0.02
85 68 0.71
86 26 0.27
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (86 bp):
TAAAGGTCATGGTTCTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGGTCATGGTCCTTAGCGG
CGTTTGCAAAAAAAGCGCCGC
Found at i:70432589 original size:34 final size:34
Alignment explanation
Indices: 70432542--70432609 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
70432532 TATTGGATGC
*
70432542 GTTTATTCCAGTTAAGAGAAGTATGGAGGGAAAG
1 GTTTATTCCAGTTAAGAGAAGTATGGACGGAAAG
*
70432576 GTTTATTCGAGTTAAGAGAAGTATGGACGGAAAG
1 GTTTATTCCAGTTAAGAGAAGTATGGACGGAAAG
70432610 AGATTTGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (34 bp):
GTTTATTCCAGTTAAGAGAAGTATGGACGGAAAG
Found at i:70434224 original size:19 final size:21
Alignment explanation
Indices: 70434187--70434227 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
70434177 CTGGTGAGAA
70434187 TTCAGTTTTGTCAATTTAAAT
1 TTCAGTTTTGTCAATTTAAAT
70434208 TTCAGTTTT-TC-ATTTAAAT
1 TTCAGTTTTGTCAATTTAAAT
70434227 T
1 T
70434228 GGAGATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.45
20 2 0.10
21 9 0.45
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (21 bp):
TTCAGTTTTGTCAATTTAAAT
Found at i:70435962 original size:17 final size:17
Alignment explanation
Indices: 70435937--70435978 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
70435927 CAACTGTTGC
70435937 AAAAA-AAAAAAAAGAA-
1 AAAAAGAAAAAAAA-AAG
70435953 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
70435970 AAAAAGAAA
1 AAAAAGAAA
70435979 CTACGAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:70436016 original size:20 final size:20
Alignment explanation
Indices: 70435987--70436026 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70435977 AACTACGAGC
*
70435987 TTGAACTCAAATACATATAA
1 TTGAACTCAAATAAATATAA
*
70436007 TTGAATTCAAATAAATATAA
1 TTGAACTCAAATAAATATAA
70436027 GAAAGTTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.33
Consensus pattern (20 bp):
TTGAACTCAAATAAATATAA
Found at i:70439474 original size:32 final size:34
Alignment explanation
Indices: 70439428--70439505 Score: 147
Period size: 34 Copynumber: 2.3 Consensus size: 34
70439418 ACTAAAATGC
70439428 TTTTATATATATATAAAACTTTGATTTACTTCAA
1 TTTTATATATATATAAAACTTTGATTTACTTCAA
70439462 TTTTATATATATATAAAACTTTGATTTACTTCAA
1 TTTTATATATATATAAAACTTTGATTTACTTCAA
*
70439496 TTTTACATAT
1 TTTTATATAT
70439506 TTAAAGAAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (34 bp):
TTTTATATATATATAAAACTTTGATTTACTTCAA
Found at i:70441122 original size:15 final size:16
Alignment explanation
Indices: 70441102--70441132 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
70441092 TTTTTTTAGA
70441102 ATAAATAT-TAAATTT
1 ATAAATATATAAATTT
70441117 ATAAATATATAAATTT
1 ATAAATATATAAATTT
70441133 TGGTTTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAATATATAAATTT
Found at i:70443896 original size:36 final size:36
Alignment explanation
Indices: 70443855--70443927 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
70443845 GTAGCAATTT
70443855 AACTACTGGTTGCCAAGTATCGATACTAGACATTCA
1 AACTACTGGTTGCCAAGTATCGATACTAGACATTCA
70443891 AACTACTGGTTGCCAAGTATCGATACTAGACATTCA
1 AACTACTGGTTGCCAAGTATCGATACTAGACATTCA
70443927 A
1 A
70443928 GTATCGATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (36 bp):
AACTACTGGTTGCCAAGTATCGATACTAGACATTCA
Found at i:70446762 original size:46 final size:48
Alignment explanation
Indices: 70446618--70446927 Score: 232
Period size: 46 Copynumber: 6.6 Consensus size: 48
70446608 CATTTGTGCT
* * * *
70446618 CTAGTGTACGA-CATGTCTGGGACCTGCATCGGCCAC-ATTATG-AGAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAG
* * * * * * *
70446664 CCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAAAT-AAGAG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAG
70446712 CTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAG
* *
70446758 CTAGTGTAAGA-CATGTCTGGGACATGCATC-GACTACGAGATGT-G-T
1 CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAG
* * * *
70446803 C-AGTGTAAGACCATGTCTGGAACATGGCATCAGCATGGAGATGTGAGAG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT-AGAG
* * * * ** *
70446852 CCAGTGTAAGACCATGCCTGGGACATGGCGTCAGCCTCGATTTCG-ATAG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAT-GTAGAG
*
70446901 -TCAGTGTAATACCATGTCTGGGACATG
1 CT-AGTGTAAGACCATGTCTGGGACATG
70446928 GTATCGACTT
Statistics
Matches: 214, Mismatches: 34, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
44 9 0.04
45 17 0.08
46 73 0.34
47 28 0.13
48 25 0.12
49 27 0.13
50 34 0.16
51 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAG
Found at i:70451388 original size:46 final size:45
Alignment explanation
Indices: 70451307--70451410 Score: 113
Period size: 46 Copynumber: 2.3 Consensus size: 45
70451297 GTGCCGATGT
* * *
70451307 CATGTCCTAGACATGGTCTTACATTGACACATCTCGTA-GCCGATA
1 CATGTCCCAGACATGGTCTTACACTGACACATCTCG-AGGCCAATA
* * *
70451352 CATGTCCCAGATAT-GTCTTACACTGACTTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGAGGCCAATA
70451398 CATGTCCCAGACA
1 CATGTCCCAGACA
70451411 CTAATACTCG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
44 12 0.24
45 13 0.27
46 24 0.49
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGACACATCTCGAGGCCAATA
Found at i:70457359 original size:46 final size:48
Alignment explanation
Indices: 70457265--70457478 Score: 202
Period size: 46 Copynumber: 4.6 Consensus size: 48
70457255 TATCAGAGCC
* ** * *
70457265 AGTGTAAGACCATGTCTAGGACATGGCATCAACATTGAAATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTA-AGCT
*
70457313 AGTGTAAGA-CATGACTGGGACAT-GCATCGGCCTTGAGATGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGCT
*
70457359 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATGT--G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGTAAGCT
* *
70457402 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATAGATG--ATCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTG--AGATGTAAGCT
*
70457450 AGTGTAAGACCATGTCT-AGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
70457479 AGCATTTTAC
Statistics
Matches: 145, Mismatches: 11, Indels: 22
0.81 0.06 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 18 0.12
46 71 0.49
47 35 0.24
48 10 0.07
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGCT
Found at i:70457472 original size:91 final size:90
Alignment explanation
Indices: 70457313--70457478 Score: 214
Period size: 91 Copynumber: 1.8 Consensus size: 90
70457303 AATGAGAGCT
* *
70457313 AGTGTAAGACATGACTGGGACATGCATCGGCCTTGAGATGTAAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGACTGGGACATGCATCGGACTTGAGATG-AAGCTAGTGTAAGACATGTCTGAG
70457378 ACAT-GCATCGGCTACGAGATGTGTC
65 ACATGGCATCGGCTACGAGATGTGTC
* *
70457403 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATAGATG-ATCTAGTGTAAGACCATGTC
1 AGTGTAAGA-CATGACTGGGACAT-GCATCGGACTTG--AGATGAAGCTAGTGTAAGA-CATGTC
70457466 T-AGACATGGCATC
61 TGAGACATGGCATC
70457479 AGCATTTTAC
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
90 9 0.14
91 35 0.53
92 17 0.26
93 5 0.08
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (90 bp):
AGTGTAAGACATGACTGGGACATGCATCGGACTTGAGATGAAGCTAGTGTAAGACATGTCTGAGA
CATGGCATCGGCTACGAGATGTGTC
Found at i:70457478 original size:138 final size:138
Alignment explanation
Indices: 70457217--70457478 Score: 336
Period size: 138 Copynumber: 1.9 Consensus size: 138
70457207 TCATTTGTGC
* *
70457217 GCTAGTGTACGACATTCTGGGACATGCATCGGCCACATTATCAGAGCCAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACATTCTGGGACATGCATCGGCCACATGAT-AGAGCCAGTGTAAGACCATGTCT
*
70457282 AGGACATGGCATCAACATTGAAATGAGAGCTAGTGTAAGACATGACTGGGACATGCATCGGCCTT
65 AGGACATGGCATCAACATTGAAATGAGAGCTAGTGTAAGACATGACTGAGACATGCATCGGCCTT
70457347 GAGATGTAA
130 GAGATGTAA
* * *
70457356 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GTGTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACAT-TCTGGGACATGCATCGGCCAC-ATGATAGAGCCAGTGTAAGACCATGTC
* * * * *
70457419 TGGGACATGGCATCGAC-TTGATA-GATGATCTAGTGTAAGACCATGTCT-AGACATGGCATC
64 TAGGACATGGCATCAACATTGAAATGA-GAGCTAGTGTAAGA-CATGACTGAGACAT-GCATC
70457479 AGCATTTTAC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
136 2 0.02
137 23 0.21
138 45 0.42
139 14 0.13
140 22 0.21
141 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (138 bp):
GCTAGTGTAAGACATTCTGGGACATGCATCGGCCACATGATAGAGCCAGTGTAAGACCATGTCTA
GGACATGGCATCAACATTGAAATGAGAGCTAGTGTAAGACATGACTGAGACATGCATCGGCCTTG
AGATGTAA
Found at i:70462625 original size:25 final size:25
Alignment explanation
Indices: 70462597--70462647 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
70462587 CCACAGATGA
70462597 GTTTGAGGTGTTTGTGAAAGAATTT
1 GTTTGAGGTGTTTGTGAAAGAATTT
70462622 GTTTGAGGTGTTTGTGAAAGAATTT
1 GTTTGAGGTGTTTGTGAAAGAATTT
70462647 G
1 G
70462648 ATAGATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (25 bp):
GTTTGAGGTGTTTGTGAAAGAATTT
Found at i:70470579 original size:47 final size:47
Alignment explanation
Indices: 70470524--70470646 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
70470514 CATGCCTTGG
* *
70470524 CATGGTCTTATATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
70470571 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
70470618 CATGGTCTTACATGGTATCCTTATCTTAC
1 CATGGTCTTACATGGTATCCTTATCTTAC
70470647 TGCCAATGCC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:70470851 original size:44 final size:44
Alignment explanation
Indices: 70470784--70470868 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
70470774 ATCCTTAACT
* *
70470784 GTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCC
1 GTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCC
* * *
70470828 GTCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
70470869 GAGATATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCC
Found at i:70475967 original size:43 final size:42
Alignment explanation
Indices: 70475920--70476035 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 42
70475910 TCCCAGACGT
*
70475920 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGAAAG
1 GGTCTTACACGTAATCAAATATCGATGCCA-TATCCCAGAAAG
* * * *
70475963 GGTCTTACACGAAATCAAATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATATCGATGCC-ATATCCCAGAAAG
*
70476005 GGTCTTACACGTAAATCATAA-GTCGATGCCA
1 GGTCTTACACGT-AATCA-AATATCGATGCCA
70476036 ATGTTCCAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 27 0.44
43 26 0.42
44 9 0.15
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATATCGATGCCATATCCCAGAAAG
Found at i:70476045 original size:44 final size:42
Alignment explanation
Indices: 70475901--70476059 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
70475891 AGCTCGTACA
* * *
70475901 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-AA-ATCG
* * * *
70475944 ATGCCACTATCCCAGAAAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAT-CG
*
70475986 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AA-TCG
* *
70476030 ATGCCAATGTTCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
70476060 AAAACACATA
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 33 0.34
44 31 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATCG
Found at i:70483385 original size:43 final size:44
Alignment explanation
Indices: 70483320--70483413 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 44
70483310 AATGCTAACG
** *
70483320 TCCCAGACGGGGTCTTAAATGT-AATCA-AATATCGATGCCACTA
1 TCCCAGAAAGGGTCTTAAATGTAAATCATAA-ATCGATGCCAATA
* * * *
70483363 TCCCAGAAAGGGTTTTACATGTAAATCATAAGTCGATGCCAATG
1 TCCCAGAAAGGGTCTTAAATGTAAATCATAAATCGATGCCAATA
70483407 TCCCAGA
1 TCCCAGA
70483414 TGTGGTCTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
43 18 0.43
44 22 0.52
45 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (44 bp):
TCCCAGAAAGGGTCTTAAATGTAAATCATAAATCGATGCCAATA
Found at i:70483425 original size:44 final size:42
Alignment explanation
Indices: 70483319--70483425 Score: 99
Period size: 44 Copynumber: 2.5 Consensus size: 42
70483309 CAATGCTAAC
* * *
70483319 GTCCCAGACGGGGTCTTAAATGTAATCAAATATCGATGCCACT
1 GTCCCAGA-AGGGTCTTACATGTAATCAAATATCGATGCCAAT
* * *
70483362 ATCCCAGAAAGGGTTTTACATGTAAATCATAA-GTCGATGCCAAT
1 GTCCCAG-AAGGGTCTTACATGT-AATCA-AATATCGATGCCAAT
*
70483406 GTCCCAGATGTGGTCTTACA
1 GTCCCAGAAG-GGTCTTACA
70483426 CTAAAACACA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
43 19 0.37
44 30 0.59
45 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (42 bp):
GTCCCAGAAGGGTCTTACATGTAATCAAATATCGATGCCAAT
Done.