Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 216 of 310
Found at i:70874598 original size:5 final size:5
Alignment explanation
Indices: 70874588--70874614 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
70874578 TGAAAAGGAA
70874588 AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AA
70874615 TTTATTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:70874733 original size:13 final size:13
Alignment explanation
Indices: 70874715--70874758 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
70874705 CTAGATTTTT
70874715 ACTAAATATTATC
1 ACTAAATATTATC
70874728 ACTAAATA--AT-
1 ACTAAATATTATC
*
70874738 TCTAAATATTATC
1 ACTAAATATTATC
70874751 ACTAAATA
1 ACTAAATA
70874759 ATTCAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 2 0.08
13 15 0.58
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTAAATATTATC
Found at i:70874746 original size:23 final size:23
Alignment explanation
Indices: 70874716--70874767 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
70874706 TAGATTTTTA
70874716 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
70874739 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
70874762 CAAAAT
1 CTAAAT
70874768 TTAAAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:70879847 original size:42 final size:42
Alignment explanation
Indices: 70879747--70879850 Score: 100
Period size: 42 Copynumber: 2.5 Consensus size: 42
70879737 TGCTAAATGG
* * * * * **
70879747 AAACCCGTAAGGGTTGAACGGAAGCTCAAAGGAGCTGAATGA
1 AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACAA
** **
70879789 AAACCCACGACAGTTAAACAGAAGCTCAAAAGAGCTAAACAA
1 AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACAA
*
70879831 AAACCCATTAGGGTTAAACA
1 AAACCCATAAGGGTTAAACA
70879851 AAAACTCATA
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.45, C:0.20, G:0.21, T:0.13
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACAA
Found at i:70879867 original size:21 final size:21
Alignment explanation
Indices: 70879819--70879868 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
70879809 GAAGCTCAAA
*
70879819 AGAGCTAAACAAAAACCCATT
1 AGAGTTAAACAAAAACCCATT
* *
70879840 AGGGTTAAACAAAAACTCATAT
1 AGAGTTAAACAAAAACCCAT-T
70879862 A-AGTTAA
1 AGAGTTAA
70879869 CTAAAGCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.52, C:0.16, G:0.12, T:0.20
Consensus pattern (21 bp):
AGAGTTAAACAAAAACCCATT
Found at i:70905320 original size:52 final size:52
Alignment explanation
Indices: 70905264--70905370 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
70905254 TGAGGGGGTC
*
70905264 AAACAAAAACTCTTTCTTTTTTAAACACTAATTATATATCAAAACAAAAAAA
1 AAACAAAAACTCTTTCTTTTTTAAAAACTAATTATATATCAAAACAAAAAAA
*
70905316 AAACAAAAATTCTTTCTTTTTTAAAAACTAATTATATATCAAAACAAAAAAA
1 AAACAAAAACTCTTTCTTTTTTAAAAACTAATTATATATCAAAACAAAAAAA
70905368 AAA
1 AAA
70905371 TTTAAAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (52 bp):
AAACAAAAACTCTTTCTTTTTTAAAAACTAATTATATATCAAAACAAAAAAA
Found at i:70915423 original size:19 final size:19
Alignment explanation
Indices: 70915401--70915437 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
70915391 ACCATGCATA
70915401 GCAAACAAGCATATGCACG
1 GCAAACAAGCATATGCACG
70915420 GCAAACAAGCATATGCAC
1 GCAAACAAGCATATGCAC
70915438 ATCACCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.27, G:0.19, T:0.11
Consensus pattern (19 bp):
GCAAACAAGCATATGCACG
Found at i:70916618 original size:39 final size:39
Alignment explanation
Indices: 70916556--70916656 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
70916546 ATCGTGATCT
* * * *
70916556 GAAGCCCGAAGTCTAGCTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
70916595 GAAGCCCGAAGGCTAATTGAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
70916634 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
70916657 TCATCAGAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:70916693 original size:21 final size:20
Alignment explanation
Indices: 70916669--70916716 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
70916659 ATCAGAGCTG
70916669 AACTGAAACCCCAAAAGAGTT
1 AACTGAAA-CCCAAAAGAGTT
* * *
70916690 AACTGAAACTCATATGAGTT
1 AACTGAAACCCAAAAGAGTT
70916710 AACTGAA
1 AACTGAA
70916717 GCTCGTAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.21
Consensus pattern (20 bp):
AACTGAAACCCAAAAGAGTT
Found at i:70921132 original size:36 final size:36
Alignment explanation
Indices: 70921075--70921156 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
70921065 CATAGTTTGG
* ** * *
70921075 CAAATTAATACAGTTTGCCATATTTATATAGA-TCAC
1 CAAATTAACACAGTTCACCATAATAATATA-ATTCAC
70921111 CAAATTAACACAGTTCACCATAATAATATAATTCAC
1 CAAATTAACACAGTTCACCATAATAATATAATTCAC
*
70921147 CAAGTTAACA
1 CAAATTAACA
70921157 TGGTTCACAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 1 0.03
36 38 0.97
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (36 bp):
CAAATTAACACAGTTCACCATAATAATATAATTCAC
Found at i:70921174 original size:17 final size:18
Alignment explanation
Indices: 70921152--70921189 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
70921142 TTCACCAAGT
* *
70921152 TAACATGGTTCAC-AATA
1 TAACATAGTACACAAATA
70921169 TAACATAGTACACAAATA
1 TAACATAGTACACAAATA
70921187 TAA
1 TAA
70921190 TTAGCTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (18 bp):
TAACATAGTACACAAATA
Found at i:70923058 original size:32 final size:31
Alignment explanation
Indices: 70922993--70923059 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
70922983 ACTTTAAATT
* * *
70922993 ATTAATTCTAATTATTTTAATATTTTATTTA
1 ATTAATTCTAATTATTTTAATATCTAATCTA
70923024 ATTAATTCCTAATTA-TTTAATTATCTAATCTA
1 ATTAATT-CTAATTATTTTAA-TATCTAATCTA
70923056 ATTA
1 ATTA
70923060 CGGTTTTCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 12 0.39
32 19 0.61
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.55
Consensus pattern (31 bp):
ATTAATTCTAATTATTTTAATATCTAATCTA
Found at i:70933581 original size:19 final size:19
Alignment explanation
Indices: 70933554--70933592 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
70933544 ACTATATATG
*
70933554 TATTATTTTTTTTCTTTTT
1 TATTATTTTCTTTCTTTTT
*
70933573 TATTTTTTTCTTTCTTTTT
1 TATTATTTTCTTTCTTTTT
70933592 T
1 T
70933593 TGATGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (19 bp):
TATTATTTTCTTTCTTTTT
Found at i:70933593 original size:15 final size:14
Alignment explanation
Indices: 70933559--70933593 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
70933549 ATATGTATTA
70933559 TTTTTTTTCTTTTT
1 TTTTTTTTCTTTTT
*
70933573 TATTTTTTTCTTTCT
1 T-TTTTTTTCTTTTT
70933588 TTTTTT
1 TTTTTT
70933594 GATGATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTTCTTTTT
Found at i:70934638 original size:5 final size:5
Alignment explanation
Indices: 70934607--70934655 Score: 64
Period size: 5 Copynumber: 9.4 Consensus size: 5
70934597 ATAAAAATTG
70934607 AAATA AAACTA AAA-A CAAATAA AAATA AAATA AAATA AAATA AAATA
1 AAATA AAA-TA AAATA -AAAT-A AAATA AAATA AAATA AAATA AAATA
70934654 AA
1 AA
70934656 TAGACTCAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 1 0.03
5 29 0.73
6 9 0.22
7 1 0.03
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:70936266 original size:13 final size:14
Alignment explanation
Indices: 70936248--70936276 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70936238 AATAAAGCAG
70936248 TAAAAATAA-ATAA
1 TAAAAATAAGATAA
70936261 TAAAAATAAGATAA
1 TAAAAATAAGATAA
70936275 TA
1 TA
70936277 TGAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (14 bp):
TAAAAATAAGATAA
Found at i:70939412 original size:38 final size:38
Alignment explanation
Indices: 70939370--70939457 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 38
70939360 GTCCAACCCA
* *
70939370 ACACACCATGTGGGGATAAAATCGACCCACCCATCCCT
1 ACACACCATATGGGGATAAAATCAACCCACCCATCCCT
* *
70939408 ACACACCATATATGGGGATACAATCAACCCATCCATCCCT
1 ACACACC--ATATGGGGATAAAATCAACCCACCCATCCCT
70939448 ACACACCATA
1 ACACACCATA
70939458 AGGTACTGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
38 10 0.23
40 34 0.77
ACGTcount: A:0.35, C:0.36, G:0.11, T:0.17
Consensus pattern (38 bp):
ACACACCATATGGGGATAAAATCAACCCACCCATCCCT
Found at i:70939438 original size:40 final size:40
Alignment explanation
Indices: 70939380--70939457 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
70939370 ACACACCATG
*
70939380 TGGGGATAAAATCGACCCACCCATCCCTACACACCATATA
1 TGGGGATAAAATCAACCCACCCATCCCTACACACCATATA
* *
70939420 TGGGGATACAATCAACCCATCCATCCCTACACACCATA
1 TGGGGATAAAATCAACCCACCCATCCCTACACACCATA
70939458 AGGTACTGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.36, G:0.12, T:0.18
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCATCCCTACACACCATATA
Found at i:70942519 original size:18 final size:18
Alignment explanation
Indices: 70942496--70942546 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
70942486 TGGTAGAAGC
70942496 AAACAAAAA-AAAATTAGA
1 AAACAAAAATAAAATTA-A
* *
70942514 AAACAAAAATTAAACTAA
1 AAACAAAAATAAAATTAA
70942532 AAACAAAAATAAAAT
1 AAACAAAAATAAAAT
70942547 GCAATAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (18 bp):
AAACAAAAATAAAATTAA
Found at i:70942784 original size:28 final size:29
Alignment explanation
Indices: 70942749--70942807 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
70942739 ATTACTATTT
70942749 TTTTATTATATAG-CGATAAATTGAGGAA
1 TTTTATTATATAGTCGATAAATTGAGGAA
*
70942777 TTTTATTATCTAGTCGATAAATTGAGGAA
1 TTTTATTATATAGTCGATAAATTGAGGAA
70942806 TT
1 TT
70942808 GTTTTTAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (29 bp):
TTTTATTATATAGTCGATAAATTGAGGAA
Found at i:70946474 original size:34 final size:34
Alignment explanation
Indices: 70946431--70946499 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
70946421 TGGGTGAGGG
70946431 GTGTTACAATTCTCTTGGTTATTATATCAATTTT
1 GTGTTACAATTCTCTTGGTTATTATATCAATTTT
70946465 GTGTTACAATTCTCTTGGTTATTATATCAATTTT
1 GTGTTACAATTCTCTTGGTTATTATATCAATTTT
70946499 G
1 G
70946500 AAAATACTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.52
Consensus pattern (34 bp):
GTGTTACAATTCTCTTGGTTATTATATCAATTTT
Found at i:70947001 original size:27 final size:26
Alignment explanation
Indices: 70946971--70947025 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
70946961 AAAAAAATCG
*
70946971 TTAAAAGT-TAAAAAATTGTAAAAATTA
1 TTAAAAGTGTAAAAAAAT-T-AAAATTA
70946998 TTAAAAGTGTAAAAAAATTAAAATTA
1 TTAAAAGTGTAAAAAAATTAAAATTA
70947024 TT
1 TT
70947026 TTGGAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 9 0.35
27 9 0.35
28 8 0.31
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (26 bp):
TTAAAAGTGTAAAAAAATTAAAATTA
Found at i:70947017 original size:17 final size:18
Alignment explanation
Indices: 70946982--70947020 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
70946972 TAAAAGTTAA
* *
70946982 AAAATTGTAAAAATTATT
1 AAAAGTGTAAAAATAATT
70947000 AAAAGTGTAAAAA-AATT
1 AAAAGTGTAAAAATAATT
70947017 AAAA
1 AAAA
70947021 TTATTTTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (18 bp):
AAAAGTGTAAAAATAATT
Found at i:70947115 original size:18 final size:19
Alignment explanation
Indices: 70947087--70947134 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
70947077 ACTTACTTAT
*
70947087 TAAAAATATTAAAAAATTG
1 TAAAAATATTAAAAAATTA
*
70947106 TAAAAA-ATTATAAAATTA
1 TAAAAATATTAAAAAATTA
*
70947124 TAAAATTATTA
1 TAAAAATATTA
70947135 TTTTGGGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAAAATATTAAAAAATTA
Found at i:70947335 original size:61 final size:56
Alignment explanation
Indices: 70947253--70947365 Score: 138
Period size: 56 Copynumber: 1.9 Consensus size: 56
70947243 GCAATTTTTA
*
70947253 TAATTTTTTTACAAGTTTTTAAAGTTTTTAATAAGTAAGTTCTACAATTTTCTATAAATTT
1 TAATTTTTTTACAAGTTTTT-AA-TATTTAA-AA-TAAGTT-TACAATTTTCTATAAATTT
* *
70947314 TAATTATTTTTCCAA-TTTTTAATATTTAAAATAAGTTTACAATTTTTTATAA
1 TAATT-TTTTTACAAGTTTTTAATATTTAAAATAAGTTTACAATTTTCTATAA
70947366 TATTAAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
56 14 0.29
57 6 0.12
58 2 0.04
59 6 0.12
60 2 0.04
61 10 0.21
62 8 0.17
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (56 bp):
TAATTTTTTTACAAGTTTTTAATATTTAAAATAAGTTTACAATTTTCTATAAATTT
Found at i:70947379 original size:27 final size:26
Alignment explanation
Indices: 70947295--70947396 Score: 71
Period size: 27 Copynumber: 3.7 Consensus size: 26
70947285 AAGTAAGTTC
* *
70947295 TACAATTTTCTATAAATTTTAATTATTTT
1 TACAATTTTTTAT-AA-TTTAA-AATTTT
* * *
70947324 TCCAATTTTTAAT-ATTTAAAATAAGTT
1 TACAATTTTTTATAATTTAAAAT--TTT
70947351 TACAATTTTTTATAATATTAAAATTTT
1 TACAATTTTTTATAAT-TTAAAATTTT
* * *
70947378 TAAAATATTTTACAATTTA
1 TACAATTTTTTATAATTTA
70947397 TTTTTACATT
Statistics
Matches: 58, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
25 2 0.03
26 8 0.14
27 29 0.50
28 2 0.03
29 17 0.29
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.53
Consensus pattern (26 bp):
TACAATTTTTTATAATTTAAAATTTT
Found at i:70950678 original size:56 final size:56
Alignment explanation
Indices: 70950618--70950921 Score: 502
Period size: 56 Copynumber: 5.4 Consensus size: 56
70950608 TCCCAGACAA
* *
70950618 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
*
70950674 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAAC-TATTAAGCGT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * *
70950729 GGTCTTACTCGTACACATATATTGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* *
70950785 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACATATTAAACAT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
** *
70950841 GGTCTTACTCGCACACATATATCGAAATCACATATTAATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
70950897 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
70950922 TGCCATGGTC
Statistics
Matches: 230, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
55 51 0.22
56 179 0.78
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:70950745 original size:111 final size:112
Alignment explanation
Indices: 70950618--70950921 Score: 520
Period size: 111 Copynumber: 2.7 Consensus size: 112
70950608 TCCCAGACAA
*
70950618 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
* *
70950683 CGCACACATATATCGAAATCACATATCGATGCCAAC-TATTAAGCGT
66 CGCACACATATATCGAAATCACATATCGATGCCAACATATTAAACAT
* *
70950729 GGTCTTACTCGTACACATATATTGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
70950794 CGCACACATATATCGAAATCACATATCGATGCCAACATATTAAACAT
66 CGCACACATATATCGAAATCACATATCGATGCCAACATATTAAACAT
** * *
70950841 GGTCTTACTCGCACACATATATCGAAATCACATATTAATGCCAATGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
70950906 CGCACACATATATCGA
66 CGCACACATATATCGA
70950922 TGCCATGGTC
Statistics
Matches: 181, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
111 98 0.54
112 83 0.46
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (112 bp):
GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
CGCACACATATATCGAAATCACATATCGATGCCAACATATTAAACAT
Found at i:70951774 original size:16 final size:17
Alignment explanation
Indices: 70951753--70951786 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
70951743 GAACCCTAAG
70951753 CTTTTTTTCTTAT-TTT
1 CTTTTTTTCTTATATTT
*
70951769 CTTTTTTTTTTATATTT
1 CTTTTTTTCTTATATTT
70951786 C
1 C
70951787 AGTCATGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTTTCTTATATTT
Found at i:70952772 original size:5 final size:5
Alignment explanation
Indices: 70952762--70952790 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
70952752 AAAATTTACA
70952762 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
70952791 TGATGTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:70962083 original size:42 final size:43
Alignment explanation
Indices: 70961994--70962097 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 43
70961984 AATGCCAACA
* *
70961994 TCCCAGAC-GTGGTCATACATGTAATCAAATATCGATGTCACTG
1 TCCCAGACAG-GGTCTTACATGAAATCAAATATCGATGTCACTG
*
70962037 TCCCAGACAGGGTCTTACATGAAATCTAATA-CGATGTCGA-TG
1 TCCCAGACAGGGTCTTACATGAAATCAAATATCGATGTC-ACTG
*
70962079 TCCCAGACATGGTCTTACA
1 TCCCAGACAGGGTCTTACA
70962098 CATAAATCTC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
42 27 0.49
43 27 0.49
44 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACATGAAATCAAATATCGATGTCACTG
Found at i:70963929 original size:25 final size:25
Alignment explanation
Indices: 70963887--70963935 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
70963877 TCTAGCACTT
*
70963887 TTGGTATAAGTTAGAAATATTGGTA
1 TTGGTATAAGTTAAAAATATTGGTA
* *
70963912 TTGGTATAATTTAAAAATTTTGGT
1 TTGGTATAAGTTAAAAATATTGGT
70963936 TTGCCAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (25 bp):
TTGGTATAAGTTAAAAATATTGGTA
Found at i:70969842 original size:20 final size:20
Alignment explanation
Indices: 70969819--70969856 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70969809 ATAAGTTTTA
70969819 TTTATCATTACAA-TATAATT
1 TTTAT-ATTACAATTATAATT
*
70969839 TTTATATTTCAATTATAA
1 TTTATATTACAATTATAA
70969857 ATTATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTATATTACAATTATAATT
Found at i:70970340 original size:30 final size:30
Alignment explanation
Indices: 70970285--70970342 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
70970275 GTAGATTTTG
* *
70970285 AGTGTCTCTATAAAGATTATCTTTATCAAA
1 AGTGTCCCTATAAAGATTATATTTATCAAA
70970315 AGTGTCCCTATAAAGATT-TAATTTATCA
1 AGTGTCCCTATAAAGATTAT-ATTTATCA
70970343 TGAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (30 bp):
AGTGTCCCTATAAAGATTATATTTATCAAA
Found at i:70978268 original size:25 final size:25
Alignment explanation
Indices: 70978239--70978304 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
70978229 ATTATCATGG
*
70978239 TTTTATCCACAGTTTTATGGTTTTA
1 TTTTATCCACAATTTTATGGTTTTA
*
70978264 TTTTATCTACAATTTTATGGTTTTA
1 TTTTATCCACAATTTTATGGTTTTA
* *
70978289 TTTTGTCCACATTTTT
1 TTTTATCCACAATTTT
70978305 CGTGATTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.12, G:0.09, T:0.59
Consensus pattern (25 bp):
TTTTATCCACAATTTTATGGTTTTA
Found at i:70979127 original size:18 final size:18
Alignment explanation
Indices: 70979090--70979140 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
70979080 ATGATATGGG
*
70979090 TGTGAATAT-ATTTCGGT
1 TGTGAATATAATTTTGGT
*
70979107 TGTGAATATAATTTTGTT
1 TGTGAATATAATTTTGGT
*
70979125 TGT-AATGTAGATTTTG
1 TGTGAATATA-ATTTTG
70979141 ATTATAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.25, C:0.02, G:0.22, T:0.51
Consensus pattern (18 bp):
TGTGAATATAATTTTGGT
Found at i:70979481 original size:15 final size:15
Alignment explanation
Indices: 70979431--70979482 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
70979421 ACGGATTCAC
* *
70979431 ATAATTTTGAATTTT
1 ATAATTTTAAATATT
*
70979446 ATAAGTTATAAATATT
1 ATAA-TTTTAAATATT
* *
70979462 TTAATTTTAAATATA
1 ATAATTTTAAATATT
70979477 ATAATT
1 ATAATT
70979483 CATTTTATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (15 bp):
ATAATTTTAAATATT
Found at i:70980848 original size:39 final size:40
Alignment explanation
Indices: 70980805--70980890 Score: 111
Period size: 39 Copynumber: 2.1 Consensus size: 40
70980795 TAAAAACTAT
* * *
70980805 ATATAATAAAATATTAATTATATTAAT-TTGTGTTTTTTA
1 ATATAATAAAACATTAATTATATTAATATAGTGTTCTTTA
* *
70980844 ATATAATAAAACATTTATTATATTTATGATAGTGTTCTTTA
1 ATATAATAAAACATTAATTATATTAAT-ATAGTGTTCTTTA
70980885 ATATAA
1 ATATAA
70980891 ATACTTTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 24 0.60
41 16 0.40
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (40 bp):
ATATAATAAAACATTAATTATATTAATATAGTGTTCTTTA
Found at i:70982857 original size:63 final size:63
Alignment explanation
Indices: 70982787--70982911 Score: 250
Period size: 63 Copynumber: 2.0 Consensus size: 63
70982777 ACCAAATACC
70982787 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTATGTTTCTGATTTTAGGGGAT
1 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTATGTTTCTGATTTTAGGGGAT
70982850 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTATGTTTCTGATTTTAGGGGA
1 ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTATGTTTCTGATTTTAGGGGA
70982912 GATGATAAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (63 bp):
ATAAAATCATATCTCATAAAATCAGGATTTAAATAGGATATTATGTTTCTGATTTTAGGGGAT
Found at i:70983431 original size:92 final size:92
Alignment explanation
Indices: 70983268--70983450 Score: 312
Period size: 92 Copynumber: 2.0 Consensus size: 92
70983258 ATAGGGTTGT
* *
70983268 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAATGTATA
1 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
70983333 ACTACTACTTCTAGAGAGATGATAACA
66 ACTACTACTTCTAGAGAGATGATAACA
70983360 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
1 GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
* * * *
70983425 ATTACTAGTTGTTGAGAGATGATAAC
66 ACTACTACTTCTAGAGAGATGATAAC
70983451 TGTAGTCATC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 85 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (92 bp):
GTATATACATTCTCTCAACCTTTTTCTCTCTATTTCTTCACAAATGTATAATGCAATAAGGCATA
ACTACTACTTCTAGAGAGATGATAACA
Found at i:70988430 original size:16 final size:18
Alignment explanation
Indices: 70988391--70988431 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
70988381 TCTAACATTA
70988391 GAACAATTATCAAGTCTCT
1 GAACAATTATCAAG-CTCT
*
70988410 TAACAA-TATCAA-CTCT
1 GAACAATTATCAAGCTCT
70988426 GAACAA
1 GAACAA
70988432 CATGGAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 9 0.45
18 6 0.30
19 5 0.25
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (18 bp):
GAACAATTATCAAGCTCT
Found at i:70992377 original size:2 final size:2
Alignment explanation
Indices: 70992370--70992402 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
70992360 ATTTTTATAA
*
70992370 CT CT CT CT CT CT CT GT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
70992403 ACACACACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.03, T:0.48
Consensus pattern (2 bp):
CT
Found at i:70993950 original size:17 final size:16
Alignment explanation
Indices: 70993928--70993974 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
70993918 TTTTATGTGT
70993928 TTTTTAATTTATTATAA
1 TTTTTAATTT-TTATAA
70993945 TTTTTAAATTTTTATAA
1 TTTTT-AATTTTTATAA
70993962 TTTTATAATTTTT
1 TTTT-TAATTTTT
70993975 TTAAAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTTAATTTTTATAA
Found at i:71000308 original size:16 final size:18
Alignment explanation
Indices: 71000289--71000321 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
71000279 TTATAAAGGT
71000289 TAATTAA-G-TAAAATAG
1 TAATTAATGATAAAATAG
71000305 TAATTAATGATAAAATA
1 TAATTAATGATAAAATA
71000322 AATAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (18 bp):
TAATTAATGATAAAATAG
Found at i:71012814 original size:67 final size:63
Alignment explanation
Indices: 71012699--71012844 Score: 202
Period size: 67 Copynumber: 2.3 Consensus size: 63
71012689 ATATATGATT
* * * *
71012699 GTTGAAATGTAAGATTATTTAGCATATTACTAGGTATATTATACTACCTTCTTCTTTTTTTCATT
1 GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATACTA-C--CTT-TTTTTTTCATT
71012764 TG
62 TG
*
71012766 GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATATTACCTTTTTTTTTCATTTG
1 GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATACTACCTTTTTTTTTCATTTG
*
71012829 GTTAGAATGTAAGATT
1 GTTGGAATGTAAGATT
71012845 TTGCTATTTG
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
63 28 0.38
64 3 0.04
66 1 0.01
67 41 0.56
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (63 bp):
GTTGGAATGTAAGATTACTTAGCACATTACTAAGTATATTATACTACCTTTTTTTTTCATTTG
Found at i:71016080 original size:46 final size:45
Alignment explanation
Indices: 71016030--71016205 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
71016020 TGGTTGAGCA
71016030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
71016076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
71016123 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
71016169 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71016206 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:71016186 original size:93 final size:93
Alignment explanation
Indices: 71016027--71016197 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
71016017 GGATGGTTGA
* *
71016027 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71016092 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
71016120 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71016185 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71016198 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:71018537 original size:20 final size:18
Alignment explanation
Indices: 71018498--71018537 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
71018488 AAATTTCTGG
*
71018498 AAAATATTTTTCCCTTTA
1 AAAATATTTTTCCCTCTA
71018516 AAAATATATTTTCCCATCTA
1 AAAATAT-TTTTCCC-TCTA
71018536 AA
1 AA
71018538 CTCAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATATTTTTCCCTCTA
Found at i:71022340 original size:22 final size:22
Alignment explanation
Indices: 71022276--71022340 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
71022266 AAAATAGAAA
71022276 CAGAGCATAAT-AGATATAGATG
1 CAGAGCAT-ATCAGATATAGATG
* **
71022298 CAGAGCATATCAAATGCAGATG
1 CAGAGCATATCAGATATAGATG
*
71022320 CAGAGCATATCGGATATAGAT
1 CAGAGCATATCAGATATAGAT
71022341 TCAAAGTTCT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (22 bp):
CAGAGCATATCAGATATAGATG
Found at i:71023903 original size:69 final size:69
Alignment explanation
Indices: 71023807--71023999 Score: 264
Period size: 69 Copynumber: 2.8 Consensus size: 69
71023797 AGTTTTCCTC
* * * * *
71023807 ATGGAAAATGCCATACATACATTTCATAACTCAGTATGGAAAATACCATACCTACAG-ATCATAG
1 ATGG-AAATACCATACCTACATATCATAGCTCGGTATGG-AAATACCATACCTACAGTATCATAG
*
71023871 CTCGGT
64 CTCAGT
*
71023877 ATGGAAATACCATACCTACGTATCATAGCTCGGTATGGAAATACCATACCTAC-GTATCATAGCT
1 ATGGAAATACCATACCTACATATCATAGCTCGGTATGGAAATACCATACCTACAGTATCATAGCT
*
71023941 TAGT
66 CAGT
*
71023945 ATGGATAATACCATACCTACATATCATAGCTTGGTATGGAAATACCATACCTACA
1 ATGGA-AATACCATACCTACATATCATAGCTCGGTATGGAAATACCATACCTACA
71024000 TTTCACATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
67 1 0.01
68 31 0.28
69 74 0.67
70 4 0.04
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (69 bp):
ATGGAAATACCATACCTACATATCATAGCTCGGTATGGAAATACCATACCTACAGTATCATAGCT
CAGT
Found at i:71023996 original size:103 final size:104
Alignment explanation
Indices: 71023807--71023998 Score: 296
Period size: 103 Copynumber: 1.9 Consensus size: 104
71023797 AGTTTTCCTC
* *
71023807 ATGGAAAATGCCATACATACATTTCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
1 ATGGAAAATACCATACATACATATCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
71023872 TCGGTATGGAAATACCATACCTACGTATCATAGCTCGGT
66 TCGGTATGGAAATACCATACCTACGTATCATAGCTCGGT
* * * * * *
71023911 ATGG-AAATACCATACCTACGTATCATAGCTTAGTATGGATAATACCATACCTACATATCATAGC
1 ATGGAAAATACCATACATACATATCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
*
71023975 TTGGTATGGAAATACCATACCTAC
66 TCGGTATGGAAATACCATACCTAC
71023999 ATTTCACATT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
103 75 0.95
104 4 0.05
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (104 bp):
ATGGAAAATACCATACATACATATCATAACTCAGTATGGAAAATACCATACCTACAGATCATAGC
TCGGTATGGAAATACCATACCTACGTATCATAGCTCGGT
Found at i:71024000 original size:34 final size:34
Alignment explanation
Indices: 71023807--71024000 Score: 262
Period size: 34 Copynumber: 5.6 Consensus size: 34
71023797 AGTTTTCCTC
* * * * *
71023807 ATGGAAAATGCCATACATACATTTCATAACTCAGT
1 ATGG-AAATACCATACCTACATATCATAGCTCGGT
*
71023842 ATGGAAAATACCATACCTACAGATCATAGCTCGGT
1 ATGG-AAATACCATACCTACATATCATAGCTCGGT
*
71023877 ATGGAAATACCATACCTACGTATCATAGCTCGGT
1 ATGGAAATACCATACCTACATATCATAGCTCGGT
* **
71023911 ATGGAAATACCATACCTACGTATCATAGCTTAGT
1 ATGGAAATACCATACCTACATATCATAGCTCGGT
*
71023945 ATGGATAATACCATACCTACATATCATAGCTTGGT
1 ATGGA-AATACCATACCTACATATCATAGCTCGGT
71023980 ATGGAAATACCATACCTACAT
1 ATGGAAATACCATACCTACAT
71024001 TTCACATTTT
Statistics
Matches: 146, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
34 81 0.55
35 65 0.45
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (34 bp):
ATGGAAATACCATACCTACATATCATAGCTCGGT
Found at i:71024018 original size:34 final size:34
Alignment explanation
Indices: 71023842--71024019 Score: 151
Period size: 34 Copynumber: 5.2 Consensus size: 34
71023832 ATAACTCAGT
* * * **
71023842 ATGGAAAATACCATACCTACAGATCATAGCTCGGT
1 ATGG-AAATACCATACCTACATATCACAGCTTGCC
* * * **
71023877 ATGGAAATACCATACCTACGTATCATAGCTCGGT
1 ATGGAAATACCATACCTACATATCACAGCTTGCC
* * *
71023911 ATGGAAATACCATACCTACGTATCATAGCTTAG-T
1 ATGGAAATACCATACCTACATATCACAGCTT-GCC
* **
71023945 ATGGATAATACCATACCTACATATCATAGCTTGGT
1 ATGGA-AATACCATACCTACATATCACAGCTTGCC
* **
71023980 ATGGAAATACCATACCTACATTTCACATTTTGCC
1 ATGGAAATACCATACCTACATATCACAGCTTGCC
71024014 ATGGAA
1 ATGGAA
71024020 CAACCATGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
34 94 0.72
35 36 0.28
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (34 bp):
ATGGAAATACCATACCTACATATCACAGCTTGCC
Found at i:71027649 original size:15 final size:16
Alignment explanation
Indices: 71027617--71027651 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
71027607 TATTACATTA
71027617 AAAATATTTAAATTTT
1 AAAATATTTAAATTTT
*
71027633 AAAATATTT-ATTTTT
1 AAAATATTTAAATTTT
71027648 AAAA
1 AAAA
71027652 AGTTTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAAATATTTAAATTTT
Found at i:71027652 original size:16 final size:17
Alignment explanation
Indices: 71027614--71027652 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
71027604 CTTTATTACA
71027614 TTAAAAATATTTAAATT
1 TTAAAAATATTTAAATT
*
71027631 TT-AAAATATTT-ATTT
1 TTAAAAATATTTAAATT
71027646 TTAAAAA
1 TTAAAAA
71027653 GTTTTAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 13 0.65
17 2 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAAAATATTTAAATT
Found at i:71035301 original size:34 final size:35
Alignment explanation
Indices: 71035251--71035488 Score: 109
Period size: 34 Copynumber: 6.7 Consensus size: 35
71035241 ACGAAAGAGT
* *
71035251 TTGTGCCCAGTGCTAGTCGGATAAA-TCGACA-AA-
1 TTGTGCCCAGCGCTAGTCGGATAAACTAGA-AGAAG
* *
71035284 TGTGTGCCCAGCACTAGTCAGATAAACTAGAAGAAG
1 T-TGTGCCCAGCGCTAGTCGGATAAACTAGAAGAAG
* *
71035320 TTGCGCCCAGCGCTAGTCGGATAAACTGATGAA-ATAA
1 TTGTGCCCAGCGCTAGTCGGATAAACT-A-GAAGA-AG
* * * * **
71035357 TTAGTGAGCCCAGCTCTAGTTGGATAAACCA-ATGATC
1 TT-GT--GCCCAGCGCTAGTCGGATAAACTAGAAGAAG
** * * *
71035394 TT-TGGCCCAATGCTGGTCAGATAAAC-CGAAGAATG
1 TTGT-GCCCAGCGCTAGTCGGATAAACTAGAAGAA-G
* * *
71035429 TTG-GCCCAACACTAGTCAGATAAACTGACGAA-AA-
1 TTGTGCCCAGCGCTAGTCGGATAAACT-A-GAAGAAG
*
71035463 TTGTACCCAGCGCTAGTCGGATAAAC
1 TTGTGCCCAGCGCTAGTCGGATAAAC
71035489 CGACAATATT
Statistics
Matches: 153, Mismatches: 34, Indels: 34
0.69 0.15 0.15
Matches are distributed among these distances:
33 1 0.01
34 63 0.41
35 49 0.32
36 5 0.03
37 12 0.08
38 2 0.01
39 1 0.01
40 20 0.13
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (35 bp):
TTGTGCCCAGCGCTAGTCGGATAAACTAGAAGAAG
Found at i:71035513 original size:143 final size:144
Alignment explanation
Indices: 71035250--71035531 Score: 344
Period size: 143 Copynumber: 2.0 Consensus size: 144
71035240 TACGAAAGAG
* * * *
71035250 TTTGTGCCCAGTGCTAGTCGGATAAATCGACAAATGTGTGCCCAGCACTAGTCAGATAAACTAGA
1 TTTGTGCCCAATGCTAGTCAGATAAACCGACAAATGTGTGCCCAACACTAGTCAGATAAACTAGA
* * * *
71035315 AGAAGTTGCGCCCAGCGCTAGTCGGATAAACTGATGAAATAATTAGTGAGCCCAGCTCTAGTTGG
66 AGAAGTTGCACCCAGCGCTAGTCGGATAAACCGATCAAATAAATAGTGAGCCCAGCTCTAGTTGG
71035380 ATAAACCAATGATC
131 ATAAACCAATGATC
*
71035394 TTTG-GCCCAATGCTGGTCAGATAAACCGA-AGAATGT-TGGCCCAACACTAGTCAGATAAACTG
1 TTTGTGCCCAATGCTAGTCAGATAAACCGACA-AATGTGT-GCCCAACACTAGTCAGATAAACT-
* *
71035456 ACGAA-AA-TTGTACCCAGCGCTAGTCGGATAAACCGA-CAATATTAAAT-GTGAGCCCAGCTTT
63 A-GAAGAAGTTGCACCCAGCGCTAGTCGGATAAACCGATCAA-A-TAAATAGTGAGCCCAGCTCT
* *
71035517 AGTTGGTTTAACCAA
125 AGTTGGATAAACCAA
71035532 CAAATTGACA
Statistics
Matches: 119, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
142 4 0.03
143 101 0.85
144 11 0.09
145 3 0.03
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (144 bp):
TTTGTGCCCAATGCTAGTCAGATAAACCGACAAATGTGTGCCCAACACTAGTCAGATAAACTAGA
AGAAGTTGCACCCAGCGCTAGTCGGATAAACCGATCAAATAAATAGTGAGCCCAGCTCTAGTTGG
ATAAACCAATGATC
Found at i:71038822 original size:26 final size:25
Alignment explanation
Indices: 71038793--71038844 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
71038783 ACTTTTGCTA
71038793 AGGGACT-TTTGATGAAAATGTGAAAT
1 AGGGACTATTTG-TG-AAATGTGAAAT
71038819 AGGGACTAATTTGTGAAATGTGAAAT
1 AGGGACT-ATTTGTGAAATGTGAAAT
71038845 TTATGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 18 0.75
27 2 0.08
28 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (25 bp):
AGGGACTATTTGTGAAATGTGAAAT
Found at i:71048774 original size:23 final size:23
Alignment explanation
Indices: 71048748--71048845 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
71048738 ATAAGTGCCA
71048748 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
71048771 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
71048794 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
71048816 CACTGAAATGTAGCCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
71048839 CACTGAT
1 CACTGAT
71048846 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:71048813 original size:45 final size:45
Alignment explanation
Indices: 71048755--71048843 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
71048745 CCACACTGAT
* *
71048755 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
*
71048800 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGTTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
71048844 ATCAATAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.20
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:71050664 original size:5 final size:5
Alignment explanation
Indices: 71050656--71050714 Score: 118
Period size: 5 Copynumber: 11.8 Consensus size: 5
71050646 AGTAAACTAT
71050656 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
71050706 TATAA TATA
1 TATAA TATA
71050715 TTTATTTATT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:71050851 original size:15 final size:15
Alignment explanation
Indices: 71050832--71050884 Score: 70
Period size: 15 Copynumber: 3.4 Consensus size: 15
71050822 TTATTTATTT
71050832 TATATTTATAATAATAA
1 TATA-TTATAAT-ATAA
*
71050849 TATAATATAATATAA
1 TATATTATAATATAA
*
71050864 TATATAATAATATAA
1 TATATTATAATATAA
71050879 TATATT
1 TATATT
71050885 TACTTATAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 22 0.69
16 6 0.19
17 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATTATAATATAA
Found at i:71050853 original size:5 final size:5
Alignment explanation
Indices: 71050838--71050882 Score: 65
Period size: 5 Copynumber: 8.8 Consensus size: 5
71050828 ATTTTATATT
71050838 TATAA TAATAA TATAA TATAA TATAA TAT-A TAATAA TATAA TATA
1 TATAA T-ATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATA
71050883 TTTACTTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 2 0.05
5 28 0.76
6 7 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:71050915 original size:23 final size:24
Alignment explanation
Indices: 71050832--71050915 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 24
71050822 TTATTTATTT
71050832 TATATTTA-TA-ATAATAATATAA
1 TATATTTACTATATAATAATATAA
* *
71050854 TATAATATAATATATAATAATATAA
1 TAT-ATTTACTATATAATAATATAA
71050879 TATATTTACT-TATAAGTAA-ATAA
1 TATATTTACTATATAA-TAATATAA
71050902 TA-A-TTACTAATATA
1 TATATTTACT-ATATA
71050916 TGTATTTAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
21 5 0.09
22 4 0.08
23 19 0.36
24 10 0.19
25 15 0.28
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (24 bp):
TATATTTACTATATAATAATATAA
Found at i:71051119 original size:15 final size:15
Alignment explanation
Indices: 71051100--71051152 Score: 70
Period size: 15 Copynumber: 3.4 Consensus size: 15
71051090 TTATTTATTT
71051100 TATATTTATAATAATAA
1 TATA-TTATAAT-ATAA
*
71051117 TATAATATAATATAA
1 TATATTATAATATAA
*
71051132 TATATAATAATATAA
1 TATATTATAATATAA
71051147 TATATT
1 TATATT
71051153 TACTTATAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 22 0.69
16 6 0.19
17 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATTATAATATAA
Found at i:71051121 original size:5 final size:5
Alignment explanation
Indices: 71051106--71051150 Score: 65
Period size: 5 Copynumber: 8.8 Consensus size: 5
71051096 ATTTTATATT
71051106 TATAA TAATAA TATAA TATAA TATAA TAT-A TAATAA TATAA TATA
1 TATAA T-ATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATA
71051151 TTTACTTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 2 0.05
5 28 0.76
6 7 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:71051169 original size:268 final size:268
Alignment explanation
Indices: 71050692--71051227 Score: 1054
Period size: 268 Copynumber: 2.0 Consensus size: 268
71050682 ATAATATAAT
71050692 ATAATATAATATAATATAATATATTTATTTATTCTTAAATACTAAGTAAATGTATATGTATACTA
1 ATAATATAATATAATATAATATATTTATTTATTCTTAAATACTAAGTAAATGTATATGTATACTA
*
71050757 CAAATGTATGTATGTATTTATTACACTTGTACATTTTTATTACCATACAATTGTATTAATTTGAT
66 CAAATATATGTATGTATTTATTACACTTGTACATTTTTATTACCATACAATTGTATTAATTTGAT
71050822 TTATTTATTTTATATTTATAATAATAATATAATATAATATAATATATAATAATATAATATATTTA
131 TTATTTATTTTATATTTATAATAATAATATAATATAATATAATATATAATAATATAATATATTTA
71050887 CTTATAAGTAAATAATAATTACTAATATATGTATTTAATTAATCCACAAGTCACCACCATCTCTA
196 CTTATAAGTAAATAATAATTACTAATATATGTATTTAATTAATCCACAAGTCACCACCATCTCTA
71050952 TACACTTG
261 TACACTTG
71050960 ATAATATAATATAATATAATATATTTATTTATTCTTAAATACTAAGTAAATGTATATGTATACTA
1 ATAATATAATATAATATAATATATTTATTTATTCTTAAATACTAAGTAAATGTATATGTATACTA
*
71051025 CAAATATATTTATGTATTTATTACACTTGTACATTTTTATTACCATACAATTGTATTAATTTGAT
66 CAAATATATGTATGTATTTATTACACTTGTACATTTTTATTACCATACAATTGTATTAATTTGAT
71051090 TTATTTATTTTATATTTATAATAATAATATAATATAATATAATATATAATAATATAATATATTTA
131 TTATTTATTTTATATTTATAATAATAATATAATATAATATAATATATAATAATATAATATATTTA
71051155 CTTATAAGTAAATAATAATTACTAATATATGTATTTAATTAATCCACAAGTCACCACCATCTCTA
196 CTTATAAGTAAATAATAATTACTAATATATGTATTTAATTAATCCACAAGTCACCACCATCTCTA
71051220 TACACTTG
261 TACACTTG
71051228 TCATGTTTTG
Statistics
Matches: 266, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
268 266 1.00
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (268 bp):
ATAATATAATATAATATAATATATTTATTTATTCTTAAATACTAAGTAAATGTATATGTATACTA
CAAATATATGTATGTATTTATTACACTTGTACATTTTTATTACCATACAATTGTATTAATTTGAT
TTATTTATTTTATATTTATAATAATAATATAATATAATATAATATATAATAATATAATATATTTA
CTTATAAGTAAATAATAATTACTAATATATGTATTTAATTAATCCACAAGTCACCACCATCTCTA
TACACTTG
Found at i:71051183 original size:23 final size:24
Alignment explanation
Indices: 71051100--71051183 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 24
71051090 TTATTTATTT
71051100 TATATTTA-TA-ATAATAATATAA
1 TATATTTACTATATAATAATATAA
* *
71051122 TATAATATAATATATAATAATATAA
1 TAT-ATTTACTATATAATAATATAA
71051147 TATATTTACT-TATAAGTAA-ATAA
1 TATATTTACTATATAA-TAATATAA
71051170 TA-A-TTACTAATATA
1 TATATTTACT-ATATA
71051184 TGTATTTAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
21 5 0.09
22 4 0.08
23 19 0.36
24 10 0.19
25 15 0.28
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (24 bp):
TATATTTACTATATAATAATATAA
Found at i:71053307 original size:26 final size:26
Alignment explanation
Indices: 71053278--71053385 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
71053268 TGGTACAAAT
71053278 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
71053304 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
71053330 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
71053356 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
71053382 TGAT
1 TGAT
71053386 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:71055104 original size:27 final size:27
Alignment explanation
Indices: 71055007--71055111 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
71054997 AGGAAGCGTC
*
71055007 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
71055034 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
71055061 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
71055088 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
71055112 GCAGCCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:71057516 original size:17 final size:17
Alignment explanation
Indices: 71057494--71057528 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
71057484 TTGCACAACC
71057494 TTGATGAAGAAGTTTAT
1 TTGATGAAGAAGTTTAT
71057511 TTGATGAAGAAGTTTAT
1 TTGATGAAGAAGTTTAT
71057528 T
1 T
71057529 AGTTTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (17 bp):
TTGATGAAGAAGTTTAT
Found at i:71063997 original size:18 final size:18
Alignment explanation
Indices: 71063932--71063991 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
71063922 TGTTACAAAT
71063932 ATTTAAAATAA-ATA-ATA
1 ATTTAAAATAATATAGA-A
*
71063949 TTTTATAAATAA-A-AGAA
1 ATTTA-AAATAATATAGAA
71063966 ATTTAAAATAATATAGAA
1 ATTTAAAATAATATAGAA
71063984 ATTTAAAA
1 ATTTAAAA
71063992 CTATATTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
16 6 0.16
17 11 0.30
18 20 0.54
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATTTAAAATAATATAGAA
Found at i:71065545 original size:129 final size:129
Alignment explanation
Indices: 71065315--71065572 Score: 516
Period size: 129 Copynumber: 2.0 Consensus size: 129
71065305 AAAAAAATCT
71065315 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
1 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
71065380 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
66 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
71065444 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
1 TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
71065509 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
66 TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
71065573 ATCTCCATTC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 129 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (129 bp):
TGGATCAAAATAGCTTGCTTGCAAATTCATCAGTGGGAGCTCCTATACGAGAATAGCTGGACTTT
TTTGAAACATCTCTCAGTTCTGATCATTCTCCATTTTCTCTTTTCTAAACATCACTTTCTTCCC
Found at i:71065898 original size:19 final size:20
Alignment explanation
Indices: 71065853--71065900 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
71065843 TAGATCATAT
71065853 ATATTTTTATCATTTTTAATA
1 ATATTTTTAT-ATTTTTAATA
71065874 AT-TTTTTAT-TTTTTAA-A
1 ATATTTTTATATTTTTAATA
71065891 ATTATTTTTA
1 A-TATTTTTA
71065901 GTAATTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.08
18 8 0.32
19 6 0.24
20 7 0.28
21 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATATTTTTATATTTTTAATA
Found at i:71066738 original size:39 final size:39
Alignment explanation
Indices: 71066683--71066761 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
71066673 AAGGTGGAAG
* *
71066683 TCAACTTTCTCTCTACACTCAGGAAAATCAAAATTCAAC
1 TCAACTTTCTCCCTACAATCAGGAAAATCAAAATTCAAC
*
71066722 TCAACTTTCTCCCTACAATCGGGAAAATCAAAATTCAAC
1 TCAACTTTCTCCCTACAATCAGGAAAATCAAAATTCAAC
71066761 T
1 T
71066762 TTTAATTTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.28, G:0.06, T:0.28
Consensus pattern (39 bp):
TCAACTTTCTCCCTACAATCAGGAAAATCAAAATTCAAC
Found at i:71067689 original size:14 final size:15
Alignment explanation
Indices: 71067670--71067700 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
71067660 ATTACTTTTC
71067670 AAAAGTG-TTTTGAA
1 AAAAGTGATTTTGAA
71067684 AAAAGTGATTTTGAA
1 AAAAGTGATTTTGAA
71067699 AA
1 AA
71067701 GTACTTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (15 bp):
AAAAGTGATTTTGAA
Found at i:71067714 original size:13 final size:13
Alignment explanation
Indices: 71067651--71067715 Score: 62
Period size: 13 Copynumber: 4.9 Consensus size: 13
71067641 TTTAGTATTG
*
71067651 CTTTTGAAAATTA
1 CTTTTGAAAAGTA
*
71067664 CTTTTCAAAAGT-
1 CTTTTGAAAAGTA
*
71067676 GTTTTGAAAAAAGTGA
1 CTTTTG--AAAAGT-A
71067692 -TTTTGAAAAGTA
1 CTTTTGAAAAGTA
71067704 CTTTTGAAAAGT
1 CTTTTGAAAAGT
71067716 TTGTTTTAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 5 0.12
13 27 0.63
14 6 0.14
15 5 0.12
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:71069778 original size:40 final size:40
Alignment explanation
Indices: 71069714--71069792 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
71069704 ATACGATACC
* * *
71069714 ACTTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCAT
1 ACTTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCAT
*
71069754 ACTTGGTGTGTAAGGCTGGGTGGGTCGATTTTATCCCCA
1 ACTTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCA
71069793 CATGGTGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (40 bp):
ACTTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCAT
Found at i:71077051 original size:40 final size:40
Alignment explanation
Indices: 71076991--71077066 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
71076981 ATGTGGTACC
* *
71076991 ACTTGGTGTGTAGGGTTGGGTGGGTTGATTTTATCCACAT
1 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCACAT
71077031 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCC
1 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCC
71077067 CCACATGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.12, G:0.37, T:0.38
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCACAT
Found at i:71085124 original size:27 final size:28
Alignment explanation
Indices: 71085087--71085226 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
71085077 AGCATGGCTG
* *
71085087 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
71085113 CCAGATACAGATA-ATTGTGGCAGAGCGA
1 CCAGATACAGATATA-TGTGGCAGAGCCA
71085141 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
71085168 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* * *
71085195 CCAGAT-TAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
71085222 CCAGA
1 CCAGA
71085227 ACGCTTCCTC
Statistics
Matches: 103, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 16 0.16
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:71085146 original size:54 final size:54
Alignment explanation
Indices: 71085087--71085226 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
71085077 AGCATGGCTG
* *
71085087 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
* *
71085141 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
** * * *
71085195 CCAGATTAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGA
71085227 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
Found at i:71089154 original size:27 final size:28
Alignment explanation
Indices: 71089117--71089256 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
71089107 AGCATGGCTG
* *
71089117 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
71089143 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
71089171 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
71089198 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
71089225 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
71089252 CCAGA
1 CCAGA
71089257 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:71090914 original size:26 final size:26
Alignment explanation
Indices: 71090876--71090933 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
71090866 CATGAAATTC
71090876 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
71090902 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
71090928 TTATCA
1 TTATCA
71090934 ATTTGTACCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:71092369 original size:46 final size:46
Alignment explanation
Indices: 71092276--71092482 Score: 172
Period size: 46 Copynumber: 4.5 Consensus size: 46
71092266 GTGCAGTTGC
* * * *
71092276 CATGTCCAAGACATGGTCTTACACT-G-ACACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCAATG
* *
71092321 CATGTCCTAGACATGTCTTACATTGGCT-TACATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCAATG
* * * * * * *
71092367 CATGTCGCAGAAATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
* * *
71092413 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCAATG
*
71092461 CATATCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
71092483 TTAGCACACA
Statistics
Matches: 129, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
44 9 0.07
45 15 0.12
46 56 0.43
47 26 0.20
48 22 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
Found at i:71092461 original size:94 final size:92
Alignment explanation
Indices: 71092215--71092492 Score: 255
Period size: 94 Copynumber: 3.0 Consensus size: 92
71092205 CTTAGGGTAT
* * * *
71092215 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATGTGTGCAGTTGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCA-ATG-CATG
71092280 TCCAAGACATGGTCTTACACT-G-ACACATCTC
62 TCC-AGACAT-GTCTTACACTAGCACACATCTC
* * * * *
71092311 -GTAGCCGATG-CATGTCCTAGACAT-GTCTTACATTGGCT-TACAT-CTCGAGGCCAATGCATG
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGG-CAATGCATG
* * * *
71092371 TCGCAGAAATGTCTTACACTAGCTCTCGTCTC
62 TC-CAGACATGTCTTACACTAGCACACATCTC
*
71092403 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAATGCATATCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC-AATGCATGT-C
*
71092468 CAGACATGTCTTACATTAGCACACA
64 CAGACATGTCTTACACTAGCACACA
71092493 AATAACCTAA
Statistics
Matches: 144, Mismatches: 24, Indels: 30
0.73 0.12 0.15
Matches are distributed among these distances:
90 10 0.07
91 12 0.08
92 18 0.12
93 20 0.14
94 61 0.42
95 17 0.12
96 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (92 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCAATGCATGTCCA
GACATGTCTTACACTAGCACACATCTC
Found at i:71107125 original size:49 final size:49
Alignment explanation
Indices: 71107053--71107148 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
71107043 GAGGTAGCGA
*
71107053 ATTTTCTTGGTTTTTAGCGATCTCCTCCGTTGTGGTTGAAGTATCGTGG
1 ATTTTCTTGGTTTTTAGCCATCTCCTCCGTTGTGGTTGAAGTATCGTGG
* *
71107102 ATTTTCTTTGTTTTTAGCCATCTCCTCGGTTGTGGTTGAAGTATCGT
1 ATTTTCTTGGTTTTTAGCCATCTCCTCCGTTGTGGTTGAAGTATCGT
71107149 CCTCTAGCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.12, C:0.17, G:0.24, T:0.47
Consensus pattern (49 bp):
ATTTTCTTGGTTTTTAGCCATCTCCTCCGTTGTGGTTGAAGTATCGTGG
Found at i:71109534 original size:48 final size:48
Alignment explanation
Indices: 71109256--71109536 Score: 215
Period size: 48 Copynumber: 5.9 Consensus size: 48
71109246 CATAGGGTAT
*
71109256 AATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATC
1 AATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATCTC
** * * * * *
71109306 CGTGCTGATGTCATGTCCCAGACATGGTCTTACACTAG--CACATCTAT
1 AATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-C
** * * * *
71109353 ACATGTCGATGCCATGTCCTAGACATGGTCTTACAAT-G-ACACATCTC
1 A-ATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* *
71109400 -ATAGCCGATG-CATGTCCTAGACAT-GTCTTACA-TTGC-CTTACATCTC
1 AATA-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CATCTC
* ** * * *
71109446 GAGGCCTAT-ACATGTCCCAGACAT-GTCTTACACTATCTCTCATCTC
1 AATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
*
71109492 AATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 AATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
71109537 AATGTGGTCG
Statistics
Matches: 185, Mismatches: 32, Indels: 30
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.05
45 16 0.09
46 51 0.28
47 19 0.10
48 55 0.30
50 33 0.18
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (48 bp):
AATACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
Found at i:71109549 original size:48 final size:46
Alignment explanation
Indices: 71109260--71109576 Score: 194
Period size: 46 Copynumber: 6.8 Consensus size: 46
71109250 GGGTATAATA
*
71109260 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT--G-G
* * *
71109310 CTGATGTCATGTCCCAGACATGGTCTTACACTAGCACATCTATACAT-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TC-ATA-ATGG
* * * *
71109358 TCGATGCCATGTCCTAGACATGGTCTTACAATGACACATCTCAT-A--G
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-A-GC-TCTCATAATGG
* * *
71109404 CCGATG-CATGTCCTAGACAT-GTCTTACA-TTGC-CTTACAT-CTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CATAAT---GG
* * * *
71109450 CCTAT-ACATGTCCCAGACAT-GTCTTACACTATCTCTCATCTCAAT-A
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--T-AATGG
*
71109496 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAA--TGG
* *
71109544 TCGATG-CATGTCCCAGAAAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
71109577 ACACAAATAA
Statistics
Matches: 213, Mismatches: 30, Indels: 52
0.72 0.10 0.18
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 4 0.02
43 1 0.00
44 8 0.04
45 16 0.08
46 51 0.24
47 32 0.15
48 51 0.24
49 3 0.01
50 38 0.18
51 3 0.01
52 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGG
Found at i:71109555 original size:94 final size:94
Alignment explanation
Indices: 71109261--71109574 Score: 265
Period size: 94 Copynumber: 3.3 Consensus size: 94
71109251 GGTATAATAC
* * * *
71109261 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCTGATGTCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA--TCTCACATCT-CATACCGATG-CATGTCCCA
* *
71109326 GACATGGTCTTACACTAGCACATCTATACA--T-GT
62 GACATGGTCTTACACTGGCTC-TC-ATA-ATGTGGT
* ** *
71109359 CGATGCCATGTCCTAGACATGGTCTTACA--ATGACACATCTCATAGCCGATGCATGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTATCTCACATCTCATA-CCGATGCATGTCCCAGAC
* * * * *
71109422 AT-GTCTTACATTGCCT-TACAT-CTCGAGGC
65 ATGGTCTTACACTGGCTCT-CATAAT-GTGGT
* * *
71109451 CTAT-ACATGTCCCAGACAT-GTCTTACACTATCTCTCATCTCAATACCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTATCTCACATCTC-ATACCGATG-CATGTCCCAGA
71109514 CATGGTCTTACACTGGCTCTCATAATGTGGT
64 CATGGTCTTACACTGGCTCTCATAATGTGGT
*
71109545 CGATG-CATGTCCCAGAAAT-GTCTTACACTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA
71109575 GCACACAAAT
Statistics
Matches: 173, Mismatches: 29, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
90 11 0.06
91 14 0.08
92 29 0.17
93 31 0.18
94 57 0.33
95 2 0.01
96 1 0.01
98 28 0.16
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTATCTCACATCTCATACCGATGCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATAATGTGGT
Found at i:71118992 original size:19 final size:19
Alignment explanation
Indices: 71118948--71118994 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
71118938 AATTCACACA
*
71118948 AGTAAGCTTATTGAAGCTT
1 AGTAAGTTTATTGAAGCTT
71118967 AGTAAGTTTATTGAAGCTT
1 AGTAAGTTTATTGAAGCTT
71118986 AGTAAGTTT
1 AGTAAGTTT
71118995 GAGGAACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (19 bp):
AGTAAGTTTATTGAAGCTT
Found at i:71119268 original size:10 final size:10
Alignment explanation
Indices: 71119253--71119277 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
71119243 CTTATAAGAT
71119253 AACTTCTAAA
1 AACTTCTAAA
71119263 AACTTCTAAA
1 AACTTCTAAA
71119273 AACTT
1 AACTT
71119278 AGAAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (10 bp):
AACTTCTAAA
Found at i:71119639 original size:11 final size:11
Alignment explanation
Indices: 71119623--71119654 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
71119613 GCATACTAAC
71119623 TTCAAATCAAT
1 TTCAAATCAAT
71119634 TTCAAATCAAT
1 TTCAAATCAAT
71119645 TTCAACATCA
1 TTCAA-ATCA
71119655 GGGGACACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (11 bp):
TTCAAATCAAT
Found at i:71122041 original size:37 final size:37
Alignment explanation
Indices: 71121979--71122092 Score: 147
Period size: 37 Copynumber: 3.1 Consensus size: 37
71121969 AACCAATTGA
* * * * *
71121979 AACACACCAATCGCTCATAAAAGCTAATCCATCCGAT
1 AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
* *
71122016 AACACGTCAAACGCTTATAAGAGCTAATCCAACGGAT
1 AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
* *
71122053 AACACGCCAAACACTTATAAGAGCTAATCCAACTGAT
1 AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
71122090 AAC
1 AAC
71122093 TTGCCAGATC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.42, C:0.28, G:0.11, T:0.18
Consensus pattern (37 bp):
AACACGCCAAACGCTTATAAGAGCTAATCCAACCGAT
Found at i:71127111 original size:21 final size:21
Alignment explanation
Indices: 71127085--71127130 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
71127075 AACATGGCCG
71127085 TGTGGCTAAC-CCACACGCCCA
1 TGTGGCT-ACTCCACACGCCCA
*
71127106 TGTGGCTACTCCACACGCCCG
1 TGTGGCTACTCCACACGCCCA
71127127 TGTG
1 TGTG
71127131 TAGTCCCATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.17, C:0.39, G:0.24, T:0.20
Consensus pattern (21 bp):
TGTGGCTACTCCACACGCCCA
Found at i:71127960 original size:5 final size:5
Alignment explanation
Indices: 71127950--71127980 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
71127940 TGAAACATTG
71127950 CATAA CATAA CATAA CATAA CATAA CATAA C
1 CATAA CATAA CATAA CATAA CATAA CATAA C
71127981 CAATTCTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (5 bp):
CATAA
Found at i:71139564 original size:57 final size:57
Alignment explanation
Indices: 71139470--71139589 Score: 195
Period size: 57 Copynumber: 2.1 Consensus size: 57
71139460 AATATCGTCG
* ** *
71139470 ATAATTATGAAAACAAATATATCTTAATATGTTTGAAATATCCTATTCATTAAGTTC
1 ATAAATATGAAAACAAATATATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
*
71139527 ATAAATATGAAAACAAATCTATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
1 ATAAATATGAAAACAAATATATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
71139584 ATAAAT
1 ATAAAT
71139590 GCAGTCAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.37
Consensus pattern (57 bp):
ATAAATATGAAAACAAATATATCTTAATATGGCTGAAATATCCTATTCATTAAGTCC
Found at i:71142642 original size:43 final size:43
Alignment explanation
Indices: 71142589--71142674 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
71142579 ATGCAATTTC
* * * *
71142589 TATACACTTTGGGAGTGGCTCCCCTAGCTTTGGTAATCACTTT
1 TATACACTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
*
71142632 TATACTCTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
1 TATACACTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
71142675 ATAGCATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (43 bp):
TATACACTTTGGAAATAGCTCCCCTAGCTTTGGCAATCACTTT
Found at i:71142941 original size:38 final size:39
Alignment explanation
Indices: 71142889--71142980 Score: 114
Period size: 38 Copynumber: 2.4 Consensus size: 39
71142879 CGTTTGAATG
*
71142889 AAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
** * *
71142928 AAAAACGCC-CTAAAGATTGAGTATTAGCGGCGCTTTTT
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
*
71142966 AGAAAACGCCGCTAA
1 A-AAAACGCCACTAA
71142981 TTCTTGATCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 26 0.57
39 16 0.35
40 4 0.09
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (39 bp):
AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTC
Found at i:71143103 original size:90 final size:92
Alignment explanation
Indices: 71142993--71143171 Score: 344
Period size: 90 Copynumber: 2.0 Consensus size: 92
71142983 CTTGATCTTT
71142993 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGC-TTTTTAAAAA
1 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAAAA
71143057 -ACCGCTAAAGATCAAGTATTAGCAAA
66 CACCGCTAAAGATCAAGTATTAGCAAA
71143083 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAAAA
1 AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAAAA
71143148 CACCGCTAAAGATCAAGTATTAGC
66 CACCGCTAAAGATCAAGTATTAGC
71143172 GGCGTTTTTA
Statistics
Matches: 87, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
90 54 0.62
91 10 0.11
92 23 0.26
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (92 bp):
AACGCCGCAAAAAATTAACACAACATATTGAGCCTTTAGTGGCTTTAGCGGCGCTTTTTTAAAAA
CACCGCTAAAGATCAAGTATTAGCAAA
Found at i:71143220 original size:40 final size:39
Alignment explanation
Indices: 71143125--71143266 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 39
71143115 CCTTTAGTGG
* *
71143125 CTTTAGCGGCGCTTTTTTAAAAACA-CCGCTAAAG-ATCAA
1 CTTTAGCGGCGC-TTTTTAAAAAAAGCCGCTAATGTA-CAA
* *
71143164 GTATTAGCGGCG-TTTTTAAAAAAAGCCGCTATATGTACAC
1 CT-TTAGCGGCGCTTTTTAAAAAAAGCCGCTA-ATGTACAA
* * * *
71143204 CTTTAGCGGCGCTTTTTAGAAGACGCCGCTAATGCTTA-AT
1 CTTTAGCGGCGCTTTTTAAAAAAAGCCGCTAATG--TACAA
*
71143244 CTTTAGCGGCGTTTTTTAAAAAA
1 CTTTAGCGGCGCTTTTTAAAAAA
71143267 GCCACAAAAA
Statistics
Matches: 84, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
38 11 0.13
39 19 0.23
40 51 0.61
41 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (39 bp):
CTTTAGCGGCGCTTTTTAAAAAAAGCCGCTAATGTACAA
Found at i:71143467 original size:21 final size:21
Alignment explanation
Indices: 71143421--71143573 Score: 69
Period size: 22 Copynumber: 7.1 Consensus size: 21
71143411 TTAATTATCA
* *
71143421 TTATCGTTTAGGGTTTATGGT
1 TTATGGTTAAGGGTTTATGGT
*
71143442 ATATGGTTAAGGGTTTAAT-GT
1 TTATGGTTAAGGGTTT-ATGGT
**** *
71143463 TTATGAGTTACTATTTTAAGGT
1 TTATG-GTTAAGGGTTTATGGT
* * *
71143485 TTATGGATTATGGGTTTAGGGA
1 TTATGG-TTAAGGGTTTATGGT
* * *
71143507 TTATGGTTTATGGATTATGGGT
1 TTATGGTTAAGGGTTTAT-GGT
* *
71143529 TTAGGGATT-ATGGTTTATGGT
1 TTATGG-TTAAGGGTTTATGGT
* *
71143550 TTATGGGTTAATGG-TTAGGGT
1 TTAT-GGTTAAGGGTTTATGGT
71143571 TTA
1 TTA
71143574 AGTTTTAGAG
Statistics
Matches: 99, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
21 45 0.45
22 52 0.53
23 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGGT
Found at i:71143502 original size:15 final size:15
Alignment explanation
Indices: 71143482--71143573 Score: 120
Period size: 15 Copynumber: 6.4 Consensus size: 15
71143472 ACTATTTTAA
71143482 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
71143497 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
71143511 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
71143526 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
71143540 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
*
71143555 GGTTAATGG-TTA-G
1 GGTTTATGGATTATG
71143568 GGTTTA
1 GGTTTA
71143574 AGTTTTAGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
13 6 0.09
14 28 0.41
15 34 0.50
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:71143502 original size:22 final size:21
Alignment explanation
Indices: 71143477--71143573 Score: 97
Period size: 22 Copynumber: 4.5 Consensus size: 21
71143467 GAGTTACTAT
*
71143477 TTTAAGGTTTATGGATTATGGG
1 TTTAGGGTTTATGGATTAT-GG
* *
71143499 TTTAGGGATTATGGTTTATGG
1 TTTAGGGTTTATGGATTATGG
* *
71143520 ATTATGGGTTTAGGGATTATGG
1 TTTA-GGGTTTATGGATTATGG
* *
71143542 TTTATGGTTTATGGGTTAATGG
1 TTTAGGGTTTATGGATT-ATGG
71143564 -TTAGGGTTTA
1 TTTAGGGTTTA
71143574 AGTTTTAGAG
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
21 24 0.39
22 37 0.61
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (21 bp):
TTTAGGGTTTATGGATTATGG
Found at i:71143514 original size:29 final size:29
Alignment explanation
Indices: 71143482--71143558 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
71143472 ACTATTTTAA
71143482 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTATGGGTTTAGGGATTAT
71143511 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTATGGGTTTAGGGATTAT
*
71143540 GGTTTATGGTTTATGGGTT
1 GGTTTATGGATTATGGGTT
71143559 AATGGTTAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (29 bp):
GGTTTATGGATTATGGGTTTAGGGATTAT
Found at i:71143621 original size:29 final size:29
Alignment explanation
Indices: 71143477--71143622 Score: 118
Period size: 29 Copynumber: 5.1 Consensus size: 29
71143467 GAGTTACTAT
*
71143477 TTTAAGGTTTATGGATTATGGGTTTAGGG
1 TTTAAGGTTTATGGATTATGGGTTAAGGG
* * *
71143506 ATTATGGTTTATGGATTATGGGTTTAGGG
1 TTTAAGGTTTATGGATTATGGGTTAAGGG
* * * *
71143535 ATTATGGTTTATGGTTTATGGGTTAATGG
1 TTTAAGGTTTATGGATTATGGGTTAAGGG
* * ** * *
71143564 -TTAGGGTTTAAGTTTTAGAGGGTT-GGGG
1 TTTAAGGTTTATGGATTA-TGGGTTAAGGG
*
71143592 TTTAAGGTTTAT-GAGTTAAGGGTTAAGGG
1 TTTAAGGTTTATGGA-TTATGGGTTAAGGG
71143621 TT
1 TT
71143623 AAGTGTTAAG
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
28 22 0.23
29 75 0.77
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (29 bp):
TTTAAGGTTTATGGATTATGGGTTAAGGG
Found at i:71143652 original size:50 final size:50
Alignment explanation
Indices: 71143531--71143683 Score: 132
Period size: 50 Copynumber: 3.0 Consensus size: 50
71143521 TTATGGGTTT
* * *
71143531 AGGGATTATGGTTTATGGTTTATGGGTTAATGGTTAGGGTTTAAGTTTTAG
1 AGGG-TTATGGTTTATGGTTTATGAGTTAAGGGTTAGGGTTTAAGTGTTAG
** *
71143582 AGGGTTGGGGTTTAAGGTTTATGAGTTAAGGGTTAAGGG-TTAAGTGTTA-
1 AGGGTTATGGTTTATGGTTTATGAGTTAAGGGTT-AGGGTTTAAGTGTTAG
* * * * * * *
71143631 AGGGTTTATGTTTTATTGTTTAAG-GTTTAGGGGTTAGGGGTTAGGGGTTAG
1 AGGG-TTATGGTTTATGGTTTATGAG-TTAAGGGTTAGGGTTTAAGTGTTAG
71143682 AG
1 AG
71143684 ATTTAGGGTT
Statistics
Matches: 82, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
49 9 0.11
50 63 0.77
51 10 0.12
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (50 bp):
AGGGTTATGGTTTATGGTTTATGAGTTAAGGGTTAGGGTTTAAGTGTTAG
Found at i:71143695 original size:7 final size:7
Alignment explanation
Indices: 71143477--71143696 Score: 91
Period size: 7 Copynumber: 30.7 Consensus size: 7
71143467 GAGTTACTAT
*
71143477 TTTAAGG
1 TTTAGGG
*
71143484 TTTATGG
1 TTTAGGG
*
71143491 ATTATGGG
1 TTTA-GGG
71143499 TTTAGGG
1 TTTAGGG
* *
71143506 ATTATGG
1 TTTAGGG
*
71143513 TTTATGG
1 TTTAGGG
*
71143520 ATTATGGG
1 TTTA-GGG
71143528 TTTAGGG
1 TTTAGGG
* *
71143535 ATTATGG
1 TTTAGGG
*
71143542 TTTATGG
1 TTTAGGG
71143549 TTTATGGG
1 TTTA-GGG
* *
71143557 TTAATGG
1 TTTAGGG
71143564 -TTAGGG
1 TTTAGGG
* *
71143570 TTTAAGT
1 TTTAGGG
71143577 TTTAGAGG
1 TTTAG-GG
* *
71143585 GTTGGGG
1 TTTAGGG
*
71143592 TTTAAGG
1 TTTAGGG
*
71143599 TTTATGAG
1 TTTA-GGG
*
71143607 TTAAGGG
1 TTTAGGG
*
71143614 TTAAGGG
1 TTTAGGG
* *
71143621 TTAAGTG
1 TTTAGGG
*
71143628 TTAAGGG
1 TTTAGGG
* *
71143635 TTTATGT
1 TTTAGGG
**
71143642 TTTATTG
1 TTTAGGG
*
71143649 TTTAAGG
1 TTTAGGG
71143656 TTTAGGG
1 TTTAGGG
*
71143663 GTTAGGG
1 TTTAGGG
*
71143670 GTTAGGG
1 TTTAGGG
* *
71143677 GTTAGAGA
1 TTTAG-GG
71143685 TTTAGGG
1 TTTAGGG
71143692 TTTAG
1 TTTAG
71143697 ATTAATTAGT
Statistics
Matches: 161, Mismatches: 45, Indels: 14
0.73 0.20 0.06
Matches are distributed among these distances:
6 4 0.02
7 129 0.80
8 28 0.17
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:71144358 original size:14 final size:13
Alignment explanation
Indices: 71144339--71144389 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
71144329 TGACTTTTTT
71144339 ATTTATAAAAACTA
1 ATTTATAAAAA-TA
71144353 ATTTATAAAAAATA
1 ATTTAT-AAAAATA
*
71144367 A-TAATAATAAATA
1 ATTTATAA-AAATA
*
71144380 TTTTATAAAA
1 ATTTATAAAA
71144390 TTATTTAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.06
13 10 0.32
14 14 0.45
15 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTATAAAAATA
Found at i:71146646 original size:14 final size:14
Alignment explanation
Indices: 71146627--71146655 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
71146617 CATGTGAATG
71146627 TATAAATATAAATA
1 TATAAATATAAATA
71146641 TATAAATATAAATA
1 TATAAATATAAATA
71146655 T
1 T
71146656 TTGCATGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TATAAATATAAATA
Found at i:71148427 original size:75 final size:75
Alignment explanation
Indices: 71148337--71148562 Score: 416
Period size: 75 Copynumber: 3.0 Consensus size: 75
71148327 TGCTTCCTTG
71148337 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
1 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
71148402 TACTATTCTT
66 TACTATTCTT
71148412 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
1 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
71148477 TACTATTCTT
66 TACTATTCTT
* * * *
71148487 TACTCATTCTCATCCTCTTTATATTTTCCTATGCTTTCTTCAAGTAGGATGCTAAGAATTTCCTG
1 TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
71148552 TACTATTCTT
66 TACTATTCTT
71148562 T
1 T
71148563 CTGATTGCTT
Statistics
Matches: 147, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 147 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (75 bp):
TACTCATTCTCATCCTCTTTATATTTTCCAATGCTTTCTTCAAGTAGGATACTAAGAATCTCCTA
TACTATTCTT
Found at i:71148967 original size:76 final size:74
Alignment explanation
Indices: 71148871--71149018 Score: 199
Period size: 76 Copynumber: 2.0 Consensus size: 74
71148861 ATAGTGGTAT
*
71148871 TTTTAGAAAAAGTGCCGCTAAAAGCCATGGCCTTTAGCAAAGTTTGCTAAAAA-GCGCCACTAAA
1 TTTTAGAAAAAGTGCCGCTAAAAGCCATGGCCTTTAGCAAAGTTTGCGAAAAAGGCGCCACT-AA
71148935 AGGTCATGGC
65 AGGTCATGGC
* * * * * *
71148945 TTTTACGAAAAATGTGCCGCTAAAGGTCATGGCTTTTAGCGACGTTTGCGAAAAAGGCGCCGCTA
1 TTTTA-GAAAAA-GTGCCGCTAAAAGCCATGGCCTTTAGCAAAGTTTGCGAAAAAGGCGCCACTA
71149010 AAGGTCATG
64 AAGGTCATG
71149019 ATCTTTAGCG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
74 5 0.08
75 6 0.09
76 46 0.72
77 7 0.11
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (74 bp):
TTTTAGAAAAAGTGCCGCTAAAAGCCATGGCCTTTAGCAAAGTTTGCGAAAAAGGCGCCACTAAA
GGTCATGGC
Found at i:71155926 original size:19 final size:19
Alignment explanation
Indices: 71155902--71155944 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
71155892 TAGTTATTTG
71155902 TTTTTTAATTTAATTTAAT
1 TTTTTTAATTTAATTTAAT
** *
71155921 TTTTTTTGTTTTATTTAAT
1 TTTTTTAATTTAATTTAAT
71155940 TTTTT
1 TTTTT
71155945 ACATAATCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTAATTTAATTTAAT
Found at i:71157465 original size:19 final size:18
Alignment explanation
Indices: 71157425--71157464 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
71157415 ATTTTGGGAC
*
71157425 TTTTATAAATATTTTGAA
1 TTTTAAAAATATTTTGAA
71157443 TTTTAAAAATAATTTTG-A
1 TTTTAAAAAT-ATTTTGAA
71157461 TTTT
1 TTTT
71157465 TTTTTGTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAAAAATATTTTGAA
Found at i:71162941 original size:26 final size:26
Alignment explanation
Indices: 71162911--71163018 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
71162901 TGAAATTCCC
*
71162911 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
71162937 ATCATGAAACATTTACCTAACCCTTT
1 ATCATGAAACATTTACCTAACCCATT
*
71162963 ATCATGAAACATTTACCTAACTCATT
1 ATCATGAAACATTTACCTAACCCATT
71162989 ATCAT-AGAACATTTACCTAACCCATT
1 ATCATGA-AACATTTACCTAACCCATT
71163015 ATCA
1 ATCA
71163019 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 1 0.01
26 75 0.99
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:71164242 original size:45 final size:45
Alignment explanation
Indices: 71164181--71164271 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
71164171 AAACTATGTG
71164181 ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
1 ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
* * * *
71164226 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
71164271 A
1 A
71164272 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (45 bp):
ATCTAAACTCAATGAGTTGTGGTCCGAGTTCATGATATATGTGAC
Found at i:71167366 original size:19 final size:19
Alignment explanation
Indices: 71167338--71167374 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
71167328 TAAATATGAT
71167338 GGTCTTAAATG-GTAATTA
1 GGTCTTAAATGTGTAATTA
71167356 GGTCATTAAATGTGTAATT
1 GGTC-TTAAATGTGTAATT
71167375 GGATATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (19 bp):
GGTCTTAAATGTGTAATTA
Found at i:71170042 original size:40 final size:40
Alignment explanation
Indices: 71169963--71170084 Score: 147
Period size: 40 Copynumber: 3.0 Consensus size: 40
71169953 CGGATGATAA
* * ** *
71169963 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
71170003 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
71170043 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
71170083 CC
1 CC
71170085 AGCTAAATCC
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 64 0.94
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:71170367 original size:22 final size:22
Alignment explanation
Indices: 71170327--71170368 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
71170317 GAATGTGCAT
*
71170327 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
71170349 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
71170369 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:71172219 original size:35 final size:35
Alignment explanation
Indices: 71172171--71172238 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
71172161 CGGGCGTATG
*
71172171 TACTAGCCATGTGAGGCACACGGCCTGTTCACATC
1 TACTAGCCATGTGAGGCACACAGCCTGTTCACATC
* *
71172206 TACTAGCCGTGTGAGGGACACAGCCTGTTCACA
1 TACTAGCCATGTGAGGCACACAGCCTGTTCACA
71172239 CTGGCATGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (35 bp):
TACTAGCCATGTGAGGCACACAGCCTGTTCACATC
Found at i:71176641 original size:22 final size:20
Alignment explanation
Indices: 71176594--71176642 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
71176584 ATGAATAAAA
* *
71176594 GAAAAAATATATATAATTTT
1 GAAAATATATATATAATTAT
*
71176614 GTAAATATATATATATATATAT
1 GAAAATATATATATA-AT-TAT
71176636 GAAAATA
1 GAAAATA
71176643 ATTTGATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 13 0.57
21 2 0.09
22 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (20 bp):
GAAAATATATATATAATTAT
Done.