Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 221 of 310
Found at i:72574367 original size:101 final size:101
Alignment explanation
Indices: 72574235--72574498 Score: 377
Period size: 101 Copynumber: 2.6 Consensus size: 101
72574225 GGTTTTCGGC
** *
72574235 CACGTGTGTAGTACTAAGTTTAGGCTTCTACGTGTACCAAATCGTTAGGTCACATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATCGTTAGGTCACATGTGTAGTACT
*
72574300 AAGTGCAGGCTACTATGCGAACCAGATAGCTTCGAT
66 AAGTGCAGGCTACTATGCGAACCAGATAGCTTCAAT
* * * * *
72574336 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATCGTTAGGTCACATGTGTAGTACT
* *
72574401 AAGTGCAGGCTACTATGCGTACCTGATAGCTTCAAT
66 AAGTGCAGGCTACTATGCGAACCAGATAGCTTCAAT
* * * *
72574437 CACGTGTGTAGTACTAAGTACATGCTACTACGTGTATTC-AATGGTTAGGTCACGTGTGTAGT
1 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTA-CCAAATCGTTAGGTCACATGTGTAGT
72574499 GTAACACCCC
Statistics
Matches: 144, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
101 144 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATCGTTAGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGAACCAGATAGCTTCAAT
Found at i:72589246 original size:46 final size:46
Alignment explanation
Indices: 72589194--72589364 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
72589184 GTTGAGCATT
72589194 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
* * * *
72589240 CAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--C
* * * *
72589287 CGAACTTGTTGAGTTTAGTCCGAGTTCATTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
* *
72589333 CGAGCTCGTTGAGTTGAGTCCGAGTTTACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72589365 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 54 0.54
47 25 0.25
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
Found at i:72589353 original size:93 final size:93
Alignment explanation
Indices: 72589189--72589358 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
72589179 GGATGGTTGA
* *
72589189 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
72589254 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
72589282 GCATCCGAACTTGTTGAGTTTAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
72589347 TGAGTCCGAGTT
66 TGAGTCCGAGTT
72589359 TACTTAGGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72589624 original size:19 final size:20
Alignment explanation
Indices: 72589589--72589626 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72589579 ATAAGGTGGT
72589589 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
72589609 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
72589627 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:72593231 original size:57 final size:57
Alignment explanation
Indices: 72593170--72593283 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
72593160 AGGGAAATAG
*
72593170 TAACACATGTTTTCAAAGATGAACGAATTCACTTCAACTAATTTTTTGGCCATATAT
1 TAACACATGTTTTCAAAGATGAACGAATTCACTTCAACTAATGTTTTGGCCATATAT
72593227 TAACACATGTTTTCAAAGATGAACGAATTCACTTCAACTAATGTTTTGGCCATATAT
1 TAACACATGTTTTCAAAGATGAACGAATTCACTTCAACTAATGTTTTGGCCATATAT
72593284 ATGGCCTATG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (57 bp):
TAACACATGTTTTCAAAGATGAACGAATTCACTTCAACTAATGTTTTGGCCATATAT
Found at i:72593544 original size:16 final size:16
Alignment explanation
Indices: 72593503--72593548 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
72593493 GGTAAGTTTT
72593503 CTTTAGATT-TG-AAA
1 CTTTAGATTGTGAAAA
* * *
72593517 CTATAAACTGTGAAAA
1 CTTTAGATTGTGAAAA
72593533 CTTTAGATTGTGAAAA
1 CTTTAGATTGTGAAAA
72593549 TGATAGATAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 6 0.25
15 2 0.08
16 16 0.67
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (16 bp):
CTTTAGATTGTGAAAA
Found at i:72599244 original size:43 final size:43
Alignment explanation
Indices: 72599176--72599290 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
72599166 TTTGAGATAT
* * ** * *
72599176 GATTTCGTGTAAGACCACGCCTGGGACATTAGCATCGACTT-GA
1 GATTACGTGTAAGACCATGTTTGGGACATTAGAATCGA-TTAAA
* *
72599219 GA-TATCGTGTAAGACCGTGTTTGGGACATTGGAATCGATTAAA
1 GATTA-CGTGTAAGACCATGTTTGGGACATTAGAATCGATTAAA
72599262 GATTACGTGTAAGACCATGTTTGGGACAT
1 GATTACGTGTAAGACCATGTTTGGGACAT
72599291 CATCATCGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 3 0.05
43 55 0.92
44 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTTTGGGACATTAGAATCGATTAAA
Found at i:72599340 original size:42 final size:42
Alignment explanation
Indices: 72599294--72599380 Score: 95
Period size: 42 Copynumber: 2.1 Consensus size: 42
72599284 GGGACATCAT
* * **
72599294 CATCG-TATTTAATTTCATGTAAGACCTTGTCAGGGACAGTGG
1 CATCGATA-TTAATTACATATAAGACCACGTCAGGGACAGTGG
* * *
72599336 CATCGATATTGATTACATATAAGACCACGTCTGGGACATTGG
1 CATCGATATTAATTACATATAAGACCACGTCAGGGACAGTGG
72599378 CAT
1 CAT
72599381 TGTACAAGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
42 35 0.95
43 2 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (42 bp):
CATCGATATTAATTACATATAAGACCACGTCAGGGACAGTGG
Found at i:72605538 original size:93 final size:93
Alignment explanation
Indices: 72605426--72605598 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
72605416 CGCCCATAAG
* * *
72605426 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCA
*
72605491 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* *
72605519 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCA
*
72605584 ACGAGTTCAGATGCC
66 ACGAGCTCAGATGCC
72605599 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:72605591 original size:46 final size:46
Alignment explanation
Indices: 72605427--72605588 Score: 191
Period size: 46 Copynumber: 3.5 Consensus size: 46
72605417 GCCCATAAGC
* ** *
72605427 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* * * * ** *
72605473 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAAT
*
72605520 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
72605566 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
72605589 TTCAGATGCC
Statistics
Matches: 94, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 59 0.63
47 35 0.37
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
Found at i:72605613 original size:46 final size:45
Alignment explanation
Indices: 72605472--72605613 Score: 126
Period size: 46 Copynumber: 3.1 Consensus size: 45
72605462 CATCCATAAG
* * *
72605472 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-A
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCCAA
* * * * *
72605519 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CAA
* *
72605565 TGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAAATATCCCAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCCAA
72605611 TGA
1 TGA
72605614 CATGTCACTT
Statistics
Matches: 75, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.05
46 37 0.49
47 30 0.40
48 4 0.05
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCCAA
Found at i:72614563 original size:23 final size:23
Alignment explanation
Indices: 72614506--72614777 Score: 501
Period size: 23 Copynumber: 11.7 Consensus size: 23
72614496 CCTAGCCTCT
72614506 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614528 TTTTTTAATAACTGGGGCATAAGCCC
1 ---TTTAATAACTGGGGCATAAGCCC
*
72614554 TTTAAAAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614577 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614600 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614623 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614646 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614669 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614692 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614715 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614738 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72614761 TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCAT
72614778 GCATATCATA
Statistics
Matches: 244, Mismatches: 2, Indels: 4
0.98 0.01 0.02
Matches are distributed among these distances:
23 222 0.91
25 16 0.07
26 6 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:72614802 original size:20 final size:20
Alignment explanation
Indices: 72614777--72614817 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72614767 AACTGGGGCA
72614777 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
72614797 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
72614817 T
1 T
72614818 TTATCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:72622470 original size:31 final size:31
Alignment explanation
Indices: 72622427--72622490 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72622417 CCTTTTCATA
72622427 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
72622458 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
72622489 TT
1 TT
72622491 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:72622730 original size:24 final size:24
Alignment explanation
Indices: 72622683--72622825 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
72622673 GCTTTATCAT
*
72622683 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
72622708 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
72622732 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
72622755 ATATCTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
72622779 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
72622803 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72622826 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
23 23 0.21
24 71 0.66
25 14 0.13
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72622763 original size:47 final size:49
Alignment explanation
Indices: 72622697--72622825 Score: 194
Period size: 47 Copynumber: 2.7 Consensus size: 49
72622687 CTGGAGGCCT
* *
72622697 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATATCTGGGGCATAAGCCCTTTTTAATAACTAGGGCATA
72622746 AGCCC-TTTAATATCTGGGGCATAAGCCC-TTTTAATAACTAGGGCATA
1 AGCCCTTTTAATATCTGGGGCATAAGCCCTTTTTAATAACTAGGGCATA
72622793 AGCCCTTTTAATAAT-TGGGGCATAAGCCCTTTT
1 AGCCCTTTTAAT-ATCTGGGGCATAAGCCCTTTT
72622826 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
47 38 0.51
48 27 0.36
49 9 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (49 bp):
AGCCCTTTTAATATCTGGGGCATAAGCCCTTTTTAATAACTAGGGCATA
Found at i:72622901 original size:20 final size:20
Alignment explanation
Indices: 72622878--72623120 Score: 396
Period size: 20 Copynumber: 12.2 Consensus size: 20
72622868 GAACATCTCG
72622878 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
72622898 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
72622918 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
72622938 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
72622958 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
72622978 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
72622998 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
72623018 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
72623038 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
72623058 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
72623078 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72623098 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72623118 TGT
1 TGT
72623121 TTATCAAAAT
Statistics
Matches: 203, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 203 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:72622924 original size:40 final size:40
Alignment explanation
Indices: 72622880--72623118 Score: 469
Period size: 40 Copynumber: 6.0 Consensus size: 40
72622870 ACATCTCGTG
72622880 TGCATATCATACATATCATGTGCATATCATACATGTCATC
1 TGCATATCATACATATCATGTGCATATCATACATGTCATC
72622920 TGCATATCATACATATCATGTGCATATCATACATGTCATC
1 TGCATATCATACATATCATGTGCATATCATACATGTCATC
72622960 TGCATATCATACATATCATGTGCATATCATACATGTCATC
1 TGCATATCATACATATCATGTGCATATCATACATGTCATC
72623000 TGCATATCATACATATCATGTGCATATCATACATGTCATC
1 TGCATATCATACATATCATGTGCATATCATACATGTCATC
72623040 TGCATATCATACATATCATGTGCATATCATACATGTCATC
1 TGCATATCATACATATCATGTGCATATCATACATGTCATC
*
72623080 TGCATATCATACATATCATGTGCATATCATACATATCAT
1 TGCATATCATACATATCATGTGCATATCATACATGTCAT
72623119 GTTTATCAAA
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 198 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (40 bp):
TGCATATCATACATATCATGTGCATATCATACATGTCATC
Found at i:72623440 original size:36 final size:36
Alignment explanation
Indices: 72623393--72623466 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
72623383 TAGCCTATAT
72623393 CAATAACAGTATTAACAGTCTTAACATGCAATTTAA
1 CAATAACAGTATTAACAGTCTTAACATGCAATTTAA
72623429 CAATAACAGTATTAACAGTCTTAACATGCAATTTAA
1 CAATAACAGTATTAACAGTCTTAACATGCAATTTAA
72623465 CA
1 CA
72623467 TATTTTCGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.30
Consensus pattern (36 bp):
CAATAACAGTATTAACAGTCTTAACATGCAATTTAA
Found at i:72631110 original size:8 final size:8
Alignment explanation
Indices: 72631092--72631122 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
72631082 TAAGTATTGG
72631092 TTTTA-TT
1 TTTTATTT
72631099 TTTTATTT
1 TTTTATTT
72631107 TTTTATTT
1 TTTTATTT
72631115 TTTTATTT
1 TTTTATTT
72631123 GGTTAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.22
8 18 0.78
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTATTT
Found at i:72634046 original size:26 final size:27
Alignment explanation
Indices: 72633989--72634053 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 27
72633979 AGTGAGCACT
**
72633989 ATCGGGAATATCACAAAGAGCCAATTA
1 ATCGGGAAGCTCACAAAGAGCCAATTA
* *
72634016 A-CGGGAAGCTCACGAAGAGCC-TTTA
1 ATCGGGAAGCTCACAAAGAGCCAATTA
*
72634041 ATCGGGATGCTCA
1 ATCGGGAAGCTCA
72634054 TAAGAGCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 4 0.12
26 27 0.84
27 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
ATCGGGAAGCTCACAAAGAGCCAATTA
Found at i:72635161 original size:27 final size:27
Alignment explanation
Indices: 72635131--72635243 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 27
72635121 TAAGTTGTAG
*
72635131 AATTATCGAAATACCCCTGTAAGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAA
* * * *
72635158 AATTACCAAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAA
* *
72635185 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAA
* * *
72635212 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAA
72635239 AATTA
1 AATTA
72635244 CCATTTTGCC
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAA
Found at i:72636004 original size:26 final size:27
Alignment explanation
Indices: 72635975--72636034 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
72635965 CCACATATAT
*
72635975 ATATCTGT-TCTGGTGGCCTAGTCACA
1 ATATCTGTATCTGGTGACCTAGTCACA
* *
72636001 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGTCACA
72636028 ATATCTG
1 ATATCTG
72636035 GCAGCCTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGTCACA
Found at i:72652488 original size:6 final size:6
Alignment explanation
Indices: 72652477--72652542 Score: 80
Period size: 6 Copynumber: 10.8 Consensus size: 6
72652467 TAAAAACATT
* *
72652477 ATCAGA ATCAGA ATCAGA ATCAGA ATTATGTG A-CAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
*
72652526 ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAG
72652543 GACACAGAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
5 1 0.02
6 48 0.92
7 2 0.04
8 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:72652550 original size:37 final size:37
Alignment explanation
Indices: 72652477--72652552 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
72652467 TAAAAACATT
* * **
72652477 ATCAGAATCAGAATCAGAATCAGAATTATGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGAATCAGGACACAGA
*
72652514 ATCAGAATCAGAATCAGAATCAGTATCAGGACACAGA
1 ATCAGAATCAGAATCAGAATCAGAATCAGGACACAGA
72652551 AT
1 AT
72652553 AAAAAATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (37 bp):
ATCAGAATCAGAATCAGAATCAGAATCAGGACACAGA
Found at i:72652732 original size:27 final size:28
Alignment explanation
Indices: 72652702--72652803 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 28
72652692 GCTCAGTTAT
*
72652702 CAGATATTGTGACAGAGTCACCA-AATA
1 CAGATATTGTGACAGAGCCACCAGAATA
*
72652729 CAGATATTGTGGCAGAGCCACCAGAAT-
1 CAGATATTGTGACAGAGCCACCAGAATA
* *
72652756 -AGATATTTGTGGCATAGCCACCAGAA-A
1 CAGATA-TTGTGACAGAGCCACCAGAATA
* * *
72652783 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
72652804 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 5 0.08
27 53 0.80
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (28 bp):
CAGATATTGTGACAGAGCCACCAGAATA
Found at i:72653834 original size:27 final size:27
Alignment explanation
Indices: 72653470--72653826 Score: 452
Period size: 27 Copynumber: 13.3 Consensus size: 27
72653460 TACCTCACAA
* *
72653470 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
72653497 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
72653524 GGTA-TTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
72653550 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
72653577 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
72653604 GGTATTCCGGTAATTCTACCCTAAAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
72653631 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
72653658 GGTATTTCAGTAATGCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
72653685 GGTATTCCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
72653712 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
72653739 GGTATTTCGGTAATT-T-CACAAATTAGG
1 GGTATTTCGGTAATTCTAC-CCTA-CAGG
* * ** *
72653766 GGTATTTTGGTAATTTTA-CAAAGTAGG
1 GGTATTTCGGTAATTCTACCCTA-CAGG
* *
72653793 GGTATTTTGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
72653820 GGTATTT
1 GGTATTT
72653827 TAGTAATTTC
Statistics
Matches: 293, Mismatches: 31, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.00
26 27 0.09
27 262 0.89
28 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:72653955 original size:81 final size:81
Alignment explanation
Indices: 72653839--72654062 Score: 310
Period size: 81 Copynumber: 2.8 Consensus size: 81
72653829 GTAATTTCAT
* * **
72653839 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAAGGT
1 AATCGAGGGTGAAACGGTAATTTTATAAATC-GAGGGTAAAATGGTAATTTTACAAATCGAAGGT
72653903 AAAACGGTAATTCT-GTA
65 AAAACGGTAATT-TGGTA
* * * *
72653920 AATCGAGGGTGAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTACAAATCGAGGGTA
1 AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAAGGTA
*
72653985 AAACTGTAATTTGGTA
66 AAACGGTAATTTGGTA
* *
72654001 AATTGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTACAAATC-AAGG
1 AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAAGG
72654063 GCATTTCAGT
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
80 4 0.03
81 121 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAAGGTA
AAACGGTAATTTGGTA
Found at i:72654057 original size:27 final size:27
Alignment explanation
Indices: 72653829--72654063 Score: 249
Period size: 27 Copynumber: 8.7 Consensus size: 27
72653819 GGGTATTTTA
*
72653829 GTAATTTCAT-AATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
72653855 GTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAATTTTATAAATC-GAGGGTAAAACG
* *
72653882 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* * * *
72653909 GTAATTCTGTAAATCGAGGGTGAAACA
1 GTAATTTTATAAATCGAGGGTAAAACG
**
72653936 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACG
* * *
72653963 GTAATTCTACAAATCGAGGGTAAAACT
1 GTAATTTTATAAATCGAGGGTAAAACG
** * *
72653990 GTAATTTGGTAAATTGAGGGTGAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
72654017 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
72654044 GTAATTTTACAAATCAAGGG
1 GTAATTTTATAAATCGAGGG
72654064 CATTTCAGTA
Statistics
Matches: 173, Mismatches: 33, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
26 9 0.05
27 163 0.94
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACG
Found at i:72655634 original size:17 final size:16
Alignment explanation
Indices: 72655612--72655643 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
72655602 GTATATACTA
72655612 AAAACTATAGTTAAACC
1 AAAACTATAG-TAAACC
72655629 AAAACTATAGTAAAC
1 AAAACTATAGTAAAC
72655644 TACTTGAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAACTATAGTAAACC
Found at i:72662081 original size:49 final size:49
Alignment explanation
Indices: 72662009--72662240 Score: 216
Period size: 49 Copynumber: 4.7 Consensus size: 49
72661999 AAGCTATCTT
* *
72662009 GTACACATAGTAGTCTGCACTTAGTACTACACATGCAACCAATTATTC-G
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATTA-TCGG
** ** *
72662058 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACC-AATTATCGG
* * * *
72662108 ATACACGTAGTAGCCTACACTTAGTACTACACACGTG-ATCGAAGTTATCGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCGG
** * * * * **
72662159 GTATGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCGG
* *
72662208 GTACATGTAGTAGCCTGCACTTAGTACCACACA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACA
72662241 CGTGACCGCA
Statistics
Matches: 146, Mismatches: 31, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
49 71 0.49
50 40 0.27
51 33 0.23
52 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCGG
Found at i:72662242 original size:100 final size:101
Alignment explanation
Indices: 72662065--72662245 Score: 267
Period size: 100 Copynumber: 1.8 Consensus size: 101
72662055 TCGGTACACG
** * *
72662065 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCAGATACACGTAGTAGCCTACACTT
*
72662130 AGTACTACACACGTGATCGAAGTTATCGGGTATGCA
66 AGTACCACACACGTGATCGAAGTTATCGGGTATGCA
* * *
72662166 TAGTAGCCTGCACTTAGTACTACACATACGACC-AATAATCCAG-TACATGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAAT-CAGATACACGTAGTAGCCTACACT
72662229 TAGTACCACACACGTGA
65 TAGTACCACACACGTGA
72662246 CCGCACAATA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 38 0.54
101 33 0.46
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCAGATACACGTAGTAGCCTACACTT
AGTACCACACACGTGATCGAAGTTATCGGGTATGCA
Found at i:72665423 original size:18 final size:19
Alignment explanation
Indices: 72665386--72665424 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
72665376 CTTACACATC
*
72665386 ATCATATACGTATCATTACA
1 ATCATATAC-TATCAGTACA
72665406 ATCATATA-TATCAGTACA
1 ATCATATACTATCAGTACA
72665424 A
1 A
72665425 GCAATTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (19 bp):
ATCATATACTATCAGTACA
Found at i:72667308 original size:40 final size:40
Alignment explanation
Indices: 72667077--72667301 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
72667067 TTGAATGATG
* * * *
72667077 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
72667117 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72667157 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72667196 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72667236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72667277 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72667302 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72667324 original size:119 final size:119
Alignment explanation
Indices: 72667084--72667334 Score: 305
Period size: 119 Copynumber: 2.1 Consensus size: 119
72667074 ATGTCCGGGC
*
72667084 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGATTAAGATCCGAAGGCATTTGTGCGAG
* * *
72667149 ATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGAGT
* * * *
72667203 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGATTAAGAT-CCGAAGGCATTTGTGCG
* * *
72667266 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-AGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATCCGAGT
* *
72667322 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
72667335 TACGTGATTT
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
118 3 0.03
119 78 0.68
120 33 0.29
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGATTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGAGT
Found at i:72673205 original size:28 final size:28
Alignment explanation
Indices: 72673142--72673292 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
72673132 ATATTAAGTC
*
72673142 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72673169 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
72673197 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72673225 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72673253 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72673282 CGCACACTTAG
1 CGCACACTTAG
72673293 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72678422 original size:158 final size:158
Alignment explanation
Indices: 72678134--72678447 Score: 592
Period size: 158 Copynumber: 2.0 Consensus size: 158
72678124 CAACATTGAG
* * * *
72678134 GATATTACAGTTGGCAACCCCTTTAAGTCCGTAGACTCAACTCGGATTATCTCGTTATTTGCGCC
1 GATATCACAGCTGGCAACCCCCTTAAGTCCGTAGACTCAACTCGGATTATCTCGTTATTTGCGCA
72678199 CCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAAC
66 CCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAAC
72678264 CAAGAATAACATCAAATTCGTCAAACCT
131 CAAGAATAACATCAAATTCGTCAAACCT
72678292 GATATCACAGCTGGCAACCCCCTTAAGTCCGTAGACTCAACTCGGATTATCTCGTTATTTGCGCA
1 GATATCACAGCTGGCAACCCCCTTAAGTCCGTAGACTCAACTCGGATTATCTCGTTATTTGCGCA
72678357 CCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAAC
66 CCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAAC
72678422 CAAGAATAACATCAAATTCGTCAAAC
131 CAAGAATAACATCAAATTCGTCAAAC
72678448 GGCAAAAGCA
Statistics
Matches: 152, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
158 152 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (158 bp):
GATATCACAGCTGGCAACCCCCTTAAGTCCGTAGACTCAACTCGGATTATCTCGTTATTTGCGCA
CCTCAAATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAAC
CAAGAATAACATCAAATTCGTCAAACCT
Found at i:72683195 original size:27 final size:27
Alignment explanation
Indices: 72683158--72683309 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
72683148 TAAATTGTGC
*
72683158 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
72683185 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
*
72683213 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
72683240 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAAT-TGACTATGT
* *
72683268 AGCACTAAGTGTGCGAATTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
72683295 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72683310 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 66 0.57
28 50 0.43
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:72683223 original size:55 final size:55
Alignment explanation
Indices: 72683158--72683309 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
72683148 TAAATTGTGC
*
72683158 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
72683213 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
72683268 AGCACTAAGTGTGCGAATTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCG
72683310 GACTTAATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:72685086 original size:28 final size:28
Alignment explanation
Indices: 72685023--72685173 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
72685013 ATATTAAGTC
* *
72685023 CGCACAGTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72685050 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
72685078 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72685106 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72685134 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72685163 CGCACACTTAG
1 CGCACACTTAG
72685174 CGCCAATCTC
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 21 0.19
28 75 0.67
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72688815 original size:140 final size:140
Alignment explanation
Indices: 72688588--72688866 Score: 504
Period size: 140 Copynumber: 2.0 Consensus size: 140
72688578 GGGTGTAGTC
* * *
72688588 TCACTACTATGGGATGAGGCTTATCAGTGGTGGCTGACTGTTAAGGAGGGCACTCAGCCTGAACG
1 TCACTACTACGGGATGAGGCTTATCAGTGGTGGCTGACTATTAAGGAGGGCACTCAGCCTGAACA
72688653 TCTAACCTAGGAGTTCTTCAAGACTGCCTTCCAGGGGAAATATGTGGGGGCGAGCTATGTGGATA
66 TCTAACCTAGGAGTTCTTCAAGACTGCCTTCCAGGGGAAATATGTGGGGGCGAGCTATGTGGATA
72688718 CTCGTAGGAG
131 CTCGTAGGAG
* *
72688728 TCACTACTACGGGATGAGGCTTATCAGTGGTGGCTGACTATTAAGGAGGGCATTTAGCCTGAACA
1 TCACTACTACGGGATGAGGCTTATCAGTGGTGGCTGACTATTAAGGAGGGCACTCAGCCTGAACA
*
72688793 TCTAACCTGGGAGTTCTTCAAGACTGCCTTCCAGGGGAAATATGTGGGGGCGAGCTATGTGGATA
66 TCTAACCTAGGAGTTCTTCAAGACTGCCTTCCAGGGGAAATATGTGGGGGCGAGCTATGTGGATA
72688858 CTCGTAGGA
131 CTCGTAGGA
72688867 AGGAGTTCTT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 133 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (140 bp):
TCACTACTACGGGATGAGGCTTATCAGTGGTGGCTGACTATTAAGGAGGGCACTCAGCCTGAACA
TCTAACCTAGGAGTTCTTCAAGACTGCCTTCCAGGGGAAATATGTGGGGGCGAGCTATGTGGATA
CTCGTAGGAG
Found at i:72694496 original size:176 final size:176
Alignment explanation
Indices: 72694202--72694555 Score: 690
Period size: 176 Copynumber: 2.0 Consensus size: 176
72694192 AATATATAAC
72694202 TCTTTTGCTCCCCCTGTTTCTTTTATATAAAAATATACTCCTTAATCTTTAATTCCATAATTCAT
1 TCTTTTGCTCCCCCTGTTTCTTTTATATAAAAATATACTCCTTAATCTTTAATTCCATAATTCAT
*
72694267 TTGAAATTCAACTCAACTTACACAATTTTTGGTGAATTTTCAAAGTCACACAACTGCTACTGTCC
66 CTGAAATTCAACTCAACTTACACAATTTTTGGTGAATTTTCAAAGTCACACAACTGCTACTGTCC
72694332 AACACTGTTTTACTACTAAAATTCACTCTTACATAATTTCACTTAA
131 AACACTGTTTTACTACTAAAATTCACTCTTACATAATTTCACTTAA
72694378 TCTTTTGCTCCCCCTGTTTCTTTTATATAAAAATATACTCCTTAATCTTTAATTCCATAATTCAT
1 TCTTTTGCTCCCCCTGTTTCTTTTATATAAAAATATACTCCTTAATCTTTAATTCCATAATTCAT
*
72694443 CTGAAATTCAACTCAACTTACACAATTTTTGGTGAATTTTCAAAGTCACACAACTGCTGCTGTCC
66 CTGAAATTCAACTCAACTTACACAATTTTTGGTGAATTTTCAAAGTCACACAACTGCTACTGTCC
72694508 AACACTGTTTTACTACTAAAATTCACTCTTACATAATTTCACTTAA
131 AACACTGTTTTACTACTAAAATTCACTCTTACATAATTTCACTTAA
72694554 TC
1 TC
72694556 CATTTTGTCT
Statistics
Matches: 176, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
176 176 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (176 bp):
TCTTTTGCTCCCCCTGTTTCTTTTATATAAAAATATACTCCTTAATCTTTAATTCCATAATTCAT
CTGAAATTCAACTCAACTTACACAATTTTTGGTGAATTTTCAAAGTCACACAACTGCTACTGTCC
AACACTGTTTTACTACTAAAATTCACTCTTACATAATTTCACTTAA
Found at i:72694909 original size:145 final size:145
Alignment explanation
Indices: 72694646--72694934 Score: 560
Period size: 145 Copynumber: 2.0 Consensus size: 145
72694636 CATATAATCA
72694646 TGCTCACATGTATTTTTACTTAATCGATTTTCCCGTTGAACTCTTTGGAATAATAACTGATACTC
1 TGCTCACATGTATTTTTACTTAATCGATTTTCCCGTTGAACTCTTTGGAATAATAACTGATACTC
72694711 AGTTGCCTACACATATTTTCACACTTGTAGCAAAAGCTATCTTGTACACATAGTAGTCTGCACTT
66 AGTTGCCTACACATATTTTCACACTTGTAGCAAAAGCTATCTTGTACACATAGTAGTCTGCACTT
72694776 AGTACTACACATGCG
131 AGTACTACACATGCG
*
72694791 TGCTCACATGTATTTTTACTTAATCGATTTTCCCGTTGAACTCTTTGGAATAATAACTGATACTT
1 TGCTCACATGTATTTTTACTTAATCGATTTTCCCGTTGAACTCTTTGGAATAATAACTGATACTC
*
72694856 AGTTGCCTACACATATTTTCACACTTGTAGCCAAAGCTATCTTGTACACATAGTAGTCTGCACTT
66 AGTTGCCTACACATATTTTCACACTTGTAGCAAAAGCTATCTTGTACACATAGTAGTCTGCACTT
72694921 AGTACTACACATGC
131 AGTACTACACATGC
72694935 AACCAATTAT
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 142 1.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.36
Consensus pattern (145 bp):
TGCTCACATGTATTTTTACTTAATCGATTTTCCCGTTGAACTCTTTGGAATAATAACTGATACTC
AGTTGCCTACACATATTTTCACACTTGTAGCAAAAGCTATCTTGTACACATAGTAGTCTGCACTT
AGTACTACACATGCG
Found at i:72694971 original size:49 final size:49
Alignment explanation
Indices: 72694899--72695130 Score: 198
Period size: 49 Copynumber: 4.7 Consensus size: 49
72694889 AAGCTATCTT
* *
72694899 GTACACATAGTAGTCTGCACTTAGTACTACACATGCAACCAATTATTC-G
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATTA-TCGG
** ** *
72694948 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACC-AATTATCGG
* * * * *
72694998 ATACACGTAGTAGCCTACACTTAGTACTACACACGTG-ATCGAAGTTAACGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCGG
** * * * * **
72695049 GTATGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCGG
* * *
72695098 ATACATGTAGTAGCCTGCACTTAGTACCACACA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACA
72695131 CGTGACCGCA
Statistics
Matches: 143, Mismatches: 34, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
49 69 0.48
50 40 0.28
51 32 0.22
52 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCGG
Found at i:72695130 original size:100 final size:101
Alignment explanation
Indices: 72694955--72695135 Score: 274
Period size: 100 Copynumber: 1.8 Consensus size: 101
72694945 TCGGTACACG
** * **
72694955 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCCAATACACGTAGTAGCCTACACTT
*
72695020 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
66 AGTACCACACACGTGATCGAAGTTAACGGGTATGCA
* * *
72695056 TAGTAGCCTGCACTTAGTACTACACATACGACC-AATAATCCAATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCCAATACACGTAGTAGCCTACACTT
72695120 AGTACCACACACGTGA
66 AGTACCACACACGTGA
72695136 CCGCACAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 40 0.56
101 31 0.44
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCCAATACACGTAGTAGCCTACACTT
AGTACCACACACGTGATCGAAGTTAACGGGTATGCA
Found at i:72695407 original size:159 final size:159
Alignment explanation
Indices: 72695118--72695437 Score: 622
Period size: 159 Copynumber: 2.0 Consensus size: 159
72695108 TAGCCTGCAC
72695118 TTAGTACCACACACGTGACCGCACAATAGATCATTCGTATCGTTTCTATTCCGAAGGCTCAACCG
1 TTAGTACCACACACGTGACCGCACAATAGATCATTCGTATCGTTTCTATTCCGAAGGCTCAACCG
72695183 GGAAATTCCTCACTTTCCAACATGTTACAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACA
66 GGAAATTCCTCACTTTCCAACATGTTACAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACA
*
72695248 ACAAATAATCATTATATAGGTAGCCACAT
131 ACAAATAATCATTATATAGGCAGCCACAT
72695277 TTAGTACCACACACGTGACCGCACAATAGATCATTCGTATCGTTTCTATTCCGAAGGCTCAACCG
1 TTAGTACCACACACGTGACCGCACAATAGATCATTCGTATCGTTTCTATTCCGAAGGCTCAACCG
*
72695342 GGTAATTCCTCACTTTCCAACATGTTACAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACA
66 GGAAATTCCTCACTTTCCAACATGTTACAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACA
72695407 ACAAATAATCATTATATAGGCAGCCACAT
131 ACAAATAATCATTATATAGGCAGCCACAT
72695436 TT
1 TT
72695438 CAATTTATTC
Statistics
Matches: 159, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
159 159 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (159 bp):
TTAGTACCACACACGTGACCGCACAATAGATCATTCGTATCGTTTCTATTCCGAAGGCTCAACCG
GGAAATTCCTCACTTTCCAACATGTTACAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACA
ACAAATAATCATTATATAGGCAGCCACAT
Found at i:72695480 original size:69 final size:69
Alignment explanation
Indices: 72695369--72695506 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
72695359 CAACATGTTA
72695369 CAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACAACAAATAATCATTATATAGGCAGCCAC
1 CAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACAACAAATAATCATTATATAGGCAGCCAC
72695434 ATTT
66 ATTT
*
72695438 CAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACAACAAATAATCATTATATAGGTAGCCAC
1 CAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACAACAAATAATCATTATATAGGCAGCCAC
72695503 ATTT
66 ATTT
72695507 AATATGATAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.41
Consensus pattern (69 bp):
CAATTTATTCATTGTCCTTTTTCAATTTGCAATTTACAACAAATAATCATTATATAGGCAGCCAC
ATTT
Found at i:72701246 original size:71 final size:72
Alignment explanation
Indices: 72701148--72701306 Score: 275
Period size: 72 Copynumber: 2.2 Consensus size: 72
72701138 GAAAGGGGGA
72701148 ATTTTGTTCATCCTTTTCTCATCTTCATGCTTGCC-AAAACTAGAAAGAAAAACAAAGAAAAAAT
1 ATTTTGTTCATCC-TTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAAAACAAAGAAAAAAT
72701212 TTCTCATC
65 TTCTCATC
*
72701220 ATTTTGTTCATCCTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAAAACAAAGAAAAATTT
1 ATTTTGTTCATCCTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAAAACAAAGAAAAAATT
72701285 TCTCATC
66 TCTCATC
* *
72701292 CTTTGGTTCATCCTT
1 ATTTTGTTCATCCTT
72701307 GGCCAAAAAT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
71 21 0.25
72 62 0.75
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (72 bp):
ATTTTGTTCATCCTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAAAACAAAGAAAAAATT
TCTCATC
Found at i:72702354 original size:40 final size:40
Alignment explanation
Indices: 72702324--72702493 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
72702314 GGACTAAGAT
* *
72702324 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
72702364 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
72702404 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
72702444 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
72702483 CCGAAGGCATT
1 CCGAAGGCATT
72702494 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:72702420 original size:80 final size:79
Alignment explanation
Indices: 72702271--72702493 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
72702261 TTGAATGCTG
* * * ** * * * * *
72702271 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
72702335 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
72702351 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
72702416 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
72702431 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
72702494 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:72702513 original size:79 final size:80
Alignment explanation
Indices: 72702346--72702528 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
72702336 GTGCGAGATA
* * *
72702346 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
72702411 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
72702426 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
72702490 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
72702505 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
72702529 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:72704994 original size:40 final size:40
Alignment explanation
Indices: 72704939--72705080 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
72704929 TATTCGAATG
*
72704939 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
72704979 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
72705019 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
72705059 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
72705081 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.15
40 78 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:72708598 original size:20 final size:21
Alignment explanation
Indices: 72708573--72708620 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
72708563 TATTATGATT
72708573 TAATTG-ATTTTTTAGCTTGC
1 TAATTGAATTTTTTAGCTTGC
*
72708593 TAATTGGAATTTTTTAGCTTGG
1 TAATT-GAATTTTTTAGCTTGC
72708615 TAATTG
1 TAATTG
72708621 GACTTGGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 5 0.20
21 2 0.08
22 18 0.72
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (21 bp):
TAATTGAATTTTTTAGCTTGC
Found at i:72708607 original size:22 final size:22
Alignment explanation
Indices: 72708579--72708622 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
72708569 GATTTAATTG
72708579 ATTTTTTAGCTTGCTAATTGGA
1 ATTTTTTAGCTTGCTAATTGGA
*
72708601 ATTTTTTAGCTTGGTAATTGGA
1 ATTTTTTAGCTTGCTAATTGGA
72708623 CTTGGCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.07, G:0.20, T:0.50
Consensus pattern (22 bp):
ATTTTTTAGCTTGCTAATTGGA
Found at i:72711392 original size:27 final size:28
Alignment explanation
Indices: 72711357--72711423 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 28
72711347 CAAATTAAAA
* *
72711357 ATATAAAAAATTATTTAATTTCAAA-TT
1 ATATTAAAAATTATTTAATTTAAAACTT
*
72711384 ATATTAAAAA-TATTTATTTTAAAACTT
1 ATATTAAAAATTATTTAATTTAAAACTT
* *
72711411 AAATTTAAAATTA
1 ATATTAAAAATTA
72711424 AAAAGGTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 12 0.36
27 19 0.58
28 2 0.06
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (28 bp):
ATATTAAAAATTATTTAATTTAAAACTT
Found at i:72711492 original size:18 final size:19
Alignment explanation
Indices: 72711456--72711493 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
72711446 TCTTAAAATA
72711456 AAAATATAAAATTTAATTT
1 AAAATATAAAATTTAATTT
* *
72711475 AAAA-ATAAATTTTCATTT
1 AAAATATAAAATTTAATTT
72711493 A
1 A
72711494 CCTAACTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATATAAAATTTAATTT
Found at i:72714111 original size:30 final size:31
Alignment explanation
Indices: 72714055--72714113 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
72714045 ATTTTTTAAA
*
72714055 TTTTAAAAAATTCATAAAATTGTAAAATTAT
1 TTTTAAAAAATTCATAAAATTATAAAATTAT
*
72714086 TTTTAAAATATT-A-AAAATGTATAAAATT
1 TTTTAAAAAATTCATAAAAT-TATAAAATT
72714114 TATAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 9 0.36
31 11 0.44
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (31 bp):
TTTTAAAAAATTCATAAAATTATAAAATTAT
Found at i:72714120 original size:39 final size:40
Alignment explanation
Indices: 72714040--72714134 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 40
72714030 GATAGCAATT
* * *
72714040 AATTAATTTTTTAAATTTTAAAAAATTCATAAAATTGT-AA
1 AATT-ATTTTTAAAATATTAAAAAATTCATAAAATTATAAA
72714080 AATTATTTTTAAAATATT-AAAAATGT-ATAAAATTTATAAAA
1 AATTATTTTTAAAATATTAAAAAAT-TCATAAAA-TTAT-AAA
72714121 AATATATTTTTAAA
1 AAT-TATTTTTAAA
72714135 TTTTTTAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
38 12 0.26
39 16 0.34
40 4 0.09
41 5 0.11
42 10 0.21
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.44
Consensus pattern (40 bp):
AATTATTTTTAAAATATTAAAAAATTCATAAAATTATAAA
Found at i:72714139 original size:9 final size:9
Alignment explanation
Indices: 72714127--72714152 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
72714117 AAAAAATATA
72714127 TTTTTAAAT
1 TTTTTAAAT
72714136 TTTTTAAAT
1 TTTTTAAAT
72714145 TTTTTAAA
1 TTTTTAAA
72714153 AAATGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:72735179 original size:30 final size:30
Alignment explanation
Indices: 72735143--72735205 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
72735133 ACTCAATAAT
* * *
72735143 CTATACTTGGGCAAAATGACCATTTTGCCC
1 CTATACTTGGACAAAATAACCATTTTACCC
**
72735173 CTATACTTTTACAAAATAACCATTTTACCC
1 CTATACTTGGACAAAATAACCATTTTACCC
72735203 CTA
1 CTA
72735206 GGTCCGAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (30 bp):
CTATACTTGGACAAAATAACCATTTTACCC
Found at i:72738478 original size:68 final size:66
Alignment explanation
Indices: 72738406--72738577 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
72738396 CATCATGTGT
* * * *
72738406 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
72738469 TGTAG
62 TGTAG
** * *
72738474 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
72738539 AG
65 AG
* * * *
72738541 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
72738578 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:72738511 original size:64 final size:64
Alignment explanation
Indices: 72738430--72738612 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
72738420 AGACATTATG
* * *
72738430 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
72738494 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72738559 AA
63 AA
* * *
72738561 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
72738613 TCGAACTATA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72739634 original size:15 final size:16
Alignment explanation
Indices: 72739616--72739645 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72739606 AGGGAAACTA
72739616 TGATAT-ATGAAATAT
1 TGATATAATGAAATAT
72739631 TGATATAATGAAATA
1 TGATATAATGAAATA
72739646 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TGATATAATGAAATAT
Found at i:72740481 original size:46 final size:47
Alignment explanation
Indices: 72740423--72740691 Score: 193
Period size: 47 Copynumber: 5.7 Consensus size: 47
72740413 GGGTTATTGT
*
72740423 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTG-TGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACGA-CGATGA
* * **
72740469 GAGCAAGTGTAAGAACATGTCTGGGACATGGCATCG-GCATCGA-GACAA
1 GAGCTAGTGTAAG-ACATGTCTGGGACAT-GCATCGACCA-CGACGATGA
* * * * *
72740517 GTGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA-GACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACGACGATG-A
* * *
72740564 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-ACGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACGACGATGA
* *
72740609 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGA--ATTGA-GAT-A
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCA-CGACGATGA
* *
72740655 TGAGCCAGTGTGAGACCATGTCTGGGACATGGCATCG
1 -GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
72740692 GTACTTTACT
Statistics
Matches: 185, Mismatches: 22, Indels: 31
0.78 0.09 0.13
Matches are distributed among these distances:
45 2 0.01
46 72 0.39
47 84 0.45
48 26 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACGACGATGA
Found at i:72740680 original size:140 final size:140
Alignment explanation
Indices: 72740428--72740685 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
72740418 ATTGTGAGCT
*
72740428 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTGTGAGAGCAAGTGTAAGAACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATCGTGAGAGCAAGTGTAAGAACATGTCTGG
* * *
72740493 GACATGGCATCGGCATCGAGACAAGTGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA
66 GACATGGCATCGGAATCGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA
72740558 GACGTAAGCC
131 GACGTAAGCC
* * * *
72740568 AGTGTAAGACATGTCTGGGACATGCATCGGCTACA-CGATGATAGTC-AGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATCG-TGAGAG-CAAGTGTAAGAACATGTCT
* * * *
72740631 GGGACATGGCATC-GAATTGAGATATGAGCCAGTGTGAGACCATGTCTGGGACATG
64 GGGACATGGCATCGGAATCGAGACAAGAGCCAGTGTAAGA-CATGTCTGGGACATG
72740686 GCATCGGTAC
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
139 20 0.19
140 82 0.80
141 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATCGTGAGAGCAAGTGTAAGAACATGTCTGG
GACATGGCATCGGAATCGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA
GACGTAAGCC
Found at i:72744743 original size:51 final size:51
Alignment explanation
Indices: 72744622--72745560 Score: 1759
Period size: 51 Copynumber: 18.6 Consensus size: 51
72744612 CCCTTCGGGA
* * * * *
72744622 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
72744670 C-TGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72744718 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72744769 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72744820 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72744871 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72744922 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72744973 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745024 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745075 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745126 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745177 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745228 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745279 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745330 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745381 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745432 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
72745483 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-C-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
72745532 CTTATCACATAGATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
72745561 TATTCAAATA
Statistics
Matches: 877, Mismatches: 8, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 37 0.04
48 2 0.00
49 33 0.04
50 1 0.00
51 803 0.92
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (51 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:72753482 original size:47 final size:45
Alignment explanation
Indices: 72753423--72753545 Score: 135
Period size: 47 Copynumber: 2.6 Consensus size: 45
72753413 CAGGCTAATA
72753423 CATGTCCCAGACATGTATTACACTAGCTCTCGTCTCAAT-T-CCGATG
1 CATGTCCCAGACATGTATTACACTAGCTCTCG--T-AATGTGCCGATG
* *
72753469 CCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTATTACACTAGCTCTCGTAATGT-GCCGATG
*
72753517 CATGTCCCAGACATGTCA-TACATTAGCTC
1 CATGTCCCAGACATGT-ATTACACTAGCTC
72753546 ACAATAAACC
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
45 3 0.05
46 13 0.20
47 28 0.42
48 22 0.33
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTATTACACTAGCTCTCGTAATGTGCCGATG
Found at i:72753905 original size:30 final size:30
Alignment explanation
Indices: 72753843--72753905 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
72753833 ACTCAATAAT
* *
72753843 CTATACTTGGGCAAAATGACCATTTTGCCC
1 CTATACTTGGGCAAAATAACCATTTTACCC
** *
72753873 CTATACTTTTGCAAAATAACCATTTTATCC
1 CTATACTTGGGCAAAATAACCATTTTACCC
72753903 CTA
1 CTA
72753906 GGTTCGAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (30 bp):
CTATACTTGGGCAAAATAACCATTTTACCC
Found at i:72755092 original size:11 final size:11
Alignment explanation
Indices: 72755076--72755107 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
72755066 TTATGATTGC
72755076 GATTGAATGAT
1 GATTGAATGAT
72755087 GATTGAATGAT
1 GATTGAATGAT
*
72755098 GATTGCATGA
1 GATTGAATGA
72755108 ATTATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.34
Consensus pattern (11 bp):
GATTGAATGAT
Found at i:72756712 original size:32 final size:33
Alignment explanation
Indices: 72756643--72756714 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
72756633 GAGCTTATTC
* *
72756643 TTTATTTTGATATTTATATTTTTGGTAATTAGG
1 TTTATTTTGATATTTATATTTTTGGTAATAAGA
*
72756676 TTTATTTTGATATTTGTA-TTTTGGT-ATAAAGA
1 TTTATTTTGATATTTATATTTTTGGTAAT-AAGA
72756708 TTTATTT
1 TTTATTT
72756715 GACCTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
31 2 0.06
32 16 0.46
33 17 0.49
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (33 bp):
TTTATTTTGATATTTATATTTTTGGTAATAAGA
Found at i:72756944 original size:30 final size:29
Alignment explanation
Indices: 72756909--72756989 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 29
72756899 ATTTTTTTAA
72756909 ATTTTAAAAAATTAAAAAATATAAAAACTT
1 ATTTTAAAAAATTAAAAAATATAAAAAC-T
* * *
72756939 ATTTTAAATAATTAAAAATTATTAAAACT
1 ATTTTAAAAAATTAAAAAATATAAAAACT
*
72756968 A-ATT-AAAAATATAAAAAATATA
1 ATTTTAAAAAAT-TAAAAAATATA
72756990 TTTTTTCATT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
27 5 0.12
28 11 0.26
29 2 0.05
30 25 0.58
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (29 bp):
ATTTTAAAAAATTAAAAAATATAAAAACT
Found at i:72756960 original size:20 final size:19
Alignment explanation
Indices: 72756920--72756977 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
72756910 TTTTAAAAAA
*
72756920 TTAAAAAATATAAAAACTTATT
1 TTAAATAAT-TAAAAA-TTA-T
72756942 TTAAATAATTAAAAATTAT
1 TTAAATAATTAAAAATTAT
*
72756961 TAAAACTAATTAAAAAT
1 TTAAA-TAATTAAAAAT
72756978 ATAAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.15
20 14 0.42
21 6 0.18
22 8 0.24
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
TTAAATAATTAAAAATTAT
Found at i:72756962 original size:10 final size:10
Alignment explanation
Indices: 72756907--72756991 Score: 54
Period size: 10 Copynumber: 8.8 Consensus size: 10
72756897 TAATTTTTTT
72756907 AAATT-TTAA
1 AAATTATTAA
72756916 AAA--ATTAA
1 AAATTATTAA
*
72756924 AAAATA-TAA
1 AAATTATTAA
**
72756933 AAACTTATTTT
1 AAA-TTATTAA
*
72756944 AAATAATTAA
1 AAATTATTAA
72756954 AAATTATTAA
1 AAATTATTAA
* *
72756964 AACTAATTAA
1 AAATTATTAA
*
72756974 AAA-TATAAA
1 AAATTATTAA
72756983 AAATATATT
1 AAAT-TATT
72756992 TTTTCATTTT
Statistics
Matches: 56, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
8 7 0.12
9 16 0.29
10 26 0.46
11 7 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (10 bp):
AAATTATTAA
Found at i:72756985 original size:20 final size:20
Alignment explanation
Indices: 72756947--72756984 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72756937 TTATTTTAAA
*
72756947 TAATTAAAAATTATTAAAAC
1 TAATTAAAAATTATAAAAAC
72756967 TAATTAAAAA-TATAAAAA
1 TAATTAAAAATTATAAAAA
72756985 ATATATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
TAATTAAAAATTATAAAAAC
Found at i:72759186 original size:36 final size:36
Alignment explanation
Indices: 72759139--72759210 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
72759129 TATCATCTCA
72759139 GTGCTACCATATTTTCCCTGAAATATTACGGCATTC
1 GTGCTACCATATTTTCCCTGAAATATTACGGCATTC
*
72759175 GTGCTACCATATTTTCCCTGAAATATTAGGGCATTC
1 GTGCTACCATATTTTCCCTGAAATATTACGGCATTC
72759211 CTATACTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (36 bp):
GTGCTACCATATTTTCCCTGAAATATTACGGCATTC
Found at i:72760056 original size:48 final size:47
Alignment explanation
Indices: 72759982--72760075 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
72759972 AACACCTGTA
72759982 CAAGTGAATTTCAAAGGCGTTTTTTTTTTTAAAATTATTTTTCTAAT
1 CAAGTGAATTTCAAAGGCGTTTTTTTTTTTAAAATTATTTTTCTAAT
72760029 CAAGTGAATTTCAAAGGCGTTTTTTTTTTTAAAATTATTTTTCTAAT
1 CAAGTGAATTTCAAAGGCGTTTTTTTTTTTAAAATTATTTTTCTAAT
72760076 ATAAGTTAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.51
Consensus pattern (47 bp):
CAAGTGAATTTCAAAGGCGTTTTTTTTTTTAAAATTATTTTTCTAAT
Found at i:72765006 original size:16 final size:16
Alignment explanation
Indices: 72764985--72765016 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72764975 AGAACGGAGT
72764985 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
72765001 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
72765017 TAACACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:72765666 original size:180 final size:180
Alignment explanation
Indices: 72765328--72765667 Score: 482
Period size: 180 Copynumber: 1.9 Consensus size: 180
72765318 CATCCGAGAG
* * ** * *
72765328 CTGTACCATGAGATAAATAATTTTTAGTGGAGAGAGGTTGGAACTGTCAGACAGTGAAACAGGGG
1 CTGTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGACAATGAAACAGGGG
* ** *
72765393 TATCTTTAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTATAAAAAATTTATGGTAAGAA
66 TATCTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTATAAAAAATTTATGGTAAGAA
* * * *
72765458 TATATGTGAGCCTAGTTTCTGGGAAAATTAGTTGTTCTCAATTTGGAGTC
131 GATATATGAGCCTAGTTTCAGCGAAAATTAGTTGTTCTCAATTTGGAGTC
* *
72765508 CTGTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCGGACAATGAAATAGGGG
1 CTGTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGACAATGAAACAGGGG
* * * *
72765573 TATCTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTCTGAAAATTTTATGGTAAGAG
66 TATCTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTATAAAAAATTTATGGTAAGAA
* *
72765638 GATATATGAGTCTATTTTCAGCGAAAATTA
131 GATATATGAGCCTAGTTTCAGCGAAAATTA
72765668 ATGGATCTTT
Statistics
Matches: 138, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
180 138 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (180 bp):
CTGTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGACAATGAAACAGGGG
TATCTTTAATGAATAAACTATACTAATTGAATAAACCAAAAATTATAAAAAATTTATGGTAAGAA
GATATATGAGCCTAGTTTCAGCGAAAATTAGTTGTTCTCAATTTGGAGTC
Found at i:72776337 original size:17 final size:18
Alignment explanation
Indices: 72776315--72776352 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
72776305 AAATTCTACT
72776315 AAATTTT-AGAAAATT-TA
1 AAATTTTCA-AAAATTATA
72776332 AAATTTTCAAAAATTATA
1 AAATTTTCAAAAATTATA
72776350 AAA
1 AAA
72776353 ATGAAAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (18 bp):
AAATTTTCAAAAATTATA
Found at i:72777761 original size:22 final size:23
Alignment explanation
Indices: 72777723--72777781 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
72777713 GGCATTATGG
72777723 TGCAAGTGACAGTGGCACTACAA
1 TGCAAGTGACAGTGGCACTACAA
* * *
72777746 TGCAAGTG-TAGTGGCACTTCAG
1 TGCAAGTGACAGTGGCACTACAA
72777768 TGCAAAGTGACAGT
1 TGC-AAGTGACAGT
72777782 CACATGTCCG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 14 0.47
23 13 0.43
24 3 0.10
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.22
Consensus pattern (23 bp):
TGCAAGTGACAGTGGCACTACAA
Found at i:72798744 original size:52 final size:52
Alignment explanation
Indices: 72798676--72798774 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
72798666 GAGGTTGTGG
* * *
72798676 CGAGCTCAAGATAGAGAGTCACATTGTGACAAGAAATACCTTGAGGTCGCAA
1 CGAGCTCAAGACAGAGAGTCACATCGTGACAAGAAAAACCTTGAGGTCGCAA
**
72798728 CGAGCTCAAGACAGAGAGTCACATCGTGATGAGAAAAACCTTGAGGT
1 CGAGCTCAAGACAGAGAGTCACATCGTGACAAGAAAAACCTTGAGGT
72798775 TACGACAAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.18
Consensus pattern (52 bp):
CGAGCTCAAGACAGAGAGTCACATCGTGACAAGAAAAACCTTGAGGTCGCAA
Found at i:72798791 original size:52 final size:52
Alignment explanation
Indices: 72798678--72798800 Score: 147
Period size: 52 Copynumber: 2.4 Consensus size: 52
72798668 GGTTGTGGCG
* * * * *
72798678 AGCTCAAGATAGAGAGTCACATTGTGACAAGAAATACCTTGAGGTCGCAACG
1 AGCTCAAGACAGAGAGTCACATCGTGACAAGAAAAACCTTGAGGTCACAACA
** * *
72798730 AGCTCAAGACAGAGAGTCACATCGTGATGAGAAAAACCTTGAGGTTACGACA
1 AGCTCAAGACAGAGAGTCACATCGTGACAAGAAAAACCTTGAGGTCACAACA
* *
72798782 AGCTTAAGACAAAGAGTCA
1 AGCTCAAGACAGAGAGTCA
72798801 TGCCGTGAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (52 bp):
AGCTCAAGACAGAGAGTCACATCGTGACAAGAAAAACCTTGAGGTCACAACA
Found at i:72806038 original size:42 final size:42
Alignment explanation
Indices: 72805976--72806085 Score: 166
Period size: 42 Copynumber: 2.6 Consensus size: 42
72805966 GTGCAGGTTT
* * *
72805976 CACATGGCTAAGACACACGCCTGTGTTCTAGGCCGTGTAGCA
1 CACACGGCTGAGACACACGCCTGTGTTCTAGGCCATGTAGCA
* *
72806018 CACACGGCTGAGACAGACGCCCGTGTTCTAGGCCATGTAGCA
1 CACACGGCTGAGACACACGCCTGTGTTCTAGGCCATGTAGCA
*
72806060 CACACGGCTGAGACACATGCCTGTGT
1 CACACGGCTGAGACACACGCCTGTGT
72806086 CTCTGCCCGT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (42 bp):
CACACGGCTGAGACACACGCCTGTGTTCTAGGCCATGTAGCA
Found at i:72807450 original size:57 final size:58
Alignment explanation
Indices: 72807361--72807501 Score: 153
Period size: 57 Copynumber: 2.4 Consensus size: 58
72807351 ATGTATATGA
* * ** * *
72807361 CTGGATTACCAGTTTAGGCTAAATCCTTTTTATGATATATGCTCTAA-A-GAGCTT-GAT
1 CTGGATTACCCGTTTGGGCTAAATCCAATTTATAACATATGCTC-AAGAGGA-CTTAGAT
* *
72807418 CTGGATTACCCGTTTGGGCTAAATCCAATTTATAACATATGCTCAAGAGGATTTATAT
1 CTGGATTACCCGTTTGGGCTAAATCCAATTTATAACATATGCTCAAGAGGACTTAGAT
* *
72807476 CAGGATTACCCGTCTGGGCTAAATCC
1 CTGGATTACCCGTTTGGGCTAAATCC
72807502 TTTCATAAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
56 2 0.03
57 41 0.58
58 28 0.39
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (58 bp):
CTGGATTACCCGTTTGGGCTAAATCCAATTTATAACATATGCTCAAGAGGACTTAGAT
Found at i:72809124 original size:150 final size:150
Alignment explanation
Indices: 72808853--72809154 Score: 559
Period size: 150 Copynumber: 2.0 Consensus size: 150
72808843 TCAGTTTTCG
*
72808853 TAAGAGTAATTCCCTAATTTTCTTCTTGTGCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTA
1 TAAGAGTAATTCCCCAATTTTCTTCTTGTGCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTA
*
72808918 AATCCCCTTATTTTTAGGCTAGATAATAAAAAGAAAGTTAAGAGTAGTACTTTTAGTTCCTGTGG
66 AATCCCCTTATTTTTAGGCTAGATAATAAAAAGAAAGTTAAGACTAGTACTTTTAGTTCCTGTGG
72808983 GTTCGACATTCTGGTCTTGC
131 GTTCGACATTCTGGTCTTGC
72809003 TAAGAGTAATTCCCCAATTTTCTTCTTGTGCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTA
1 TAAGAGTAATTCCCCAATTTTCTTCTTGTGCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTA
* *
72809068 AATCCCCTTATTTTTAGGCTAGATAATAAAAAGAAAGTTAATACTAGTACTTTTAGTTCTTGTGG
66 AATCCCCTTATTTTTAGGCTAGATAATAAAAAGAAAGTTAAGACTAGTACTTTTAGTTCCTGTGG
*
72809133 GTTTGACATTCTGGTCTTGC
131 GTTCGACATTCTGGTCTTGC
72809153 TA
1 TA
72809155 TAAACTATAC
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (150 bp):
TAAGAGTAATTCCCCAATTTTCTTCTTGTGCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTA
AATCCCCTTATTTTTAGGCTAGATAATAAAAAGAAAGTTAAGACTAGTACTTTTAGTTCCTGTGG
GTTCGACATTCTGGTCTTGC
Found at i:72817303 original size:20 final size:20
Alignment explanation
Indices: 72817280--72817318 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72817270 AAGGCTTTAC
* *
72817280 TTTATTTTTATTTTTATTTG
1 TTTACTTTTATCTTTATTTG
72817300 TTTACTTTTATCTTTATTT
1 TTTACTTTTATCTTTATTT
72817319 ACCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTACTTTTATCTTTATTTG
Found at i:72818991 original size:16 final size:16
Alignment explanation
Indices: 72818966--72818997 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72818956 AAATTTGAGA
72818966 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
*
72818982 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
72818998 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:72822818 original size:17 final size:17
Alignment explanation
Indices: 72822796--72822831 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
72822786 TCCGCCTCCT
72822796 TAACCCTCCATTAGTGA
1 TAACCCTCCATTAGTGA
72822813 TAACCCTCCATTAGTGA
1 TAACCCTCCATTAGTGA
72822830 TA
1 TA
72822832 CCCCAAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (17 bp):
TAACCCTCCATTAGTGA
Found at i:72823346 original size:103 final size:103
Alignment explanation
Indices: 72823167--72823373 Score: 378
Period size: 103 Copynumber: 2.0 Consensus size: 103
72823157 ATTGGGCGGA
* *
72823167 AACCCTGACAGCTCCTTAGGGAAAACATCAAGGAATTCCCTAACTATTCTCAACTCTTCAATAGT
1 AACCCTAACAGCTCCTTAGGGAAAACATCAAGGAATTCCCTAACTATTCTCAACTCCTCAATAGT
72823232 AGGGCTCTTAACCTCCGTGTCGCTAATGTATGCCAAAT
66 AGGGCTCTTAACCTCCGTGTCGCTAATGTATGCCAAAT
* *
72823270 AACCCTAACAGCTCCTTGGGGAAAACATCAAGGAATTCCCTAACTGTTCTCAACTCCTCAATAGT
1 AACCCTAACAGCTCCTTAGGGAAAACATCAAGGAATTCCCTAACTATTCTCAACTCCTCAATAGT
72823335 AGGGCTCTTAACCTCCGTGTCGCTAATGTATGCCAAAT
66 AGGGCTCTTAACCTCCGTGTCGCTAATGTATGCCAAAT
72823373 A
1 A
72823374 GGCTTCACAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (103 bp):
AACCCTAACAGCTCCTTAGGGAAAACATCAAGGAATTCCCTAACTATTCTCAACTCCTCAATAGT
AGGGCTCTTAACCTCCGTGTCGCTAATGTATGCCAAAT
Found at i:72828000 original size:47 final size:47
Alignment explanation
Indices: 72827946--72828281 Score: 429
Period size: 47 Copynumber: 7.1 Consensus size: 47
72827936 TTAGGATTTT
** * *
72827946 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
72827993 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
** * *
72828044 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** * * *
72828091 ATGTGATGAATGTGAACATGCGTATGTGTGATGAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* ** * *
72828138 ATGTGATGAATGTGAGCATGCGTATGTGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
72828185 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
72828232 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
72828279 ATG
1 ATG
72828282 CGAAATGTGT
Statistics
Matches: 260, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
47 212 0.82
49 11 0.04
51 37 0.14
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:72828071 original size:23 final size:23
Alignment explanation
Indices: 72828044--72828165 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
72828034 CGAATGGCCA
72828044 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* **
72828067 ATGTG-TGATAAG-GCCAA-ATGGCCA
1 ATGTGATGA-ATGTG--AACAT-GCGT
72828091 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* **
72828114 ATGTG-TGATGAGGTCG-A-ATGGCCA
1 ATGTGATGA--ATGT-GAACAT-GCGT
*
72828138 ATGTGATGAATGTGAGCATGCGT
1 ATGTGATGAATGTGAACATGCGT
72828161 ATGTG
1 ATGTG
72828166 TGATAAGGCC
Statistics
Matches: 72, Mismatches: 13, Indels: 28
0.64 0.12 0.25
Matches are distributed among these distances:
22 8 0.11
23 30 0.42
24 26 0.36
25 8 0.11
ACGTcount: A:0.29, C:0.11, G:0.33, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:72828168 original size:25 final size:24
Alignment explanation
Indices: 72828045--72828169 Score: 66
Period size: 25 Copynumber: 5.2 Consensus size: 24
72828035 GAATGGCCAA
72828045 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTG-ACATGCGTATG
* ** * * *
72828070 TGTGAT-AAGGCCAAATG-GCCA-A
1 TGTGATGAATGTGACATGCG-TATG
72828092 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTG-ACATGCGTATG
* * *
72828117 TGTGATG-AGGTCGA-ATG-GCCA-A
1 TGTGATGAATGT-GACATGCG-TATG
72828139 TGTGATGAATGTGAGCATGCGTATG
1 TGTGATGAATGTGA-CATGCGTATG
72828164 TGTGAT
1 TGTGAT
72828170 AAGGCCGAAT
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 17 0.24
23 15 0.21
24 16 0.23
25 22 0.31
ACGTcount: A:0.28, C:0.10, G:0.33, T:0.29
Consensus pattern (24 bp):
TGTGATGAATGTGACATGCGTATG
Found at i:72828391 original size:46 final size:46
Alignment explanation
Indices: 72828255--72828391 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
72828245 GAACATGTAT
* *
72828255 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
72828301 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
72828347 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
72828392 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:72839788 original size:37 final size:37
Alignment explanation
Indices: 72839732--72839810 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
72839722 CCGAGCTCTA
* * * *
72839732 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
72839769 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72839806 AAGAC
1 AAGAC
72839811 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72843050 original size:19 final size:19
Alignment explanation
Indices: 72843016--72843054 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
72843006 GGTTTCGTAC
*
72843016 TTTGGCCCATTTTCTCCGTT
1 TTTGGCCCAGTTTCT-CGTT
72843036 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
72843054 T
1 T
72843055 CTTTTGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Found at i:72847695 original size:6 final size:6
Alignment explanation
Indices: 72847665--72847758 Score: 75
Period size: 6 Copynumber: 15.3 Consensus size: 6
72847655 AAGAAACATT
* * *
72847665 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
72847714 ATCAGA ATCAGA ATCGGT ATCAAGA AACAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT
72847759 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
5 2 0.03
6 58 0.85
7 7 0.10
8 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:72847719 original size:25 final size:26
Alignment explanation
Indices: 72847686--72847755 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
72847676 AATCAAAATG
72847686 AGAATCAGAATCAGAATCAGGTGA-C-
1 AGAATCAGAATCAGAATCAGGT-ATCA
72847711 AGAATCAGAATCAGAATC-GGTATCA
1 AGAATCAGAATCAGAATCAGGTATCA
* *
72847736 AGAAACAGAATCAAAATCAG
1 AGAATCAGAATCAGAATCAG
72847756 AATGTGAATG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 34 0.85
26 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.20, T:0.16
Consensus pattern (26 bp):
AGAATCAGAATCAGAATCAGGTATCA
Found at i:72847723 original size:31 final size:31
Alignment explanation
Indices: 72847686--72847758 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
72847676 AATCAAAATG
* **
72847686 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAGAAACAGAATC
* *
72847717 AGAATCAGAATCGGTATCAAGAAACAGAATC
1 AGAATCAGAATCAGAATCAAGAAACAGAATC
*
72847748 AAAATCAGAAT
1 AGAATCAGAAT
72847759 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAGAAACAGAATC
Found at i:72847925 original size:27 final size:26
Alignment explanation
Indices: 72847877--72847936 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
72847867 GCGAGGCTAC
*
72847877 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
72847904 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
72847930 CAGATAT
1 CAGATAT
72847937 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72847949 original size:33 final size:32
Alignment explanation
Indices: 72847898--72847961 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
72847888 ACGAAGTCAC
* *
72847898 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
72847930 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
72847962 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:72848105 original size:27 final size:27
Alignment explanation
Indices: 72848065--72848283 Score: 285
Period size: 27 Copynumber: 8.1 Consensus size: 27
72848055 NNNNNNCCTA
* *
72848065 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
*
72848092 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
* *
72848119 AGGGTAAAACAGTAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTTTGTAAATCG
** *
72848146 AGGGTAAAACATTAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTTTGTAAATCG
** *
72848173 AGGGTAAAACAATAATTTTGTCAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
* *
72848200 AGGGTAAAACGATAATTTTATAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
**
72848227 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
* *
72848254 AGGGTAAAATGATAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTTTGTAAATCG
72848281 AGG
1 AGG
72848284 NGGGTAAACG
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.32
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTTTGTAAATCG
Found at i:72848149 original size:54 final size:54
Alignment explanation
Indices: 72848065--72848283 Score: 314
Period size: 54 Copynumber: 4.1 Consensus size: 54
72848055 NNNNNNCCTA
** * * *
72848065 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
* *
72848119 AGGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAAC-ATTAATTTTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAATCG
* * *
72848173 AGGGTAAAACAATAATTTTGTCAATCGAGGGTAAAACGATAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
* *
72848227 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
72848281 AGG
1 AGG
72848284 NGGGTAAACG
Statistics
Matches: 146, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
54 145 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.32
Consensus pattern (54 bp):
AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
Found at i:72848338 original size:83 final size:81
Alignment explanation
Indices: 72848065--72848342 Score: 265
Period size: 81 Copynumber: 3.4 Consensus size: 81
72848055 NNNNNNCCTA
* * ** *
72848065 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-
1 AGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACG
* * *
72848129 AGTAATTTTGTAAATTG
66 A-TAATTCTATAAATCG
* * ** * *
72848146 AGGGTAAAACATTAATTTTGTAAATTGAGGGTAAAACAATAATTTTGTCAATCGAGGGTAAAACG
1 AGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACG
*
72848211 ATAATTTTATAAATCG
66 ATAATTCTATAAATCG
** **
72848227 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGNGGGT-AA
1 AGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACAATAATTTTGTAAATCGA---GGGTAAA
*
72848291 ACGGTAATTCTATAAATC-
63 ACGATAATTCTATAAATCG
*** * *
72848309 AGGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 A-GGGTAAAATAGTAATTTTACAAATCGAGGGTA
72848343 TTTCAATAAT
Statistics
Matches: 166, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
81 117 0.70
82 2 0.01
83 43 0.26
84 4 0.02
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
AGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACG
ATAATTCTATAAATCG
Found at i:72848341 original size:27 final size:28
Alignment explanation
Indices: 72848309--72848517 Score: 153
Period size: 27 Copynumber: 7.7 Consensus size: 28
72848299 TCTATAAATC
*
72848309 AGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGGTATTTTGGTAATTTTACAAGTCG
*** *
72848337 A-GGGTATTTCAATAATTTTACAGGTCG
1 AGGGGTATTTTGGTAATTTTACAAGTCG
* * * *
72848364 A-GGGTATTTTAGTAATTTCACAAAT-T
1 AGGGGTATTTTGGTAATTTTACAAGTCG
* *
72848390 AGGGGTATTTTGGTAAATTTTACAA-ACT
1 AGGGGTATTTTGGT-AATTTTACAAGTCG
* * *
72848418 AGGGGTATTTTGATAATTTTACAA-ACC
1 AGGGGTATTTTGGTAATTTTACAAGTCG
* * * *
72848445 AGGGGTATTTTAGTAATTTTATAA-ACC
1 AGGGGTATTTTGGTAATTTTACAAGTCG
** * *
72848472 AGGGGTATTTTGGTAATTTTGTAA-ACC
1 AGGGGTATTTTGGTAATTTTACAAGTCG
*
72848499 AAGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
72848518 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.84
28 24 0.15
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAGTCG
Found at i:72848434 original size:82 final size:81
Alignment explanation
Indices: 72848304--72848517 Score: 234
Period size: 82 Copynumber: 2.6 Consensus size: 81
72848294 GTAATTCTAT
* * * ** ***
72848304 AAATCAGGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAAACCAG-GG
72848367 GTATTTTAGTAATTTCAC
64 GTATTTTAGTAATTTCAC
*
72848385 AAATTAGGGGTATTTTGGTAAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGG
1 AAATCAGGGGTATTTTGGT-AATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGG
* *
72848450 TATTTTAGTAATTTTAT
65 TATTTTAGTAATTTCAC
* ** * * *
72848467 AAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTT
72848518 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
81 44 0.39
82 63 0.56
83 5 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGT
ATTTTAGTAATTTCAC
Found at i:72848489 original size:54 final size:54
Alignment explanation
Indices: 72848294--72848517 Score: 200
Period size: 54 Copynumber: 4.1 Consensus size: 54
72848284 NGGGTAAACG
* * * * ** *
72848294 GTAATTCTATAAATCAGGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTA
* *** * * ** *
72848348 ATAATTTTACAGGTC-GAGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTG
1 GTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
* *
72848402 GTAAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTA
1 GT-AATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
* ** * *
72848457 GTAATTTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
72848511 GTAATTT
1 GTAATTT
72848518 GGTAAACTAA
Statistics
Matches: 136, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
53 1 0.01
54 91 0.67
55 43 0.32
56 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
Found at i:72848524 original size:27 final size:27
Alignment explanation
Indices: 72848365--72848517 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
72848355 TACAGGTCGA
* * * **
72848365 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
72848392 GGGTATTTTGGTAAATTTTACAAACTAG
1 GGGTATTTTGGT-AATTTTATAAACCAG
* *
72848420 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
72848447 GGGTATTTTAGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
72848474 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
72848501 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
72848518 GGTAAACTAA
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 90 0.79
28 24 0.21
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:72848532 original size:26 final size:27
Alignment explanation
Indices: 72848422--72848533 Score: 91
Period size: 27 Copynumber: 4.2 Consensus size: 27
72848412 CAAACTAGGG
* *** * *
72848422 GTATTTTGATAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTGGTAAACCAAGA
* ** * *
72848449 GTATTTTAGTAATTTTATAAACCAGGG
1 GTATTTTGGTAATTTGGTAAACCAAGA
* *
72848476 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTGGTAAACCAAGA
*
72848503 GTATTTTGGTAATTTGGTAAACTAA-A
1 GTATTTTGGTAATTTGGTAAACCAAGA
72848529 GTATT
1 GTATT
72848534 CTAAACAGGG
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
26 5 0.07
27 71 0.93
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTGGTAAACCAAGA
Found at i:72849480 original size:48 final size:48
Alignment explanation
Indices: 72849354--72849486 Score: 149
Period size: 48 Copynumber: 2.8 Consensus size: 48
72849344 GTGTTACAAT
* * * * *
72849354 GAGAGCCAGTGGAAGACCATGTCTAGGACATGGCATCGGTATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTAGGATATGGCATCGGCATCGACAC
* * * *
72849402 GAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGACAT
1 GAGAGCCAGTGTAAGACCATGTCTAGGATATGGCATCGGCATCGACAC
* * * *
72849450 GTGAGCCAGTGTAAGACCATATCTAAGATATGCCATC
1 GAGAGCCAGTGTAAGACCATGTCTAGGATATGGCATC
72849487 AACAATTTAC
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTAGGATATGGCATCGGCATCGACAC
Found at i:72853401 original size:39 final size:39
Alignment explanation
Indices: 72853351--72853644 Score: 484
Period size: 39 Copynumber: 7.5 Consensus size: 39
72853341 GTGTGAGATA
*
72853351 TATATCCGGGCTAATTCCCGAAGGCATTCGTGCTGGAT-T
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGG-TGT
*
72853390 TATATCAGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
72853429 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
72853468 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
72853507 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
72853546 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
72853585 TATATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
72853623 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
72853645 CATGCTTTGT
Statistics
Matches: 242, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
38 22 0.09
39 213 0.88
40 7 0.03
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:72862479 original size:79 final size:79
Alignment explanation
Indices: 72862378--72862560 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
72862368 TACTCGTTCA
* * *
72862378 AATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
1 AATGCCTTC-GGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCCGG
* *
72862441 ATTTAGTAAC-TCGCACC
63 ATATAGTAACTTAGCA-C
**
72862458 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
* *
72862523 TGGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
72862537 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
72862561 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 62 0.70
80 25 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:72862560 original size:40 final size:40
Alignment explanation
Indices: 72862357--72862560 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
72862347 CGGAATTTAA
** * *
72862357 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72862397 CCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72862437 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72862476 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72862516 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72862556 CCGGA
1 CCGGA
72862561 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72863838 original size:56 final size:56
Alignment explanation
Indices: 72863771--72863890 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72863761 TATTAGTTTA
72863771 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
72863827 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
72863883 TTGCCCAT
1 TTGCCCAT
72863891 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:72874712 original size:54 final size:54
Alignment explanation
Indices: 72874645--72874750 Score: 194
Period size: 54 Copynumber: 2.0 Consensus size: 54
72874635 TCTTATTGCA
*
72874645 AAGTCTTATAGCTTTAAACTCTACTCAGATTATCAGCGAGACCTTTAGCTCATG
1 AAGTCTTAGAGCTTTAAACTCTACTCAGATTATCAGCGAGACCTTTAGCTCATG
*
72874699 AAGTCTTAGAGCTTTAAACTCTACTCGGATTATCAGCGAGACCTTTAGCTCA
1 AAGTCTTAGAGCTTTAAACTCTACTCAGATTATCAGCGAGACCTTTAGCTCA
72874751 GATGAAATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (54 bp):
AAGTCTTAGAGCTTTAAACTCTACTCAGATTATCAGCGAGACCTTTAGCTCATG
Found at i:72878543 original size:40 final size:40
Alignment explanation
Indices: 72878497--72878609 Score: 199
Period size: 40 Copynumber: 2.8 Consensus size: 40
72878487 GAATACACAT
* *
72878497 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
72878537 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
72878577 CTCCAGCACGTATGCTCTTCGGGACTTAGCCCG
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCG
72878610 AATCATATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (40 bp):
CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:72883261 original size:28 final size:29
Alignment explanation
Indices: 72883150--72883268 Score: 186
Period size: 29 Copynumber: 4.1 Consensus size: 29
72883140 GAAAGCATGT
*
72883150 ATATGAATGTTATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72883179 ATTTGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72883208 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
72883237 ATATGAATAAGA-TTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
72883265 ATAT
1 ATAT
72883269 ACATGTATGT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 20 0.24
29 63 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:72885037 original size:40 final size:41
Alignment explanation
Indices: 72884982--72885075 Score: 131
Period size: 40 Copynumber: 2.3 Consensus size: 41
72884972 CAACTATGAT
*
72884982 TGGCACTAAGTGTGCG-GTTTAATATAGCTTCGGCTATA-AA
1 TGGCACTAAGTGTGCGAG-TTAACATAGCTTCGGCTATAGAA
**
72885022 TGGCACTAAGTGTGCGAGTTGGCATAGCTTCGGCTATAGAA
1 TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATAGAA
72885063 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
72885076 TGATACCGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 46 0.94
41 3 0.06
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATAGAA
Found at i:72888594 original size:28 final size:28
Alignment explanation
Indices: 72888551--72888656 Score: 135
Period size: 28 Copynumber: 3.8 Consensus size: 28
72888541 CATAACTGTA
72888551 AATGTGATTGGGCCTAAT-GGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* *
72888578 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
72888607 AATGTGA-TGGAGCCTAATGGGCCATATG
1 AATGTGATTGG-GCCTAATGGGCCATATG
* * *
72888635 AAAGAGATTGGGCCTAAAGGGC
1 AATGTGATTGGGCCTAATGGGC
72888657 TATTGATAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
27 10 0.15
28 41 0.60
29 17 0.25
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:72888646 original size:56 final size:56
Alignment explanation
Indices: 72888549--72888656 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
72888539 AGCATAACTG
* * *
72888549 TAAATGTGATTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAAAGGGCCACA
72888605 TAAATGTGA-TGGAGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAAAGGGC
1 TAAATGTGATTGG-GCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAAAGGGC
72888657 TATTGATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
55 3 0.06
56 30 0.64
57 14 0.30
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.25
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAAAGGGCCACA
Found at i:72889268 original size:23 final size:22
Alignment explanation
Indices: 72889232--72889307 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 22
72889222 TAGTTATGAC
*
72889232 TAAATTATGTTTTGAATTGTATAA
1 TAAA-TATTTTTTGAATTGTAT-A
72889256 TAAATATTTTTTGAATCTTGT-TA
1 TAAATATTTTTTGAA--TTGTATA
72889279 T---TATTTTTTGAATTGTATGA
1 TAAATATTTTTTGAATTGTAT-A
72889299 TAAATATTT
1 TAAATATTT
72889308 AACTTGTTCT
Statistics
Matches: 44, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
18 4 0.09
19 1 0.02
20 13 0.30
23 17 0.39
24 5 0.11
25 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.11, T:0.55
Consensus pattern (22 bp):
TAAATATTTTTTGAATTGTATA
Done.