Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 223 of 310
Found at i:73246866 original size:16 final size:17
Alignment explanation
Indices: 73246845--73246883 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
73246835 CTTGTAACGC
73246845 CCCAAAAATCCC-AAAA
1 CCCAAAAATCCCGAAAA
*
73246861 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAA
73246878 CCCAAA
1 CCCAAA
73246884 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.51, C:0.38, G:0.03, T:0.08
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAA
Found at i:73249583 original size:40 final size:40
Alignment explanation
Indices: 73249528--73249928 Score: 793
Period size: 40 Copynumber: 10.0 Consensus size: 40
73249518 CGGATGATAA
73249528 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249568 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249608 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249648 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249688 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249728 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249768 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249808 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249848 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
73249888 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
73249929 GAATTCTAGT
Statistics
Matches: 360, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
40 356 0.99
41 4 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:73262370 original size:40 final size:40
Alignment explanation
Indices: 73262320--73262502 Score: 158
Period size: 40 Copynumber: 4.6 Consensus size: 40
73262310 TTGAATGCTG
* *
73262320 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTGAATAAA
* * * *
73262360 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTGAATAAA
* * *
73262400 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG-TTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAG-TGAATAAA
* * ** * *
73262440 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGAATAAA
* *
73262479 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73262503 TGAACGAGGA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 81 0.66
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGAATAAA
Found at i:73262484 original size:39 final size:40
Alignment explanation
Indices: 73262373--73262502 Score: 199
Period size: 40 Copynumber: 3.3 Consensus size: 40
73262363 GGACTAAGAT
*
73262373 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
*
73262413 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
* * * *
73262453 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
73262492 CCGAAGGCATT
1 CCGAAGGCATT
73262503 TGAACGAGGA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.41
40 49 0.59
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
Found at i:73262522 original size:79 final size:79
Alignment explanation
Indices: 73262373--73262537 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 79
73262363 GGACTAAGAT
* * * ** ** *
73262373 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
73262438 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * *
73262453 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
73262517 TATCCGGTTAAATC
66 AATCCGGTTAAATC
73262531 CCGAAGG
1 CCGAAGG
73262538 TACGTGATTT
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.20
79 46 0.65
80 11 0.15
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:73263985 original size:27 final size:26
Alignment explanation
Indices: 73263954--73264169 Score: 245
Period size: 27 Copynumber: 8.0 Consensus size: 26
73263944 ATACTCCCGA
* *
73263954 AGGGTAAAATGACCGAAATACCCT-T
1 AGGGTAAAATGACCGTAATGCCCTGT
*
73263979 GATGGGTAAAATGATCGTAATGCCACTGT
1 -A-GGGTAAAATGACCGTAATGCC-CTGT
**
73264008 AGGGTAAAATGGTCGTAATGCCCTGT
1 AGGGTAAAATGACCGTAATGCCCTGT
**
73264034 AGGGTAAAATGGTCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATG-CCCTGT
* *
73264061 AGGGTAAAATGACTGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATG-CCCTGT
73264088 AGGGTAAAATGACCGTAATGCCCTTGT
1 AGGGTAAAATGACCGTAATGCCC-TGT
*
73264115 AGGGTAAAATGATCGTAATGCTCCTGT
1 AGGGTAAAATGACCGTAATGC-CCTGT
* *
73264142 AGGGTAAAATGACTGTAATACCCCTGT
1 AGGGTAAAATGACCGTAAT-GCCCTGT
73264169 A
1 A
73264170 AAATGATTGT
Statistics
Matches: 169, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
26 28 0.17
27 134 0.79
28 6 0.04
29 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
AGGGTAAAATGACCGTAATGCCCTGT
Found at i:73264152 original size:81 final size:80
Alignment explanation
Indices: 73263954--73264166 Score: 286
Period size: 80 Copynumber: 2.6 Consensus size: 80
73263944 ATACTCCCGA
* * * * * *
73263954 AGGGTAAAATGACCGAAATACCCTTG-ATGGGTAAAATGA-TCGTAATGCCACTGTAGGGTAAAA
1 AGGGTAAAATGATCGTAATGCCCCTGTA-GGGTAAAATGACT-GTAATGCCCCTATAGGGTAAAA
**
73264017 TGGTCGTAATGCCCTGT
64 TGACCGTAATGCCCTGT
*
73264034 AGGGTAAAATGGTCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTATAGGGTAAAATG
1 AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTATAGGGTAAAATG
73264099 ACCGTAATGCCCTTGT
66 ACCGTAATGCCC-TGT
* *
73264115 AGGGTAAAATGATCGTAATGCTCCTGTAGGGTAAAATGACTGTAATACCCCT
1 AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCT
73264167 GTAAAATGAT
Statistics
Matches: 118, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 64 0.54
81 54 0.46
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (80 bp):
AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTATAGGGTAAAATG
ACCGTAATGCCCTGT
Found at i:73264274 original size:24 final size:24
Alignment explanation
Indices: 73264246--73264304 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
73264236 TCTGTGGTTA
*
73264246 AATGACTGATTTGTCTGTG-TTTGG
1 AATGACTGATTTGTCTATGATTT-G
*
73264270 TATGACTGATTTGTCTATGATTTG
1 AATGACTGATTTGTCTATGATTTG
73264294 AATGACTGATT
1 AATGACTGATT
73264305 CTGAGCATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 28 0.90
25 3 0.10
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (24 bp):
AATGACTGATTTGTCTATGATTTG
Found at i:73264449 original size:26 final size:26
Alignment explanation
Indices: 73264420--73264473 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
73264410 TTGGCCACAT
* * *
73264420 ATACTATTATTGGCAGGTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTACG
* *
73264446 ATACTGTTGCTGGCAGCTTTGCTACG
1 ATACTATTACTGGCAGCTTTGCTACG
73264472 AT
1 AT
73264474 GCTACTGATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.37
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTACG
Found at i:73264517 original size:32 final size:32
Alignment explanation
Indices: 73264476--73264716 Score: 215
Period size: 32 Copynumber: 7.5 Consensus size: 32
73264466 GCTACGATGC
73264476 TACTGATGGCTTTGTG-TCGATCATAGTACTGT
1 TACTGATGGCTTTGTGCT-GATCATAGTACTGT
*
73264508 TACTGATGGCTTTGTGCTGATCATAGTACCGT
1 TACTGATGGCTTTGTGCTGATCATAGTACTGT
* * * **
73264540 TACTAATGGCTTTGTACTGATCATATTACCAT
1 TACTGATGGCTTTGTGCTGATCATAGTACTGT
* * * *
73264572 TA-TCGATGGCTGTGTGCCGATCAT-TTCAATGT
1 TACT-GATGGCTTTGTGCTGATCATAGT-ACTGT
* *
73264604 TACTGATGGCTGTGTGCTGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCTGATCATAGT-ACTGT
* * * **
73264636 CATTGATGGCTTTGTGCCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCTGATCATAG-TACTGT
* *
73264668 TACTGATGGCTGTGTGCTGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCTGATCATAGT-ACTGT
73264700 TACTGATGGCTTTGTGC
1 TACTGATGGCTTTGTGC
73264717 CAATCACATT
Statistics
Matches: 170, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
31 4 0.02
32 163 0.96
33 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCTGATCATAGTACTGT
Found at i:73264563 original size:64 final size:63
Alignment explanation
Indices: 73264476--73264722 Score: 257
Period size: 64 Copynumber: 3.9 Consensus size: 63
73264466 GCTACGATGC
* * *
73264476 TACTGATGGCTTTGTG-TCGATCATAGT-ACTGTTACTGATGGCTTTGTGCTGATCATAGTACCG
1 TACTGATGGCTGTGTGCT-GATCATA-TCACTGCTACTGATGGCTTTGTGCCGATCAT-GTACCG
73264539 T
63 T
* * * * *** * * **
73264540 TACTAATGGCTTTGTACTGATCATATTACCATTA-TCGATGGCTGTGTGCCGATCATTTCAATGT
1 TACTGATGGCTGTGTGCTGATCATATCACTGCTACT-GATGGCTTTGTGCCGATCATGT-ACCGT
* * *
73264604 TACTGATGGCTGTGTGCTGATCATATCACTGCCATTGATGGCTTTGTGCCGATCATGTTACCAT
1 TACTGATGGCTGTGTGCTGATCATATCACTGCTACTGATGGCTTTGTGCCGATCATG-TACCGT
*
73264668 TACTGATGGCTGTGTGCTGATCATATCACTGCTACTGATGGCTTTGTGCCAATCA
1 TACTGATGGCTGTGTGCTGATCATATCACTGCTACTGATGGCTTTGTGCCGATCA
73264723 CATTACTACA
Statistics
Matches: 152, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
63 3 0.02
64 146 0.96
65 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (63 bp):
TACTGATGGCTGTGTGCTGATCATATCACTGCTACTGATGGCTTTGTGCCGATCATGTACCGT
Found at i:73264645 original size:96 final size:96
Alignment explanation
Indices: 73264476--73264716 Score: 290
Period size: 96 Copynumber: 2.5 Consensus size: 96
73264466 GCTACGATGC
* * * *
73264476 TACTGATGGCTTTGTGTCGATCATAGT-ACTGTTACTGATGGCTTTGTGCTGATCATAGTACCGT
1 TACTGATGGCTGTGTGCCGATCATA-TCAATGTTACTGATGGCTTTGTGCTGATCATAGTACCGC
* *
73264540 TACTAATGGCTTTGTACTGATCATATTACCAT
65 CACTAATGGCTTTGTACCGATCATATTACCAT
* * *
73264572 TA-TCGATGGCTGTGTGCCGATCATTTCAATGTTACTGATGGCTGTGTGCTGATCATA-TCACTG
1 TACT-GATGGCTGTGTGCCGATCATATCAATGTTACTGATGGCTTTGTGCTGATCATAGT-ACCG
* * * *
73264635 CCATTGATGGCTTTGTGCCGATCATGTTACCAT
64 CCACTAATGGCTTTGTACCGATCATATTACCAT
* * *
73264668 TACTGATGGCTGTGTGCTGATCATATCACTGCTACTGATGGCTTTGTGC
1 TACTGATGGCTGTGTGCCGATCATATCAATGTTACTGATGGCTTTGTGC
73264717 CAATCACATT
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
95 3 0.02
96 119 0.97
97 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (96 bp):
TACTGATGGCTGTGTGCCGATCATATCAATGTTACTGATGGCTTTGTGCTGATCATAGTACCGCC
ACTAATGGCTTTGTACCGATCATATTACCAT
Found at i:73264759 original size:22 final size:22
Alignment explanation
Indices: 73264734--73264798 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
73264724 ATTACTACAC
73264734 TTATGGCTTCTAGCCATTCTGT
1 TTATGGCTTCTAGCCATTCTGT
* * * *
73264756 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTTCTAGCCATTCTGT
* *
73264778 TTACGAC-TCTTAGCCATTCTG
1 TTATGGCTTC-TAGCCATTCTG
73264799 ACTACTAGCA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.43
Consensus pattern (22 bp):
TTATGGCTTCTAGCCATTCTGT
Found at i:73266257 original size:23 final size:23
Alignment explanation
Indices: 73266227--73266302 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
73266217 TGAAAAGATT
* *
73266227 AGGGATTTCACAATTTGGTTTTA
1 AGGGATTTCACGATTTGGTTCTA
* *
73266250 AGGGATTTCATGATTTGGTTCTG
1 AGGGATTTCACGATTTGGTTCTA
73266273 AGGGATTTCACGATTTGGTTCTA
1 AGGGATTTCACGATTTGGTTCTA
*
73266296 AGCGATT
1 AGGGATT
73266303 AAGGATGTCG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.22, C:0.11, G:0.26, T:0.41
Consensus pattern (23 bp):
AGGGATTTCACGATTTGGTTCTA
Found at i:73269594 original size:62 final size:56
Alignment explanation
Indices: 73269507--73269654 Score: 172
Period size: 57 Copynumber: 2.5 Consensus size: 56
73269497 AATTGACAGT
* *
73269507 AAAAAGGATCTAGCCCGGACAGGTGATCCTATCCTGATATAGCCCTCCTGAAGAATATGTGTG
1 AAAAAGGATCTAGCCCGGACGGGTGAT-C--T--TGATATAGCCCTCCCGAAGAATA--TGTG
*
73269570 AAAAA-GATCTAGCCTGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTG
1 AAAAAGGATCTAGCCCGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTG
* *
73269625 AAAAATGGATTTAGCCCGGACGGGTAATCT
1 AAAAA-GGATCTAGCCCGGACGGGTGATCT
73269655 GAATTAGGGT
Statistics
Matches: 77, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
55 9 0.12
57 42 0.55
59 1 0.01
61 1 0.01
62 19 0.25
63 5 0.06
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (56 bp):
AAAAAGGATCTAGCCCGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTG
Found at i:73277038 original size:18 final size:19
Alignment explanation
Indices: 73277002--73277039 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73276992 TTAAAAACAA
73277002 GAAAGTGAATCTCTACATT
1 GAAAGTGAATCTCTACATT
73277021 GAAAGTAGAA-CT-TACATT
1 GAAAGT-GAATCTCTACATT
73277039 G
1 G
73277040 TACTCACCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 8 0.44
20 3 0.17
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (19 bp):
GAAAGTGAATCTCTACATT
Found at i:73282798 original size:46 final size:46
Alignment explanation
Indices: 73282745--73282835 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
73282735 AAAGAAAACC
*
73282745 CAAGAGAAAATTCTTGGAGAAACTTAAAGAGAATTCTCATTCAACT
1 CAAGAGAAAATTCTTGGAGAAACTCAAAGAGAATTCTCATTCAACT
* *
73282791 CAAGAGAACATTCTTTGAGAAACTCAAAGAGAATTCTCATTCAAC
1 CAAGAGAAAATTCTTGGAGAAACTCAAAGAGAATTCTCATTCAAC
73282836 AAAAATCTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (46 bp):
CAAGAGAAAATTCTTGGAGAAACTCAAAGAGAATTCTCATTCAACT
Found at i:73282826 original size:23 final size:23
Alignment explanation
Indices: 73282753--73282827 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
73282743 CCCAAGAGAA
* *
73282753 AATTCTTGGAGAAACTTAAAGAG
1 AATTCTTTGAGAAACTCAAAGAG
*
73282776 AATTCTCATT---CAACTC-AAGAG
1 AATTCT--TTGAGAAACTCAAAGAG
73282797 AACATTCTTTGAGAAACTCAAAGAG
1 -A-ATTCTTTGAGAAACTCAAAGAG
73282822 AATTCT
1 AATTCT
73282828 CATTCAACAA
Statistics
Matches: 40, Mismatches: 4, Indels: 16
0.67 0.07 0.27
Matches are distributed among these distances:
21 7 0.17
22 5 0.12
23 16 0.40
24 6 0.15
25 6 0.15
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (23 bp):
AATTCTTTGAGAAACTCAAAGAG
Found at i:73285644 original size:24 final size:25
Alignment explanation
Indices: 73285617--73285663 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
73285607 CCTTGGCTGA
*
73285617 ATTTTCACCATC-ATTCACTTAGTC
1 ATTTCCACCATCAATTCACTTAGTC
* *
73285641 ATTTCCATCATCAATTCATTTAG
1 ATTTCCACCATCAATTCACTTAG
73285664 CCAAATTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.28, C:0.26, G:0.04, T:0.43
Consensus pattern (25 bp):
ATTTCCACCATCAATTCACTTAGTC
Found at i:73285838 original size:12 final size:12
Alignment explanation
Indices: 73285823--73285879 Score: 60
Period size: 12 Copynumber: 4.6 Consensus size: 12
73285813 CGGAGTAAGT
73285823 ATTTGAAAAAAA
1 ATTTGAAAAAAA
73285835 ATTTCGAAAAAAA
1 ATTT-GAAAAAAA
* *
73285848 TTTTGAAAAGAA
1 ATTTGAAAAAAA
**
73285860 ATTCAAAAAAAA
1 ATTTGAAAAAAA
73285872 ATTGTGAA
1 ATT-TGAA
73285880 CATGGTTGTA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
12 22 0.63
13 13 0.37
ACGTcount: A:0.60, C:0.04, G:0.11, T:0.26
Consensus pattern (12 bp):
ATTTGAAAAAAA
Found at i:73285874 original size:25 final size:25
Alignment explanation
Indices: 73285824--73285871 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
73285814 GGAGTAAGTA
*
73285824 TTTGAAAAAAAATTTCGAAAAAAAT
1 TTTGAAAAAAAATTTCAAAAAAAAT
*
73285849 TTTGAAAAGAAA-TTCAAAAAAAA
1 TTTGAAAAAAAATTTCAAAAAAAA
73285872 ATTGTGAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.25
Consensus pattern (25 bp):
TTTGAAAAAAAATTTCAAAAAAAAT
Found at i:73293165 original size:34 final size:33
Alignment explanation
Indices: 73293122--73293194 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 33
73293112 GAAATCACGA
*
73293122 GAGTGAGAAGAGAGGTAAAAGGCACGAGAGTTT
1 GAGTGAGAAGAGAGGTAAAAGGAACGAGAGTTT
*
73293155 NGAGTGAGAAGAGCGGTAAAAGGAACGAGAGTTT
1 -GAGTGAGAAGAGAGGTAAAAGGAACGAGAGTTT
73293189 G-GTGAG
1 GAGTGAG
73293195 TTCATTAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 5 0.14
33 1 0.03
34 31 0.84
ACGTcount: A:0.37, C:0.05, G:0.41, T:0.15
Consensus pattern (33 bp):
GAGTGAGAAGAGAGGTAAAAGGAACGAGAGTTT
Found at i:73300389 original size:69 final size:70
Alignment explanation
Indices: 73300257--73300389 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
73300247 TAGTTTATTA
* * * * *
73300257 CTAATTAATTTGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
73300322 CTTAG
66 CTTAG
*
73300327 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
73300390 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 35 0.61
70 22 0.39
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:73301826 original size:47 final size:47
Alignment explanation
Indices: 73301772--73302123 Score: 614
Period size: 47 Copynumber: 7.5 Consensus size: 47
73301762 TATTTGAATA
* *
73301772 AATGTGAAAGTGTATATATGTGATAAGGCTTAATCGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
*
73301819 AATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* *
73301866 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
73301913 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* *
73301960 AATGTGAAAGTGTATATATGTGATACGGCCTAATAGCCGATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* *
73302007 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
*
73302054 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
73302101 AATGTGAAAGTGTATATATGTGA
1 AATGTGAAAGTGTATATATGTGA
73302124 GATGAATGTG
Statistics
Matches: 292, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 292 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:73302123 original size:16 final size:16
Alignment explanation
Indices: 73302102--73302150 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
73302092 GACGTGATGA
73302102 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
*
73302118 ATGTGAGA-TG---A-
1 ATGTGAAAGTGTATAT
73302129 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
73302145 ATGTGA
1 ATGTGA
73302151 TAAGGCTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
11 7 0.27
12 3 0.12
15 3 0.12
16 13 0.50
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.35
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:73302131 original size:27 final size:27
Alignment explanation
Indices: 73302097--73302150 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
73302087 TAGCCGACGT
73302097 GATGAATGTGAAAGTGTATATATGTGA
1 GATGAATGTGAAAGTGTATATATGTGA
73302124 GATGAATGTGAAAGTGTATATATGTGA
1 GATGAATGTGAAAGTGTATATATGTGA
73302151 TAAGGCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (27 bp):
GATGAATGTGAAAGTGTATATATGTGA
Found at i:73302135 original size:74 final size:74
Alignment explanation
Indices: 73302050--73302193 Score: 261
Period size: 74 Copynumber: 1.9 Consensus size: 74
73302040 TGGCCGACGT
73302050 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
73302115 TATATGTGA
66 TATATGTGA
* * *
73302124 GATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATCGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
73302189 TATAT
66 TATAT
73302194 ATGATAAGGC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (74 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
TATATGTGA
Found at i:73302148 original size:168 final size:168
Alignment explanation
Indices: 73301956--73302291 Score: 591
Period size: 168 Copynumber: 2.0 Consensus size: 168
73301946 TAGCCGATGT
*
73301956 GATGAATGTGAAAGTGTATATATGTGATACGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTA
*
73302021 TATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATATGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
73302086 ATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
131 ATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
* * *
73302124 GATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATCGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTA
*
73302189 TATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATATGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * *
73302254 ATGGCCTATGTGATGAATGTGAAAGTGTATATATGTGA
131 ATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
73302292 TAAGGCCTAA
Statistics
Matches: 159, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
168 159 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (168 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTA
TATATATGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:73302177 original size:47 final size:47
Alignment explanation
Indices: 73302124--73302389 Score: 424
Period size: 47 Copynumber: 5.7 Consensus size: 47
73302114 ATATATGTGA
* *
73302124 GATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATCGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
73302171 GATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
73302218 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCTATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
73302265 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
73302312 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
73302359 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
73302390 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 203 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:73302242 original size:25 final size:25
Alignment explanation
Indices: 73302214--73302292 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
73302204 CTAATGGCCG
73302214 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
73302239 ATGTGAT-AAGGCCTAA-TG-GCCT
1 ATGTGATGAATGTGAAAGTGTATAT
73302261 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
73302286 ATGTGAT
1 ATGTGAT
73302293 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 7 0.19
25 15 0.41
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:73302280 original size:215 final size:215
Alignment explanation
Indices: 73301909--73302338 Score: 779
Period size: 215 Copynumber: 2.0 Consensus size: 215
73301899 TGGCCGATGT
73301909 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
73301974 TATATGTGATACGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATATGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTA
73302039 ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
131 ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
73302104 GTGAAAGTGTATATATGTGA
196 GTGAAAGTGTATATATGTGA
* *
73302124 GATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATCGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
73302189 TATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATATGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * *
73302254 ATGGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
131 ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
73302319 GTGAAAGTGTATATATGTGA
196 GTGAAAGTGTATATATGTGA
73302339 TAGGGCCGAG
Statistics
Matches: 206, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
215 206 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (215 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
TATATATGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
GTGAAAGTGTATATATGTGA
Found at i:73302327 original size:262 final size:262
Alignment explanation
Indices: 73301862--73302385 Score: 886
Period size: 262 Copynumber: 2.0 Consensus size: 262
73301852 TAGCCGATGT
*
73301862 GATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATATGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTA
* *
73301927 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCCTA
66 TATATATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
73301992 ATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAAT
131 ATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
* * *
73302057 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGT
196 GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGT
73302122 GA
261 GA
* *
73302124 GATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATCGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATATGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTA
*
73302189 TATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * * *
73302254 ATGGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
131 ATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
* * * *
73302319 GTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGT
196 GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGT
73302384 GA
261 GA
73302386 TAAGTCCCGA
Statistics
Matches: 244, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
262 244 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (262 bp):
GATGAATGTGAAAGTGTATATATATGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTA
TATATATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGT
GA
Found at i:73307631 original size:40 final size:40
Alignment explanation
Indices: 73307574--73307783 Score: 237
Period size: 40 Copynumber: 5.2 Consensus size: 40
73307564 CTAACGGGGT
* * *
73307574 TAAGTCCCGAAGACATTTGTGCTAGCGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* * *
73307614 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* * *
73307654 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
* *
73307694 TAAGTCCTGAAGGCATTTGTG-TGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCT-AGTGACTAAT-TCCGGGC
** *
73307734 TAAGTCCCGAAGGCATTTGTGCTAACGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGC
*
73307774 TAAGACCCGA
1 TAAGTCCCGA
73307784 CGGCCTTGTG
Statistics
Matches: 150, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.01
40 147 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGC
Found at i:73307776 original size:80 final size:80
Alignment explanation
Indices: 73307574--73307777 Score: 279
Period size: 80 Copynumber: 2.5 Consensus size: 80
73307564 CTAACGGGGT
* *
73307574 TAAGTCCCGAAGACATTTGTGCTAGCGATTAATTCCGGGCTAAGTTCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGCGACTAATTCCGGGCTAAGTTCCGAAGGCATTTGTGCGAG
73307639 TTACTAATTCCGGGC
66 TTACTAATTCCGGGC
* ** * *
73307654 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGCTAAG-TCCTGAAGGCATTTGTGTGA
1 TAAGTCCCGAAGGCATTTGTGCTAGCGACTAATTCCGGGCTAAGTTCC-GAAGGCATTTGTGCGA
73307718 GTTACT-ATATCCGGGC
65 GTTACTAAT-TCCGGGC
* *
73307734 TAAGTCCCGAAGGCATTTGTGCTAACGAC-CATATCCGGGCTAAG
1 TAAGTCCCGAAGGCATTTGTGCTAGCGACTAAT-TCCGGGCTAAG
73307778 ACCCGACGGC
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 7 0.06
80 101 0.94
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCTAGCGACTAATTCCGGGCTAAGTTCCGAAGGCATTTGTGCGAG
TTACTAATTCCGGGC
Found at i:73314693 original size:27 final size:27
Alignment explanation
Indices: 73314674--73314830 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
73314664 ATTACCAAAG
*
73314674 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73314701 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73314728 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
73314755 TACCCTCAATTTACAGAAATACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73314782 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73314809 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
73314831 TAAAATACCC
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:73314721 original size:54 final size:54
Alignment explanation
Indices: 73314663--73314859 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
73314653 CAATTTGTAA
* *
73314663 AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
*** * *
73314717 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* *** * *
73314771 AAATACCGTTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* * * * *
73314825 AATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCA
73314860 AAATACCCCT
Statistics
Matches: 121, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
Found at i:73314839 original size:27 final size:27
Alignment explanation
Indices: 73314629--73314976 Score: 184
Period size: 27 Copynumber: 12.9 Consensus size: 27
73314619 AATACTTTAG
* * ** *
73314629 TTTACCAAATTACTAAAATGTCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
73314656 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
73314683 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
73314710 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
73314737 TTTATAGAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
****
73314764 TTTACAGAAA-TACCGTTTTACCCTCGA
1 TTTACA-AAATTACCAAAATACCCTCGA
* * ***
73314791 TTTACAGAATTATCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
73314818 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
73314845 TTTACAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
73314871 GTTTGTAAAATTACCAAAATACCACT-GG
1 -TTTACAAAATTACCAAAATACC-CTCGA
* * * **
73314899 TTTGCGAAATTACCGAAATACCCTTAA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
73314926 TTTGTAAAATCACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
73314953 TTTACAAAATTA-CATAAATACCCT
1 TTTACAAAATTACCA-AAATACCCT
73314977 TGACTTTCTA
Statistics
Matches: 257, Mismatches: 55, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
26 6 0.02
27 248 0.96
28 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:73314849 original size:81 final size:81
Alignment explanation
Indices: 73314661--73314854 Score: 264
Period size: 81 Copynumber: 2.4 Consensus size: 81
73314651 CTCAATTTGT
* * *
73314661 AAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAAATACCGTTTTACCCTCGATTTACAGAATTACCAT
*
73314726 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* *** * *
73314742 AGAATTACCATTTTACCCTCAATTTACAGAAATACCGTTTTACCCTCGATTTACAGAATTATCAT
1 AAAATTACCAAAATACCCTCGATTTACAGAAATACCGTTTTACCCTCGATTTACAGAATTACCAT
73314807 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *
73314823 AAAATTACTAAAATACCCTTGGTTTACA-AAAT
1 AAAATTACCAAAATACCCTCGATTTACAGAAAT
73314855 TACCAAAATA
Statistics
Matches: 96, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 4 0.04
81 92 0.96
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAAATACCGTTTTACCCTCGATTTACAGAATTACCAT
TTTACCCTCGATTTAC
Found at i:73314883 original size:81 final size:78
Alignment explanation
Indices: 73314809--73315041 Score: 200
Period size: 81 Copynumber: 2.9 Consensus size: 78
73314799 ATTATCATTT
*
73314809 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTT
1 TACCCT-GATTT-CAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTAGTT
*
73314874 TGTAAAATTACCAAAA
64 TGTAAAATTA-CATAA
* * ** * ** *
73314890 TACCACTGGTTTGCGAAATTACCGAAATACCCTTAATTTGTAAAATCACCAAAATACCCCT-GAT
1 TACC-CTGATTT-CAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTAG-T
**
73314954 TTACAAAATTACATAAA
63 TTGTAAAATTACAT-AA
* ** *
73314971 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTAGTTTACAAAATTACTGAAATACCCTTA
1 TACCC-TGA-TTTC--AAAATTACTA-AAATACCCTTAGTTTACAAAATTACCAAAATACCCCTA
73315035 GTTTGTA
61 GTTTGTA
73315042 GATTTACCAA
Statistics
Matches: 116, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
80 4 0.03
81 67 0.58
82 5 0.04
83 39 0.34
84 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (78 bp):
TACCCTGATTTCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTAGTTTG
TAAAATTACATAA
Found at i:73315026 original size:27 final size:27
Alignment explanation
Indices: 73314818--73315038 Score: 173
Period size: 27 Copynumber: 8.1 Consensus size: 27
73314808 TTACCCTCGA
* *
73314818 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTAG
*
73314845 TTTACAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTAG
** *
73314872 TTTGTAAAATTACCAAAATACCAC-TGG
1 TTTACAAAATTACCAAAATACC-CTTAG
* * * *
73314899 TTTGCGAAATTACCGAAATACCCTTAA
1 TTTACAAAATTACCAAAATACCCTTAG
** * *
73314926 TTTGTAAAATCACCAAAATACCCCT-G
1 TTTACAAAATTACCAAAATACCCTTAG
*
73314952 ATTTACAAAATTA-CATAAATACCCTTGAC
1 -TTTACAAAATTACCA-AAATACCCTT-AG
* *
73314981 TTT-CTAAAAATTA-TAGAAATACCATTAG
1 TTTAC--AAAATTACCA-AAATACCCTTAG
**
73315009 TTTACAAAATTACTGAAATACCCTTAG
1 TTTACAAAATTACCAAAATACCCTTAG
73315036 TTT
1 TTT
73315039 GTAGATTTAC
Statistics
Matches: 156, Mismatches: 28, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.02
27 126 0.81
28 9 0.06
29 18 0.12
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTAG
Found at i:73315156 original size:27 final size:27
Alignment explanation
Indices: 73315092--73315156 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
73315082 ACCCCAAATA
*
73315092 GGTAAAAAGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCATAAAGCCCCTGTAG
* * *
73315119 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCATAA-AGCCCCTGTAG
73315146 GGTAAAATGAC
1 GGTAAAATGAC
73315157 GAATATGCCG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCATAAAGCCCCTGTAG
Found at i:73315888 original size:20 final size:21
Alignment explanation
Indices: 73315853--73315909 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
73315843 TGATACATGG
73315853 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
73315871 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
73315892 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
73315910 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:73316012 original size:25 final size:24
Alignment explanation
Indices: 73315959--73316028 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 24
73315949 GAGGAAGTGC
**
73315959 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TG-CCCAGTTTACCG
73315985 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCC-AGTTTACCG
*
73316010 AAACA-GGCTTTACCCAGTT
1 AAA-AGGGCTTTGCCCAGTT
73316029 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 7 0.18
25 21 0.54
26 11 0.28
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCAGTTTACCG
Found at i:73319106 original size:27 final size:27
Alignment explanation
Indices: 73319076--73319132 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
73319066 ACCCCAGTTT
*
73319076 GTAAAATTACCGTAATGCCCCTGTAGG
1 GTAAAATTACCGTAATACCCCTGTAGG
*
73319103 GTAAAATTACCGTAATACCCCTGTATG
1 GTAAAATTACCGTAATACCCCTGTAGG
73319130 GTA
1 GTA
73319133 GAATGACGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCGTAATACCCCTGTAGG
Found at i:73319426 original size:22 final size:22
Alignment explanation
Indices: 73319382--73319434 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
73319372 TACAGCCTTT
* *
73319382 AGCCATCCTGTCTACGGCGTTG
1 AGCCATCCTGTCTACGACATTG
*
73319404 AGCCATCCTGTCTATGACATTG
1 AGCCATCCTGTCTACGACATTG
*
73319426 AGCCGTCCT
1 AGCCATCCT
73319435 ATTGACTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.17, C:0.32, G:0.23, T:0.28
Consensus pattern (22 bp):
AGCCATCCTGTCTACGACATTG
Found at i:73319608 original size:27 final size:27
Alignment explanation
Indices: 73319556--73319608 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73319546 ACATCTTATA
* *
73319556 CTGATTCTGTACTGGGCTTAGGCCCAC
1 CTGATTCTGTAATGGGCTTAGACCCAC
73319583 CTGATTCTGTTAATGGGC-TAGACCCA
1 CTGATTCTG-TAATGGGCTTAGACCCA
73319609 ACTATTACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTAATGGGCTTAGACCCAC
Found at i:73324278 original size:22 final size:22
Alignment explanation
Indices: 73324250--73324318 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
73324240 TCTCTGATAA
* *
73324250 TTAGCACGTTAGTGCTCTCTGT
1 TTAGCACATTTGTGCTCTCTGT
*
73324272 TTAGCACATTTGTGCTCTTTGT
1 TTAGCACATTTGTGCTCTCTGT
73324294 TTAGCACATTTGTGCTCTCTGT
1 TTAGCACATTTGTGCTCTCTGT
73324316 TTA
1 TTA
73324319 ATAGTGCATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.46
Consensus pattern (22 bp):
TTAGCACATTTGTGCTCTCTGT
Found at i:73324728 original size:14 final size:16
Alignment explanation
Indices: 73324704--73324736 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
73324694 ATTTTCAGTG
73324704 TTTATTATGTGT-GAA
1 TTTATTATGTGTGGAA
73324719 TTTA-TATGTGTGGAA
1 TTTATTATGTGTGGAA
73324734 TTT
1 TTT
73324737 TCGTGATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGGAA
Found at i:73329740 original size:9 final size:9
Alignment explanation
Indices: 73329726--73329792 Score: 62
Period size: 9 Copynumber: 7.4 Consensus size: 9
73329716 AAAGAAGATG
*
73329726 ATAATAGTA
1 ATAATAATA
73329735 ATAATAATA
1 ATAATAATA
* *
73329744 AGAAGAATA
1 ATAATAATA
* *
73329753 AGAATAAGA
1 ATAATAATA
*
73329762 ATAATTATA
1 ATAATAATA
73329771 ATAATAATA
1 ATAATAATA
* *
73329780 ATAGTAATG
1 ATAATAATA
73329789 ATAA
1 ATAA
73329793 CGGCTGTAAA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.28
Consensus pattern (9 bp):
ATAATAATA
Found at i:73329742 original size:6 final size:6
Alignment explanation
Indices: 73329726--73329792 Score: 62
Period size: 6 Copynumber: 11.2 Consensus size: 6
73329716 AAAGAAGATG
* * * * * *
73329726 ATAATA GTAATA ATAATA AGAAGA ATAAGA ATAAGA ATAATT ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* *
73329774 ATAATA ATAGTA ATGATA A
1 ATAATA ATAATA ATAATA A
73329793 CGGCTGTAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.28
Consensus pattern (6 bp):
ATAATA
Found at i:73329752 original size:15 final size:15
Alignment explanation
Indices: 73329734--73329774 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
73329724 TGATAATAGT
73329734 AATAATAATAAGAAG
1 AATAATAATAAGAAG
* *
73329749 AATAAGAATAAGAAT
1 AATAATAATAAGAAG
*
73329764 AATTATAATAA
1 AATAATAATAA
73329775 TAATAATAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (15 bp):
AATAATAATAAGAAG
Found at i:73331740 original size:41 final size:41
Alignment explanation
Indices: 73331683--73331764 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
73331673 TTCAACATTA
73331683 ATTCCACTCTCATTTAATTCTAGGGCATGCACTAACCGCTC
1 ATTCCACTCTCATTTAATTCTAGGGCATGCACTAACCGCTC
*
73331724 ATTCCACTCTCATTTAATTCTAGGGCATGCTCTAACCGCTC
1 ATTCCACTCTCATTTAATTCTAGGGCATGCACTAACCGCTC
73331765 TTTCAATCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.33
Consensus pattern (41 bp):
ATTCCACTCTCATTTAATTCTAGGGCATGCACTAACCGCTC
Found at i:73335552 original size:2 final size:2
Alignment explanation
Indices: 73335545--73335570 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
73335535 ACTGAAATAT
73335545 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
73335571 TTCTCTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:73337200 original size:49 final size:48
Alignment explanation
Indices: 73337145--73337239 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 48
73337135 AATGCCGAGA
*
73337145 GTAGTGTTAATATAGTTAGGAAAATCCCATCC-AAGCTTAAAAATCTNGT
1 GTAGTGTTAATATAGCTAGGAAAATCCCA-CCTAAGCTTAAAAATCT-GT
**
73337194 GTAGTGTTGGTATAGCTAGGAAAATCCCACCTAAGCTTAAAAATCT
1 GTAGTGTTAATATAGCTAGGAAAATCCCACCTAAGCTTAAAAATCT
73337240 CGAAAGCTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
48 2 0.05
49 40 0.95
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (48 bp):
GTAGTGTTAATATAGCTAGGAAAATCCCACCTAAGCTTAAAAATCTGT
Found at i:73348807 original size:47 final size:48
Alignment explanation
Indices: 73348741--73348912 Score: 187
Period size: 47 Copynumber: 3.7 Consensus size: 48
73348731 CATCCACAAG
*
73348741 TGAACTCGGACTCAACTCAACAAGCTCGA-ATGCCTAGTTACATCTCT
1 TGAACTCGGACTCAACTCAACGAGCTCGACATGCCTAGTTACATCTCT
* * ***
73348788 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T-CAT-AAG
1 TGAACTCGGACTCAACTCAACGAGCTC-GACATGC-CTAGTTACATCTCT
*
73348833 TGAACTCGGACTCAACTCAACGAGCTC-AGATGCCTAGTTACATCTCT
1 TGAACTCGGACTCAACTCAACGAGCTCGACATGCCTAGTTACATCTCT
* *
73348880 CGAACTCGGACTCAACTCAACGAGTTCGGACAT
1 TGAACTCGGACTCAACTCAACGAGCTC-GACAT
73348913 TCGCATCCAT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
45 27 0.27
46 6 0.06
47 51 0.51
48 2 0.02
49 7 0.07
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (48 bp):
TGAACTCGGACTCAACTCAACGAGCTCGACATGCCTAGTTACATCTCT
Found at i:73348866 original size:92 final size:93
Alignment explanation
Indices: 73348695--73348959 Score: 435
Period size: 92 Copynumber: 2.9 Consensus size: 93
73348685 CGCCCATAAG
* * * *
73348695 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73348760 ACAAGCTCGAATGCCTAGTTACATCTCT
66 ACGAGCTCGAATGCCTAGTTACATCTCT
*
73348788 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT-CATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73348852 ACGAGCTC-AGATGCCTAGTTACATCTCT
66 ACGAGCTCGA-ATGCCTAGTTACATCTCT
*
73348880 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73348945 ACGAGTTCGAATGCC
66 ACGAGCTCGAATGCC
73348960 CAAATATCCT
Statistics
Matches: 160, Mismatches: 9, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
91 1 0.01
92 87 0.54
93 71 0.44
94 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCTAGTTACATCTCT
Found at i:73349117 original size:44 final size:44
Alignment explanation
Indices: 73349054--73349141 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
73349044 ATCTTCTACG
73349054 GAATGCCACTACCGATACTCGATAGTATTTCACATTTTCCAAGT
1 GAATGCCACTACCGATACTCGATAGTATTTCACATTTTCCAAGT
*
73349098 GAATGCCGA-TACCGATACTCGGTAGTATTTCACATTTTCCAAGT
1 GAATGCC-ACTACCGATACTCGATAGTATTTCACATTTTCCAAGT
73349142 ATATCACACA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (44 bp):
GAATGCCACTACCGATACTCGATAGTATTTCACATTTTCCAAGT
Found at i:73357710 original size:28 final size:28
Alignment explanation
Indices: 73357670--73357750 Score: 108
Period size: 28 Copynumber: 2.9 Consensus size: 28
73357660 TGGGAAATAG
*
73357670 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
*
73357698 TTGGGCCTGATGGGCCATGTGAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* * *
73357726 TTTGGCCTAAATGGGCCAAATGAAT
1 TTGGGCCT-GATGGGCCATATGAAT
73357751 AAGTGTGGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 33 0.72
29 13 0.28
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:73358079 original size:27 final size:27
Alignment explanation
Indices: 73358049--73358443 Score: 422
Period size: 27 Copynumber: 14.7 Consensus size: 27
73358039 TAATAAAGAG
*
73358049 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
73358076 AAATTATCGAAGTACCCTCGGTTTATA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358103 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358130 AAATTATTGAAATACCC-CTAATTTGTA
1 AAATTATCGAAATACCCTC-GATTTGTA
* * * *
73358157 AAATTACCAAAATACCCTTGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358183 AAATTA-CTAAAATACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * * *
73358210 AAATTATCAAAATACCCCCAATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358237 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
73358264 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
** * *
73358291 AAATTGCCGAAACACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358318 AAATTTTCGAAATACCATCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358345 AAATTA-CTAAAATACCCTTGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
73358372 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
73358399 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
*
73358426 AAATTACCGAAATACCCT
1 AAATTATCGAAATACCCT
73358444 TGTAGTGTAA
Statistics
Matches: 310, Mismatches: 50, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 24 0.08
27 283 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:73358444 original size:27 final size:27
Alignment explanation
Indices: 73358341--73358483 Score: 137
Period size: 27 Copynumber: 5.3 Consensus size: 27
73358331 ACCATCGATT
** *
73358341 TGTAAAATTACTAAAATACCCTTG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * * *
73358368 TGTAAAATTATCGAAACACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
*
73358395 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
73358422 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* * * *
73358449 TGTAAAATGACCGACATACCCCTATAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
73358476 GGTAAAAT
1 TGTAAAAT
73358484 GACTATTTTG
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 100 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:73358890 original size:11 final size:11
Alignment explanation
Indices: 73358874--73358899 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73358864 ATTGCATGTA
73358874 TGATATTATTG
1 TGATATTATTG
73358885 TGATATTATTG
1 TGATATTATTG
73358896 TGAT
1 TGAT
73358900 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:73365300 original size:47 final size:47
Alignment explanation
Indices: 73365222--73365448 Score: 214
Period size: 47 Copynumber: 4.9 Consensus size: 47
73365212 TGACCATATT
* * * *
73365222 ATGAGAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCATTGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAG
* *
73365270 ATGAGGGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAG
* *
73365316 AAGTA-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAG
1 ATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAG
* * * *
73365362 ATGATAG-TCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAG
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAG
* * * * *
73365409 ATGTGAGCTAGAGTAAGATCGTGTCTAGGACATGGCATCG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
73365449 ACACCTTACT
Statistics
Matches: 149, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 61 0.41
47 62 0.42
48 23 0.15
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (47 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAG
Found at i:73365329 original size:46 final size:47
Alignment explanation
Indices: 73365227--73365448 Score: 195
Period size: 46 Copynumber: 4.7 Consensus size: 47
73365217 ATATTATGAG
* * * *
73365227 AGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATG-A
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-TCGAGATGTA
* * *
73365274 GGGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGAAGTA
1 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CTCGAGATGTA
*
73365321 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATG-A
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCT-CGAGATGTA
* * * * * *
73365366 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAGATGTG
1 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGTA
* * * *
73365414 AGCTAGAGTAAGATCGTGTCTAGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
73365449 ACACCTTACT
Statistics
Matches: 144, Mismatches: 23, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
45 3 0.02
46 62 0.43
47 62 0.43
48 17 0.12
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGTA
Found at i:73374842 original size:49 final size:49
Alignment explanation
Indices: 73374723--73374996 Score: 253
Period size: 49 Copynumber: 5.5 Consensus size: 49
73374713 TAAGAACACA
* * * *
73374723 TGTGTAGTACTATGTGCAGGCTACTATGTGT-CTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAG---TAGGTCACG
* * * *
73374775 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCATATAGTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCACG
* * * * * * * *
73374824 TGTGTAGTACTAATTGCAGGCTACTATGCGTACCCGACAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TA-GTAGGTCACG
* * * *
73374875 TGTGTAGTACTAAGTGCAGCCTATTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TAGGTCACG
* * * *
73374925 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCACG
*
73374974 TGTGCAGTACTAAGTGCAGGCTA
1 TGTGTAGTACTAAGTGCAGGCTA
73374997 TTATACGTAC
Statistics
Matches: 178, Mismatches: 40, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
49 66 0.37
50 44 0.25
51 35 0.20
52 32 0.18
53 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCACG
Found at i:73374958 original size:101 final size:100
Alignment explanation
Indices: 73374770--73374958 Score: 270
Period size: 100 Copynumber: 1.9 Consensus size: 100
73374760 TGGTTTTAGG
* * *
73374770 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCATATAGTAGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGCCTACTACATGTACCAGATAGTAGGTCACATGTGTAGTACT
* *
73374835 AATTGCAGGCTACTATGCGTACCCGACAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
* * * * *
73374870 TCACGTGTGTAGTACTAAGTGCAGCCTATTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGCCTACTACATGTACCAGATAG-TAGGTCACATGTGTAGTAC
*
73374935 TAAGTGCAGGCTACTACGTGTACC
65 TAAGTGCAGGCTACTACGCGTACC
73374959 AGATTGTTGG
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 39 0.51
101 38 0.49
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGCCTACTACATGTACCAGATAGTAGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
Found at i:73374996 original size:150 final size:151
Alignment explanation
Indices: 73374723--73375006 Score: 426
Period size: 150 Copynumber: 1.9 Consensus size: 151
73374713 TAAGAACACA
* * * *
73374723 TGTGTAGTACTATGTGCAGGCTACTATGTGTCTAAGATGGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGCCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTGTAGTACTAA
* * * *
73374788 GTGCAGGCTACTACATGTACCATATAGTAGGTCGCATGTGTAGTACTAATTGCAGGCTACTATGC
65 GTGCAGGCTACTACATGTACCAGATAGTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATAC
73374853 GTACCCGACAACTTCGATCACG
130 GTACCCGACAACTTCGATCACG
* *
73374875 TGTGTAGTACTAAGTGCAGCCTATTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGCCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAG
* * * *
73374939 TGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGCAGTACTAAGTGCAGGCTATTATACG
66 TGCAGGCTACTACATGTACCAGATAGTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATACG
73375004 TAC
131 TAC
73375007 AAAATAGCTT
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
150 84 0.71
152 34 0.29
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGCCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAG
TGCAGGCTACTACATGTACCAGATAGTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATACG
TACCCGACAACTTCGATCACG
Found at i:73375004 original size:101 final size:99
Alignment explanation
Indices: 73374719--73374999 Score: 296
Period size: 101 Copynumber: 2.8 Consensus size: 99
73374709 ATTGTAAGAA
* * *
73374719 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-CTAAGATGGTTTTAGGTCACGTGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGAT--TCTTAGGTCACGTGTGTAGT
* * *
73374783 ACTAAGTGCAGGCTACTACATGTACCATATAGTAGGT
63 ACTAAGTGCAGGCTATTACGTGTACCAGATAGTAGGT
* * * * ** * *
73374820 CGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCGACAACTTCGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TTCTTAGGTCACGTGTGTAGTAC
* * *
73374885 TAAGTGCAGCCTATTACGTGTATCAGATGGTTAGGT
65 TAAGTGCAGGCTATTACGTGTACCAGATAG-TAGGT
* * * * * *
73374921 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCATGTGCAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTCTTAGGTCACGTGTGTAGTACT
73374985 AAGTGCAGGCTATTA
66 AAGTGCAGGCTATTA
73375000 TACGTACAAA
Statistics
Matches: 146, Mismatches: 31, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
99 28 0.19
100 44 0.30
101 73 0.50
102 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (99 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTCTTAGGTCACGTGTGTAGTACT
AAGTGCAGGCTATTACGTGTACCAGATAGTAGGT
Found at i:73375239 original size:16 final size:16
Alignment explanation
Indices: 73375220--73375258 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73375210 AAGAGTGAAA
73375220 TTTGTAATAAAACAGT
1 TTTGTAATAAAACAGT
* * *
73375236 TTTGGACTACAACAGT
1 TTTGTAATAAAACAGT
73375252 TTTGTAA
1 TTTGTAA
73375259 CTTTGAAAAA
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (16 bp):
TTTGTAATAAAACAGT
Found at i:73392794 original size:16 final size:16
Alignment explanation
Indices: 73392744--73392795 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
73392734 GTAGCCAAAC
* *
73392744 TTTCGGCTTTTTGGCA
1 TTTCGACTTTTCGGCA
* *
73392760 TTTTGACTTTTCGACA
1 TTTCGACTTTTCGGCA
*
73392776 TTTCGACTTTTCGGTA
1 TTTCGACTTTTCGGCA
73392792 TTTC
1 TTTC
73392796 AGCTTTTTGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.12, C:0.19, G:0.17, T:0.52
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:73394108 original size:16 final size:17
Alignment explanation
Indices: 73394075--73394113 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
73394065 ACAAAGAAAG
73394075 TTTGGGATTTCAAGATT
1 TTTGGGATTTCAAGATT
* *
73394092 TTTGGG-TTTCGATATT
1 TTTGGGATTTCAAGATT
73394108 TTTGGG
1 TTTGGG
73394114 GCATTATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.15, C:0.05, G:0.28, T:0.51
Consensus pattern (17 bp):
TTTGGGATTTCAAGATT
Found at i:73394955 original size:49 final size:49
Alignment explanation
Indices: 73394844--73395136 Score: 207
Period size: 49 Copynumber: 5.9 Consensus size: 49
73394834 TGTGAGAACA
* * * *** * *
73394844 CATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG---TAGGTCG
* * * *
73394896 CGTGTGTAGTACAAAGTGCAGGCTCCTACGTGTACCATATAGTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCG
* * * * * **
73394945 CATGTGTAGTACTAAGCGCAGGCTACTATGCGTACCCGACA--ACTTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCG
* * * *
73394992 ATCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTTAGGT--
1 --CA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TAGGTCG
* * * *
73395044 CATGTATGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTGGTCG
1 CATG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCG
* *
73395095 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
73395137 CTTCGATTAC
Statistics
Matches: 186, Mismatches: 44, Indels: 25
0.73 0.17 0.10
Matches are distributed among these distances:
47 4 0.02
48 2 0.01
49 77 0.41
50 36 0.19
51 34 0.18
52 31 0.17
54 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTAGGTCG
Found at i:73395116 original size:150 final size:151
Alignment explanation
Indices: 73394846--73395130 Score: 405
Period size: 150 Copynumber: 1.9 Consensus size: 151
73394836 TGAGAACACA
* * * *
73394846 TGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACAAA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTTCAAGATGG-TTTAGGTCACGTATGTAGTACAAA
* *
73394911 GTGCAGGCTCCTACGTGTACCATATAGTAGGTCGCATGTGTAGTACTAAGCGCAGGCTACTATGC
65 GTGCAGGCTACTACGTGTACCAGATAGTAGGTCGCATGTGTAGTACTAAGCGCAGGCTACTATGC
73394976 GTACCCGACAACTTCGATCATG
130 GTACCCGACAACTTCGATCATG
* *
73394998 TGTGTAGTACTAAGTGCAA-GCTACTACGTGTATCAA-ATGG-TTAGGTCATGTATGTAGTACTA
1 TGTGTAGTACTAAGTG-AAGGCTACTACGTGT-TCAAGATGGTTTAGGTCACGTATGTAGTACAA
* * * * *
73395060 AGTGTAGGCTACTACGTGTATCAGATTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
64 AGTGCAGGCTACTACGTGTACCAGATAGTAGGTCGCATGTGTAGTACTAAGCGCAGGCTACTATG
73395125 CGTACC
129 CGTACC
73395131 AGATAGCTTC
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
150 83 0.70
152 30 0.25
153 5 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGAAGGCTACTACGTGTTCAAGATGGTTTAGGTCACGTATGTAGTACAAAG
TGCAGGCTACTACGTGTACCAGATAGTAGGTCGCATGTGTAGTACTAAGCGCAGGCTACTATGCG
TACCCGACAACTTCGATCATG
Found at i:73396922 original size:23 final size:22
Alignment explanation
Indices: 73396902--73396943 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
73396892 TTTAAAACAT
73396902 AAATCA-ATATATAATAAAAAC
1 AAATCACATATATAATAAAAAC
*
73396923 AAATTACATATATAATAAAAA
1 AAATCACATATATAATAAAAA
73396944 ATTATCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATCACATATATAATAAAAAC
Found at i:73398640 original size:24 final size:24
Alignment explanation
Indices: 73398599--73398905 Score: 491
Period size: 24 Copynumber: 12.9 Consensus size: 24
73398589 GCTTTATCAT
*
73398599 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
73398624 GTAACTGAGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
73398648 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73398671 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73398695 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73398719 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73398742 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73398766 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73398790 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73398813 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73398837 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73398861 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73398884 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
73398906 GCACTTCCTC
Statistics
Matches: 264, Mismatches: 11, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
23 93 0.35
24 159 0.60
25 12 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73398699 original size:47 final size:48
Alignment explanation
Indices: 73398599--73398905 Score: 491
Period size: 47 Copynumber: 6.5 Consensus size: 48
73398589 GCTTTATCAT
* * *
73398599 ATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGAGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTTA
*
73398648 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
73398695 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
73398742 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
73398790 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
73398837 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
73398884 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
73398906 GCACTTCCTC
Statistics
Matches: 244, Mismatches: 9, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
47 152 0.62
48 80 0.33
49 12 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:73398701 original size:71 final size:71
Alignment explanation
Indices: 73398599--73398905 Score: 539
Period size: 71 Copynumber: 4.3 Consensus size: 71
73398589 GCTTTATCAT
* *
73398599 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGAGGCA-AAGCCCTTTTTAATAACTGGGGCAT
1 ATAACTGG-GGCATAAGCC-CTTTTGA-TAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCAT
73398661 AAGCCCTTTA
62 AAGCCCTTTA
73398671 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
73398736 CCTTTA
66 CCTTTA
73398742 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
73398807 CCTTTA
66 CCTTTA
73398813 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
73398878 CCTTTA
66 CCTTTA
73398884 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
73398906 GCACTTCCTC
Statistics
Matches: 230, Mismatches: 2, Indels: 7
0.96 0.01 0.03
Matches are distributed among these distances:
71 211 0.92
72 19 0.08
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTA
Found at i:73398977 original size:9 final size:9
Alignment explanation
Indices: 73398963--73399019 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73398953 ATCTCATGTG
73398963 CATATCATA
1 CATATCATA
*
73398972 CATATCATGTG
1 CATATCA--TA
73398983 CATATCATA
1 CATATCATA
* *
73398992 CATGTCATGTG
1 CATATCA--TA
73399003 CATATCATA
1 CATATCATA
73399012 CATATCAT
1 CATATCAT
73399020 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:73398979 original size:20 final size:20
Alignment explanation
Indices: 73398951--73399021 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
73398941 GTATTTATGA
*
73398951 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73398971 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
73398991 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73399011 ACATATCATGT
1 ACATATCATGT
73399022 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:73398986 original size:11 final size:11
Alignment explanation
Indices: 73398956--73399010 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
73398946 TATGAACATC
73398956 TCATGTGCATA
1 TCATGTGCATA
*
73398967 TCA--TACATA
1 TCATGTGCATA
73398976 TCATGTGCATA
1 TCATGTGCATA
* *
73398987 TCA--TACATG
1 TCATGTGCATA
73398996 TCATGTGCATA
1 TCATGTGCATA
73399007 TCAT
1 TCAT
73399011 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73403197 original size:46 final size:46
Alignment explanation
Indices: 73403147--73403322 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
73403137 TGGTTGAGCA
*
73403147 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
73403193 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
73403240 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
73403286 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73403323 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 65 0.60
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:73403303 original size:93 final size:93
Alignment explanation
Indices: 73403144--73403314 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
73403134 GGATGGTTGA
* *
73403144 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
73403209 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
73403237 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
73403302 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73403315 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:73410959 original size:22 final size:21
Alignment explanation
Indices: 73410934--73410975 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
73410924 ACATAAATCA
73410934 ATATATAATAAAAACAAATTAC
1 ATATATAAT-AAAACAAATTAC
*
73410956 ATATATAATATAACAAATTA
1 ATATATAATAAAACAAATTA
73410976 TCAACTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (21 bp):
ATATATAATAAAACAAATTAC
Found at i:73415081 original size:49 final size:49
Alignment explanation
Indices: 73414965--73415195 Score: 213
Period size: 49 Copynumber: 4.8 Consensus size: 49
73414955 GTGTTGAGAC
* * * *
73414965 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATC-AGCCTCGAGATAT
1 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGAT
* *
73415013 GCA-AGCTAGTGTAAGACCTGTCTGGGACATGGCATTGACACT-GATAGAT
1 G-AGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGAT
* * * * *
73415062 GAGAGCCAGTGTAAGACCTGTCTAGGACACGGCCTCGGCCTCGATATAT
1 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGAT
* * * * *
73415111 GAAAGTCAGTTTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-T
1 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGAT
** *
73415158 GCTAGCCACTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCG
73415196 GCATTTTACC
Statistics
Matches: 150, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
47 14 0.09
48 49 0.33
49 84 0.56
50 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (49 bp):
GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGAT
Found at i:73415135 original size:98 final size:95
Alignment explanation
Indices: 73414965--73415197 Score: 270
Period size: 98 Copynumber: 2.4 Consensus size: 95
73414955 GTGTTGAGAC
* * * * *
73414965 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATGCAAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCTGTCTGGGACAGGCATCGGCCTCGAGATATGAAAGCTAGTGTAAGAC
*
73415030 CTGTCTGGGACATGGCATTGACACTGATAGAT
66 CTGTCTGGGACATGGCATCGACACTGAT-G-T
* * * *
73415062 GAGAGCCAGTGTAAGACCTGTCTAGGACACGGCCTCGGCCTCGATATATGAAAG-TCAGTTTAAG
1 GAGAGCCAGTGTAAGACCTGTCTGGGACA-GGCATCGGCCTCGAGATATGAAAGCT-AGTGTAAG
**
73415126 ACCTGTCTGGGACATGGCATCGACTTTGATGT
64 ACCTGTCTGGGACATGGCATCGACACTGATGT
** *
73415158 GCTAGCCACTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGAGCCAGTGTAAGACC-TGTCTGGGACA-GGCATCGGC
73415198 ATTTTACCCT
Statistics
Matches: 115, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
96 16 0.14
97 46 0.40
98 53 0.46
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (95 bp):
GAGAGCCAGTGTAAGACCTGTCTGGGACAGGCATCGGCCTCGAGATATGAAAGCTAGTGTAAGAC
CTGTCTGGGACATGGCATCGACACTGATGT
Found at i:73421037 original size:41 final size:39
Alignment explanation
Indices: 73420985--73421151 Score: 150
Period size: 41 Copynumber: 4.3 Consensus size: 39
73420975 TAGTTAGTTA
* * *
73420985 ACCCCTGAATTGCATATACAATCCCCTGTTTGTACTTCGGT
1 ACCCCTAAATTGCATATAC--GCCCATGTTTGTACTTCGGT
**
73421026 ACCCCTAAATTGCATATACGTGCCCATGTTTGTACTTTAGT
1 ACCCCTAAATTGCATATAC--GCCCATGTTTGTACTTCGGT
*
73421067 ACCCCTAAA-TGC--AT--GCCCATGTTTGTACTTTGGT
1 ACCCCTAAATTGCATATACGCCCATGTTTGTACTTCGGT
* * *
73421101 ACCCCTAAATTGCACATACACGCCCCTATTTGTACTTCGGT
1 ACCCCTAAATTG--CATATACGCCCATGTTTGTACTTCGGT
73421142 --CCCTAAATTG
1 ACCCCTAAATTG
73421152 TACATACGTG
Statistics
Matches: 107, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
34 28 0.26
35 2 0.02
37 1 0.01
38 2 0.02
39 11 0.10
40 3 0.03
41 60 0.56
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (39 bp):
ACCCCTAAATTGCATATACGCCCATGTTTGTACTTCGGT
Found at i:73421089 original size:34 final size:34
Alignment explanation
Indices: 73421046--73421110 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
73421036 TGCATATACG
73421046 TGCCCATGTTTGTACTTTAGTACCCCTAAATGCA
1 TGCCCATGTTTGTACTTTAGTACCCCTAAATGCA
*
73421080 TGCCCATGTTTGTACTTTGGTACCCCTAAAT
1 TGCCCATGTTTGTACTTTAGTACCCCTAAAT
73421111 TGCACATACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (34 bp):
TGCCCATGTTTGTACTTTAGTACCCCTAAATGCA
Found at i:73421176 original size:39 final size:40
Alignment explanation
Indices: 73421092--73421290 Score: 134
Period size: 41 Copynumber: 4.9 Consensus size: 40
73421082 CCCATGTTTG
* ** * *
73421092 TACTTTGGTACCCCTAAATTGCACATACACGCCCCTATTTG
1 TACTTCGGTA-CCCTAAATTGCACATACGTGCCCCTAGTTA
* *
73421133 TACTTCGGT-CCCTAAATTGTACATACGTGCACCTAGTTA
1 TACTTCGGTACCCTAAATTGCACATACGTGCCCCTAGTTA
* * *
73421172 TACTTTGGTACCCCTGAATCGCACATACGTGCCCCT-GTTTA
1 TACTTCGGTA-CCCTAAATTGCACATACGTGCCCCTAG-TTA
* * * * * *
73421213 TACTTTGTTACCCTTGAATTACACATACGTG-CCCTTGTTTG
1 TACTTCGGTACCC-TAAATTGCACATACGTGCCCCTAG-TTA
* * * * *
73421254 TACTTCAGTACCCTTGAATAGCACAAATGTGCCCCTA
1 TACTTCGGTACCC-TAAATTGCACATACGTGCCCCTA
73421291 TTTACACTCC
Statistics
Matches: 128, Mismatches: 24, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
39 32 0.25
40 8 0.06
41 84 0.66
42 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.33
Consensus pattern (40 bp):
TACTTCGGTACCCTAAATTGCACATACGTGCCCCTAGTTA
Found at i:73421198 original size:41 final size:41
Alignment explanation
Indices: 73421092--73421246 Score: 163
Period size: 41 Copynumber: 3.8 Consensus size: 41
73421082 CCCATGTTTG
** * *
73421092 TACTTTGGTACCCCTAAATTGCACATACACGCCCCTATTTG
1 TACTTTGGTACCCCTAAATTGCACATACGTGCCCCTAGTTA
* * *
73421133 TACTTCGGT--CCCTAAATTGTACATACGTGCACCTAGTTA
1 TACTTTGGTACCCCTAAATTGCACATACGTGCCCCTAGTTA
* *
73421172 TACTTTGGTACCCCTGAATCGCACATACGTGCCCCT-GTTTA
1 TACTTTGGTACCCCTAAATTGCACATACGTGCCCCTAG-TTA
* * * *
73421213 TACTTTGTTACCCTTGAATTACACATACGTGCCC
1 TACTTTGGTACCCCTAAATTGCACATACGTGCCC
73421247 TTGTTTGTAC
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 32 0.34
40 1 0.01
41 62 0.65
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (41 bp):
TACTTTGGTACCCCTAAATTGCACATACGTGCCCCTAGTTA
Found at i:73421286 original size:41 final size:40
Alignment explanation
Indices: 73421153--73421294 Score: 135
Period size: 41 Copynumber: 3.5 Consensus size: 40
73421143 CCTAAATTGT
* * * *
73421153 ACATACGTGCACCTAG-TTATACTTTGGTACCCCTGAATCGC
1 ACATACGTGCCCCT-GTTTATAC-TTAGTACCCTTGAATAGC
*
73421194 ACATACGTGCCCCTGTTTATACTTTGTTACCCTTGAATTA-C
1 ACATACGTGCCCCTGTTTATACTTAG-TACCCTTGAA-TAGC
* *
73421235 ACATACGTGCCCTTGTTTGTACTTCAGTACCCTTGAATAGC
1 ACATACGTGCCCCTGTTTATACTT-AGTACCCTTGAATAGC
* * *
73421276 ACAAATGTGCCCCTATTTA
1 ACATACGTGCCCCTGTTTA
73421295 CACTCCGATA
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
40 6 0.07
41 76 0.90
42 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (40 bp):
ACATACGTGCCCCTGTTTATACTTAGTACCCTTGAATAGC
Found at i:73421310 original size:82 final size:82
Alignment explanation
Indices: 73421153--73421313 Score: 180
Period size: 82 Copynumber: 2.0 Consensus size: 82
73421143 CCTAAATTGT
** * * * * *
73421153 ACATACGTGCACCTAGTTATACTTTGGTACCCCTGAATCGCACATACGTGCCCCTGTTTATACTT
1 ACATACGTGCACCTAGTTATACTTCAGTACCCCTGAATAGCACAAACGTGCCCCTATTTACACTC
* *
73421218 TGTTACCCTTGAATTAC
66 CGATACCCTTGAATTAC
* * * *
73421235 ACATACGTGC-CCTTGTTTGTACTTCAGTACCCTTGAATAGCACAAATGTGCCCCTATTTACACT
1 ACATACGTGCACCTAG-TTATACTTCAGTACCCCTGAATAGCACAAACGTGCCCCTATTTACACT
*
73421299 CCGATAGCCTTGAAT
65 CCGATACCCTTGAAT
73421314 CGAGTAAAAT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
81 4 0.06
82 60 0.94
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (82 bp):
ACATACGTGCACCTAGTTATACTTCAGTACCCCTGAATAGCACAAACGTGCCCCTATTTACACTC
CGATACCCTTGAATTAC
Found at i:73422824 original size:14 final size:15
Alignment explanation
Indices: 73422805--73422835 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73422795 GGGTTTTTGT
73422805 AAATAA-AAAAATAA
1 AAATAACAAAAATAA
73422819 AAATAACAAAAATAA
1 AAATAACAAAAATAA
73422834 AA
1 AA
73422836 GGAACTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AAATAACAAAAATAA
Found at i:73425037 original size:16 final size:16
Alignment explanation
Indices: 73425016--73425049 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73425006 CCAAACTTTC
*
73425016 GGCTTTTTGGCATTTT
1 GGCTTTTCGGCATTTT
73425032 GGCTTTTCGGCATTTT
1 GGCTTTTCGGCATTTT
73425048 GG
1 GG
73425050 GATTTGCCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.15, G:0.29, T:0.50
Consensus pattern (16 bp):
GGCTTTTCGGCATTTT
Found at i:73426293 original size:7 final size:7
Alignment explanation
Indices: 73426281--73426306 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
73426271 TTTAATGAAA
73426281 CCCAAAG
1 CCCAAAG
73426288 CCCAAAG
1 CCCAAAG
73426295 CCCAAAG
1 CCCAAAG
73426302 CCCAA
1 CCCAA
73426307 TTCATCTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.46, G:0.12, T:0.00
Consensus pattern (7 bp):
CCCAAAG
Found at i:73427392 original size:349 final size:348
Alignment explanation
Indices: 73426754--73427443 Score: 1281
Period size: 349 Copynumber: 2.0 Consensus size: 348
73426744 GACAAAGTCG
73426754 AGATTACTGTCGCCTCTTGTTGGCATTTCTTCCATTCATTTATCTATTTTGCTCGAAGTTCAATG
1 AGATTACTGTCGCCTCTTGTTGGCATTTCTTCCATTCATTTATCTATTTTGCTCGAAGTTCAATG
* * *
73426819 TATTGTGAAAAAAAGTGTCATCGCTGATACTTCGGGATGGCTTCATTGATTGTTTTGTGGATGCC
66 TATTGTGAAAAAAAGTGTCATCGATGATACTTCGAGATGGATTCATTGATTGTTTTGTGGATGCC
73426884 ATTGGAACACCAACTTTTTTGCATAAAGACGTCAGTAAGTGGGGAAAGAAAACTCCCACTTTTTG
131 ATTGGAACACCAACTTTTTTGCATAAAGACGTCAGTAAGTGGGGAAAGAAAACTCCCACTTTTTG
*
73426949 GCCACTGATGCATCTACGCATATTTTGGTAAATACATTTCCCGATGCATATCTATTTTTTTTGCA
196 GCCACTGATGCATCTACGCATATTTTGGTAAAGACATTTCCCGATGCATATCTATTTTTTTTGCA
*
73427014 AAATAGCATAAAGCAAAATTGCTTAGAAACTATTAACATTAGACACACTCAAAGCAAGAACAACT
261 AAATAGCATAAAGCAAAATTGCTTAGAAACTATTAACATTAGACACACTCAAAGCAAGAACAAAT
73427079 CGTGTGCATAAAAATTCAAAGCA
326 CGTGTGCATAAAAATTCAAAGCA
73427102 AGATTACTGTCGCCTCTTGTTGGCATTTCTTCCATTCATTTATCTATTTTGCTCGAAGTTCAATG
1 AGATTACTGTCGCCTCTTGTTGGCATTTCTTCCATTCATTTATCTATTTTGCTCGAAGTTCAATG
73427167 TATTGTGAAAAAAAAGTGTCATCGATGATACTTCGAGATGGATTCATTGATTGTTTTGTGGATGC
66 TATTGTG-AAAAAAAGTGTCATCGATGATACTTCGAGATGGATTCATTGATTGTTTTGTGGATGC
* *
73427232 CCTTGGAACACCAAGTTTTTTGCATAAAGACGTCAGTAAGTGGGGAAAGAAAACTCCCACTTTTT
130 CATTGGAACACCAACTTTTTTGCATAAAGACGTCAGTAAGTGGGGAAAGAAAACTCCCACTTTTT
*
73427297 GGCCACTGATGCATCTATGCATATTTTGGTAAAGACATTTCCCGATGCATATCTATTTTTTTTGC
195 GGCCACTGATGCATCTACGCATATTTTGGTAAAGACATTTCCCGATGCATATCTATTTTTTTTGC
* *
73427362 AAAATAGCATAAAGCAAAATTGCTTAGAAACTATTAACATTAGACACATTCAATGCAAGAACAAA
260 AAAATAGCATAAAGCAAAATTGCTTAGAAACTATTAACATTAGACACACTCAAAGCAAGAACAAA
73427427 TCGTGTGCATAAAAATT
325 TCGTGTGCATAAAAATT
73427444 GAATCCACAT
Statistics
Matches: 331, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
348 72 0.22
349 259 0.78
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (348 bp):
AGATTACTGTCGCCTCTTGTTGGCATTTCTTCCATTCATTTATCTATTTTGCTCGAAGTTCAATG
TATTGTGAAAAAAAGTGTCATCGATGATACTTCGAGATGGATTCATTGATTGTTTTGTGGATGCC
ATTGGAACACCAACTTTTTTGCATAAAGACGTCAGTAAGTGGGGAAAGAAAACTCCCACTTTTTG
GCCACTGATGCATCTACGCATATTTTGGTAAAGACATTTCCCGATGCATATCTATTTTTTTTGCA
AAATAGCATAAAGCAAAATTGCTTAGAAACTATTAACATTAGACACACTCAAAGCAAGAACAAAT
CGTGTGCATAAAAATTCAAAGCA
Found at i:73432132 original size:27 final size:27
Alignment explanation
Indices: 73432083--73432161 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
73432073 AAGGGTAAAA
* *
73432083 CAGTCATTTTAC-CTTATAGGGGTATGT
1 CAGTCATTTTACAC-TACAAGGGTATGT
* *
73432110 CGGTCATTTTACACTACAAGGGTATTT
1 CAGTCATTTTACACTACAAGGGTATGT
* *
73432137 TAGTAATTTTACACTACAAGGGTAT
1 CAGTCATTTTACACTACAAGGGTAT
73432162 TTTGATAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:73432162 original size:27 final size:27
Alignment explanation
Indices: 73432126--73432361 Score: 182
Period size: 27 Copynumber: 8.7 Consensus size: 27
73432116 TTTTACACTA
*
73432126 CAAGGGTATTTTAGTAATTTTAC-ACT
1 CAAGGGTATTTTAGTAATTTTACAAAT
73432152 ACAAGGGTATTTT-GATAATTTTACAAAAT
1 -CAAGGGTATTTTAG-TAATTTTAC-AAAT
** *
73432181 -GGGGGT-TTTTCGGTAATTTTACAAAT
1 CAAGGGTATTTT-AGTAATTTTACAAAT
* *
73432207 CAAAGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* ** *
73432234 CGAGGGTATTTCGGTAATTTTTCAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
73432261 CAAGGGTATTTCTA-TAATTTTACAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAT
* * * *
73432288 CGAGGGT-GTTTCGATAATTATACAAAT
1 CAAGGGTATTTTAG-TAATTTTACAAAT
* *
73432315 CGCA-GGTA-TTTCGATAATTTTACAAAT
1 C-AAGGGTATTTTAG-TAATTTTACAAAT
* *
73432342 CGAGGGTATTCTAGTAATTT
1 CAAGGGTATTTTAGTAATTT
73432362 CTCTTTATTA
Statistics
Matches: 170, Mismatches: 25, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
25 1 0.01
26 12 0.07
27 147 0.86
28 8 0.05
29 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAT
Found at i:73432240 original size:81 final size:82
Alignment explanation
Indices: 73432130--73432351 Score: 231
Period size: 81 Copynumber: 2.7 Consensus size: 82
73432120 ACACTACAAG
* * * * ** *
73432130 GGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAAAT-GGGGGTTTTTCG
1 GGTATTTCAGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAAATCAAGGGTATTTCG
*
73432193 GTAATTTTACAAATCAAA
65 ATAATTTTACAAATCAAA
* * *
73432211 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTTC-AAATCAAGGGTATTTCTA
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAATCAAGGGTATTTCGA
* *
73432275 TAATTTTACAAATCGAG
66 TAATTTTACAAATCAAA
* * *
73432292 GGTGTTTC-GATAATTATACAAATCGCA-GGTATTTCGATAATTTTAC-AAATCGAGGGTATT
1 GGTATTTCAG-TAATTTTACAAATCG-AGGGTATTTCGATAATTTTACAAAATCAAGGGTATT
73432352 CTAGTAATTT
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
80 5 0.04
81 111 0.93
82 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (82 bp):
GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAATCAAGGGTATTTCGA
TAATTTTACAAATCAAA
Found at i:73432360 original size:54 final size:53
Alignment explanation
Indices: 73432128--73432351 Score: 256
Period size: 54 Copynumber: 4.2 Consensus size: 53
73432118 TTACACTACA
** * *
73432128 AGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAAAT-G
1 AGGGTATTTCGGTAATTTTACAAAT-CAA-GGTATTTCGATAATTTTAC-AAATCG
* *
73432182 GGGGTTTTTCGGTAATTTTACAAATCAAAGGTATTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATC-AAGGTATTTCGA-TAATTTTACAAATCG
* *
73432236 AGGGTATTTCGGTAATTTTTCAAATCAAGGGTATTTCTATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAA-GGTATTTCGATAATTTTACAAATCG
* * * *
73432290 AGGGTGTTTCGATAATTATACAAATCGCAGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATC-AAGGTATTTCGATAATTTTACAAATCG
73432344 AGGGTATT
1 AGGGTATT
73432352 CTAGTAATTT
Statistics
Matches: 147, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
53 7 0.05
54 134 0.91
55 6 0.04
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAATCAAGGTATTTCGATAATTTTACAAATCG
Found at i:73432360 original size:81 final size:81
Alignment explanation
Indices: 73432155--73432361 Score: 235
Period size: 81 Copynumber: 2.6 Consensus size: 81
73432145 TTACACTACA
* * * *
73432155 AGGGTATTTTGATAATTTTACAAAAT-GGGGGT-TTTTCGGTAATTTTACAAATCAAAGGTATTT
1 AGGGTATTTCGATAATTTTAC-AAATCGAGGGTATTCT-AGTAATTTTACAAATCAAAGGTATTT
*
73432218 CAGTAATTTTACAAATCG
64 CAGTAATTATACAAATCG
* * * * * *
73432236 AGGGTATTTCGGTAATTTTTCAAATCAAGGGTATTTCTA-TAATTTTACAAATCGAGGGTGTTTC
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTA-TTCTAGTAATTTTACAAATCAAAGGTATTTC
73432300 -GATAATTATACAAATCG
65 AG-TAATTATACAAATCG
73432317 CA-GGTATTTCGATAATTTTACAAATCGAGGGTATTCTAGTAATTT
1 -AGGGTATTTCGATAATTTTACAAATCGAGGGTATTCTAGTAATTT
73432362 CTCTTTATTA
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
80 10 0.09
81 92 0.87
82 1 0.01
83 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTCTAGTAATTTTACAAATCAAAGGTATTTCA
GTAATTATACAAATCG
Found at i:73446409 original size:14 final size:14
Alignment explanation
Indices: 73446390--73446436 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
73446380 CAGTAAAAAG
73446390 AAGAAAGAAAAGAA
1 AAGAAAGAAAAGAA
*
73446404 AAGAAA-AAAATAAA
1 AAGAAAGAAAA-GAA
*
73446418 AAGAAAGAAAAGGA
1 AAGAAAGAAAAGAA
73446432 AAGAA
1 AAGAA
73446437 GAACATGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 4 0.14
14 20 0.71
15 4 0.14
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (14 bp):
AAGAAAGAAAAGAA
Found at i:73447551 original size:131 final size:131
Alignment explanation
Indices: 73447317--73447578 Score: 515
Period size: 131 Copynumber: 2.0 Consensus size: 131
73447307 GCTCACGAAT
73447317 CACTTTCATAGTGCTCTCAGTTTCAGAAACCAGCTCAGGACCCAATATCTAGCGTTCACTTAATT
1 CACTTTCATAGTGCTCTCAGTTTCAGAAACCAGCTCAGGACCCAATATCTAGCGTTCACTTAATT
73447382 TTGTCCAACATAGAAGAGTACGACACCTACGACCATACAAGACTTCTTAGGGTGCCATCTGAATA
66 TTGTCCAACATAGAAGAGTACGACACCTACGACCATACAAGACTTCTTAGGGTGCCATCTGAATA
73447447 C
131 C
*
73447448 CACTTTCATAGTGCTCTCAGTTTCAGAAACCAGTTCAGGACCCAATATCTAGCGTTCACTTAATT
1 CACTTTCATAGTGCTCTCAGTTTCAGAAACCAGCTCAGGACCCAATATCTAGCGTTCACTTAATT
73447513 TTGTCCAACATAGAAGAGTACGACACCTACGACCATACAAGACTTCTTAGGGTGCCATCTGAATA
66 TTGTCCAACATAGAAGAGTACGACACCTACGACCATACAAGACTTCTTAGGGTGCCATCTGAATA
73447578 C
131 C
73447579 TAGGCTGGAA
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (131 bp):
CACTTTCATAGTGCTCTCAGTTTCAGAAACCAGCTCAGGACCCAATATCTAGCGTTCACTTAATT
TTGTCCAACATAGAAGAGTACGACACCTACGACCATACAAGACTTCTTAGGGTGCCATCTGAATA
C
Found at i:73451184 original size:26 final size:26
Alignment explanation
Indices: 73451155--73451206 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
73451145 TCACTTTCAA
73451155 CTTAACTCAATCATTTTTACAAATCT
1 CTTAACTCAATCATTTTTACAAATCT
73451181 CTTAACTCAATCATTTTTACAAATCT
1 CTTAACTCAATCATTTTTACAAATCT
73451207 AATATACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (26 bp):
CTTAACTCAATCATTTTTACAAATCT
Found at i:73454156 original size:13 final size:13
Alignment explanation
Indices: 73454138--73454166 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73454128 GCCCTTACCA
73454138 TGGGTTACCACTT
1 TGGGTTACCACTT
73454151 TGGGTTACCACTT
1 TGGGTTACCACTT
73454164 TGG
1 TGG
73454167 CTACAGGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.21, G:0.28, T:0.38
Consensus pattern (13 bp):
TGGGTTACCACTT
Found at i:73459101 original size:42 final size:42
Alignment explanation
Indices: 73459031--73459124 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
73459021 GGCCTGGACC
* * *
73459031 CACGAGCATGTCCTAGGCCCTGCGACACCTAC-AGAATGGAGA
1 CACGGGCATGTCCTAGGCCCTGCAACACCCACGAG-ATGGAGA
* * *
73459073 CACGGGCATGTCCTAGGTCGTGTAACACCCACGAGATGGAGA
1 CACGGGCATGTCCTAGGCCCTGCAACACCCACGAGATGGAGA
*
73459115 CAGGGGCATG
1 CACGGGCATG
73459125 CTTGGAACCG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.27, C:0.28, G:0.31, T:0.15
Consensus pattern (42 bp):
CACGGGCATGTCCTAGGCCCTGCAACACCCACGAGATGGAGA
Found at i:73460044 original size:23 final size:22
Alignment explanation
Indices: 73460016--73460093 Score: 74
Period size: 23 Copynumber: 3.6 Consensus size: 22
73460006 ACCAGCCACC
73460016 CTTTTCTTCTCCATTTTTTCTTT
1 CTTTTCTTCTCC-TTTTTTCTTT
* * *
73460039 CTTTTCTTTCCCCTTTCTCCTTT
1 CTTTTC-TTCTCCTTTTTTCTTT
73460062 C-TTTCTCTCTCC--TTTTCTTT
1 CTTTTCT-TCTCCTTTTTTCTTT
73460082 CTTTT-TTCTCCT
1 CTTTTCTTCTCCT
73460094 CTATTCCTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
19 5 0.11
20 8 0.18
21 4 0.09
22 8 0.18
23 15 0.33
24 5 0.11
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTTCTTCTCCTTTTTTCTTT
Found at i:73460074 original size:15 final size:16
Alignment explanation
Indices: 73460054--73460083 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73460044 CTTTCCCCTT
73460054 TCTCC-TTTCTTTCTC
1 TCTCCTTTTCTTTCTC
73460069 TCTCCTTTTCTTTCT
1 TCTCCTTTTCTTTCT
73460084 TTTTTCTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (16 bp):
TCTCCTTTTCTTTCTC
Found at i:73462905 original size:40 final size:40
Alignment explanation
Indices: 73462850--73463122 Score: 537
Period size: 40 Copynumber: 6.8 Consensus size: 40
73462840 CGGATGATAA
73462850 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
*
73462890 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
73462930 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
73462970 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
73463010 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
73463050 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
73463090 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG
73463123 TTAAATCCCG
Statistics
Matches: 231, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 231 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTGATT
Found at i:73463369 original size:40 final size:40
Alignment explanation
Indices: 73463325--73463430 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
73463315 CTGTGAGTTG
* *
73463325 CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
1 CTATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGCGA
* *
73463365 CTATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA
1 CTATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGCGA
73463405 CTATATCTGGGCTAAGACCCGAAGGC
1 CTATATCTGGGCTAAGACCCGAAGGC
73463431 CTTGTGCAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
CTATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGCGA
Found at i:73472629 original size:39 final size:38
Alignment explanation
Indices: 73472586--73472748 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 38
73472576 CAGGATTTAA
* * * *
73472586 CCGGATATAACTACTTGCTCAATGCCTTCGGGACATAGC
1 CCGGATAT-AGTACTCGCACAATGCCTTCGGGACTTAGC
73472625 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTCGCA-CAATGCCTTCGGGACTTAGC
*
73472665 CCGAATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTA-CTCGCAC-AATGCCTTCGGGACTTAGC
*
73472705 CCGGA-ACTAGTCACTAGCGCA-AATGCCTTCAGGACTTAGC
1 CCGGATA-TAGT-ACT--CGCACAATGCCTTCGGGACTTAGC
73472745 CCGG
1 CCGG
73472749 TTATCATCCG
Statistics
Matches: 109, Mismatches: 7, Indels: 15
0.83 0.05 0.11
Matches are distributed among these distances:
38 2 0.02
39 16 0.15
40 86 0.79
41 1 0.01
42 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (38 bp):
CCGGATATAGTACTCGCACAATGCCTTCGGGACTTAGC
Found at i:73472653 original size:40 final size:40
Alignment explanation
Indices: 73472606--73472748 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
73472596 CTACTTGCTC
* *
73472606 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
73472646 AATGCCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
73472686 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
*
73472726 AATGCCTTCAGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
73472749 TTATCATCCG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 91 0.99
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:73476028 original size:40 final size:40
Alignment explanation
Indices: 73475927--73476122 Score: 252
Period size: 40 Copynumber: 4.9 Consensus size: 40
73475917 TATTCGAATG
* *
73475927 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
73475968 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
73476008 ATATCCGGGCTAGGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
73476048 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
73476088 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCTAGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGT
73476123 AGTTATATCT
Statistics
Matches: 132, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 10 0.08
40 93 0.70
41 29 0.22
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:73498864 original size:25 final size:25
Alignment explanation
Indices: 73498835--73498882 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
73498825 TTATAATATG
* *
73498835 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73498860 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73498883 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73498933 original size:9 final size:9
Alignment explanation
Indices: 73498921--73498997 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
73498911 TTTGATAAAC
73498921 ATGATATGT
1 ATGATATGT
*
73498930 ATGATATGCAC
1 ATGATATG--T
73498941 ATGATATGT
1 ATGATATGT
*
73498950 ATGATATGCAG
1 ATGATATG--T
*
73498961 ATGACATGT
1 ATGATATGT
*
73498970 ATGATATGCAC
1 ATGATATG--T
73498981 ATGATATGT
1 ATGATATGT
73498990 ATGATATG
1 ATGATATG
73498998 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73498946 original size:11 final size:11
Alignment explanation
Indices: 73498930--73499001 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
73498920 CATGATATGT
73498930 ATGATATGCAC
1 ATGATATGCAC
*
73498941 ATGATATG--T
1 ATGATATGCAC
*
73498950 ATGATATGCAG
1 ATGATATGCAC
* *
73498961 ATGACATG--T
1 ATGATATGCAC
73498970 ATGATATGCAC
1 ATGATATGCAC
*
73498981 ATGATATG--T
1 ATGATATGCAC
73498990 ATGATATGCAC
1 ATGATATGCAC
73499001 A
1 A
73499002 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73499009 original size:20 final size:20
Alignment explanation
Indices: 73498919--73499001 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
73498909 ATTTTGATAA
73498919 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73498939 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
73498959 AGATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73498979 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73498999 ACA
1 ACA
73499002 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73499081 original size:24 final size:24
Alignment explanation
Indices: 73499054--73499207 Score: 240
Period size: 24 Copynumber: 6.4 Consensus size: 24
73499044 GAGGAAGTGC
*
73499054 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73499078 AAAAGGGCTTATACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73499102 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73499126 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73499150 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73499173 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
73499198 AAAAGAGGCT
1 AAAAG-GGCT
73499208 AGGCCTCTAG
Statistics
Matches: 121, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
23 28 0.23
24 71 0.59
25 13 0.11
26 9 0.07
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73499449 original size:31 final size:31
Alignment explanation
Indices: 73499414--73499477 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73499404 CGTTTACCGT
73499414 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
73499445 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
73499476 AA
1 AA
73499478 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73500478 original size:27 final size:27
Alignment explanation
Indices: 73500436--73500554 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
73500426 TGGATAAGTT
*
73500436 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
73500463 ATAGAATTACCTAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
73500490 GTATAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
73500517 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
73500544 GTAAAATTACC
1 GTAGAATTACC
73500555 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:73500565 original size:54 final size:54
Alignment explanation
Indices: 73500443--73500550 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
73500433 GTTGTAGAAT
*
73500443 TACCGAAATACCCCTATAGGATAGAATTACCTAAATACCCTTGTAGGGTATAAA
1 TACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGGTATAAA
* * * *
73500497 TACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGGTATAAA
73500550 T
1 T
73500551 TACCATTTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 4 0.08
54 45 0.92
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (54 bp):
TACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGGTATAAA
Found at i:73500604 original size:27 final size:27
Alignment explanation
Indices: 73500544--73500609 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
73500534 CCCTTGTGGG
* * *
73500544 GTAAAATTACCATTTTGCCCCTAGGGT
1 GTAAAATAACTATTTTGCCCCTAGGGC
* * * *
73500571 GTTAAATGACTATTTTGCCCCTCGTGC
1 GTAAAATAACTATTTTGCCCCTAGGGC
73500598 GTAAAATAACTA
1 GTAAAATAACTA
73500610 ACTTGTGTGA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (27 bp):
GTAAAATAACTATTTTGCCCCTAGGGC
Done.