Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 225 of 310
Found at i:73868295 original size:47 final size:47
Alignment explanation
Indices: 73868242--73868654 Score: 727
Period size: 47 Copynumber: 8.7 Consensus size: 47
73868232 TTAGGATTCT
73868242 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
73868289 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
73868338 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73868385 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73868432 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73868479 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73868526 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
73868573 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
73868620 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73868655 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 306 0.87
49 46 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73872646 original size:79 final size:81
Alignment explanation
Indices: 73872503--73872685 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
73872493 TACTCGTTCA
* *
73872503 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGA
* *
73872567 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
* *
73872583 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTT-AGTCCG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CG
* *
73872644 GATATGGTCACTTAGCAC
64 GATATAGTAACTTAGCAC
*
73872662 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
73872686 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 5 0.06
79 56 0.63
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGA
TATAGTAACTTAGCAC
Found at i:73872685 original size:40 final size:40
Alignment explanation
Indices: 73872482--73872685 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
73872472 CGGAATTTAA
** *
73872482 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73872522 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
73872562 TCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73872601 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
73872641 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73872681 CCGGA
1 CCGGA
73872686 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73889730 original size:16 final size:16
Alignment explanation
Indices: 73889709--73889739 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
73889699 TAGTTACTTC
73889709 GATATTTTGACCCATG
1 GATATTTTGACCCATG
73889725 GATATTTTGACCCAT
1 GATATTTTGACCCAT
73889740 TGAAATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (16 bp):
GATATTTTGACCCATG
Found at i:73889747 original size:16 final size:16
Alignment explanation
Indices: 73889712--73889747 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
73889702 TTACTTCGAT
*
73889712 ATTTTGACCCATGGAT
1 ATTTTGACCCATGGAA
*
73889728 ATTTTGACCCATTGAA
1 ATTTTGACCCATGGAA
73889744 ATTT
1 ATTT
73889748 GTTTTTGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (16 bp):
ATTTTGACCCATGGAA
Found at i:73890783 original size:45 final size:45
Alignment explanation
Indices: 73890732--73890826 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
73890722 TTCAATGGAT
* *
73890732 ATGTTGGTGTGGAGAGTGCTTAGATTTATGCTACACTTATTAGAC
1 ATGTTGGTGTAGAGAGTGCTTAGATTTATGCTACACTTATGAGAC
*
73890777 ATGTTGGTGTAGAGAGTGCTTAGATTTATGCTACACTTATGGGAC
1 ATGTTGGTGTAGAGAGTGCTTAGATTTATGCTACACTTATGAGAC
73890822 ATGTT
1 ATGTT
73890827 AATAATCTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.38
Consensus pattern (45 bp):
ATGTTGGTGTAGAGAGTGCTTAGATTTATGCTACACTTATGAGAC
Found at i:73899105 original size:27 final size:26
Alignment explanation
Indices: 73899067--73899154 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 26
73899057 ATGGAGGAAG
73899067 TATTCTGGTGGCTCTGCCACAAATATC
1 TATTCTGGTGGCTCTGCCAC-AATATC
*
73899094 TATTCTGGTGGCTCTGCTACAATATC
1 TATTCTGGTGGCTCTGCCACAATATC
* * * *
73899120 TGTATCTGGTGACGCTGTCACAATATC
1 TAT-TCTGGTGGCTCTGCCACAATATC
*
73899147 TGTTCTGG
1 TATTCTGG
73899155 CAACCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 13 0.24
27 41 0.76
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
TATTCTGGTGGCTCTGCCACAATATC
Found at i:73900919 original size:13 final size:13
Alignment explanation
Indices: 73900901--73900925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73900891 ACAAATGATA
73900901 AAATTTTCACACG
1 AAATTTTCACACG
73900914 AAATTTTCACAC
1 AAATTTTCACAC
73900926 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:73902997 original size:40 final size:39
Alignment explanation
Indices: 73902960--73903051 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
73902950 GCTACTCGTT
*
73902960 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
73903000 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
73903039 CAAATGCCTTCGG
1 CAAATGCCTTCGG
73903052 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:73903031 original size:39 final size:40
Alignment explanation
Indices: 73902941--73903104 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
73902931 CGGAATTTAA
** *
73902941 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
73902981 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73903020 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
73903060 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73903100 CCGGA
1 CCGGA
73903105 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73905447 original size:32 final size:32
Alignment explanation
Indices: 73905406--73905468 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
73905396 CAAAATGACC
*
73905406 AATTCTATTAGCCATTCATGAACACATTATAT
1 AATTCTATTAGACATTCATGAACACATTATAT
73905438 AATTCTATTAGACATTCATGAACACATTATA
1 AATTCTATTAGACATTCATGAACACATTATA
73905469 GTGACCATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (32 bp):
AATTCTATTAGACATTCATGAACACATTATAT
Found at i:73906119 original size:43 final size:41
Alignment explanation
Indices: 73906053--73906171 Score: 132
Period size: 41 Copynumber: 2.8 Consensus size: 41
73906043 AGCTCATACA
*
73906053 ATGCCAAC-ATCCCAGACGTGGTCTTATATGTAATCAAATATCG
1 ATGCC-ACTATCCCAGACATGGTCTTA-ATGTAATCAAATAT-G
* ***
73906096 ATGCCACTATCCCAGACAAGGTCTTAAAAAAATCAAATATG
1 ATGCCACTATCCCAGACATGGTCTTAATGTAATCAAATATG
* *
73906137 ATGCCAATATCTCAGACATGGTCTTACATGTAATC
1 ATGCCACTATCCCAGACATGGTCTTA-ATGTAATC
73906172 TCAAATCGAT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 24 0.38
42 18 0.29
43 21 0.33
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (41 bp):
ATGCCACTATCCCAGACATGGTCTTAATGTAATCAAATATG
Found at i:73906203 original size:84 final size:85
Alignment explanation
Indices: 73906053--73906220 Score: 187
Period size: 84 Copynumber: 2.0 Consensus size: 85
73906043 AGCTCATACA
* * *
73906053 ATGCCAACATCCCAGACGTGGTCTTATATGTAATCAAATATCGATGCCACTATCCCAGACAAGGT
1 ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAAGGT
73906118 CTTA-AAAAAATCAAATATG
66 CTTACAAAAAATCAAATATG
* * * * * * ***
73906137 ATGCCAATATCTCAGACATGGTCTTACATGTAATCTCAA-ATCGATGCTAATGTCCTAGAGGTGG
1 ATGCCAACATCCCAGACATGGTCTTACATGTAATC-AAATATCGATGCCAATATCCCAGACAAGG
* *
73906201 TCTTACACAAAATCACATAT
65 TCTTACAAAAAATCAAATAT
73906221 CGAAAATCCT
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
84 54 0.79
85 14 0.21
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (85 bp):
ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAAGGT
CTTACAAAAAATCAAATATG
Found at i:73908525 original size:26 final size:26
Alignment explanation
Indices: 73908459--73908569 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
73908449 AGGAAGCGTC
*
73908459 CTGGTGGCTAC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGTT
*
73908486 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
73908513 C-GGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
73908540 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
73908566 CTGG
1 CTGG
73908570 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 27 0.38
27 33 0.46
28 12 0.17
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:73908562 original size:53 final size:53
Alignment explanation
Indices: 73908461--73908566 Score: 135
Period size: 53 Copynumber: 2.0 Consensus size: 53
73908451 GAAGCGTCCT
*
73908461 GGTGGCTACGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTTC
1 GGTGGCTACGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTC
* * * *
73908514 GGTGGCT-CTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTTC
1 GGTGGCTAC-GCCACAATTATCT-GATCTAGTGACTCTGCCACATATATCTGTTC
73908567 TGGCAGCCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 28 0.61
54 17 0.37
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (53 bp):
GGTGGCTACGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTC
Found at i:73910645 original size:93 final size:93
Alignment explanation
Indices: 73910533--73910703 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
73910523 GCCCATAAGT
* *
73910533 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73910598 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
73910626 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73910691 CGAGTTCGGATGC
66 CGAGCTCGGATGC
73910704 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73910700 original size:46 final size:46
Alignment explanation
Indices: 73910525--73910700 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
73910515 TGTAACCCGC
* *
73910525 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
73910571 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
73910617 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
73910664 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73910701 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:73913136 original size:30 final size:30
Alignment explanation
Indices: 73913092--73913180 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
73913082 CAAAGATAAC
73913092 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
73913121 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
73913151 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
73913181 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:73913140 original size:15 final size:15
Alignment explanation
Indices: 73913092--73913171 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
73913082 CAAAGATAAC
*
73913092 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73913106 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
73913121 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
73913136 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73913151 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73913166 AAGAAA
1 AAGAAA
73913172 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73913180 original size:15 final size:15
Alignment explanation
Indices: 73913103--73913180 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
73913093 AGAAAACCGA
73913103 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
73913118 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
73913132 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
73913147 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73913163 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73913178 ATA
1 ATA
73913181 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:73916221 original size:93 final size:93
Alignment explanation
Indices: 73916109--73916280 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73916099 GCCCATAAGT
* *
73916109 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73916174 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
73916202 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73916267 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73916281 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:73916276 original size:46 final size:46
Alignment explanation
Indices: 73916101--73916276 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
73916091 TGTAACCCGC
* * *
73916101 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73916147 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
73916193 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
73916240 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73916277 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73922594 original size:16 final size:16
Alignment explanation
Indices: 73922573--73922603 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73922563 GAATTCTCTA
73922573 CTCATCTCTTCTTTTG
1 CTCATCTCTTCTTTTG
*
73922589 CTCATCTTTTCTTTT
1 CTCATCTCTTCTTTT
73922604 TCTTTTAGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.29, G:0.03, T:0.61
Consensus pattern (16 bp):
CTCATCTCTTCTTTTG
Found at i:73923355 original size:8 final size:8
Alignment explanation
Indices: 73923342--73923371 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
73923332 CTAGATCGGC
73923342 AAAAGCCG
1 AAAAGCCG
73923350 AAAAGCCG
1 AAAAGCCG
*
73923358 AAATGCCG
1 AAAAGCCG
73923366 AAAAGC
1 AAAAGC
73923372 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:73923829 original size:27 final size:27
Alignment explanation
Indices: 73923788--73923926 Score: 133
Period size: 27 Copynumber: 5.1 Consensus size: 27
73923778 AGGAAGCGTC
73923788 CTGGTGGCTAC-GCCACA-ATTATCTGAT
1 CTGGTGGCT-CTGCCACATA-TATCTGAT
* *
73923815 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
73923842 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
73923869 CTGGTGGCTCTGCCACGAT-TATTTGTAT
1 CTGGTGGCTCTGCCAC-ATATATCTG-AT
* * * *
73923897 CTGGTGACTCTGTCATAT-TATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
73923923 CTGG
1 CTGG
73923927 CAGCCATGCT
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.06
27 73 0.76
28 17 0.18
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:73923876 original size:54 final size:54
Alignment explanation
Indices: 73923800--73923926 Score: 150
Period size: 54 Copynumber: 2.3 Consensus size: 54
73923790 GGTGGCTACG
* * *
73923800 CCACAATTATCTGATCTAGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGGCTCTA
1 CCAC-ATTATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACTCTA
* *
73923854 CCACATATATCTGTTCTGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTG
1 CCACAT-TATCTGTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTA
* *
73923909 TCATATTATCTGTTCTGG
1 CCACATTATCTGTTCTGG
73923927 CAGCCATGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
53 2 0.03
54 44 0.70
55 17 0.27
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.39
Consensus pattern (54 bp):
CCACATTATCTGTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTA
Found at i:73928303 original size:45 final size:45
Alignment explanation
Indices: 73928239--73928458 Score: 279
Period size: 45 Copynumber: 5.0 Consensus size: 45
73928229 TATCGTACGG
* *
73928239 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
73928284 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73928329 TACTATTCAGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTTG-GA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG-TGAGA
* * * *
73928374 TACTATTCGGGCCTTCGAGCCTAGCAGCCTATAATGCCGGTAAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
73928419 TGA-TA-TCGAG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
73928459 TGAATTCGGG
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
42 10 0.06
43 17 0.11
44 5 0.03
45 121 0.78
46 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:73932134 original size:31 final size:31
Alignment explanation
Indices: 73932098--73932156 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
73932088 TAAATTCAAA
* *
73932098 TGTATATGTTTTAAATATTACTGAATTGGTG
1 TGTATATATTTGAAATATTACTGAATTGGTG
* *
73932129 TGTATATATTTGACATATTGCTGAATTG
1 TGTATATATTTGAAATATTACTGAATTG
73932157 ATATAAGCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.47
Consensus pattern (31 bp):
TGTATATATTTGAAATATTACTGAATTGGTG
Found at i:73932324 original size:41 final size:42
Alignment explanation
Indices: 73932278--73932385 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 42
73932268 TTCCGATGTG
* * * *
73932278 TGATTCATGTAAGACCATGTTTGGGACATTGGCATTG-TATA
1 TGATTCATGTAAGACCATGTCTGGGACAATAGCATCGATATA
* * * *
73932319 TGATTCGTATAAGACCTTGTCTGGGACAATAGCATCGATATG
1 TGATTCATGTAAGACCATGTCTGGGACAATAGCATCGATATA
* *
73932361 TGATCGCATGTAAGACCATATCTGG
1 TGAT-TCATGTAAGACCATGTCTGG
73932386 CATATAGCAA
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 30 0.58
42 7 0.13
43 15 0.29
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTCATGTAAGACCATGTCTGGGACAATAGCATCGATATA
Found at i:73937632 original size:23 final size:23
Alignment explanation
Indices: 73937602--73937655 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
73937592 CATAATCATT
73937602 ACATCAATCTATTTTAAGATCTA
1 ACATCAATCTATTTTAAGATCTA
*
73937625 ACATCAATCTATTTTCAGATCTA
1 ACATCAATCTATTTTAAGATCTA
73937648 ACATCAAT
1 ACATCAAT
73937656 AAATCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (23 bp):
ACATCAATCTATTTTAAGATCTA
Found at i:73945805 original size:40 final size:40
Alignment explanation
Indices: 73945750--73945826 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
73945740 AACCAAAATT
73945750 TATAAAACAGAGTAACAAAAACACACAGAGTAAGCTATTC
1 TATAAAACAGAGTAACAAAAACACACAGAGTAAGCTATTC
* * *
73945790 TATAAAATAGAGTAACAAAAACACATAGGGTAAGCTA
1 TATAAAACAGAGTAACAAAAACACACAGAGTAAGCTA
73945827 ACTTAGCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.18
Consensus pattern (40 bp):
TATAAAACAGAGTAACAAAAACACACAGAGTAAGCTATTC
Found at i:73951402 original size:27 final size:26
Alignment explanation
Indices: 73951354--73951405 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73951344 GCGAGGCTGT
*
73951354 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
73951380 CAGATATATGTGATGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
73951406 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73952106 original size:27 final size:26
Alignment explanation
Indices: 73952058--73952147 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 26
73952048 GGCAAAATGG
* * *
73952058 TAATTTTACCCTACAAAGGTATCTT-GG
1 TAATTCTACCCTAC-AGGGTAT-TTCGA
*
73952085 TAATTCTACCCTACAGGTGTATTTCAA
1 TAATTCTACCCTACAGG-GTATTTCGA
*
73952112 TAATTCTACCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACA-GGGTATTTCGA
73952139 TAATTCTAC
1 TAATTCTAC
73952148 AACTTATCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGTATTTCGA
Found at i:73955612 original size:47 final size:47
Alignment explanation
Indices: 73955541--73955982 Score: 769
Period size: 47 Copynumber: 9.4 Consensus size: 47
73955531 TATCACAGTT
* * * * *
73955541 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
* *
73955588 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
* *
73955635 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
73955682 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
73955729 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
73955776 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
73955823 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
73955870 ATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
73955917 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
73955964 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
73955983 GTAACAAAAT
Statistics
Matches: 382, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 380 0.99
48 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:73955629 original size:22 final size:22
Alignment explanation
Indices: 73955604--73955726 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
73955594 TTTCACATTC
73955604 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
73955626 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
73955650 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* ** * * *
73955673 ATCATATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
73955697 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
73955720 ATCACAT
1 ATCACAT
73955727 ACATACACTT
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 28 0.41
23 10 0.14
24 10 0.14
25 21 0.30
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:73955883 original size:16 final size:17
Alignment explanation
Indices: 73955858--73955930 Score: 50
Period size: 16 Copynumber: 4.6 Consensus size: 17
73955848 GCCATTCGGC
73955858 CTTATCACATACATACA
1 CTTATCACATACATACA
*
73955875 CTT-TCACATTCAT-CA
1 CTTATCACATACATACA
** * *
73955890 CATTGGC-CATTCA-GC-
1 C-TTATCACATACATACA
73955905 CTTATCACATACATACA
1 CTTATCACATACATACA
73955922 CTT-TCACAT
1 CTTATCACAT
73955931 TCATCACATT
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
14 3 0.07
15 9 0.20
16 25 0.57
17 7 0.16
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.33
Consensus pattern (17 bp):
CTTATCACATACATACA
Found at i:73959784 original size:40 final size:40
Alignment explanation
Indices: 73959729--73960045 Score: 528
Period size: 40 Copynumber: 8.0 Consensus size: 40
73959719 ATTTTGTCCA
* *
73959729 AGCACGAATGC-CTTCGGGGCTTAGCCTGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
73959768 AGCACGAGTGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
73959808 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACCTCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
73959848 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
73959888 AGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
73959928 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
73959968 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
73960008 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
73960046 NNNNNNNNNN
Statistics
Matches: 264, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 10 0.04
40 254 0.96
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:73969988 original size:89 final size:89
Alignment explanation
Indices: 73969855--73970116 Score: 411
Period size: 89 Copynumber: 3.0 Consensus size: 89
73969845 TGAATTCATC
* * **
73969855 CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCGATATCATTTCACTAGCATTATAGCCTGCTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTA
73969918 GGCTCAAAGGCCCGAATAGTATCT
66 GGCTCAAAGGCCCGAATAGTATCT
*
73969942 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGATATCATTTCACCGGCATTATAGCCTGCTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTA
* * *
73970007 GGCTCGAATGCCCAAATAGTATCT
66 GGCTCAAAGGCCCGAATAGTATCT
* *
73970031 CACCGGCATCATAGCCTACTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTA
*
73970096 GGCTCAAAGGCCCGATTAGTA
66 GGCTCAAAGGCCCGAATAGTA
73970117 CCGTACGATA
Statistics
Matches: 158, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 10 0.06
88 16 0.10
89 132 0.84
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (89 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTA
GGCTCAAAGGCCCGAATAGTATCT
Found at i:73970004 original size:44 final size:44
Alignment explanation
Indices: 73969855--73970111 Score: 342
Period size: 44 Copynumber: 5.8 Consensus size: 44
73969845 TGAATTCATC
* *
73969855 CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCGATATCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTT
** *
73969897 CACTAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG-ATA-TCATTT
*
73969942 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGATATCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTT
* * * *
73969986 CACCGGCATTATAGCCTGCTAGGCTCGAATGCCCAAATAGT-ATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-GATA-TCATTT
* *
73970031 CACCGGCATCATAGCCTACTAGGCTCAAAGGCCCGATATCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTT
73970075 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAT
73970112 TAGTACCGTA
Statistics
Matches: 185, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
42 8 0.04
43 18 0.10
44 83 0.45
45 74 0.40
46 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (44 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTT
Found at i:73971686 original size:134 final size:134
Alignment explanation
Indices: 73971530--73971798 Score: 511
Period size: 134 Copynumber: 2.0 Consensus size: 134
73971520 TCAATTTTCA
73971530 AAATTTAAACTTATAAACTTACAATCACATGGATTTTAACATTATAGTCCATCAAACTTTCATTC
1 AAATTTAAACTTATAAACTTACAATCACATGGATTTTAACATTATAGTCCATCAAACTTTCATTC
*
73971595 ATCAATTTCTATCATCAAATACAAAATTTTTGCAATTTCCTATCATGACCGAATGCACAATTGAC
66 ATCAATTTCTATCATCAAATACAAAATTTTTGCAATTTCCTATCATGACCGAATGCAAAATTGAC
73971660 CAAC
131 CAAC
73971664 AAATTTAAACTTATAAACTTACAATCACATGGATTTTAACATTATAGTCCATCAAACTTTCATTC
1 AAATTTAAACTTATAAACTTACAATCACATGGATTTTAACATTATAGTCCATCAAACTTTCATTC
* *
73971729 ATCAATTTCTATCATCCAATACAAATTTTTTGCAATTTCCTATCATGACCGAATGCAAAATTGAC
66 ATCAATTTCTATCATCAAATACAAAATTTTTGCAATTTCCTATCATGACCGAATGCAAAATTGAC
73971794 CAAC
131 CAAC
73971798 A
1 A
73971799 TTTAACAAAT
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 132 1.00
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.35
Consensus pattern (134 bp):
AAATTTAAACTTATAAACTTACAATCACATGGATTTTAACATTATAGTCCATCAAACTTTCATTC
ATCAATTTCTATCATCAAATACAAAATTTTTGCAATTTCCTATCATGACCGAATGCAAAATTGAC
CAAC
Found at i:73991222 original size:43 final size:43
Alignment explanation
Indices: 73991158--73991373 Score: 256
Period size: 43 Copynumber: 5.0 Consensus size: 43
73991148 ATATGTGATT
* *
73991158 TCGATATGTGATTATGTGTAAGACCACGTCTAGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * *
73991201 TCCATATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * * *
73991244 TTGATATGTGATTACGTGTAAAACCACATCTGGGACATCGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * *
73991287 TCGATTTGTGATTACGTGTAAGACC-CTATTTGGGACAG-TGACA
1 TCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
* *
73991330 TCGATATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
73991373 T
1 T
73991374 TGTACGATAT
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
42 2 0.01
43 143 0.99
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:73991373 original size:86 final size:86
Alignment explanation
Indices: 73991158--73991373 Score: 288
Period size: 86 Copynumber: 2.5 Consensus size: 86
73991148 ATATGTGATT
* *
73991158 TCGATATGTGATTATGTGTAAGACCACGTCTAGGACGTTGGCATCCATATGTGATTACGTGTAAG
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATATGTGATTACGTGTAAG
* * *
73991223 ACCATGTCTGGGACATTGGCA
66 ACCATATCTGGGACAGTGACA
* * * * * * *
73991244 TTGATATGTGATTACGTGTAAAACCACATCTGGGACATCGGCATCGATTTGTGATTACGTGTAAG
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATATGTGATTACGTGTAAG
* *
73991309 ACCCTATTTGGGACAGTGACA
66 ACCATATCTGGGACAGTGACA
* *
73991330 TCGATATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
73991374 TGTACGATAT
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
86 109 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (86 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATATGTGATTACGTGTAAG
ACCATATCTGGGACAGTGACA
Found at i:73994531 original size:40 final size:40
Alignment explanation
Indices: 73994303--73994525 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 40
73994293 TGGATGATAA
* * * *
73994303 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
73994343 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*** *
73994383 CCAACCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73994423 CCGAGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** * * * *
73994463 CCGGGCTATTTCCCAAAGGCATTCGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
73994503 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
73994526 CGAGCTGTAA
Statistics
Matches: 160, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 157 0.98
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74012877 original size:29 final size:29
Alignment explanation
Indices: 74012835--74012968 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
74012825 AGCATGTATT
74012835 TGAATGTGATTTGGGCCTAATGAGCCATA
1 TGAATGTGATTTGGGCCTAATGAGCCATA
74012864 TGAATGTGATTTGGGCCTAATGAGCCATA
1 TGAATGTGATTTGGGCCTAATGAGCCATA
* *
74012893 TGAATGTGATTTGGGCCTAATGGGCGATA
1 TGAATGTGATTTGGGCCTAATGAGCCATA
* *
74012922 CGAATGTGATTTGGGCCTAATGGGCCATA
1 TGAATGTGATTTGGGCCTAATGAGCCATA
*
74012951 TGAATGAGA-TTGGGCCTA
1 TGAATGTGATTTGGGCCTA
74012969 GTAGGCCATA
Statistics
Matches: 99, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 9 0.09
29 90 0.91
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
TGAATGTGATTTGGGCCTAATGAGCCATA
Found at i:74017868 original size:27 final size:27
Alignment explanation
Indices: 74017838--74017941 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
74017828 ATTACCAAAG
*
74017838 TACCCCCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
74017865 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
74017892 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
74017919 TACCATTGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
74017942 AAAATACCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:74017949 original size:27 final size:27
Alignment explanation
Indices: 74017865--74018224 Score: 112
Period size: 27 Copynumber: 13.3 Consensus size: 27
74017855 ATTACTGTTT
* * * ***
74017865 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
74017892 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
74017919 TACCATTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
74017946 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * * * * *
74017973 TATCC-TCAATCAGTAAAATTACCAAAA
1 TACCCTTGATTTA-CAAAATTACTAAAA
* * ** *
74018000 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
74018026 TACCAC-TGGTTTGTAAAATTACCAAAA
1 TACC-CTTGATTTACAAAATTACTAAAA
* ** * *
74018053 TACCCCT-AGTTTGTAAAGTTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
* *** **
74018080 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTACAAAATTACTAAAA
* **
74018107 CACCCTCAATTT-CTAAAATTAAC-AAAA
1 TACCCTTGATTTAC-AAAATT-ACTAAAA
*
74018134 TATCCC-TAATTTACAAAATTAC-AGAAA
1 TA-CCCTTGATTTACAAAATTACTA-AAA
74018161 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
74018190 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
74018217 TACCCTTG
1 TACCCTTG
74018225 GTTTGTAGAT
Statistics
Matches: 264, Mismatches: 50, Indels: 38
0.75 0.14 0.11
Matches are distributed among these distances:
26 27 0.10
27 203 0.77
28 14 0.05
29 20 0.08
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:74017951 original size:54 final size:54
Alignment explanation
Indices: 74017825--74017967 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 54
74017815 CTCGACTTGT
* * ** * *
74017825 AAAATTACCAAAGTACCCCCGATTTACAGAATTACTGTTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTTGATTTACAGAATTACTGTTTTACCATCGATTTAC
* *** *
74017879 AGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCATTGATTTAC
1 AAAATTACTAAAATACCCTTGATTTACAGAATTACTGTTTTACCATCGATTTAC
* *
74017933 AAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 AAAATTACTAAAATACCCTTGATTTACAGAATTAC
74017968 CAAAATATCC
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTACAGAATTACTGTTTTACCATCGATTTAC
Found at i:74018036 original size:80 final size:81
Alignment explanation
Indices: 74017933--74018101 Score: 209
Period size: 80 Copynumber: 2.1 Consensus size: 81
74017923 ATTGATTTAC
*
74017933 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-TCCTCAATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-AATCAGTAAAATTACCA
74017997 AAATACC-CTGGTCTGT
65 AAATACCACTGGTCTGT
* ** * ** *
74018013 AAAATTGCTAAAATACCAC-TGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCA
1 AAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCCTAATCAGTAAAATTACCA
*
74018077 AAATACCACTGGTTTGT
65 AAATACCACTGGTCTGT
*
74018094 GAAATTAC
1 AAAATTAC
74018102 CGAAACACCC
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
80 57 0.76
81 18 0.24
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:74018042 original size:53 final size:53
Alignment explanation
Indices: 74017985--74018135 Score: 176
Period size: 54 Copynumber: 2.8 Consensus size: 53
74017975 TCCTCAATCA
* * *
74017985 GTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCACTGGTTT
1 GTAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAAATACCACTGGTTT
* *
74018038 GTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAATACCACTGGTTT
1 GTAAAATTACCAAAATA-CCCTAGTCTGTAAAATTACCAAAATACCACTGGTTT
* * * * * * *
74018092 GTGAAATTACCGAAACACCCTCAATTTCTAAAATTAACAAAATA
1 GTAAAATTACCAAAATACCCT-AGTCTGTAAAATTACCAAAATA
74018136 TCCCTAATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 21 0.25
54 63 0.75
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (53 bp):
GTAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAAATACCACTGGTTT
Found at i:74018312 original size:27 final size:27
Alignment explanation
Indices: 74018269--74018342 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
74018259 AAATGACTAA
*
74018269 AATACCCCTATTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
74018296 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
74018323 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
74018343 TGACAATATG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:74018346 original size:27 final size:27
Alignment explanation
Indices: 74018282--74018346 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
74018272 ACCCCTATTA
*
74018282 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
74018309 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
74018336 GGTAAAATGAC
1 GGTAAAATGAC
74018347 AATATGCCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:74023406 original size:42 final size:42
Alignment explanation
Indices: 74023355--74023508 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 42
74023345 ACTGAGACTA
* * *
74023355 TGTGTAAGACCATGTTTGGGATATGGCATCAATATGAGATTT
1 TGTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTT
* * *
74023397 TGTGTAAGACAATATCTAGGATATTGCATCGATATGAGATTT
1 TGTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTT
* * * * *
74023439 TGTGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGATTA
1 TGTGTAAGACCATATCTAGGATA-TGGCATCAATATGAGATTT
** *
74023482 CATGTAAGACCATATCTAGGAGATGGC
1 TGTGTAAGACCATATCTAGGATATGGC
74023509 TTGGTATGGT
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 60 0.64
43 34 0.36
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTT
Found at i:74028178 original size:13 final size:14
Alignment explanation
Indices: 74028160--74028189 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
74028150 ATTTCTACTT
74028160 ATCCCTCATCA-TC
1 ATCCCTCATCATTC
74028173 ATCCCTCATCATTC
1 ATCCCTCATCATTC
74028187 ATC
1 ATC
74028190 ATTCTCTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.23, C:0.43, G:0.00, T:0.33
Consensus pattern (14 bp):
ATCCCTCATCATTC
Found at i:74032585 original size:42 final size:42
Alignment explanation
Indices: 74032537--74032688 Score: 155
Period size: 42 Copynumber: 3.6 Consensus size: 42
74032527 ACTAAGACTA
*
74032537 CGTGTAAGACCATATCTGAGATATGGCCTTAG-TATGAGATTT
1 CGTGTAAGACCATATCTGAGATATGG-CATAGATATGAGATTT
* * * *
74032579 TGTGTAAGACCATATCTGGGATATGGCATCGATGTGAGATTT
1 CGTGTAAGACCATATCTGAGATATGGCATAGATATGAGATTT
* * * *
74032621 CGTGTAAGACCATAGCT-AGGCTATTGGCATCGATATGAGATTA
1 CGTGTAAGACCATATCTGA-GATA-TGGCATAGATATGAGATTT
* * *
74032664 CATGTAAGATCATATCTGGGATATG
1 CGTGTAAGACCATATCTGAGATATG
74032689 ACATTGGTAT
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 3 0.03
42 53 0.59
43 34 0.38
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGAGATATGGCATAGATATGAGATTT
Found at i:74041013 original size:50 final size:50
Alignment explanation
Indices: 74040954--74041092 Score: 226
Period size: 50 Copynumber: 2.8 Consensus size: 50
74040944 TTATGTGTTC
74040954 ATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGACT
1 ATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA-T
74041005 -TGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGAT
1 ATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGAT
* * *
74041054 ATCCATTATGTAACTCCCATGTTAGTTAAGGTTTGCATC
1 ATGCATTATGTAACTCTCATGTTAGTTAA-GTATGCATC
74041093 TTTAAATTAA
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
49 1 0.01
50 74 0.89
51 8 0.10
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (50 bp):
ATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGAT
Found at i:74042765 original size:26 final size:26
Alignment explanation
Indices: 74042736--74042843 Score: 78
Period size: 25 Copynumber: 4.2 Consensus size: 26
74042726 AAGGGCGGTT
*
74042736 CTTAATAAAGTGCCATAAAGGCGTTC
1 CTTAATAAAGTGCCATAAAAGCGTTC
** * *
74042762 CTT-ATGGAGTTTGCCATAAAAACATTC
1 CTTAATAAAG--TGCCATAAAAGCGTTC
* * * *
74042789 TTTAATATTA-TGCCACAAAAGC-TTT
1 CTTAATA-AAGTGCCATAAAAGCGTTC
*
74042814 CTTAATAAAGTGCCATAAAGGCGTTC
1 CTTAATAAAGTGCCATAAAAGCGTTC
74042840 CTTA
1 CTTA
74042844 TGGAGTTTGC
Statistics
Matches: 60, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
24 1 0.02
25 22 0.37
26 19 0.32
27 15 0.25
28 2 0.03
29 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (26 bp):
CTTAATAAAGTGCCATAAAAGCGTTC
Found at i:74042818 original size:25 final size:25
Alignment explanation
Indices: 74042790--74042894 Score: 72
Period size: 25 Copynumber: 4.1 Consensus size: 25
74042780 AAAACATTCT
74042790 TTAATATTATGCCACAAAAGCTTTC
1 TTAATATTATGCCACAAAAGCTTTC
* * * *
74042815 TTAATA-AAGTGCCATAAAGGCGTTCC
1 TTAATATTA-TGCCACAAAAGC-TTTC
* *
74042841 TT-ATGGAGTT-TGCCACAAAAACATTC
1 TTAAT--A-TTATGCCACAAAAGCTTTC
*
74042867 TTTAATATTACGCCACAAAAGCTTTC
1 -TTAATATTATGCCACAAAAGCTTTC
74042893 TT
1 TT
74042895 TCAAATTACG
Statistics
Matches: 58, Mismatches: 13, Indels: 18
0.65 0.15 0.20
Matches are distributed among these distances:
24 1 0.02
25 22 0.38
26 21 0.36
27 12 0.21
28 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (25 bp):
TTAATATTATGCCACAAAAGCTTTC
Found at i:74042823 original size:78 final size:78
Alignment explanation
Indices: 74042734--74042894 Score: 304
Period size: 78 Copynumber: 2.1 Consensus size: 78
74042724 ACAAGGGCGG
*
74042734 TTCTTAATAAAGTGCCATAAAGGCGTTCCTTATGGAGTTTGCCATAAAAACATTCTTTAATATTA
1 TTCTTAATAAAGTGCCATAAAGGCGTTCCTTATGGAGTTTGCCACAAAAACATTCTTTAATATTA
*
74042799 TGCCACAAAAGCT
66 CGCCACAAAAGCT
74042812 TTCTTAATAAAGTGCCATAAAGGCGTTCCTTATGGAGTTTGCCACAAAAACATTCTTTAATATTA
1 TTCTTAATAAAGTGCCATAAAGGCGTTCCTTATGGAGTTTGCCACAAAAACATTCTTTAATATTA
74042877 CGCCACAAAAGCT
66 CGCCACAAAAGCT
74042890 TTCTT
1 TTCTT
74042895 TCAAATTACG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.34
Consensus pattern (78 bp):
TTCTTAATAAAGTGCCATAAAGGCGTTCCTTATGGAGTTTGCCACAAAAACATTCTTTAATATTA
CGCCACAAAAGCT
Found at i:74042893 original size:26 final size:25
Alignment explanation
Indices: 74042852--74042922 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
74042842 TATGGAGTTT
* *
74042852 GCCACAAAAACATTCTTTAATATTAC
1 GCCACAAAAGCTTTCTTTAA-ATTAC
74042878 GCCACAAAAGCTTTCTTTCAAATTAC
1 GCCACAAAAGCTTTCTTT-AAATTAC
*
74042904 GCCA-AAAAGGCTTACTTTA
1 GCCACAAAA-GCTTTCTTTA
74042923 TCTATTGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
25 5 0.12
26 33 0.82
27 2 0.05
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (25 bp):
GCCACAAAAGCTTTCTTTAAATTAC
Found at i:74046447 original size:30 final size:30
Alignment explanation
Indices: 74046413--74046473 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74046403 TCCTTAACTC
74046413 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74046443 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74046473 A
1 A
74046474 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74047887 original size:28 final size:28
Alignment explanation
Indices: 74047855--74047914 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
74047845 ACACCAATAT
* *
74047855 TTATCAATAATGATATGAATTTCCTTAC
1 TTATCAACAATGATACGAATTTCCTTAC
*
74047883 TTATCAACAATGATACGAATTTTCTTAC
1 TTATCAACAATGATACGAATTTCCTTAC
74047911 TTAT
1 TTAT
74047915 TCTTCGAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (28 bp):
TTATCAACAATGATACGAATTTCCTTAC
Found at i:74054357 original size:26 final size:26
Alignment explanation
Indices: 74054295--74054357 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
74054285 GGAGTTTTCT
* *
74054295 ACAAAGGCATTCTTTCGTATTACGCC
1 ACAAAGGCTTTCTTTCATATTACGCC
* *
74054321 ACAAAGACTTTCTTTCATATTGCGCC
1 ACAAAGGCTTTCTTTCATATTACGCC
74054347 ACAAAGGCTTT
1 ACAAAGGCTTT
74054358 TGTTATCTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (26 bp):
ACAAAGGCTTTCTTTCATATTACGCC
Found at i:74060327 original size:27 final size:27
Alignment explanation
Indices: 74060251--74060350 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
74060241 TATATCACAT
* *
74060251 AGGGACAAAATAGTCAATTTACCATGTA
1 AGGG-CAAAATAGTCATTTTACCATATA
**
74060279 AGGGC-ATTTCAGT-ATTTTACCATATA
1 AGGGCAAAAT-AGTCATTTTACCATATA
*
74060305 AGGGCAAAATAGTCATTTTACCACATA
1 AGGGCAAAATAGTCATTTTACCATATA
74060332 AGGGCAAAATTA-TCATTTT
1 AGGGCAAAA-TAGTCATTTT
74060351 CATCAATCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
26 21 0.34
27 34 0.56
28 6 0.10
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (27 bp):
AGGGCAAAATAGTCATTTTACCATATA
Found at i:74075509 original size:41 final size:41
Alignment explanation
Indices: 74075464--74075610 Score: 213
Period size: 41 Copynumber: 3.6 Consensus size: 41
74075454 CAATGATATT
*
74075464 CAGGCTTTATGTCGGTGAATTATATCAGGCTTATTGGCTAG
1 CAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGGCTAG
*
74075505 CAGGCTTTATGCCGGTGAATTATATTAGGCTTATTGGCTAG
1 CAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGGCTAG
* * * *
74075546 CAGGCTTTATGCCGGTGTATTATTTCAGGCCTATTGCCTAG
1 CAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGGCTAG
* * *
74075587 CAGGCTCTGTGCCGGTGTATTATA
1 CAGGCTTTATGCCGGTGAATTATA
74075611 CTAGGATTTA
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.36
Consensus pattern (41 bp):
CAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGGCTAG
Found at i:74075625 original size:41 final size:41
Alignment explanation
Indices: 74075464--74075629 Score: 201
Period size: 41 Copynumber: 4.0 Consensus size: 41
74075454 CAATGATATT
* * * *
74075464 CAGGCTTTATGTCGGTGAATTATATCAGGCTTATTGGCTAG
1 CAGGCTTTATGCCGGTGTATTATATTAGGCTTATTGCCTAG
* *
74075505 CAGGCTTTATGCCGGTGAATTATATTAGGCTTATTGGCTAG
1 CAGGCTTTATGCCGGTGTATTATATTAGGCTTATTGCCTAG
*
74075546 CAGGCTTTATGCCGGTGTATTAT-TTCAGGCCTATTGCCTAG
1 CAGGCTTTATGCCGGTGTATTATATT-AGGCTTATTGCCTAG
* * * *
74075587 CAGGCTCTGTGCCGGTGTATTATACTAGGATT-TATGCCTAG
1 CAGGCTTTATGCCGGTGTATTATATTAGGCTTAT-TGCCTAG
74075628 CA
1 CA
74075630 AATTTTATGT
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
40 3 0.03
41 108 0.96
42 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (41 bp):
CAGGCTTTATGCCGGTGTATTATATTAGGCTTATTGCCTAG
Found at i:74091012 original size:926 final size:926
Alignment explanation
Indices: 74089221--74091072 Score: 3704
Period size: 926 Copynumber: 2.0 Consensus size: 926
74089211 CCACAAATCG
74089221 TTGCCACTGTCCCAGACAGGGTCTTACTTGTAAACACATATCGTAATCACATATCGATGCCATGG
1 TTGCCACTGTCCCAGACAGGGTCTTACTTGTAAACACATATCGTAATCACATATCGATGCCATGG
74089286 TCTTACTCGTACATATATATCGAAATCCTATGTCATGACATATGTATCCTAACTATTCCTAAGGT
66 TCTTACTCGTACATATATATCGAAATCCTATGTCATGACATATGTATCCTAACTATTCCTAAGGT
74089351 TCATACAGGGCTTTTGGACGTTGTATCTTGGTCGAATCATATTCGTAAACATAGTTCCCAAACAT
131 TCATACAGGGCTTTTGGACGTTGTATCTTGGTCGAATCATATTCGTAAACATAGTTCCCAAACAT
74089416 TTTCACATTCGGCTATTACTTATACAAATTCATAAAATTCAAAATCAGCATTATACATTCACATA
196 TTTCACATTCGGCTATTACTTATACAAATTCATAAAATTCAAAATCAGCATTATACATTCACATA
74089481 TATTTAAAATTTGTGACATTTATTTGCTTATAAACTTACCTCAAACGTCATAAAATGGGACAGGG
261 TATTTAAAATTTGTGACATTTATTTGCTTATAAACTTACCTCAAACGTCATAAAATGGGACAGGG
74089546 TTTCTAGTCGACAACTTTCGTTTTTCCCCGGTCCAAATCGGATTTCTTTGGTTCTTGATCTAAAC
326 TTTCTAGTCGACAACTTTCGTTTTTCCCCGGTCCAAATCGGATTTCTTTGGTTCTTGATCTAAAC
74089611 ATATTCAAATTAAGCTCATTCAAACATATTTTCATTCAATTTAGTCTAAAAACACATAAATGGGC
391 ATATTCAAATTAAGCTCATTCAAACATATTTTCATTCAATTTAGTCTAAAAACACATAAATGGGC
74089676 AAATTACCATTTTACCCCTGACATTTACAATTTTTACAATTTAGTCCCTGTTACACAAAACACAA
456 AAATTACCATTTTACCCCTGACATTTACAATTTTTACAATTTAGTCCCTGTTACACAAAACACAA
74089741 AATATGCAAAATTTTCCTATACCCATGTTTGGCCAAATCTTACCTATTGCAATAAAAGTCCATAT
521 AATATGCAAAATTTTCCTATACCCATGTTTGGCCAAATCTTACCTATTGCAATAAAAGTCCATAT
74089806 ATTTCATCAATTTCATATTTTAGTCTCTCAAATTATTATTTTTTTCAATTAAGTCCTAATTACTC
586 ATTTCATCAATTTCATATTTTAGTCTCTCAAATTATTATTTTTTTCAATTAAGTCCTAATTACTC
74089871 AAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACATATCTTTCATTTTCCGTCATC
651 AAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACATATCTTTCATTTTCCGTCATC
74089936 AAACAACAAAAATCACAAGCTATCAACAATGGCACAACTCAAAATATTCATCAAAATCGAAAATT
716 AAACAACAAAAATCACAAGCTATCAACAATGGCACAACTCAAAATATTCATCAAAATCGAAAATT
74090001 CAAGCATGGGTTTTGTAGTACACGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAACCGAA
781 CAAGCATGGGTTTTGTAGTACACGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAACCGAA
74090066 CAAAAAATGAACCTTGATTGAGCTTGAATGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGT
846 CAAAAAATGAACCTTGATTGAGCTTGAATGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGT
74090131 TTCGGGACTGCTAAAC
911 TTCGGGACTGCTAAAC
74090147 TTGCCACTGTCCCAGACAGGGTCTTACTTGTAAACACATATCGTAATCACATATCGATGCCATGG
1 TTGCCACTGTCCCAGACAGGGTCTTACTTGTAAACACATATCGTAATCACATATCGATGCCATGG
74090212 TCTTACTCGTACATATATATCGAAATCCTATGTCATGACATATGTATCCTAACTATTCCTAAGGT
66 TCTTACTCGTACATATATATCGAAATCCTATGTCATGACATATGTATCCTAACTATTCCTAAGGT
74090277 TCATACAGGGCTTTTGGACGTTGTATCTTGGTCGAATCATATTCGTAAACATAGTTCCCAAACAT
131 TCATACAGGGCTTTTGGACGTTGTATCTTGGTCGAATCATATTCGTAAACATAGTTCCCAAACAT
74090342 TTTCACATTCGGCTATTACTTATACAAATTCATAAAATTCAAAATCAGCATTATACATTCACATA
196 TTTCACATTCGGCTATTACTTATACAAATTCATAAAATTCAAAATCAGCATTATACATTCACATA
74090407 TATTTAAAATTTGTGACATTTATTTGCTTATAAACTTACCTCAAACGTCATAAAATGGGACAGGG
261 TATTTAAAATTTGTGACATTTATTTGCTTATAAACTTACCTCAAACGTCATAAAATGGGACAGGG
74090472 TTTCTAGTCGACAACTTTCGTTTTTCCCCGGTCCAAATCGGATTTCTTTGGTTCTTGATCTAAAC
326 TTTCTAGTCGACAACTTTCGTTTTTCCCCGGTCCAAATCGGATTTCTTTGGTTCTTGATCTAAAC
74090537 ATATTCAAATTAAGCTCATTCAAACATATTTTCATTCAATTTAGTCTAAAAACACATAAATGGGC
391 ATATTCAAATTAAGCTCATTCAAACATATTTTCATTCAATTTAGTCTAAAAACACATAAATGGGC
74090602 AAATTACCATTTTACCCCTGACATTTACAATTTTTACAATTTAGTCCCTGTTACACAAAACACAA
456 AAATTACCATTTTACCCCTGACATTTACAATTTTTACAATTTAGTCCCTGTTACACAAAACACAA
74090667 AATATGCAAAATTTTCCTATACCCATGTTTGGCCAAATCTTACCTATTGCAATAAAAGTCCATAT
521 AATATGCAAAATTTTCCTATACCCATGTTTGGCCAAATCTTACCTATTGCAATAAAAGTCCATAT
74090732 ATTTCATCAATTTCATATTTTAGTCTCTCAAATTATTATTTTTTTCAATTAAGTCCTAATTACTC
586 ATTTCATCAATTTCATATTTTAGTCTCTCAAATTATTATTTTTTTCAATTAAGTCCTAATTACTC
74090797 AAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACATATCTTTCATTTTCCGTCATC
651 AAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACATATCTTTCATTTTCCGTCATC
74090862 AAACAACAAAAATCACAAGCTATCAACAATGGCACAACTCAAAATATTCATCAAAATCGAAAATT
716 AAACAACAAAAATCACAAGCTATCAACAATGGCACAACTCAAAATATTCATCAAAATCGAAAATT
74090927 CAAGCATGGGTTTTGTAGTACACGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAACCGAA
781 CAAGCATGGGTTTTGTAGTACACGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAACCGAA
74090992 CAAAAAATGAACCTTGATTGAGCTTGAATGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGT
846 CAAAAAATGAACCTTGATTGAGCTTGAATGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGT
74091057 TTCGGGACTGCTAAAC
911 TTCGGGACTGCTAAAC
74091073 CGAGTCACCG
Statistics
Matches: 926, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
926 926 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (926 bp):
TTGCCACTGTCCCAGACAGGGTCTTACTTGTAAACACATATCGTAATCACATATCGATGCCATGG
TCTTACTCGTACATATATATCGAAATCCTATGTCATGACATATGTATCCTAACTATTCCTAAGGT
TCATACAGGGCTTTTGGACGTTGTATCTTGGTCGAATCATATTCGTAAACATAGTTCCCAAACAT
TTTCACATTCGGCTATTACTTATACAAATTCATAAAATTCAAAATCAGCATTATACATTCACATA
TATTTAAAATTTGTGACATTTATTTGCTTATAAACTTACCTCAAACGTCATAAAATGGGACAGGG
TTTCTAGTCGACAACTTTCGTTTTTCCCCGGTCCAAATCGGATTTCTTTGGTTCTTGATCTAAAC
ATATTCAAATTAAGCTCATTCAAACATATTTTCATTCAATTTAGTCTAAAAACACATAAATGGGC
AAATTACCATTTTACCCCTGACATTTACAATTTTTACAATTTAGTCCCTGTTACACAAAACACAA
AATATGCAAAATTTTCCTATACCCATGTTTGGCCAAATCTTACCTATTGCAATAAAAGTCCATAT
ATTTCATCAATTTCATATTTTAGTCTCTCAAATTATTATTTTTTTCAATTAAGTCCTAATTACTC
AAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACATATCTTTCATTTTCCGTCATC
AAACAACAAAAATCACAAGCTATCAACAATGGCACAACTCAAAATATTCATCAAAATCGAAAATT
CAAGCATGGGTTTTGTAGTACACGAAGCAACGATCTCAAAAACGTAGAAATTATCAAAAACCGAA
CAAAAAATGAACCTTGATTGAGCTTGAATGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGT
TTCGGGACTGCTAAAC
Found at i:74099243 original size:26 final size:26
Alignment explanation
Indices: 74099214--74099323 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
74099204 TGGTACAAAT
74099214 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
74099240 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
74099266 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
74099292 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
74099318 TGATAA
1 TGATAA
74099324 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:74113262 original size:5 final size:5
Alignment explanation
Indices: 74113254--74113280 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
74113244 TTAGATTTTA
74113254 TTTGT TTTGT TTTGT TTTGT TTTGT TT
1 TTTGT TTTGT TTTGT TTTGT TTTGT TT
74113281 ATTATTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTGT
Found at i:74116736 original size:40 final size:40
Alignment explanation
Indices: 74116675--74116887 Score: 342
Period size: 40 Copynumber: 5.4 Consensus size: 40
74116665 CTAATTCCAA
* *
74116675 GCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
74116714 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
*
74116754 GCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
74116794 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
*
74116834 GCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGG
* *
74116873 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
74116888 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 22 0.13
40 143 0.87
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
Found at i:74121124 original size:28 final size:27
Alignment explanation
Indices: 74121087--74121240 Score: 100
Period size: 28 Copynumber: 5.4 Consensus size: 27
74121077 AACAATCGAT
74121087 CTCGCACACACAGTGCTCGGTTACAAAA
1 CTCGCACACACAGTGCTC-GTTACAAAA
* * *
74121115 CTCGCACACATAGTGC-C-TCAACAATCGAT
1 CTCGCACACACAGTGCTCGT-TACAA---AA
*
74121144 CTCGCACACACAGTGCTCAGTTACGAAA
1 CTCGCACACACAGTGCTC-GTTACAAAA
* *
74121172 CTCGCACACACAGTGC-C-TCAACAACCGAT
1 CTCGCACACACAGTGCTCGT-TACAA---AA
* **
74121201 CTCGGACACACAGTGCTCAGTTACGGAA
1 CTCGCACACACAGTGCTC-GTTACAAAA
74121229 CTCGCACACACA
1 CTCGCACACACA
74121241 ATGCCTATGT
Statistics
Matches: 96, Mismatches: 16, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
25 2 0.02
26 7 0.07
27 2 0.02
28 44 0.46
29 32 0.33
30 2 0.02
31 5 0.05
32 2 0.02
ACGTcount: A:0.31, C:0.35, G:0.17, T:0.17
Consensus pattern (27 bp):
CTCGCACACACAGTGCTCGTTACAAAA
Found at i:74121152 original size:29 final size:28
Alignment explanation
Indices: 74121060--74121216 Score: 124
Period size: 29 Copynumber: 5.4 Consensus size: 28
74121050 GATCTCATTT
*
74121060 CACACACTTAGTGCCCCAACAATCGATCTCG
1 CACACAC--AGTGCCTCAACAA-CGATCTCG
* *
74121091 CACACACAGTG-CTCGGTTACAA--AACTCG
1 CACACACAGTGCCTC---AACAACGATCTCG
*
74121119 CACACATAGTGCCTCAACAATCGATCTCG
1 CACACACAGTGCCTCAACAA-CGATCTCG
*** *
74121148 CACACACAGTG-CTCAGTTACGAAACTCG
1 CACACACAGTGCCTCAACAACG-ATCTCG
74121176 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAA-CGATCTCG
*
74121205 GACACACAGTGC
1 CACACACAGTGC
74121217 TCAGTTACGG
Statistics
Matches: 100, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
26 4 0.04
27 2 0.02
28 38 0.38
29 43 0.43
30 2 0.02
31 11 0.11
ACGTcount: A:0.31, C:0.36, G:0.16, T:0.17
Consensus pattern (28 bp):
CACACACAGTGCCTCAACAACGATCTCG
Found at i:74121239 original size:57 final size:57
Alignment explanation
Indices: 74121060--74121246 Score: 284
Period size: 57 Copynumber: 3.2 Consensus size: 57
74121050 GATCTCATTT
* * *
74121060 CACACACTTAGTGCCCCAACAATCGATCTCGCACACACAGTGCTCGGTTACAAAACTCG
1 CACACAC--AGTGCCTCAACAATCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
*
74121119 CACACATAGTGCCTCAACAATCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
1 CACACACAGTGCCTCAACAATCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
* * *
74121176 CACACACAGTGCCTCAACAACCGATCTCGGACACACAGTGCTCAGTTACGGAACTCG
1 CACACACAGTGCCTCAACAATCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
*
74121233 CACACACAATGCCT
1 CACACACAGTGCCT
74121247 ATGTTCACTT
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
57 113 0.95
59 6 0.05
ACGTcount: A:0.31, C:0.35, G:0.16, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAATCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
Found at i:74123508 original size:39 final size:39
Alignment explanation
Indices: 74123464--74123579 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
74123454 ATTATATTAT
* *
74123464 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
74123503 CAGCACGAAGCCCGCGGCACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
74123542 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74123580 TCAGTGTCTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.25, C:0.32, G:0.23, T:0.20
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:74125655 original size:121 final size:121
Alignment explanation
Indices: 74125441--74125681 Score: 464
Period size: 121 Copynumber: 2.0 Consensus size: 121
74125431 TCCTCTATGA
*
74125441 TGCTATTCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTTTTATGGTTTATTAATTG
1 TGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTTTTATGGTTTATTAATTG
74125506 AGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATCAATTTTTTTT
66 AGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATCAATTTTTTTT
74125562 TGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTTTTATGGTTTATTAATTG
1 TGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTTTTATGGTTTATTAATTG
*
74125627 AGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATTAATTTTTTT
66 AGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATCAATTTTTTT
74125682 ATTTTAATTT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.44
Consensus pattern (121 bp):
TGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTTTTATGGTTTATTAATTG
AGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATCAATTTTTTTT
Found at i:74130225 original size:18 final size:19
Alignment explanation
Indices: 74130202--74130238 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
74130192 AAGGGGCGAC
*
74130202 AAAAGTGTAG-AAAGGAAG
1 AAAAGTGGAGCAAAGGAAG
74130220 AAAAGTGGAGCAAAGGAAG
1 AAAAGTGGAGCAAAGGAAG
74130239 TCAAACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.54, C:0.03, G:0.35, T:0.08
Consensus pattern (19 bp):
AAAAGTGGAGCAAAGGAAG
Found at i:74133585 original size:20 final size:20
Alignment explanation
Indices: 74133547--74133585 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
74133537 TATCAAAGTT
*
74133547 CAAAAAAAAAATCCTAAAAC
1 CAAAAAAAAAATCCAAAAAC
* *
74133567 CAAAAATAATATCCAAAAA
1 CAAAAAAAAAATCCAAAAA
74133586 AATTTAATAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.18, G:0.00, T:0.13
Consensus pattern (20 bp):
CAAAAAAAAAATCCAAAAAC
Found at i:74140557 original size:27 final size:27
Alignment explanation
Indices: 74140527--74140580 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
74140517 TTACATGTCG
*
74140527 TCACAGATCGATGCCATTATCCTAGAC
1 TCACAGATCGATGCCACTATCCTAGAC
* *
74140554 TCACAGATTGATGCCACTGTCCTAGAC
1 TCACAGATCGATGCCACTATCCTAGAC
74140581 AAGGTCTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (27 bp):
TCACAGATCGATGCCACTATCCTAGAC
Found at i:74140659 original size:43 final size:42
Alignment explanation
Indices: 74140563--74140677 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
74140553 CTCACAGATT
* * * *
74140563 GATGCCACTGTCCTAGACAAGGTCTTACACAAAATCATATAA
1 GATGCCAATGTCCTAAACATGGTCTTACACAAAATCAAATAA
* * * *
74140605 TGATGCTAATGTCCTACACATGGTTTTACACAGAATCACAATACA
1 -GATGCCAATGTCCTAAACATGGTCTTACACAAAATCA-AATA-A
*
74140650 -ATGCCAATGTCCCAAACATGGTCTTACA
1 GATGCCAATGTCCTAAACATGGTCTTACA
74140678 TGTAATCACA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 55 0.93
44 3 0.05
45 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (42 bp):
GATGCCAATGTCCTAAACATGGTCTTACACAAAATCAAATAA
Found at i:74146869 original size:22 final size:22
Alignment explanation
Indices: 74146826--74146873 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
74146816 CCTGAGATGA
*
74146826 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATCGAGC
74146848 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
74146870 TGAA
1 TGAA
74146874 ATGGTAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:74146914 original size:24 final size:23
Alignment explanation
Indices: 74146831--74146915 Score: 68
Period size: 23 Copynumber: 3.7 Consensus size: 23
74146821 GATGATGAAC
* *
74146831 AGTAAGCTC-TATTGAGCTG-AAC
1 AGTAAGCTCATA-TGAGATGAAAT
* *
74146853 AGTAAGCTCATACGAGCTGAAAT
1 AGTAAGCTCATATGAGATGAAAT
*
74146876 GGTAAGCTCCA-ATGAGATGAAAAT
1 AGTAAGCT-CATATGAGATG-AAAT
*
74146900 AGTAAGCTCTTATGAG
1 AGTAAGCTCATATGAG
74146916 CTAATATATC
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 15 0.29
23 18 0.35
24 18 0.35
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCATATGAGATGAAAT
Found at i:74160463 original size:22 final size:21
Alignment explanation
Indices: 74160414--74160453 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
74160404 TTCATTTAAC
74160414 TAATATTTCTAAATTAAATTA
1 TAATATTTCTAAATTAAATTA
74160435 TATATATTT-TAAATTAAAT
1 TA-ATATTTCTAAATTAAAT
74160454 CTTGTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (21 bp):
TAATATTTCTAAATTAAATTA
Found at i:74171807 original size:40 final size:40
Alignment explanation
Indices: 74171748--74171837 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
74171738 NNNNNNNNNN
* * * *
74171748 ACCCGAAGGCATTTGTGCTAGCGACTATATCCGTGCTAAG
1 ACCCGAAGGCATTTATGCTAGCGACCACATCCGGGCTAAG
* *
74171788 TCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAG
1 ACCCGAAGGCATTTATGCTAGCGACCACATCCGGGCTAAG
74171828 ACCCGAAGGC
1 ACCCGAAGGC
74171838 CTTGTGCAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (40 bp):
ACCCGAAGGCATTTATGCTAGCGACCACATCCGGGCTAAG
Found at i:74173615 original size:19 final size:19
Alignment explanation
Indices: 74173579--74173617 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
74173569 TGTAGTTCAA
74173579 ACCAATAAAAAATTTTATT
1 ACCAATAAAAAATTTTATT
*
74173598 ACCAA-AAAATATTATTATT
1 ACCAATAAAAAATT-TTATT
74173617 A
1 A
74173618 ATATGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (19 bp):
ACCAATAAAAAATTTTATT
Found at i:74173655 original size:25 final size:27
Alignment explanation
Indices: 74173607--74173662 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
74173597 TACCAAAAAA
74173607 TATTATTATTAATATGATTTTATCTAC
1 TATTATTATTAATATGATTTTATCTAC
* *
74173634 TATTTTTA-TAATAT-ATTTTATCTAT
1 TATTATTATTAATATGATTTTATCTAC
74173659 TATT
1 TATT
74173663 CTTAAGGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 14 0.52
26 6 0.22
27 7 0.26
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
TATTATTATTAATATGATTTTATCTAC
Found at i:74174116 original size:13 final size:13
Alignment explanation
Indices: 74174098--74174122 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74174088 AATTAACTCT
74174098 AATATTAATTAAA
1 AATATTAATTAAA
74174111 AATATTAATTAA
1 AATATTAATTAA
74174123 GTGATAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATATTAATTAAA
Found at i:74181592 original size:22 final size:22
Alignment explanation
Indices: 74181567--74181611 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
74181557 AAATAAAGAA
*
74181567 TATTCTTATTAATTTAAAAAAC
1 TATTCTCATTAATTTAAAAAAC
*
74181589 TATTCTCGTTAATTTAAAAAAC
1 TATTCTCATTAATTTAAAAAAC
74181611 T
1 T
74181612 TGTATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.44
Consensus pattern (22 bp):
TATTCTCATTAATTTAAAAAAC
Found at i:74189131 original size:79 final size:82
Alignment explanation
Indices: 74189020--74189204 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
74189010 GCTACTCGTT
* *
74189020 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74189083 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
74189100 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
74189163 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
74189180 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74189205 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:74189204 original size:40 final size:40
Alignment explanation
Indices: 74189001--74189204 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
74188991 CGGAATTTAA
** *
74189001 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74189041 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
74189081 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74189120 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
74189160 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
74189200 CCGGA
1 CCGGA
74189205 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74197072 original size:79 final size:78
Alignment explanation
Indices: 74196970--74197192 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
74196960 GCTCCTCGTT
* *
74196970 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
74197035 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
74197050 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
74197114 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
74197128 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
74197191 GA
63 GA
74197193 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:74197087 original size:39 final size:40
Alignment explanation
Indices: 74196970--74197192 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
74196960 GCTCCTCGTT
* *
74196970 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
74197010 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
74197050 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
74197089 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
74197128 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
74197169 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74197193 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:74204252 original size:7 final size:7
Alignment explanation
Indices: 74204240--74204301 Score: 124
Period size: 7 Copynumber: 8.9 Consensus size: 7
74204230 AAGTAAAATT
74204240 TTTATCA
1 TTTATCA
74204247 TTTATCA
1 TTTATCA
74204254 TTTATCA
1 TTTATCA
74204261 TTTATCA
1 TTTATCA
74204268 TTTATCA
1 TTTATCA
74204275 TTTATCA
1 TTTATCA
74204282 TTTATCA
1 TTTATCA
74204289 TTTATCA
1 TTTATCA
74204296 TTTATC
1 TTTATC
74204302 GAGCTTTAAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 55 1.00
ACGTcount: A:0.27, C:0.15, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTATCA
Found at i:74211381 original size:16 final size:17
Alignment explanation
Indices: 74211350--74211385 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
74211340 CCCAACATGA
74211350 GTATTTTGAAATTTTGT
1 GTATTTTGAAATTTTGT
*
74211367 GTATTTTG-TATTTTGT
1 GTATTTTGAAATTTTGT
74211383 GTA
1 GTA
74211386 ATAATGACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.61
Consensus pattern (17 bp):
GTATTTTGAAATTTTGT
Found at i:74231174 original size:28 final size:28
Alignment explanation
Indices: 74231142--74231198 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
74231132 ATGCCATGAG
74231142 TTAGATTCTATTTCATTTAATTTGTACA
1 TTAGATTCTATTTCATTTAATTTGTACA
74231170 TTAGATTCTATTTCATTTAATTTGTACA
1 TTAGATTCTATTTCATTTAATTTGTACA
74231198 T
1 T
74231199 ATTTTGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.11, G:0.07, T:0.54
Consensus pattern (28 bp):
TTAGATTCTATTTCATTTAATTTGTACA
Found at i:74234146 original size:48 final size:48
Alignment explanation
Indices: 74234104--74234277 Score: 240
Period size: 48 Copynumber: 3.6 Consensus size: 48
74234094 CATATTAGTG
* ** *
74234104 CCGATGCCATTTCCCAGACATGGTCTTACACTATCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACA
** *
74234152 TTGATGCCATGTCCCAGACATGATCTTACACTGGCTCACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACA
* * * *
74234200 CTGATGCCATGTCCCAGACATGGCCTTACACTGGCTTACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACA
*
74234248 CCGATTCCATGTCCCAGACATGGTCTTACA
1 CCGATGCCATGTCCCAGACATGGTCTTACA
74234278 TGAGATCTCA
Statistics
Matches: 111, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACA
Found at i:74234589 original size:48 final size:48
Alignment explanation
Indices: 74234477--74234611 Score: 126
Period size: 48 Copynumber: 2.8 Consensus size: 48
74234467 ACTTACACAT
* * * * *
74234477 ATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACATAGGATCTC
1 ATATCGATACTAATGCCATGTCCCAGACATGGTCTTATATAGGACCTC
* * * * *
74234525 GTATCGGTGCTGATGCCATGTCCCAGACATGGTCTTATATGGGACCTC
1 ATATCGATACTAATGCCATGTCCCAGACATGGTCTTATATAGGACCTC
* * * * * *
74234573 ATCTTGATACTAATGCCATATGCCTGATATGGTCTTATA
1 ATATCGATACTAATGCCATGTCCCAGACATGGTCTTATA
74234612 CGGGGTCCCA
Statistics
Matches: 69, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (48 bp):
ATATCGATACTAATGCCATGTCCCAGACATGGTCTTATATAGGACCTC
Found at i:74239846 original size:40 final size:40
Alignment explanation
Indices: 74239746--74240010 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
74239736 GCTCCTCGTT
* * * *
74239746 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
74239786 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
74239825 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
74239865 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
74239905 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
74239945 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
74239986 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
74240011 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74239970 original size:80 final size:80
Alignment explanation
Indices: 74239713--74240010 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
74239703 AAATCACGTA
* ** * * *
74239713 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
74239775 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
74239791 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
74239854 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
74239871 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
74239935 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
74239951 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
74240011 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:74240019 original size:41 final size:41
Alignment explanation
Indices: 74239942--74240019 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
74239932 TTTGTATCTC
* * *
74239942 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
74239983 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
74240020 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:74247734 original size:27 final size:27
Alignment explanation
Indices: 74247704--74247881 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74247694 ATATTGAGTC
* * * *
74247704 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74247731 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74247758 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74247786 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74247813 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74247840 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74247867 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74247882 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74247843 original size:82 final size:81
Alignment explanation
Indices: 74247725--74247880 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74247715 TGCTATATAA
* *
74247725 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74247790 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74247807 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74247871 CACTTAGTGC
65 CACTTAGTGC
74247881 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74254061 original size:44 final size:47
Alignment explanation
Indices: 74254006--74254120 Score: 146
Period size: 49 Copynumber: 2.5 Consensus size: 47
74253996 CTATGTTACA
* *
74254006 ACCTGTCTGGGACATGGCATCGGCCT-G-ACATG-TGTTAGTGTAAG
1 ACCTGTCTGGGACATGGCATCGGCCTCGAACATGAAGTCAGTGTAAG
*
74254050 ACCTATCTGGGACATGGCATCGGCCTCGATACATGAAAGTCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCGGCCTCGA-ACATG-AAGTCAGTGTAAG
* *
74254099 ACATGTCTAGGACATGGCATCG
1 ACCTGTCTGGGACATGGCATCG
74254121 ACTTAGGTGT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 25 0.42
45 1 0.02
47 5 0.08
49 29 0.48
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (47 bp):
ACCTGTCTGGGACATGGCATCGGCCTCGAACATGAAGTCAGTGTAAG
Found at i:74257855 original size:27 final size:26
Alignment explanation
Indices: 74257825--74257957 Score: 87
Period size: 27 Copynumber: 5.0 Consensus size: 26
74257815 TTTGGAACAT
*
74257825 AGGGGCATAATCGTCAATTTACCATAC
1 AGGGGCATAATCGTCATTTTACC-TAC
*
74257852 A-GGG-ATATTACGATCATTTTATCCTAC
1 AGGGGCATAAT-CG-TCATTTTA-CCTAC
*
74257879 AGGGGCATTAA-GGTCATTTTACCCTAC
1 AGGGGCA-TAATCGTCATTTTA-CCTAC
* *
74257906 AGGGGTATTA-CGATCATTTTACCCTAC
1 AGGGGCATAATCG-TCATTTTA-CCTAC
* *
74257933 AGAGGCATTAT-GATCATTTTACCTA
1 AGGGGCATAATCG-TCATTTTACCTA
74257958 TTTTGGGGTT
Statistics
Matches: 88, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
25 4 0.05
26 12 0.14
27 63 0.72
28 6 0.07
29 1 0.01
30 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
AGGGGCATAATCGTCATTTTACCTAC
Found at i:74257900 original size:54 final size:54
Alignment explanation
Indices: 74257837--74257955 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
74257827 GGGCATAATC
* * *
74257837 GTCAATTTACCATACAGGGATATTACGATCATTTTATCCTACAGGGGCATTAAG
1 GTCATTTTACCATACAGGGATATTACGATCATTTTACCCTACAGAGGCATTAAG
* * *
74257891 GTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAGAGGCATTATG
1 GTCATTTTACCATACAGGGATATTACGATCATTTTACCCTACAGAGGCATTAAG
*
74257945 ATCATTTTACC
1 GTCATTTTACC
74257956 TATTTTGGGG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (54 bp):
GTCATTTTACCATACAGGGATATTACGATCATTTTACCCTACAGAGGCATTAAG
Found at i:74260853 original size:94 final size:92
Alignment explanation
Indices: 74260655--74260882 Score: 237
Period size: 94 Copynumber: 2.4 Consensus size: 92
74260645 GGGTTATTGT
* *
74260655 GAGCTAGAGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGTCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACA-TACGAGAGTCAGTGTAAGACCATG
* * * ***
74260720 TCTGGGACATGGCGTCGGCATTGAGATAA
64 TCTGGGACATGCCATCGACACAAAGATAA
*
74260749 GTGCTAGTGTAAGACATGTCTGGGACATGCATC-G-AC-TACGAGAGGTGTCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATACGAGA---GTCAGTGTAAGACCAT
* *
74260811 GTCTGGGACATGCCATCGACACAAATATGCTA
63 GTCTGGGACATGCCATCGACACAAAGAT--AA
* *
74260843 GAGCTTGTGTAAGACCATGTCTGGGACACAGCATCAGCAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACA-TGCATCAGCAC
74260883 CTGCATCCAT
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
89 6 0.05
91 2 0.02
92 37 0.33
93 1 0.01
94 44 0.40
95 13 0.12
96 5 0.05
97 1 0.01
98 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (92 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATACGAGAGTCAGTGTAAGACCATGTC
TGGGACATGCCATCGACACAAAGATAA
Found at i:74263921 original size:49 final size:49
Alignment explanation
Indices: 74263791--74263934 Score: 182
Period size: 49 Copynumber: 2.9 Consensus size: 49
74263781 TCTATTGTGA
* *
74263791 GGTCGCACGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAATTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-C-AGAATTGT
* * * * * *
74263842 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATTG-T
74263891 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
74263935 TAGCTTCGGC
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
48 3 0.04
49 40 0.51
50 1 0.01
51 34 0.44
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATTGT
Found at i:74272752 original size:9 final size:9
Alignment explanation
Indices: 74272738--74272765 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
74272728 AAAGCCAAGC
74272738 AAATCGACT
1 AAATCGACT
74272747 AAATCGACT
1 AAATCGACT
74272756 AAATCGACT
1 AAATCGACT
74272765 A
1 A
74272766 GTCACCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.21
Consensus pattern (9 bp):
AAATCGACT
Found at i:74273110 original size:45 final size:45
Alignment explanation
Indices: 74273041--74273148 Score: 137
Period size: 46 Copynumber: 2.4 Consensus size: 45
74273031 AGGCCATGTC
* **
74273041 TGGGACATGGCATCGGCATTGAGAC-AAGTGTAGTGTAAGACATATT
1 TGGGACAT-GCATCGGCATCGAGACGAAG-CCAGTGTAAGACATATT
* *
74273087 TGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGTAAGACATGTT
1 TGGGACATGCATCGGCATCGAGACG-AAGCCAGTGTAAGACATATT
74273133 TGGGACATGCATCGGC
1 TGGGACATGCATCGGC
74273149 TATGAGAGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
45 14 0.25
46 38 0.69
47 3 0.05
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
TGGGACATGCATCGGCATCGAGACGAAGCCAGTGTAAGACATATT
Found at i:74273192 original size:46 final size:44
Alignment explanation
Indices: 74273041--74273171 Score: 133
Period size: 46 Copynumber: 2.9 Consensus size: 44
74273031 AGGCCATGTC
74273041 TGGGACATGGCATCGGC-ATTGAGACAAGTGT-AGTGTAAGACATATT
1 TGGGACAT-GCATCGGCTA-TGAG--AAGTGTCAGTGTAAGACATATT
* * * *
74273087 TGGGACATGCATCGGCCT-CGAGACGTAAGCCAGTGTAAGACATGTT
1 TGGGACATGCATCGG-CTATGAGAAGT--GTCAGTGTAAGACATATT
*
74273133 TGGGACATGCATCGGCTATGAGAGGTGTCAGTGTAAGAC
1 TGGGACATGCATCGGCTATGAGAAGTGTCAGTGTAAGAC
74273172 CATTTCTAGG
Statistics
Matches: 72, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
43 3 0.04
44 12 0.17
45 13 0.18
46 44 0.61
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (44 bp):
TGGGACATGCATCGGCTATGAGAAGTGTCAGTGTAAGACATATT
Found at i:74274150 original size:42 final size:40
Alignment explanation
Indices: 74274079--74274159 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 40
74274069 CATGTTTCTA
* *
74274079 CACACGGGCTAGGACACGAGTGTGTCCAGGTCGTGTGAAG
1 CACACAGGCTAGGACACGAGTGTGTCCAGGCCGTGTGAAG
*
74274119 CACACAGGCTAAGGACACGGGCATGTG-CCAGGCCGTGTGAA
1 CACACAGGCT-AGGACACGAG--TGTGTCCAGGCCGTGTGAA
74274160 AACCCCTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 9 0.26
41 9 0.26
42 13 0.37
43 4 0.11
ACGTcount: A:0.25, C:0.25, G:0.36, T:0.15
Consensus pattern (40 bp):
CACACAGGCTAGGACACGAGTGTGTCCAGGCCGTGTGAAG
Found at i:74277012 original size:48 final size:48
Alignment explanation
Indices: 74276960--74277144 Score: 244
Period size: 48 Copynumber: 3.9 Consensus size: 48
74276950 TACGAAATCT
* * * *
74276960 CATATCAGTGGCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* * *
74277008 CATATCAATGCCGATGACATGTCCCAGACGTGGTCTTACATTGGCTCA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* ** *
74277056 TATATCAACACCGATGCCATATCCCAGACATGGTCTTACACTGGCTCA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* * *
74277104 CATATCAACGCTGATGCCATGTCCTAGACATGGTCTTACAC
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
74277145 AGGATCTCAT
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
Found at i:74277450 original size:48 final size:48
Alignment explanation
Indices: 74277343--74277526 Score: 179
Period size: 48 Copynumber: 3.8 Consensus size: 48
74277333 ACTTACACAC
* * * * * * ** *
74277343 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATATC
1 ATATCGATGCCGATGCCATGTCCTAGATATGGTCTTATACGGGACCTT
* * * *
74277391 GTATCGGTGCCGATGCCATGTCTTAGACATGGTCTTATACGGGACCTT
1 ATATCGATGCCGATGCCATGTCCTAGATATGGTCTTATACGGGACCTT
* * * **
74277439 ATCTCGATGCCGATGCCATATCCCAGATATGGTCTTATACGGGGTCTT
1 ATATCGATGCCGATGCCATGTCCTAGATATGGTCTTATACGGGACCTT
***
74277487 ATATCGATGTTAATGCCATGTCCTAGATATGGTCTTATAC
1 ATATCGATGCCGATGCCATGTCCTAGATATGGTCTTATAC
74277527 ATATACATTT
Statistics
Matches: 110, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (48 bp):
ATATCGATGCCGATGCCATGTCCTAGATATGGTCTTATACGGGACCTT
Found at i:74278927 original size:32 final size:32
Alignment explanation
Indices: 74278886--74278964 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
74278876 ACAGTCTCAA
*
74278886 TTGGGCCTAGCCCATCAT-AGAATCAATATCAG
1 TTGGGCCTAGCCCAT-ATCAGAACCAATATCAG
74278918 TTGGGCCTAGCCCATATCAGAACCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
74278950 TTAGGCCTAGCCCAT
1 TTGGGCCTAGCCCAT
74278965 TTCAATGCCA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 42 0.95
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:74279219 original size:16 final size:16
Alignment explanation
Indices: 74279195--74279225 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74279185 CCAATCCCAA
*
74279195 GCAGTATGTCATGCAT
1 GCAGAATGTCATGCAT
74279211 GCAGAATGTCATGCA
1 GCAGAATGTCATGCA
74279226 CAAAATCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (16 bp):
GCAGAATGTCATGCAT
Found at i:74282305 original size:81 final size:81
Alignment explanation
Indices: 74282170--74282331 Score: 252
Period size: 81 Copynumber: 2.0 Consensus size: 81
74282160 ATTTACACAC
* ** *
74282170 CTGGTTGATGACGATTGATGACGATATCTCCCACGCGATAATCCTTTAATCGATCATTAACACAC
1 CTGGTTGATGACGATTAATGACGATATCTCCCACGCGATAATCCTACAATCGATCACTAACACAC
74282235 TAGACTTACGAATTAA
66 TAGACTTACGAATTAA
* * * *
74282251 CTGGTTGATGACGATTAATGACGATATCTCCCATGTGGTAATCCTACAATCGATCACTAACACAT
1 CTGGTTGATGACGATTAATGACGATATCTCCCACGCGATAATCCTACAATCGATCACTAACACAC
74282316 TAGACTTACGAATTAA
66 TAGACTTACGAATTAA
74282332 TGATAACTAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (81 bp):
CTGGTTGATGACGATTAATGACGATATCTCCCACGCGATAATCCTACAATCGATCACTAACACAC
TAGACTTACGAATTAA
Found at i:74295088 original size:19 final size:19
Alignment explanation
Indices: 74295053--74295090 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
74295043 GTGTAGTGCC
*
74295053 CACAAGCCCATTGGGCCCA
1 CACAAGCCCATTCGGCCCA
74295072 CACAA-CCCATTTCGGCCCA
1 CACAAGCCCA-TTCGGCCCA
74295091 ATGTGGCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.26, C:0.45, G:0.16, T:0.13
Consensus pattern (19 bp):
CACAAGCCCATTCGGCCCA
Found at i:74302169 original size:48 final size:48
Alignment explanation
Indices: 74302079--74302301 Score: 229
Period size: 48 Copynumber: 4.6 Consensus size: 48
74302069 GATCCACATA
* * * * *
74302079 TCGATGCCATATCCCAGACATGGTCTT-CTACGA-AATCTCATATCAGCG
1 TCGATGCCATGTCCCAGACATGGTCTTAC-ACTAGCA-CACATATCAACG
*
74302127 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACG
* * * * *
74302175 -CTGATGCTATGTCCTAGACTTGGTCTTACACT-GACTCACATATCAACA
1 TC-GATGCCATGTCCCAGACATGGTCTTACACTAG-CACACATATCAACG
* * * * *
74302223 TCGATCCCATGTCCCAAACATGGTCTTACAGTGGCTCACATATCAACG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACG
*
74302271 CCGATGCCATGTCCCAGACATGGTCTTACAC
1 TCGATGCCATGTCCCAGACATGGTCTTACAC
74302302 GGGATCTCAT
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
47 2 0.01
48 140 0.96
49 4 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACG
Found at i:74302236 original size:96 final size:96
Alignment explanation
Indices: 74302080--74302301 Score: 277
Period size: 96 Copynumber: 2.3 Consensus size: 96
74302070 ATCCACATAT
* * * * * *
74302080 CGATGCCATATCCCAGACATGGTCTT-CTAC-GAAATCTCATATCAGCGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTAC-ACTG-ACTCACATATCAACATCGATCCCATGTCCCA
* *
74302143 GACATGGTCTTACACTAGCACACATATCAATGC
64 AACATGGTCTTACACTAGCACACATATCAACGC
* * * *
74302176 TGATGCTATGTCCTAGACTTGGTCTTACACTGACTCACATATCAACATCGATCCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATATCAACATCGATCCCATGTCCCAAA
* * *
74302241 CATGGTCTTACAGTGGCTCACATATCAACGC
66 CATGGTCTTACACTAGCACACATATCAACGC
74302272 CGATGCCATGTCCCAGACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
74302302 GGGATCTCAT
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
96 103 0.98
97 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATATCAACATCGATCCCATGTCCCAAA
CATGGTCTTACACTAGCACACATATCAACGC
Found at i:74302570 original size:48 final size:48
Alignment explanation
Indices: 74302507--74302686 Score: 243
Period size: 48 Copynumber: 3.8 Consensus size: 48
74302497 CACATATTGA
* * *
74302507 TGCCAATGCCATGTCCAAGACATGGTCTTACATGGGGTCTCATATCGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACGGGGTCTCATATCGG
* * ** * *
74302555 TGCCGATGCCATGTCCCACACATGGTCTTATACGGGACCTCATCTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACGGGGTCTCATATCGG
* * * *
74302603 TGCCGATGCCATATCCTAGATATGGTCTTATACGGGGTCTCATATCGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACGGGGTCTCATATCGG
74302651 TGCCGATGCCATGTCCCAGACATGGTCTTACACGGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACGGG
74302687 ACCTTATCTT
Statistics
Matches: 111, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACGGGGTCTCATATCGG
Found at i:74302629 original size:96 final size:96
Alignment explanation
Indices: 74302505--74302695 Score: 301
Period size: 96 Copynumber: 2.0 Consensus size: 96
74302495 CACACATATT
* *
74302505 GATGCCAATGCCATGTCCAAGACATGGTCTTACATGGGGTCTCATATCGGTGCCGATGCCATGTC
1 GATGCCAATGCCATATCCAAGACATGGTCTTACACGGGGTCTCATATCGGTGCCGATGCCATGTC
*
74302570 CCACACATGGTCTTATACGGGACCTCATCTC
66 CCACACATGGTCTTACACGGGACCTCATCTC
* * * *
74302601 GATGCCGATGCCATATCCTAGATATGGTCTTATACGGGGTCTCATATCGGTGCCGATGCCATGTC
1 GATGCCAATGCCATATCCAAGACATGGTCTTACACGGGGTCTCATATCGGTGCCGATGCCATGTC
* *
74302666 CCAGACATGGTCTTACACGGGACCTTATCT
66 CCACACATGGTCTTACACGGGACCTCATCT
74302696 TGAAATTTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (96 bp):
GATGCCAATGCCATATCCAAGACATGGTCTTACACGGGGTCTCATATCGGTGCCGATGCCATGTC
CCACACATGGTCTTACACGGGACCTCATCTC
Found at i:74310904 original size:105 final size:105
Alignment explanation
Indices: 74310722--74310931 Score: 420
Period size: 105 Copynumber: 2.0 Consensus size: 105
74310712 TTCCCAAAAA
74310722 CTTTTAAGGAAGCCCTAGGAGAGAGGGAAAAAACTTTCCAAGTTTAAAAAGGTCTGAAATCAAGT
1 CTTTTAAGGAAGCCCTAGGAGAGAGGGAAAAAACTTTCCAAGTTTAAAAAGGTCTGAAATCAAGT
74310787 CTCATTTGTAGTAATATTTATATTTTTGGAACCGAGATAG
66 CTCATTTGTAGTAATATTTATATTTTTGGAACCGAGATAG
74310827 CTTTTAAGGAAGCCCTAGGAGAGAGGGAAAAAACTTTCCAAGTTTAAAAAGGTCTGAAATCAAGT
1 CTTTTAAGGAAGCCCTAGGAGAGAGGGAAAAAACTTTCCAAGTTTAAAAAGGTCTGAAATCAAGT
74310892 CTCATTTGTAGTAATATTTATATTTTTGGAACCGAGATAG
66 CTCATTTGTAGTAATATTTATATTTTTGGAACCGAGATAG
74310932 TCTAATCTAT
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (105 bp):
CTTTTAAGGAAGCCCTAGGAGAGAGGGAAAAAACTTTCCAAGTTTAAAAAGGTCTGAAATCAAGT
CTCATTTGTAGTAATATTTATATTTTTGGAACCGAGATAG
Done.