Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 226 of 310
Found at i:74314816 original size:27 final size:27
Alignment explanation
Indices: 74314786--74314856 Score: 108
Period size: 26 Copynumber: 2.7 Consensus size: 27
74314776 TCATCTAATA
* *
74314786 GGGCATAACAGCCATTTTATCACACAG
1 GGGCATAATAGTCATTTTATCACACAG
74314813 GGGCATAATAGTCA-TTTATCACACAG
1 GGGCATAATAGTCATTTTATCACACAG
*
74314839 AGGCATAATAGTCATTTT
1 GGGCATAATAGTCATTTT
74314857 GTCAATTAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 25 0.62
27 15 0.38
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (27 bp):
GGGCATAATAGTCATTTTATCACACAG
Found at i:74315113 original size:50 final size:50
Alignment explanation
Indices: 74315054--74315153 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
74315044 TAATTTTCAC
74315054 ACGTTTGTGTGGGGCCCACATACCCGCGAGGCCCACACAGCCCAGTTCGG
1 ACGTTTGTGTGGGGCCCACATACCCGCGAGGCCCACACAGCCCAGTTCGG
74315104 ACGTTTGTGTGGGGCCCACATACCCGCGAGGCCCACACAGCCCAGTTCGG
1 ACGTTTGTGTGGGGCCCACATACCCGCGAGGCCCACACAGCCCAGTTCGG
74315154 CCCGAAATGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (50 bp):
ACGTTTGTGTGGGGCCCACATACCCGCGAGGCCCACACAGCCCAGTTCGG
Found at i:74316859 original size:29 final size:29
Alignment explanation
Indices: 74316796--74316863 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
74316786 TAATCAACCA
74316796 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
74316825 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
74316854 CGCACACTTA
1 CGCACACTTA
74316864 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:74317004 original size:29 final size:30
Alignment explanation
Indices: 74316965--74317043 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
74316955 CTTAATAATC
74316965 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
74316995 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
74317024 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74317044 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:74319269 original size:39 final size:40
Alignment explanation
Indices: 74319224--74319395 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
74319214 GCTCCTCGTT
* *
74319224 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGTTTTAGTAACTCGCA
*
74319264 C-AATGCCTTCGGGACATAACCCGGTTTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTTTTAGTAACTCGCA
* * * *
74319303 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTTTTAGTAACTCGCA
* * * ** *
74319343 CAAAGGCCTTCGGGGCTTAACCCAGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCC-GGTTTTAGTAACTCGCA
74319383 CAAATGCCTTCGG
1 CAAATGCCTTCGG
74319396 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 36 0.31
40 77 0.65
41 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGTTTTAGTAACTCGCA
Found at i:74319457 original size:41 final size:41
Alignment explanation
Indices: 74319380--74319457 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
74319370 TTTGTATCTC
* * *
74319380 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
74319421 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
74319458 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:74328163 original size:29 final size:29
Alignment explanation
Indices: 74328100--74328167 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
74328090 TAATCAACCG
74328100 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
74328129 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
74328158 CGCACACTTA
1 CGCACACTTA
74328168 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:74328337 original size:29 final size:29
Alignment explanation
Indices: 74328274--74328341 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
74328264 TAATCAACCA
* *
74328274 CGCACACTTAGTGTCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
74328303 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
74328332 CGCACACTTA
1 CGCACACTTA
74328342 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:74328482 original size:29 final size:30
Alignment explanation
Indices: 74328443--74328521 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
74328433 CTTAATAATC
74328443 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
74328473 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
74328502 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74328522 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:74328515 original size:174 final size:174
Alignment explanation
Indices: 74327989--74328490 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
74327979 AACTCAAGGT
* * *
74327989 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
* *
74328054 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
74328119 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
74328163 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
74328228 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGTCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
74328293 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
74328337 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
74328402 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
74328467 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
74328491 TGTACAATTT
Statistics
Matches: 320, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 320 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:74333002 original size:27 final size:27
Alignment explanation
Indices: 74332972--74333028 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
74332962 AAGCCATTTT
74332972 TGTTGATGGAAGCTTTCGGTCCTTGCA
1 TGTTGATGGAAGCTTTCGGTCCTTGCA
74332999 TGTTGATGGAAGCTTTCGGTCCTTGCA
1 TGTTGATGGAAGCTTTCGGTCCTTGCA
74333026 TGT
1 TGT
74333029 GTATGTTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.14, C:0.18, G:0.30, T:0.39
Consensus pattern (27 bp):
TGTTGATGGAAGCTTTCGGTCCTTGCA
Found at i:74334273 original size:13 final size:13
Alignment explanation
Indices: 74334160--74334279 Score: 71
Period size: 13 Copynumber: 9.2 Consensus size: 13
74334150 ATTATGTGAT
* *
74334160 AAATGTGTAAATG
1 AAATGTTTATATG
* * *
74334173 AAATGCTAAAATG
1 AAATGTTTATATG
* *
74334186 AAATATTTAGATG
1 AAATGTTTATATG
* **
74334199 AAATGGTTATACA
1 AAATGTTTATATG
74334212 AAATGTTTATATGG
1 AAATGTTTATAT-G
* *
74334226 AAATAG-ATATTTG
1 AAAT-GTTTATATG
* *
74334239 AAACGGTTATATG
1 AAATGTTTATATG
*
74334252 AAGTGTTTATATG
1 AAATGTTTATATG
*
74334265 AAATATTTATATG
1 AAATGTTTATATG
74334278 AA
1 AA
74334280 TATGGATATG
Statistics
Matches: 79, Mismatches: 25, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
12 1 0.01
13 69 0.87
14 8 0.10
15 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.17, T:0.36
Consensus pattern (13 bp):
AAATGTTTATATG
Found at i:74335529 original size:3 final size:3
Alignment explanation
Indices: 74335517--74335592 Score: 51
Period size: 3 Copynumber: 27.3 Consensus size: 3
74335507 TACTTATATT
* *
74335517 ATA A-A ATA ATA ATA ATA ATGA TTA A-A ATA TATT ATA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA ATA ATA ATA
*
74335561 AT- ATA AT- ATA AT- ATA ATA ATT A-A ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74335593 AAGAAACAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
2 15 0.26
3 38 0.67
4 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:74335555 original size:10 final size:10
Alignment explanation
Indices: 74335511--74335575 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
74335501 TGTATTTACT
74335511 TATATTATAA
1 TATATTATAA
* *
74335521 AATAATAATAA
1 TAT-ATTATAA
*
74335532 TAATGATTAAAA
1 T-AT-ATTATAA
74335544 TATATTATAA
1 TATATTATAA
74335554 TA-A-TATAA
1 TATATTATAA
*
74335562 TATAATATAA
1 TATATTATAA
74335572 TATA
1 TATA
74335576 ATAATTAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
8 7 0.16
9 2 0.05
10 19 0.43
11 8 0.18
12 8 0.18
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (10 bp):
TATATTATAA
Found at i:74335561 original size:5 final size:5
Alignment explanation
Indices: 74335553--74335578 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
74335543 ATATATTATA
74335553 ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
74335579 ATTAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:74335563 original size:18 final size:18
Alignment explanation
Indices: 74335542--74335592 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 18
74335532 TAATGATTAA
74335542 AATATATTATAATAATAT
1 AATATATTATAATAATAT
74335560 AATATA--AT-ATAATAT
1 AATATATTATAATAATAT
*
74335575 AATA-ATTA-AATAAAAT
1 AATATATTATAATAATAT
74335591 AA
1 AA
74335593 AAGAAACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 1 0.03
15 11 0.38
16 11 0.38
18 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AATATATTATAATAATAT
Found at i:74335653 original size:20 final size:18
Alignment explanation
Indices: 74335616--74335667 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 18
74335606 AAGAATGAAT
*
74335616 GAAAAACAAAACAGGGAAA
1 GAAAAAGAAAA-AGGGAAA
74335635 GAAAGAAAGAAAAAGGGAAA
1 G-AA-AAAGAAAAAGGGAAA
74335655 GAAAAAGAAAAAG
1 GAAAAAGAAAAAG
74335668 AAAAGGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 10 0.33
19 3 0.10
20 10 0.33
21 7 0.23
ACGTcount: A:0.71, C:0.04, G:0.25, T:0.00
Consensus pattern (18 bp):
GAAAAAGAAAAAGGGAAA
Found at i:74335654 original size:12 final size:12
Alignment explanation
Indices: 74335638--74335671 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74335628 AGGGAAAGAA
74335638 AGAAAGAAAAAG
1 AGAAAGAAAAAG
*
74335650 GGAAAGAAAAAG
1 AGAAAGAAAAAG
*
74335662 AAAAAGAAAA
1 AGAAAGAAAA
74335672 GGAAAATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:74335676 original size:18 final size:18
Alignment explanation
Indices: 74335616--74335677 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
74335606 AAGAATGAAT
* *
74335616 GAAAAACAAAACAGGGAAA
1 GAAAAAGAAAA-AGGAAAA
*
74335635 GAAAGAAAGAAAAAGGGAAA
1 G-AA-AAAGAAAAAGGAAAA
74335655 GAAAAAGAAAAA-GAAAA
1 GAAAAAGAAAAAGGAAAA
74335672 GGAAAA
1 -GAAAA
74335678 TTTAGGGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.11
18 14 0.37
19 3 0.08
20 10 0.26
21 7 0.18
ACGTcount: A:0.73, C:0.03, G:0.24, T:0.00
Consensus pattern (18 bp):
GAAAAAGAAAAAGGAAAA
Found at i:74337106 original size:50 final size:50
Alignment explanation
Indices: 74336956--74337107 Score: 147
Period size: 50 Copynumber: 3.1 Consensus size: 50
74336946 TACATTTAAG
74336956 AGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAA
1 AGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAA
* * ** ** * * *
74337006 AGTTAT--GTTACAAAGTATA-T-ACAAAGCT--TATTATTAATG-ATTTAAG
1 AGTTATAAATTA-AAGGTA-AGTGATGAAGCTAATAAGATT-ATGAAGTAAAA
74337052 AGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAA
1 AGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAA
74337102 AGTTAT
1 AGTTAT
74337108 GTTACAAAGT
Statistics
Matches: 74, Mismatches: 18, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
46 16 0.22
47 9 0.12
48 18 0.24
49 9 0.12
50 22 0.30
ACGTcount: A:0.47, C:0.03, G:0.18, T:0.32
Consensus pattern (50 bp):
AGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAA
Found at i:74337113 original size:96 final size:96
Alignment explanation
Indices: 74336949--74337147 Score: 398
Period size: 96 Copynumber: 2.1 Consensus size: 96
74336939 GCTTAAATAC
74336949 ATTTAAGAGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAAAGTTATGT
1 ATTTAAGAGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAAAGTTATGT
74337014 TACAAAGTATATACAAAGCTTATTATTAATG
66 TACAAAGTATATACAAAGCTTATTATTAATG
74337045 ATTTAAGAGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAAAGTTATGT
1 ATTTAAGAGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAAAGTTATGT
74337110 TACAAAGTATATACAAAGCTTATTATTAATG
66 TACAAAGTATATACAAAGCTTATTATTAATG
74337141 ATTTAAG
1 ATTTAAG
74337148 TATTAGTTTA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 103 1.00
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.34
Consensus pattern (96 bp):
ATTTAAGAGTTATAAATTAAAGGTAAGTGATGAAGCTAATAAGATTATGAAGTAAAAAGTTATGT
TACAAAGTATATACAAAGCTTATTATTAATG
Found at i:74343132 original size:22 final size:25
Alignment explanation
Indices: 74343085--74343132 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
74343075 TTATAAGAAA
*
74343085 ATAATAATAATGATTAAAGTATATT
1 ATAATAATAATGAATAAAGTATATT
74343110 ATAATAAT-AT-AATAAAGTA-ATT
1 ATAATAATAATGAATAAAGTATATT
74343132 A
1 A
74343133 AATTAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 2 0.09
25 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (25 bp):
ATAATAATAATGAATAAAGTATATT
Found at i:74343170 original size:13 final size:13
Alignment explanation
Indices: 74343137--74343161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74343127 TAATTAAATT
74343137 AAATAAAAGAAAC
1 AAATAAAAGAAAC
74343150 AAATAAAAGAAA
1 AAATAAAAGAAA
74343162 GAATGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.08, T:0.08
Consensus pattern (13 bp):
AAATAAAAGAAAC
Found at i:74344748 original size:133 final size:133
Alignment explanation
Indices: 74344510--74344776 Score: 534
Period size: 133 Copynumber: 2.0 Consensus size: 133
74344500 AAGTATATAC
74344510 ATAGCTTATTTTTAATGATTTAAGTATTAGTTTATAGAAATACCACTGAGTGCATACTCAACGTA
1 ATAGCTTATTTTTAATGATTTAAGTATTAGTTTATAGAAATACCACTGAGTGCATACTCAACGTA
74344575 CGGTTTGTTTCCGTGAGCAGGCTAGGTACGAAAGAAAGCTAAGGACTCAGCATCCAAGCCGATCC
66 CGGTTTGTTTCCGTGAGCAGGCTAGGTACGAAAGAAAGCTAAGGACTCAGCATCCAAGCCGATCC
74344640 CGG
131 CGG
74344643 ATAGCTTATTTTTAATGATTTAAGTATTAGTTTATAGAAATACCACTGAGTGCATACTCAACGTA
1 ATAGCTTATTTTTAATGATTTAAGTATTAGTTTATAGAAATACCACTGAGTGCATACTCAACGTA
74344708 CGGTTTGTTTCCGTGAGCAGGCTAGGTACGAAAGAAAGCTAAGGACTCAGCATCCAAGCCGATCC
66 CGGTTTGTTTCCGTGAGCAGGCTAGGTACGAAAGAAAGCTAAGGACTCAGCATCCAAGCCGATCC
74344773 CGG
131 CGG
74344776 A
1 A
74344777 CTCAAAGTGG
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (133 bp):
ATAGCTTATTTTTAATGATTTAAGTATTAGTTTATAGAAATACCACTGAGTGCATACTCAACGTA
CGGTTTGTTTCCGTGAGCAGGCTAGGTACGAAAGAAAGCTAAGGACTCAGCATCCAAGCCGATCC
CGG
Found at i:74345239 original size:20 final size:20
Alignment explanation
Indices: 74345214--74345251 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
74345204 GCCCCATGGG
74345214 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTTC
74345234 CAGGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
74345252 GCCCCTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.34, G:0.32, T:0.13
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTTC
Found at i:74354548 original size:50 final size:50
Alignment explanation
Indices: 74354466--74354571 Score: 153
Period size: 50 Copynumber: 2.1 Consensus size: 50
74354456 GCTTCCCCTC
* *
74354466 ATATGTATTATGATGGGAGATTCAAGCCTCTCATTGTATTG-GACCTAATT
1 ATATGTATTATGATGAGAGATTCAAGCCTCTCATCGTATTGTG-CCTAATT
*
74354516 ATTATGTATTATGATGAG-GATTCAAGTCTCTCATCGTATTGTGCCTAATT
1 A-TATGTATTATGATGAGAGATTCAAGCCTCTCATCGTATTGTGCCTAATT
74354566 ATATGT
1 ATATGT
74354572 GCTTTCTGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
49 5 0.10
50 30 0.59
51 16 0.31
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (50 bp):
ATATGTATTATGATGAGAGATTCAAGCCTCTCATCGTATTGTGCCTAATT
Found at i:74356013 original size:45 final size:44
Alignment explanation
Indices: 74355949--74356047 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 44
74355939 AACATTAAAC
* * *
74355949 AACCA-GTTAGCAACATTTTCTTCTATTTTGCTTTCCCTGCAAA
1 AACCATGTGAGCACCATTTTCTTCTATTTTGCTTTCCCTACAAA
*
74355992 AACCATGTGAGCACNCATTTTCTTCTATTTTGCTTTGCCTACAAA
1 AACCATGTGAGCAC-CATTTTCTTCTATTTTGCTTTCCCTACAAA
* *
74356037 TACCATTTGAG
1 AACCATGTGAG
74356048 GATAATAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 5 0.10
44 6 0.12
45 37 0.77
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.38
Consensus pattern (44 bp):
AACCATGTGAGCACCATTTTCTTCTATTTTGCTTTCCCTACAAA
Found at i:74367425 original size:132 final size:132
Alignment explanation
Indices: 74367277--74367518 Score: 360
Period size: 132 Copynumber: 1.8 Consensus size: 132
74367267 ATGGAATCTC
* * *
74367277 GAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * *
74367342 GCGAATTGCCAAATATCAAA-CTTTACCTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
66 GCGAATTACCAAATATCAAATC-TCACCTTCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
74367406 TTT
130 TTT
* *
74367409 GAAGGAATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * * *
74367474 GTGAGTTACCAAATATCGAATCTCATCTTCATTTTAAAGAATTTT
66 GCGAATTACCAAATATCAAATCTCACCTTCATTTTAAAGAATTTT
74367519 AAATAATTGT
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 96 0.99
133 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (132 bp):
GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
GCGAATTACCAAATATCAAATCTCACCTTCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAGT
TT
Found at i:74370931 original size:36 final size:36
Alignment explanation
Indices: 74370891--74370959 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
74370881 GAAAGAAAAA
74370891 TTAGAGAAAATAAATAAATAGGAAACAACAACAAAG
1 TTAGAGAAAATAAATAAATAGGAAACAACAACAAAG
74370927 TTAGAGAAAATAAATAAATAGGAAACAACAACA
1 TTAGAGAAAATAAATAAATAGGAAACAACAACA
74370960 TTTCATTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.64, C:0.09, G:0.13, T:0.14
Consensus pattern (36 bp):
TTAGAGAAAATAAATAAATAGGAAACAACAACAAAG
Found at i:74374739 original size:16 final size:16
Alignment explanation
Indices: 74374718--74374756 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
74374708 GATAAGTAGT
74374718 AATAATA-TATAATTAA
1 AATAATACTATAA-TAA
74374734 AATAATACTTATAATAA
1 AATAATAC-TATAATAA
74374751 AATAAT
1 AATAAT
74374757 TTTATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATACTATAATAA
Found at i:74374763 original size:16 final size:17
Alignment explanation
Indices: 74374725--74374765 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
74374715 AGTAATAATA
74374725 TATAATTAAAATAATACT
1 TATAA-TAAAATAATACT
*
74374743 TATAATAAAATAAT-TT
1 TATAATAAAATAATACT
74374759 TATAATA
1 TATAATA
74374766 TATTATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 9 0.41
18 5 0.23
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAATAAAATAATACT
Found at i:74376383 original size:81 final size:82
Alignment explanation
Indices: 74376286--74376466 Score: 231
Period size: 83 Copynumber: 2.2 Consensus size: 82
74376276 GAGTTGTAGA
* * * *
74376286 GATGCCAAATCATCTTGA-TTATTTGAGAACTTTTGAGAACCATATCTGCTATGTCCTCG-TTTT
1 GATGCCAAATCATCTTGAGTTATTTAAGAACATTTGAGAACCATATCTGCAATGTCCTCGATTTA
*
74376349 TTCCTTTGTAAGCACAAG
66 TTCC-TTGTAAACACAAG
* * **
74376367 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTT
1 GATGCCAAATCATCTTGAG-TTATTTAAGAACATTTGAGAACCATATCTGCAATGTCCTCGATTT
74376432 ATTCCTTGTAAACACAAG
65 ATTCCTTGTAAACACAAG
* *
74376450 AATACCAAATCATCTTG
1 GATGCCAAATCATCTTG
74376467 GATCTGCTTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.20
83 61 0.72
84 7 0.08
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (82 bp):
GATGCCAAATCATCTTGAGTTATTTAAGAACATTTGAGAACCATATCTGCAATGTCCTCGATTTA
TTCCTTGTAAACACAAG
Found at i:74376605 original size:119 final size:119
Alignment explanation
Indices: 74376402--74376942 Score: 920
Period size: 119 Copynumber: 4.5 Consensus size: 119
74376392 TAAGAACATT
* * * * * * * * *
74376402 TGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
* * * * *
74376467 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAGAACTTT
66 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
* *
74376521 TGAGAGTCAAATCTGCTATGTCTTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
74376586 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
66 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
74376640 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
74376705 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
66 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
74376759 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
74376824 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
66 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
* *
74376878 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCTAAACCCTCTTG
1 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
74376943 AGTTTGTTTA
Statistics
Matches: 404, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 404 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (119 bp):
TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTC
Found at i:74377144 original size:440 final size:440
Alignment explanation
Indices: 74376520--74377365 Score: 1296
Period size: 440 Copynumber: 1.9 Consensus size: 440
74376510 TTGAGAACTT
* * * * *
74376520 TTGAGAGTCAAATCTGCTATGTCTTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTT
1 TTGAGAGTCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTT
*
74376585 GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGAATCAA
66 GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAA
* * *
74376650 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTC
131 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTC
*
74376715 AGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGAATCAAATCTGCTATGT
196 AGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGT
* * *
74376780 CCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACAA
261 CCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATAAACAA
*
74376845 CTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGT
326 CTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGT
*
74376910 CCCTTGTAAGCACAAGGATGCTAAACCCTCTTGAGTTTGTTTAAGAACAA
391 CCCTTGTAAACACAAGGATGCTAAACCCTCTTGAGTTTGTTTAAGAACAA
* * *
74376960 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
1 TTGAGAGTCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTT
* * * * * * *
74377025 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCAT
66 GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAA
* *
74377090 ATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTC
131 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTC
* * * * * * *
74377155 AGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCATATCTGCTATGT
196 AGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGT
* * * *
74377220 CCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAATAT
261 CCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATAAACAA
* * * * *
74377285 CTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGT
326 CTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGT
*
74377350 TCCTTGTAAACACAAG
391 CCCTTGTAAACACAAG
74377366 AAAACCAAAT
Statistics
Matches: 362, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
440 362 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (440 bp):
TTGAGAGTCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTT
GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAA
ATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTC
AGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGT
CCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATAAACAA
CTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGT
CCCTTGTAAACACAAGGATGCTAAACCCTCTTGAGTTTGTTTAAGAACAA
Found at i:74377164 original size:119 final size:119
Alignment explanation
Indices: 74376960--74377421 Score: 872
Period size: 119 Copynumber: 3.9 Consensus size: 119
74376950 TTAAGAACAA
*
74376960 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
74377025 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
66 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
74377079 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
74377144 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
66 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
74377198 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
74377263 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
66 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
*
74377317 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAAACCAAATCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
* *
74377382 GGATCTGCTTCAGCATAAATGTCTGAA-GTCTAGATCTGCT
66 GGATCTGCTTCAGTATAAATATCTGAAGGT-TAGATCTGCT
74377422 GTCTTCAATT
Statistics
Matches: 338, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
118 2 0.01
119 336 0.99
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (119 bp):
TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTT
Found at i:74377239 original size:321 final size:321
Alignment explanation
Indices: 74376640--74377246 Score: 935
Period size: 321 Copynumber: 1.9 Consensus size: 321
74376630 TGAGAACGTC
* * * *
74376640 TGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAATCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTG
*
74376705 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGAATCAAA
66 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAA
* * *
74376770 TCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCA
131 TCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCA
*
74376835 GTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGAATCAAATCTGCTATGTC
196 GTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGTC
*
74376900 CTCGATTTGTCCCTTGTAAGCACAAGGATGCTAAACCCTCTTGAGTTTGTTTAAGAACAAT
261 CTCGATTTGTCCCTTGTAAACACAAGGATGCTAAACCCTCTTGAGTTTGTTTAAGAACAAT
* * * *
74376961 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAATCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTG
* * * * * * *
74377026 GATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCATA
66 GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAA
* *
74377091 TCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCA
131 TCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCA
* * * * * * *
74377156 GTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCATATCTGCTATGTC
196 GTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGTC
*
74377221 CTCGATTTGTTCCTTGTAAACACAAG
261 CTCGATTTGTCCCTTGTAAACACAAG
74377247 AATACCAAAT
Statistics
Matches: 255, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
321 255 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (321 bp):
TGAGAATCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTG
GATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAA
TCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTTGGATCTGCTTCA
GTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAAATCTGCTATGTC
CTCGATTTGTCCCTTGTAAACACAAGGATGCTAAACCCTCTTGAGTTTGTTTAAGAACAAT
Found at i:74377421 original size:559 final size:559
Alignment explanation
Indices: 74376309--74377400 Score: 1761
Period size: 559 Copynumber: 2.0 Consensus size: 559
74376299 CTTGATTATT
* * * * * *
74376309 TGAGAACTTTTGAGAACCATATCTGCTATGTCCTCGTTTTTTCCTTTGTAAGCACAAGGATGCCA
1 TGAGAACGTCTGAGAACCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCA
*
74376374 AACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
66 AACCATCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
74376439 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
131 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
* *
74376504 CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCTTCGATTTGTCCCTTGTAAGCACAAG
196 CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
* * *
74376569 GATGCCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAG
261 AATACCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAG
* * *
74376634 AACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACC
326 AACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACC
*
74376699 ATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGA
391 ATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGA
* * **
74376764 ATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
456 ATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAAAACCAAACCATCTTGGATCT
*
74376829 GCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATC
521 GCTTCAGCATAAACAACTGAAGGTTAGATCTGCTATATC
* *
74376868 TGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCTA
1 TGAGAACGTCTGAGAACCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCA
* *
74376933 AACCCTCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTT
66 AACCATCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
*
74376998 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTG
131 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
* *
74377063 CTACATTTGAGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAG
196 CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
* * * *
74377128 AATACCAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAG
261 AATACCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAG
* * * * * *
74377193 AACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATC
326 AACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACC
* * * * *
74377258 ATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGA
391 ATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGA
* * * *
74377323 GTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAAACCAAATCATCTTGGATCT
456 ATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAAAACCAAACCATCTTGGATCT
74377388 GCTTCAGCATAAA
521 GCTTCAGCATAAA
74377401 TGTCTGAAGT
Statistics
Matches: 486, Mismatches: 47, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
559 486 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (559 bp):
TGAGAACGTCTGAGAACCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCA
AACCATCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
AATACCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAG
AACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACC
ATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGA
ATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGAAAACCAAACCATCTTGGATCT
GCTTCAGCATAAACAACTGAAGGTTAGATCTGCTATATC
Found at i:74378038 original size:397 final size:397
Alignment explanation
Indices: 74377305--74378098 Score: 1554
Period size: 397 Copynumber: 2.0 Consensus size: 397
74377295 GATCTGCTAC
* *
74377305 ATTTGAGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAAA
1 ATTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAAA
74377370 CCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTAGATCTGCTGTCTTCAATTTGT
66 CCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTAGATCTGCTGTCTTCAATTTGT
74377435 TTCCCATAAGCACAGGGCTGCCATGTTGAAATCTTTGATCTTCATGACCTGTAAGATGAGTATGT
131 TTCCCATAAGCACAGGGCTGCCATGTTGAAATCTTTGATCTTCATGACCTGTAAGATGAGTATGT
74377500 GCCTATACCTAAGTATGCTATGATTGAAATGAGTCGAATGTCCTTAACATGTTATGATGCAAAGT
196 GCCTATACCTAAGTATGCTATGATTGAAATGAGTCGAATGTCCTTAACATGTTATGATGCAAAGT
74377565 GCTGTGAATATGACCCCTATCTCGGGTGTCATTATTCATTCCTTCATTTGTCTTTCTCAAAATTT
261 GCTGTGAATATGACCCCTATCTCGGGTGTCATTATTCATTCCTTCATTTGTCTTTCTCAAAATTT
74377630 CAGCTTGTAGGCCTTCATCCAATGCTATGATCTACTAGGATGTCTGTAAGAATTGAATCATCCAT
326 CAGCTTGTAGGCCTTCATCCAATGCTATGATCTACTAGGATGTCTGTAAGAATTGAATCATCCAT
74377695 TTCTTTT
391 TTCTTTT
74377702 ATTTGAGAA-TGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAA
1 ATTTGAGAACT-TCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAA
74377766 ACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTAGATCTGCTGTCTTCAATTTG
65 ACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTAGATCTGCTGTCTTCAATTTG
74377831 TTTCCCATAAGCACAGGGCTGCCATGTTGAAATCTTTGATCTTCATGACCTGTAAGATGAGTATG
130 TTTCCCATAAGCACAGGGCTGCCATGTTGAAATCTTTGATCTTCATGACCTGTAAGATGAGTATG
74377896 TGCCTATACCTAAGTATGCTATGATTGAAATGAGTCGAATGTCCTTAACATGTTATGATGCAAAG
195 TGCCTATACCTAAGTATGCTATGATTGAAATGAGTCGAATGTCCTTAACATGTTATGATGCAAAG
74377961 TGCTGTGAATATGACCCCTATCTCGGGTGTCATTATTCATTCCTTCATTTGTCTTTCTCAAAATT
260 TGCTGTGAATATGACCCCTATCTCGGGTGTCATTATTCATTCCTTCATTTGTCTTTCTCAAAATT
74378026 TCAGCTTGTAGGCCTTCATCCAATGCTATGATCTACTAGGATGTCTGTAAGAATTGAATCATCCA
325 TCAGCTTGTAGGCCTTCATCCAATGCTATGATCTACTAGGATGTCTGTAAGAATTGAATCATCCA
74378091 TTTCTTTT
390 TTTCTTTT
74378099 TGGATTGGAA
Statistics
Matches: 394, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
396 1 0.00
397 393 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (397 bp):
ATTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAAA
CCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTAGATCTGCTGTCTTCAATTTGT
TTCCCATAAGCACAGGGCTGCCATGTTGAAATCTTTGATCTTCATGACCTGTAAGATGAGTATGT
GCCTATACCTAAGTATGCTATGATTGAAATGAGTCGAATGTCCTTAACATGTTATGATGCAAAGT
GCTGTGAATATGACCCCTATCTCGGGTGTCATTATTCATTCCTTCATTTGTCTTTCTCAAAATTT
CAGCTTGTAGGCCTTCATCCAATGCTATGATCTACTAGGATGTCTGTAAGAATTGAATCATCCAT
TTCTTTT
Found at i:74388915 original size:58 final size:58
Alignment explanation
Indices: 74388825--74388938 Score: 201
Period size: 58 Copynumber: 2.0 Consensus size: 58
74388815 AATTGGCCCG
74388825 ACCAAAAATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAACA
1 ACCAAAAATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAACA
* * *
74388883 ACCAAAAATTTTCGAAAAAAATATGTAGATGGGCATATGAGTCTAGTTTCAGGGAA
1 ACCAAAAATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAA
74388939 AAATCACGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (58 bp):
ACCAAAAATTCTAGAAAAAAATATGTAGATGGGAATATGAGTCTAGTTTCAGGGAACA
Found at i:74390321 original size:35 final size:35
Alignment explanation
Indices: 74390282--74390371 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 35
74390272 CTATCGAGGC
* *
74390282 AATAAACACGAAATAGAGTTAAAATCCAT-TGGGA
1 AATAAACACGAAATAGAGATAAAATCCATCTGAGA
* * * *
74390316 TAATAAACACAAAACAAAGATAAAGTCCATCTGAGA
1 -AATAAACACGAAATAGAGATAAAATCCATCTGAGA
*
74390352 AATAAACATGAAATAGAGAT
1 AATAAACACGAAATAGAGAT
74390372 GAATTTCATC
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
35 40 0.91
36 4 0.09
ACGTcount: A:0.54, C:0.12, G:0.14, T:0.19
Consensus pattern (35 bp):
AATAAACACGAAATAGAGATAAAATCCATCTGAGA
Found at i:74391435 original size:38 final size:38
Alignment explanation
Indices: 74391383--74391466 Score: 141
Period size: 38 Copynumber: 2.2 Consensus size: 38
74391373 AATGACGCTA
* *
74391383 CTCATGTTGTAGATTTGTTCTTCAAATAAGTGATGCAC
1 CTCATGTTGCAGATTTGTTCTTCAAATAAATGATGCAC
74391421 CTCATGTTGCAGATTTGTTCTTCAAATAAATGATGCAC
1 CTCATGTTGCAGATTTGTTCTTCAAATAAATGATGCAC
74391459 CTACATGT
1 CT-CATGT
74391467 AATACCTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 38 0.88
39 5 0.12
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (38 bp):
CTCATGTTGCAGATTTGTTCTTCAAATAAATGATGCAC
Found at i:74398691 original size:40 final size:41
Alignment explanation
Indices: 74398661--74398845 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 41
74398651 GCTACTCGTT
*
74398661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
*
74398701 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* *
74398741 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* * * *
74398780 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAC-TCGCA
74398821 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74398846 CATCATTCAA
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 79 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:74398764 original size:79 final size:81
Alignment explanation
Indices: 74398661--74398845 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
74398651 GCTACTCGTT
* *
74398661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74398724 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
74398741 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
74398805 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
74398821 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74398846 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:74407321 original size:15 final size:16
Alignment explanation
Indices: 74407301--74407330 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74407291 TTATTTATTA
74407301 TTTTATTTT-TTTTAC
1 TTTTATTTTGTTTTAC
74407316 TTTTATTTTGTTTTA
1 TTTTATTTTGTTTTA
74407331 AGATTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTATTTTGTTTTAC
Found at i:74416524 original size:12 final size:12
Alignment explanation
Indices: 74416507--74416540 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74416497 GCATGAAATT
74416507 GAAAATGTATGA
1 GAAAATGTATGA
*
74416519 GAAAATGTATGT
1 GAAAATGTATGA
*
74416531 GAAATTGTAT
1 GAAAATGTAT
74416541 TAGATGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (12 bp):
GAAAATGTATGA
Found at i:74420211 original size:39 final size:39
Alignment explanation
Indices: 74420130--74420223 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
74420120 AAACCAATTG
*
74420130 CCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAATA
1 CCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAATA
* * * * *
74420168 CCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATATTT
1 CCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAATA
*
74420207 CCAGCACGTAGCCTGCG
1 CCAGCACGAAGCCTGCG
74420224 AACCTTAAGT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 12 0.26
39 34 0.74
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAATA
Found at i:74420278 original size:39 final size:39
Alignment explanation
Indices: 74420195--74420281 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
74420185 GGACTTTAGC
* * * *
74420195 CCGGACATATTTCCAGCACGTAGCCTGCGAACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGAACCCTAAGT
*
74420234 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGAACCCTAAGT
*
74420273 TCGGATATA
1 CCGGATATA
74420282 CATCACTGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGAACCCTAAGT
Found at i:74425346 original size:30 final size:30
Alignment explanation
Indices: 74425310--74425378 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
74425300 GTGAGTCTCA
74425310 GCCGTGTGTGACACACGGTTATGTTATATG
1 GCCGTGTGTGACACACGGTTATGTTATATG
* *
74425340 GTCGTGTGTGACACATGGTTATGTTATATG
1 GCCGTGTGTGACACACGGTTATGTTATATG
74425370 GCCGTGTGT
1 GCCGTGTGT
74425379 CCCCTAGTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.17, C:0.14, G:0.32, T:0.36
Consensus pattern (30 bp):
GCCGTGTGTGACACACGGTTATGTTATATG
Found at i:74428760 original size:101 final size:101
Alignment explanation
Indices: 74428063--74428749 Score: 1185
Period size: 101 Copynumber: 6.8 Consensus size: 101
74428053 ATGTGTTTAA
* * *
74428063 GATAGTTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCA
1 GATAGTTTT-GATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCA
74428128 CATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
65 CATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
74428165 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
1 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
74428230 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
66 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
74428266 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
1 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
74428331 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
66 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
74428367 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
1 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
74428432 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
66 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
74428468 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
1 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
74428533 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
66 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
*
74428569 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
* * * * * *
74428634 GTGTGTAGTACTAAGTGTAGGCTACTTTACGTACCT
66 ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
* ** * * * * * * *
74428670 GTTAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCAC
1 GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
74428735 ATGTGTAGTACTAAG
66 ATGTGTAGTACTAAG
74428750 TATAGCCTAC
Statistics
Matches: 565, Mismatches: 20, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
101 556 0.98
102 9 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (101 bp):
GATAGTTTTGATCACGTCTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCAC
ATGTGTAGTACTAAGAGCAGGCTACTATGCGTACCC
Found at i:74428850 original size:40 final size:40
Alignment explanation
Indices: 74428790--74428869 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
74428780 GTCACATGTG
*
74428790 TAGTACTAAGTGCAGACTACTATGCGTACCAAAGAGCGTC
1 TAGTACTAAGTACAGACTACTATGCGTACCAAAGAGCGTC
* *
74428830 TAGTGCTAAGTACAGACTACTATGCGTACCAGAGAGCGTC
1 TAGTACTAAGTACAGACTACTATGCGTACCAAAGAGCGTC
74428870 GGTTACAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.23
Consensus pattern (40 bp):
TAGTACTAAGTACAGACTACTATGCGTACCAAAGAGCGTC
Found at i:74429655 original size:179 final size:181
Alignment explanation
Indices: 74429421--74429754 Score: 485
Period size: 179 Copynumber: 1.9 Consensus size: 181
74429411 TCAGAGATCT
* * *
74429421 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAATTGTTAGATAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATTAGATAGTGAAATAGGGGTA
** * * *
74429486 TTTTTAATGAATAAAATTTACTAATTGGATAAACTAAAAATT-TTGAAAATTTTATGGTAAGAAT
66 ACTTTAATGAATAAAATGTACTAAATGGATAAACCAAAAATTATT-AAAATTTTATGGTAAGAAT
* *
74429550 ATATATGAGTCTAGTTTCT-GAAAAAACTAGGGATTCTCAATTTGGAGTCTC
130 ATATATGAGTATAATTTCTAGAAAAAACTAGGGATTCTCAATTTGGAGTCTC
* * * *
74429601 GTACCATGAGATAACTAA-TTTTAGTGAAGAGAGGTCGGAACTATTGGATAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATTAGATAGTGAAATAGGGGTA
* *
74429665 ACTTTAATGAATAAACTGTACTAAATGGCTAAACCAAAAATTATTAAAATTTTATGGTAAGAATA
66 ACTTTAATGAATAAAATGTACTAAATGGATAAACCAAAAATTATTAAAATTTTATGGTAAGAATA
*
74429730 TATGTGAGTATAATTTCTAGAAAAA
131 TATATGAGTATAATTTCTAGAAAAA
74429755 TTAACGGATC
Statistics
Matches: 135, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
179 110 0.81
180 25 0.19
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (181 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATTAGATAGTGAAATAGGGGTA
ACTTTAATGAATAAAATGTACTAAATGGATAAACCAAAAATTATTAAAATTTTATGGTAAGAATA
TATATGAGTATAATTTCTAGAAAAAACTAGGGATTCTCAATTTGGAGTCTC
Found at i:74433984 original size:180 final size:180
Alignment explanation
Indices: 74433723--74434079 Score: 493
Period size: 180 Copynumber: 2.0 Consensus size: 180
74433713 TCTGAGACCT
*
74433723 GTACCATGAGATAAATAATTTTTAGTGAAAAAAGATCAGAACTGTCAGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAAAAAGATCAGAACTGTCAGACAGTGAAATAGGAGTA
* * * * * *
74433788 TCTCTAATGAATAAACTTTGCTGA-TTGGATAAACTAAAAATTCTGAAAATTTTATGGTAAGAAT
66 ACTCTAATGAATAAACTGTACTAATTTGG-TAAACAAAAAATTCTGAAAATTTTATGATAAGAAT
* * *
74433852 ATATGTGAGTCTAGTTTAT-GATAAAATTAGCGGTTCTTAATTTGGAGTCCC
130 ATATGTGAGTATAGTTTATGGA-AAAATTAACGGATCTTAATTTGGAGTCCC
* * * * * * * *
74433903 GTACCATGAGATAAATAATTTTTAGTGAATAGAGGTCGGAATTGTTAGATAGTGGAATAGGAGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAAAAAGATCAGAACTGTCAGACAGTGAAATAGGAGTA
* *
74433968 ACTTTAATGAATAAACTGTACTAATTTGGTAAACAAAAAATTCTGAAAATTTTGTGATAAGAATA
66 ACTCTAATGAATAAACTGTACTAATTTGGTAAACAAAAAATTCTGAAAATTTTATGATAAGAATA
*
74434033 TATGTGAGTATAGTTTTTGGAAAAATTAACGGATCTTAATTTGGAGT
131 TATGTGAGTATAGTTTATGGAAAAATTAACGGATCTTAATTTGGAGT
74434080 TCTGTAGCTC
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
180 148 0.96
181 6 0.04
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTAGTGAAAAAAGATCAGAACTGTCAGACAGTGAAATAGGAGTA
ACTCTAATGAATAAACTGTACTAATTTGGTAAACAAAAAATTCTGAAAATTTTATGATAAGAATA
TATGTGAGTATAGTTTATGGAAAAATTAACGGATCTTAATTTGGAGTCCC
Found at i:74434727 original size:45 final size:45
Alignment explanation
Indices: 74434644--74434735 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
74434634 TTACAGTTAA
*
74434644 GGCAACATGACAAAAACGAATAAGACCATAGCTAAAAGACGCTAT
1 GGCAACATGACAAAAACGAATAAGACCATAGCTAAAAGACACTAT
* * * ** *
74434689 GGCAACATGACGAAAATGAATAAGACCGTATTTGAAAGACACTAT
1 GGCAACATGACAAAAACGAATAAGACCATAGCTAAAAGACACTAT
74434734 GG
1 GG
74434736 GAATTTGTCG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (45 bp):
GGCAACATGACAAAAACGAATAAGACCATAGCTAAAAGACACTAT
Found at i:74443045 original size:29 final size:30
Alignment explanation
Indices: 74442978--74443089 Score: 110
Period size: 29 Copynumber: 3.9 Consensus size: 30
74442968 ACCCCTACAT
* * *
74442978 ACATGCATATGGCCCA-CTGGGCCCAATGT-
1 ACATTCATATGGACCATCTAGGCCCAAT-TC
* *
74443007 -CATTCATATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGACCATCTAGGCCCAATTC
* *
74443035 ATATTCTTATGGACCA-CTAGGCCCAATTC
1 ACATTCATATGGACCATCTAGGCCCAATTC
74443064 ACATTCATATGGACCAT-TAGGCCCAA
1 ACATTCATATGGACCATCTAGGCCCAA
74443090 ATCATATGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
27 1 0.01
28 23 0.33
29 46 0.66
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (30 bp):
ACATTCATATGGACCATCTAGGCCCAATTC
Found at i:74443095 original size:58 final size:57
Alignment explanation
Indices: 74442985--74443096 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 57
74442975 CATACATGCA
* * * **
74442985 TATGGCCCACTGGGCCCAATGTCATTCATATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGACCACTAGGCCCAATGTCATTCATATGGACCATCTGGCCCAAATCATATTCT
74443042 TATGGACCACTAGGCCCAAT-TCACATTCATATGGACCAT-TAGGCCCAAATCATAT
1 TATGGACCACTAGGCCCAATGT--CATTCATATGGACCATCT-GGCCCAAATCATAT
74443097 GATTCTCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
56 1 0.02
57 19 0.40
58 27 0.57
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (57 bp):
TATGGACCACTAGGCCCAATGTCATTCATATGGACCATCTGGCCCAAATCATATTCT
Found at i:74443192 original size:18 final size:19
Alignment explanation
Indices: 74443169--74443206 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
74443159 ATGGGCCCAA
74443169 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
74443187 TAGCCCATTCCGGCCCATT
1 TAGCCCATTCAGGCCCATT
74443206 T
1 T
74443207 GGCCAATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.18, C:0.39, G:0.16, T:0.26
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:74443215 original size:19 final size:19
Alignment explanation
Indices: 74443179--74443215 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74443169 TAGCCCATCA
*
74443179 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
74443198 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
74443216 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:74444875 original size:20 final size:20
Alignment explanation
Indices: 74444850--74444888 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
74444840 CATAGCTTTG
74444850 TTCATTCTTATTAGC-CATGA
1 TTCATT-TTATTAGCTCATGA
*
74444870 TTCATTTTCTTAGCTCATG
1 TTCATTTTATTAGCTCATG
74444889 TGTCATTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (20 bp):
TTCATTTTATTAGCTCATGA
Found at i:74452399 original size:30 final size:29
Alignment explanation
Indices: 74452365--74452428 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
74452355 ATGAATTGGA
74452365 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
74452395 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
74452424 AGCTT
1 AGCTT
74452429 CGGCTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:74458606 original size:13 final size:13
Alignment explanation
Indices: 74458588--74458612 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74458578 GAATTGACAT
74458588 GTGTGAAAATTTC
1 GTGTGAAAATTTC
74458601 GTGTGAAAATTT
1 GTGTGAAAATTT
74458613 AACTGCTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:74459643 original size:30 final size:29
Alignment explanation
Indices: 74459609--74459676 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
74459599 ATGAATCAGA
* *
74459609 AGCTTTGGTACTAAGTGTGCGATTCAAACT
1 AGCTTCGGCACTAAGTGTGCGATT-AAACT
* *
74459639 AGCTTCGGCAGTAAGTGTGCGATTTAACT
1 AGCTTCGGCACTAAGTGTGCGATTAAACT
74459668 AGCTTCGGC
1 AGCTTCGGC
74459677 TACTTAAGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 13 0.38
30 21 0.62
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (29 bp):
AGCTTCGGCACTAAGTGTGCGATTAAACT
Found at i:74459676 original size:29 final size:30
Alignment explanation
Indices: 74459620--74459676 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
74459610 GCTTTGGTAC
74459620 TAAGTGTGCGATTCAAACTAGCTTCGGCAG
1 TAAGTGTGCGATTCAAACTAGCTTCGGCAG
*
74459650 TAAGTGTGCGATT-TAACTAGCTTCGGC
1 TAAGTGTGCGATTCAAACTAGCTTCGGC
74459677 TACTTAAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (30 bp):
TAAGTGTGCGATTCAAACTAGCTTCGGCAG
Found at i:74463735 original size:40 final size:40
Alignment explanation
Indices: 74463534--74463727 Score: 318
Period size: 40 Copynumber: 4.9 Consensus size: 40
74463524 ATTCGGATTG
* *
74463534 ATAACCAGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74463573 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74463613 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74463653 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74463693 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
74463728 AAGCTATATC
Statistics
Matches: 145, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 12 0.08
40 133 0.92
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74465448 original size:33 final size:33
Alignment explanation
Indices: 74465406--74465471 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
74465396 GGAGAGGAAG
74465406 AGGGTGAACGACTAAGGTAGGGGAAAATTGAAT
1 AGGGTGAACGACTAAGGTAGGGGAAAATTGAAT
74465439 AGGGTGAACGACTAAGGTAGGGGAAAATTGAAT
1 AGGGTGAACGACTAAGGTAGGGGAAAATTGAAT
74465472 TAAAGGCTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.06, G:0.36, T:0.18
Consensus pattern (33 bp):
AGGGTGAACGACTAAGGTAGGGGAAAATTGAAT
Found at i:74465513 original size:30 final size:30
Alignment explanation
Indices: 74465477--74465536 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
74465467 TGAATTAAAG
74465477 GCTGAAAAATACAATAAAAAATTGTATTTA
1 GCTGAAAAATACAATAAAAAATTGTATTTA
*
74465507 GCTGAAAAATACAATAAAAATTTGTATTTA
1 GCTGAAAAATACAATAAAAAATTGTATTTA
74465537 TACTTAGGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.32
Consensus pattern (30 bp):
GCTGAAAAATACAATAAAAAATTGTATTTA
Found at i:74467664 original size:24 final size:24
Alignment explanation
Indices: 74467614--74467667 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
74467604 AATCGAATTT
*
74467614 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
74467638 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
74467662 GCACAC
1 GCACAC
74467668 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:74471251 original size:18 final size:21
Alignment explanation
Indices: 74471228--74471270 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
74471218 AATGTTGCAG
74471228 CATCT-AGTC-AGTGTC-TGA
1 CATCTAAGTCTAGTGTCATGA
*
74471246 CATCTAATTCTAGTGTCATGA
1 CATCTAAGTCTAGTGTCATGA
74471267 CATC
1 CATC
74471271 ATGGCAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 3 0.14
20 6 0.29
21 7 0.33
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (21 bp):
CATCTAAGTCTAGTGTCATGA
Found at i:74475233 original size:63 final size:62
Alignment explanation
Indices: 74475137--74475262 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 62
74475127 TTTTTAAAGT
74475137 AAAAAAAGTGTTGATGATAATTAGTAAAGAAAAGAGTGTCATTACACCCACCCACCGAAGAA
1 AAAAAAAGTGTTGATGATAATTAGTAAAGAAAAGAGTGTCATTACACCCACCCACCGAAGAA
*
74475199 AAAAAAATGTGTTGATGATAATTAGTAAAGAAAAGAGTGTCGTTACACCCACCCACCGAAGAA
1 AAAAAAA-GTGTTGATGATAATTAGTAAAGAAAAGAGTGTCATTACACCCACCCACCGAAGAA
74475262 A
1 A
74475263 TGATTGGTCA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 7 0.11
63 55 0.89
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (62 bp):
AAAAAAAGTGTTGATGATAATTAGTAAAGAAAAGAGTGTCATTACACCCACCCACCGAAGAA
Found at i:74475469 original size:18 final size:18
Alignment explanation
Indices: 74475446--74475481 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74475436 GCAGCTTCTC
74475446 TTCCCATCTCAACTGACG
1 TTCCCATCTCAACTGACG
74475464 TTCCCATCTCAACTGACG
1 TTCCCATCTCAACTGACG
74475482 ATGGCATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.39, G:0.11, T:0.28
Consensus pattern (18 bp):
TTCCCATCTCAACTGACG
Found at i:74510591 original size:20 final size:20
Alignment explanation
Indices: 74510563--74510600 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74510553 CTAGGAACTA
74510563 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
74510583 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
74510601 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:74520361 original size:85 final size:85
Alignment explanation
Indices: 74520205--74520361 Score: 183
Period size: 85 Copynumber: 1.8 Consensus size: 85
74520195 CGAGAAATCA
* * * * * *
74520205 TGTAAGACCATGTCTGGGACACAGGCCTCGATTTGAGAATTACGTGTAAGACCATGTCTAGGACA
1 TGTAAGACCATGTCTGGGACACAGGCATCAATCT-AGAATTACATATAAGACCACGTCTAGGACA
*
74520270 TTGGCATCGTATCTAATTTTG
65 TCGGCATCGTATCTAATTTTG
* *
74520291 TGTAAGACCCTGTCTGGGACAGAGGCATCAATACT-GAATTACATATAAGACCACGTC-AGGGAC
1 TGTAAGACCATGTCTGGGACACAGGCATCAAT-CTAGAATTACATATAAGACCACGTCTA-GGAC
*
74520354 GTCGGCAT
64 ATCGGCAT
74520362 TGTACCAGGT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
84 1 0.02
85 29 0.49
86 28 0.47
87 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (85 bp):
TGTAAGACCATGTCTGGGACACAGGCATCAATCTAGAATTACATATAAGACCACGTCTAGGACAT
CGGCATCGTATCTAATTTTG
Found at i:74523583 original size:32 final size:32
Alignment explanation
Indices: 74523539--74523602 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
74523529 AAGTAGTTGG
* *
74523539 GCCTGATGGGCCATATGAATGTGATTGGGCCT
1 GCCTGATAGGCCATATGAATGAGATTGGGCCT
* *
74523571 GCCTGATAGGCCATGTGAGTGAGATTGGGCCT
1 GCCTGATAGGCCATATGAATGAGATTGGGCCT
74523603 AAAGGGGCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.27
Consensus pattern (32 bp):
GCCTGATAGGCCATATGAATGAGATTGGGCCT
Found at i:74523949 original size:27 final size:27
Alignment explanation
Indices: 74523919--74524071 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
74523909 TAATAAAGAG
* *
74523919 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
74523946 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
74523973 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74524000 AAATTACTGAAACACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* * *
74524027 AAATTATCGAAATACCCT-TATAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
74524054 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
74524072 TGTAGTGTAA
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 3 0.03
27 108 0.97
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:74524072 original size:27 final size:27
Alignment explanation
Indices: 74523919--74524098 Score: 163
Period size: 27 Copynumber: 6.7 Consensus size: 27
74523909 TAATAAAGAG
* *
74523919 AAATTACCAAAATACCCTCA-ATTTGTA
1 AAATTACCGAAATACCCTGATA-TTGTA
74523946 AAATTACCGAAATACCCTCGAT-TTGTA
1 AAATTACCGAAATACCCT-GATATTGTA
**
74523973 AAATTACTAAAATACCCTCGAT-TTGTA
1 AAATTACCGAAATACCCT-GATATTGTA
* *
74524000 AAATTACTGAAACACCCCTGAT-TTGTA
1 AAATTACCGAAATA-CCCTGATATTGTA
* * *
74524027 AAATTATCGAAATACCCTTATAGTGTA
1 AAATTACCGAAATACCCTGATATTGTA
*
74524054 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCC-TGATATTGTA
* * *
74524081 AAATGACTGACATACCCT
1 AAATTACCGAAATACCCT
74524099 TGTAGGGTAA
Statistics
Matches: 132, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.05
27 119 0.90
28 6 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTGATATTGTA
Found at i:74524081 original size:54 final size:54
Alignment explanation
Indices: 74523942--74524111 Score: 184
Period size: 54 Copynumber: 3.1 Consensus size: 54
74523932 ACCCTCAATT
* * * *
74523942 TGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGAT-T
1 TGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACTGAAATACCCT-TATAG
* * *
74523996 TGTAAAATTACTGAAACACCCCTGATTTGTAAAATTA-TCGAAATACCCTTATAG
1 TGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACT-GAAATACCCTTATAG
* * * *
74524050 TGTAAAATTACCGAAATACCCTTG-TAGTGTAAAATGACTGACATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGAT-TTGTAAAATTACTGAAATACCCTTATAG
*
74524104 GGTAAAAT
1 TGTAAAAT
74524112 GACTGTTTTG
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
53 4 0.04
54 92 0.95
55 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (54 bp):
TGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACTGAAATACCCTTATAG
Found at i:74524081 original size:81 final size:81
Alignment explanation
Indices: 74523939--74524090 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
74523929 AATACCCTCA
* * *
74523939 ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAAT
1 ATTTGTAAAATTACCGAAATACCCTCGATGTGTAAAATTACCAAAATACCCTCGATGTGTAAAAT
*
74524004 TACTGAAACACCCCTG
66 GACTGAAACACCCCTG
* * * *
74524020 ATTTGTAAAATTATCGAAATACCCT-TATAGTGTAAAATTACCGAAATACCCTTG-TAGTGTAAA
1 ATTTGTAAAATTACCGAAATACCCTCGAT-GTGTAAAATTACCAAAATACCCTCGAT-GTGTAAA
74524083 ATGACTGA
64 ATGACTGA
74524091 CATACCCTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.05
81 58 0.95
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.32
Consensus pattern (81 bp):
ATTTGTAAAATTACCGAAATACCCTCGATGTGTAAAATTACCAAAATACCCTCGATGTGTAAAAT
GACTGAAACACCCCTG
Found at i:74524099 original size:27 final size:27
Alignment explanation
Indices: 74523942--74524116 Score: 124
Period size: 27 Copynumber: 6.5 Consensus size: 27
74523932 ACCCTCAATT
* * * *
74523942 TGTAAAATTACCGAAATACCCTCG-ATT
1 TGTAAAATGACTGAAATACCCTTGTA-G
* * * *
74523969 TGTAAAATTACTAAAATACCCTCG-ATT
1 TGTAAAATGACTGAAATACCCTTGTA-G
* * * *
74523996 TGTAAAATTACTGAAACACCCCTG-ATT
1 TGTAAAATGACTGAAATACCCTTGTA-G
* *
74524023 TGTAAAATTA-TCGAAATACCCTTATAG
1 TGTAAAATGACT-GAAATACCCTTGTAG
* *
74524050 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
74524077 TGTAAAATGACTGACATACCCTTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
74524104 GGTAAAATGACTG
1 TGTAAAATGACTG
74524117 TTTTGCCCTT
Statistics
Matches: 129, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 127 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (27 bp):
TGTAAAATGACTGAAATACCCTTGTAG
Found at i:74524588 original size:11 final size:11
Alignment explanation
Indices: 74524572--74524597 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74524562 ATTGCATGTA
74524572 TGATATTATTG
1 TGATATTATTG
74524583 TGATATTATTG
1 TGATATTATTG
74524594 TGAT
1 TGAT
74524598 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:74527427 original size:68 final size:67
Alignment explanation
Indices: 74527355--74527511 Score: 190
Period size: 68 Copynumber: 2.3 Consensus size: 67
74527345 CTTAAAATTA
* * * *
74527355 AGCTGTTCGAATGTGTTCGATTCACTATTCAAAGCA-TCATCATTTATGCTATTTTATTTGGTAA
1 AGCTGTCCGAATGTGTT-GATTCACTATTCAAAGCACT-ACCATATATGCTATTTTATTTAGTAA
74527419 ATGT
64 ATGT
* * * * *
74527423 AGCTGTCCGAATGTGTTAAATTCATTATTCGATGCACTACCATATATGCTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTT-GATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
74527488 TGT
65 TGT
*
74527491 AGCTGTCCGAATCTGTTGATT
1 AGCTGTCCGAATGTGTTGATT
74527512 TCACAGTTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 3 0.04
68 72 0.95
69 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (67 bp):
AGCTGTCCGAATGTGTTGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAAT
GT
Found at i:74530697 original size:40 final size:41
Alignment explanation
Indices: 74530640--74530741 Score: 154
Period size: 41 Copynumber: 2.5 Consensus size: 41
74530630 NNNNNNNNNN
*
74530640 TTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCC
* *
74530680 TTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCC
1 TTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAAGCC
74530721 TTCGGGACTTAGCCCGGATAT
1 TTCGGGACTTAGCCCGGATAT
74530742 CATTCGAGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
39 3 0.06
40 21 0.39
41 27 0.50
42 3 0.06
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (41 bp):
TTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCC
Found at i:74538666 original size:40 final size:40
Alignment explanation
Indices: 74538622--74538806 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
74538612 GCTACTCGTT
* *
74538622 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCTCA
* * *
74538662 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAATCGT-A
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTC-TCA
* * *
74538702 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCTCA
* * *
74538741 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACT-TAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCT--CA
74538782 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74538807 CATCATTCGA
Statistics
Matches: 118, Mismatches: 18, Indels: 18
0.77 0.12 0.12
Matches are distributed among these distances:
38 4 0.03
39 26 0.22
40 75 0.64
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCTCA
Found at i:74545959 original size:43 final size:43
Alignment explanation
Indices: 74545910--74546028 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
74545900 GCATGAAACT
*
74545910 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
74545953 TGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
74545996 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCA
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
74546029 TAATGCTGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.11, C:0.22, G:0.34, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:74546211 original size:29 final size:29
Alignment explanation
Indices: 74546179--74546275 Score: 117
Period size: 29 Copynumber: 3.3 Consensus size: 29
74546169 ATGAGCATTA
74546179 TGTGTGCGAGATCGGTAATTGAGGCACTG
1 TGTGTGCGAGATCGGTAATTGAGGCACTG
** ** *
74546208 TGTGTGCGA-ATTCCTTTAACCGA-GCACTA
1 TGTGTGCGAGA-T-CGGTAATTGAGGCACTG
74546237 TGTGTGCGAGATCGGTAATTGAGGCACTG
1 TGTGTGCGAGATCGGTAATTGAGGCACTG
74546266 TGTGTGCGAG
1 TGTGTGCGAG
74546276 TTCTTCAACC
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
28 7 0.13
29 40 0.74
30 7 0.13
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (29 bp):
TGTGTGCGAGATCGGTAATTGAGGCACTG
Found at i:74546329 original size:58 final size:58
Alignment explanation
Indices: 74546171--74546309 Score: 235
Period size: 58 Copynumber: 2.4 Consensus size: 58
74546161 TAATGAATAT
* *
74546171 GAGCATTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAATTCCTTTAACC
1 GAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAATTCCTTCAACC
*
74546229 GAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAGTT-CTTCAACC
1 GAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAATTCCTTCAACC
*
74546286 GAGCACTATGTGTGCAAGATCGGT
1 GAGCACTATGTGTGCGAGATCGGT
74546310 CAGTGGGCAC
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 30 0.39
58 47 0.61
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (58 bp):
GAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAATTCCTTCAACC
Found at i:74548720 original size:68 final size:68
Alignment explanation
Indices: 74548636--74548776 Score: 167
Period size: 68 Copynumber: 2.1 Consensus size: 68
74548626 TTAAGCTGTT
* * * * *
74548636 CGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGTTGTTTTATTTGGTAAATGTAGC
1 CGAATGTGTTAAATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAAATGTAGC
74548700 TATC
65 TATC
* * * * *
74548704 CGAATGTGTTAAATTCATTCTTCGATGCACTACCATATATGCTGTTTTATTTAGTTAATGTAGCT
1 CGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAATGTAGCT
*
74548769 GTC
66 ATC
74548772 CGAAT
1 CGAAT
74548777 CTATTGATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
68 60 0.98
69 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (68 bp):
CGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAATGTAGCT
ATC
Found at i:74554999 original size:10 final size:10
Alignment explanation
Indices: 74554984--74555015 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
74554974 TTGAAACATG
74554984 ATCTATCCAT
1 ATCTATCCAT
74554994 ATCTATCCAT
1 ATCTATCCAT
74555004 ATCTATCCAT
1 ATCTATCCAT
74555014 AT
1 AT
74555016 TTTGGACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (10 bp):
ATCTATCCAT
Found at i:74555072 original size:17 final size:16
Alignment explanation
Indices: 74555039--74555070 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74555029 GTTGTAACGC
74555039 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
74555055 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
74555071 ACTTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:74556611 original size:29 final size:29
Alignment explanation
Indices: 74556578--74556680 Score: 115
Period size: 29 Copynumber: 3.6 Consensus size: 29
74556568 AGGTGATTTA
**
74556578 GGCCTAATGGGCCATATGAATATGTTTTG
1 GGCCTAATGGGCCATATGAATATGAATTG
*
74556607 GGCCTAATGGGCCATATGAATGTGAATTG
1 GGCCTAATGGGCCATATGAATATGAATTG
*
74556636 GGCCTGATGGGCCATAT-AA-ATGAGA-TG
1 GGCCTAATGGGCCATATGAATATGA-ATTG
*
74556663 GGCC-AAGTGGGTCATATG
1 GGCCTAA-TGGGCCATATG
74556681 CATGTATGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 18 0.28
28 3 0.05
29 42 0.66
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATATGAATTG
Found at i:74557763 original size:17 final size:18
Alignment explanation
Indices: 74557730--74557764 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74557720 TTTTAAGAAG
74557730 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
74557748 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
74557765 TTCAATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:74563149 original size:38 final size:38
Alignment explanation
Indices: 74563098--74563174 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
74563088 AACAACACCC
74563098 GTCTAAAACCTTATTTTAATGAGAATGATAGCAGGAAT
1 GTCTAAAACCTTATTTTAATGAGAATGATAGCAGGAAT
* *
74563136 GTCTAAAACCTTATTTTGATGAGAATGATTGCAGGAAT
1 GTCTAAAACCTTATTTTAATGAGAATGATAGCAGGAAT
74563174 G
1 G
74563175 AGGAGTATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.32
Consensus pattern (38 bp):
GTCTAAAACCTTATTTTAATGAGAATGATAGCAGGAAT
Found at i:74563535 original size:55 final size:54
Alignment explanation
Indices: 74563452--74563595 Score: 153
Period size: 55 Copynumber: 2.6 Consensus size: 54
74563442 TGTGACATAG
* ** * *
74563452 CCGTGGGTGAACCTACCAAAACAGCACGGGCGTGCGACACGCCCGTGCCTTGAAC
1 CCGT-GGTGAACCTATCAAATTAACACGGGCGTGCGACACGCCCGTGCCTAGAAC
* * * * *
74563507 CCGTGGCTGAACCTATCAAATTAACACGGGCGTACGACATGCTCGTGTCTAGCAC
1 CCGTGG-TGAACCTATCAAATTAACACGGGCGTGCGACACGCCCGTGCCTAGAAC
* *
74563562 CCGTGGTCGAACCTGTTAAATTAACACGGGCGTG
1 CCGTGGT-GAACCTATCAAATTAACACGGGCGTG
74563596 GGCCCATATA
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
54 3 0.04
55 71 0.96
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (54 bp):
CCGTGGTGAACCTATCAAATTAACACGGGCGTGCGACACGCCCGTGCCTAGAAC
Found at i:74583994 original size:19 final size:19
Alignment explanation
Indices: 74583972--74584018 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
74583962 CTTCCTTTCT
*
74583972 TTTGCATT-CATTCCATACA
1 TTTGCATTACATT-CAAACA
*
74583991 TTTGCATTACATTGAAACA
1 TTTGCATTACATTCAAACA
74584010 TTTGCATTA
1 TTTGCATTA
74584019 AAATTTCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCAAACA
Found at i:74584188 original size:24 final size:24
Alignment explanation
Indices: 74584151--74584201 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
74584141 TAGAAAGGAT
* * *
74584151 AGAACAAATGCAAAGGGAGATGCA
1 AGAACAAATACAAACGCAGATGCA
*
74584175 AGAACAATTACAAACGCAGATGCA
1 AGAACAAATACAAACGCAGATGCA
74584199 AGA
1 AGA
74584202 GCAACTGGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.16, G:0.24, T:0.10
Consensus pattern (24 bp):
AGAACAAATACAAACGCAGATGCA
Found at i:74592123 original size:44 final size:44
Alignment explanation
Indices: 74592053--74592163 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 44
74592043 CACAGATCTT
* * * *
74592053 ACCCCATAAGCAGTAGGGGAATAGATCGAAGACAACGAGCTTTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAACAACGAGCTTTA
* * *
74592097 ACCCCCTAAGTAGTAGGGAAACAGATCGAAAATAATGAGCTTTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAACAACGAGCTTTA
*
74592141 ACCCCCTAAGCAGTAGGGTAACA
1 ACCCCCTAAGCAGTAGGGAAACA
74592164 AGCCAAATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.17
Consensus pattern (44 bp):
ACCCCCTAAGCAGTAGGGAAACAGATCGAAAACAACGAGCTTTA
Found at i:74592199 original size:43 final size:44
Alignment explanation
Indices: 74592089--74592204 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 44
74592079 CGAAGACAAC
* * * *
74592089 GAGCTTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAAATAAT
1 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGAGCCAAAATAAT
* * *
74592133 GAGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAAATTTACA-
1 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGAGCCAAA-ATA-AT
74592177 GA-CCTTAACCCCCTAAGTAGTAGGGTAA
1 GAGCCTTAACCCCCTAAGTAGTAGGGTAA
74592205 TAGGCTGAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 29 0.46
44 33 0.52
45 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (44 bp):
GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGAGCCAAAATAAT
Found at i:74592366 original size:44 final size:44
Alignment explanation
Indices: 74592321--74592653 Score: 216
Period size: 44 Copynumber: 7.6 Consensus size: 44
74592311 AGATCTCAAC
74592321 CCCCTAAGCAG-AGGGAAACAGATTGAAGATGATGAGTCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAA
* ** * * * * *
74592364 CCCCTAAGCAGTAGGGTAACAGGCT-AA-AT-TTACAGACCTCAAC
1 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGAT-GAG-TCTTAAA
*
74592407 CCCCTAAGCAGTAGGGAAGCAGATTGAAGATGATGAGTCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAA
* * * * * *
74592451 ACCCTAAGCAGTAGGGTAACAGACT-AA-AT-TTACAGATCTTAAC
1 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGAT-GAG-TCTTAAA
* ** *
74592494 CCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGCCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAA
* * ** ** * **
74592538 CCCCTAAGTAGTAGGGTAACAGGCTG-ATTTTACAAGATCTTAAA
1 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAG-TCTTAAA
* * * ** * *
74592582 CACCTAAGCAGTAGGGAAACAGA-TCACTGATGACAAGCCTTAAT
1 CCCCTAAGCAGTAGGGAAACAGATTGA-AGATGATGAGTCTTAAA
* *
74592626 CCCCTAAGCAGTAGGGTAACAGGTTGAA
1 CCCCTAAGCAGTAGGGAAACAGATTGAA
74592654 AATCAAATAT
Statistics
Matches: 213, Mismatches: 62, Indels: 29
0.70 0.20 0.10
Matches are distributed among these distances:
41 2 0.01
42 8 0.04
43 72 0.34
44 115 0.54
45 14 0.07
46 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (44 bp):
CCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAA
Found at i:74592450 original size:87 final size:87
Alignment explanation
Indices: 74592305--74592648 Score: 467
Period size: 87 Copynumber: 4.0 Consensus size: 87
74592295 CAGATTGAAG
*
74592305 ATTTACAGATCTCAACCCCCTAAGCAG-AGGGAAACAGATTGAAGATGATGAGTCTTAAACCCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
74592369 AAGCAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACAGGCTAA
* * * *
74592391 ATTTACAGACCTCAACCCCCTAAGCAGTAGGGAAGCAGATTGAAGATGATGAGTCTTAAAACCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
*
74592456 AAGCAGTAGGGTAACAGACTAA
66 AAGCAGTAGGGTAACAGGCTAA
* * **
74592478 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGCCTTAAACCCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
* *
74592543 AAGTAGTAGGGTAACAGGCTGA
66 AAGCAGTAGGGTAACAGGCTAA
* * * * * * ** *
74592565 TTTTACAAGATCTTAAACACCTAAGCAGTAGGGAAACAGA-TCACTGATGACAAGCCTTAATCCC
1 ATTTAC-AGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGA-AGATGATGAGCCTTAAACCC
74592629 CTAAGCAGTAGGGTAACAGG
64 CTAAGCAGTAGGGTAACAGG
74592649 TTGAAAATCA
Statistics
Matches: 228, Mismatches: 27, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
86 26 0.11
87 138 0.61
88 64 0.28
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (87 bp):
ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGGCTAA
Found at i:74592750 original size:41 final size:41
Alignment explanation
Indices: 74592695--74592790 Score: 156
Period size: 41 Copynumber: 2.3 Consensus size: 41
74592685 GAGCAGCTAA
* *
74592695 AAGCCACAGCAGATCTCCTTGAAGTTTCATTGGATTAATCG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGATTAATCG
*
74592736 AAGCTACAGCAGATCTCCTTGAAGTTTTAGTGGATTAATCG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGATTAATCG
*
74592777 AATCTACAGCAGAT
1 AAGCTACAGCAGAT
74592791 GTAACACCCC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (41 bp):
AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGATTAATCG
Found at i:74594431 original size:28 final size:28
Alignment explanation
Indices: 74594399--74594497 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
74594389 ATAGTAAGTC
*
74594399 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
74594427 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
74594455 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
74594484 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74594498 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 45 0.71
29 18 0.29
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74606985 original size:19 final size:20
Alignment explanation
Indices: 74606961--74606998 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74606951 GGTACCACCA
74606961 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
74606980 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
74606999 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:74614388 original size:19 final size:20
Alignment explanation
Indices: 74614364--74614401 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74614354 GGTACCACCA
74614364 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
74614383 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
74614402 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:74614726 original size:46 final size:45
Alignment explanation
Indices: 74614624--74614750 Score: 150
Period size: 46 Copynumber: 2.8 Consensus size: 45
74614614 TAACCCGCCC
* *
74614624 CTAAGTGAACTCGGACTCAACTCAACGAGCTCGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCG--GACTAGTTACAT
* * * *
74614671 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTAGTTACAT
74614714 CCTTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74614751 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
43 6 0.09
44 3 0.04
45 2 0.03
46 55 0.80
47 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTAGTTACAT
Found at i:74615207 original size:30 final size:30
Alignment explanation
Indices: 74615173--74615232 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
74615163 ATTTAATACG
74615173 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
74615203 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
74615233 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:74619278 original size:27 final size:28
Alignment explanation
Indices: 74619240--74619299 Score: 113
Period size: 27 Copynumber: 2.2 Consensus size: 28
74619230 TTAACACAAT
74619240 GTCATCAAGTATCATAGGTACATTTT-A
1 GTCATCAAGTATCATAGGTACATTTTAA
74619267 GTCATCAAGTATCATAGGTACATTTTAA
1 GTCATCAAGTATCATAGGTACATTTTAA
74619295 GTCAT
1 GTCAT
74619300 GCCATTTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 26 0.81
28 6 0.19
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (28 bp):
GTCATCAAGTATCATAGGTACATTTTAA
Found at i:74619759 original size:40 final size:40
Alignment explanation
Indices: 74619715--74619795 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
74619705 ACATAACCCT
74619715 AATGTCATGACATTTGTATCCTAACTATTCCTAAGGTTCA
1 AATGTCATGACATTTGTATCCTAACTATTCCTAAGGTTCA
74619755 AATGTCATGACATTTGTATCCTAACTATTCCTAAGGTTCA
1 AATGTCATGACATTTGTATCCTAACTATTCCTAAGGTTCA
74619795 A
1 A
74619796 CTGGTGTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (40 bp):
AATGTCATGACATTTGTATCCTAACTATTCCTAAGGTTCA
Found at i:74623506 original size:48 final size:48
Alignment explanation
Indices: 74623439--74623660 Score: 206
Period size: 48 Copynumber: 4.7 Consensus size: 48
74623429 CACATGGTAG
* * *
74623439 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *** **
74623487 GATGTCAATGCTATGTCCCAGACATGGTCTTACATGGGGTTGTAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
74623535 GATGCCAATGCCATGTCCCAGACATGGACTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* ** * *
74623583 GATG-C--TG--ATAG-CCCAG-CTATGGTCTTACACGAAATTATATATC
1 GATGCCAATGCCAT-GTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
74623626 GATGCCAAAGGCATGTCCCAGACATGGTCTTACAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT
74623661 AGGACCGCAT
Statistics
Matches: 137, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 30 0.22
44 2 0.01
45 2 0.01
46 1 0.01
47 2 0.01
48 98 0.72
49 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:74623644 original size:91 final size:95
Alignment explanation
Indices: 74623439--74623660 Score: 265
Period size: 91 Copynumber: 2.4 Consensus size: 95
74623429 CACATGGTAG
* * * *
74623439 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATTGATGTCAATGCTATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGTC-ATGATATGTC
* *** * *
74623504 CCAGACATGGTCTTACATGGGGTTGTAGGTC
65 CCAGACATGGTCTTACACGAAATTATAGATC
*
74623535 GATGCCAATGCCATGTCCCAGACATGGACTTACATGGGATCACATATCGATG-C-TGATA-G-CC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGTCATGATATGTCC
*
74623596 CAG-CTATGGTCTTACACGAAATTATATATC
66 CAGAC-ATGGTCTTACACGAAATTATAGATC
* *
74623626 GATGCCAAAGGCATGTCCCAGACATGGTCTTACAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT
74623661 AGGACCGCAT
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 55 0.50
92 1 0.01
93 4 0.04
95 1 0.01
96 48 0.44
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (95 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGTCATGATATGTCC
CAGACATGGTCTTACACGAAATTATAGATC
Found at i:74624926 original size:18 final size:20
Alignment explanation
Indices: 74624890--74624936 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74624880 AGTTGTAAGT
74624890 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
74624910 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
74624929 ATGATATA
1 AT-ATATA
74624937 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:74625366 original size:50 final size:50
Alignment explanation
Indices: 74625285--74625679 Score: 364
Period size: 50 Copynumber: 7.9 Consensus size: 50
74625275 TTCATTGTGA
* * *
74625285 GTCACGTGTGTAGTACTAAGTTCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * * * *
74625335 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAG
* * * * * * *
74625386 ATCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
** *
74625436 GTCATGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * * ** * *
74625486 GTCGCATGTGTAGTTCTAAGTGTAGGCTACTATGCATACTC-G-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGATTGA--TAG
* * * * * * * * * * *
74625537 ATAACGTGTGTAATACTAAGTGCAGACTACTATGTGAATCAAATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
*
74625587 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* **
74625637 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
74625680 GAGCTTCGGT
Statistics
Matches: 265, Mismatches: 72, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
49 6 0.02
50 190 0.72
51 67 0.25
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
Found at i:74625465 original size:101 final size:100
Alignment explanation
Indices: 74625286--74625679 Score: 307
Period size: 101 Copynumber: 3.9 Consensus size: 100
74625276 TCATTGTGAG
* * * *
74625286 TCACGTGTGTAGTACTAAGT-TCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGT-AGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTA
* * *
74625350 CTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGA
65 CTAAGTGCAAGCTACTATGCGTACCAGATTAA--TAGA
* * **
74625387 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTAC
* * *
74625452 TAAGTGCAAGCTACTATGTGTACCAGATTGATAGG
66 TAAGTGCAAGCTACTATGCGTACCAGATTAATAGA
* * * ** ** ** * * *
74625487 TCGCATGTGTAGTTCTAAGTGTAGGCTACTATGCATACTC-G-TTAACTTCGATAACGTGTGTAA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTAC-CAGATGGA-TAAG-TCACATGTGTAG
* * * * *
74625550 TACTAAGTGC-AGACTACTATGTGAATCAAATGGTTA-AG-
63 TACTAAGTGCAAG-CTACTATGCGTACCAGAT--TAATAGA
* * * * * *
74625588 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTAC
* *
74625653 TAAGTGCAGGCTACTATGCATACCAGA
66 TAAGTGCAAGCTACTATGCGTACCAGA
74625680 GAGCTTCGGT
Statistics
Matches: 231, Mismatches: 51, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
99 1 0.00
100 70 0.30
101 149 0.65
102 9 0.04
103 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAAGCTACTATGCGTACCAGATTAATAGA
Found at i:74625558 original size:151 final size:151
Alignment explanation
Indices: 74625284--74625676 Score: 651
Period size: 151 Copynumber: 2.6 Consensus size: 151
74625274 ATTCATTGTG
*
74625284 AGTCACGTGTGTAGTACTAAGTTCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * *
74625349 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATAACGTGTGTAATACTAAGTGCAGACT
* *
74625414 ACTATGTGTATCAGATGGTTA
131 ACTATGTGAATCAAATGGTTA
* * *
74625435 AGTCATGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * *
74625500 TCTAAGTGTAGGCTACTATGCATACTCGTTAACTTCGATAACGTGTGTAATACTAAGTGCAGACT
66 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATAACGTGTGTAATACTAAGTGCAGACT
74625565 ACTATGTGAATCAAATGGTTA
131 ACTATGTGAATCAAATGGTTA
*
74625586 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
74625651 ACTAAGTGCAGGCTACTATGCATACC
66 ACTAAGTGCAGGCTACTATGCATACC
74625677 AGAGAGCTTC
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 221 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATAACGTGTGTAATACTAAGTGCAGACT
ACTATGTGAATCAAATGGTTA
Found at i:74625901 original size:17 final size:17
Alignment explanation
Indices: 74625879--74625911 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74625869 AGAATGGAGT
74625879 AAGTGAAATTATGTAAA
1 AAGTGAAATTATGTAAA
*
74625896 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
74625912 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
AAGTGAAATTATGTAAA
Found at i:74629184 original size:40 final size:40
Alignment explanation
Indices: 74629140--74629323 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
74629130 GCTACTCGTT
* *
74629140 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
74629180 CAAATACCTTCGAGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
74629220 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
74629259 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
74629300 CAAA-GCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
74629324 ACATCAATCG
Statistics
Matches: 118, Mismatches: 18, Indels: 16
0.78 0.12 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 71 0.60
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74629308 original size:79 final size:80
Alignment explanation
Indices: 74629148--74629324 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
74629138 TTCAAATGCT
* * *
74629148 TTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATACCTTCGAGACTTAACCCGGATTTAGT
1 TTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATACCTTCGAGACTTAACCCGGATATAGT
* *
74629212 AACTCGCACCAATGCC
65 AACTAGCACCAAAGCC
* ** *
74629228 TTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCG-GATCTTAGTCCGGATATGGT
1 TTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATACCTTCGAGA-CTTAACCCGGATATAGT
*
74629291 CACTTAGCA-CAAAGCC
65 AAC-TAGCACCAAAGCC
*
74629307 TTTGGGACTTAGCCCGGA
1 TTCGGGACTTAGCCCGGA
74629325 CATCAATCGA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.02
79 58 0.71
80 22 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATACCTTCGAGACTTAACCCGGATATAGTA
ACTAGCACCAAAGCC
Found at i:74636161 original size:37 final size:37
Alignment explanation
Indices: 74636119--74636192 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
74636109 TCCTATGAAA
74636119 ATAGATTCATCAAGGTTCGATTACATAATTTATTCAC
1 ATAGATTCATCAAGGTTCGATTACATAATTTATTCAC
*
74636156 ATAGATTCATCAAGGTTCGTTTACATAATTTATTCAC
1 ATAGATTCATCAAGGTTCGATTACATAATTTATTCAC
74636193 TATTTAATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (37 bp):
ATAGATTCATCAAGGTTCGATTACATAATTTATTCAC
Found at i:74637102 original size:79 final size:80
Alignment explanation
Indices: 74637004--74637186 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
74636994 TACTCGTTCA
* * *
74637004 AATGCTTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCCGG
* *
74637067 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
74637084 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
74637148 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
74637163 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
74637187 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 60 0.67
80 27 0.30
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:74637186 original size:40 final size:40
Alignment explanation
Indices: 74637002--74637186 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74636992 GCTACTCGTT
* * *
74637002 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
74637042 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
74637082 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
74637121 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
74637162 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74637187 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:74650381 original size:51 final size:52
Alignment explanation
Indices: 74650304--74650403 Score: 184
Period size: 51 Copynumber: 1.9 Consensus size: 52
74650294 CAACCCTATG
74650304 TGTGACAGCCCCAAAATTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAGT
1 TGTGACAGCCCCAAAATTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAGT
*
74650356 TGTGACAG-CCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCAC
1 TGTGACAGCCCCAAAATTGACCCTAGTCGAGAAGTGGTTTCGGGACCAC
74650404 TAAACCGAGT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 39 0.83
52 8 0.17
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (52 bp):
TGTGACAGCCCCAAAATTGACCCTAGTCGAGAAGTGGTTTCGGGACCACAGT
Found at i:74652215 original size:39 final size:40
Alignment explanation
Indices: 74652093--74652277 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74652083 TTGAATGATG
* * * * *
74652093 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
***
74652133 TCCGGACCAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74652173 TCCGGGTTAAGTCCTGAAGGCATTTGT-CGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
74652212 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
74652253 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
74652278 AATGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 39 0.31
40 78 0.61
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74652299 original size:79 final size:79
Alignment explanation
Indices: 74652093--74652310 Score: 214
Period size: 79 Copynumber: 2.7 Consensus size: 79
74652083 TTGAATGATG
* * * * ***
74652093 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACCAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGT-C-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAT
74652156 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* * *
74652173 TCCGGGTTAAGTCCTGAAGGCATTTGTCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTG
74652238 TGCGAGTTACTATAA
66 TGCGAGTTACTA-AA
* * *
74652253 -CCGGGCTATGTCCCGAAGGCATTTGAAT-GAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTG--TCGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
74652311 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 77 0.66
80 32 0.28
81 6 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTG
TGCGAGTTACTAAA
Done.