Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 227 of 310
Found at i:74656438 original size:126 final size:126
Alignment explanation
Indices: 74656215--74656520 Score: 451
Period size: 126 Copynumber: 2.5 Consensus size: 126
74656205 TAGTCTAAGG
* * *
74656215 CTTTTTCAGATACTACTGTAG-AAAAAATGTGTCCACGTGGGAGC---TTTCCGTAATTTTGCTG
1 CTTTTTCAGATACTACTGTAGCAAAAAA-GCGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTA
* *
74656276 ACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTA
65 ACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
* * * *
74656338 TTTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGTAGCTTTTTTCCGTAATTTTATTAA
1 CTTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTAA
* * *
74656403 TAGTGCATCCTTCTTGAAGCGTTTTTGATACTATTTGTTCAAAAACATCTTTTCAAAATTA
66 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
*
74656464 CTTTTTCAGATACTACTGTAGCAAAAAAGCATCCACGTGGGAGCTTTTTT-CGTAATT
1 CTTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCCGTAATT
74656521 AATAGTTAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
123 34 0.21
124 5 0.03
125 7 0.04
126 117 0.72
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (126 bp):
CTTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTAA
CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
Found at i:74656662 original size:16 final size:17
Alignment explanation
Indices: 74656641--74656724 Score: 73
Period size: 16 Copynumber: 4.8 Consensus size: 17
74656631 AAAAAACACT
74656641 AAAACCCTAAACC-TTA
1 AAAACCCTAAACCATTA
*
74656657 AAAACCCTAAACCACTA
1 AAAACCCTAAACCATTA
*
74656674 AACCCTAACCTTAAACCAATTA
1 AA----AACCCTAAACC-ATTA
* *
74656696 AAAACCCTAACCCA-AA
1 AAAACCCTAAACCATTA
74656712 AAAACCCTAAACC
1 AAAACCCTAAACC
74656725 CTAATTTAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
16 26 0.47
17 5 0.09
18 9 0.16
21 10 0.18
22 5 0.09
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAACCCTAAACCATTA
Found at i:74656666 original size:24 final size:25
Alignment explanation
Indices: 74656627--74656677 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
74656617 TTAATTTTTC
74656627 CCTTAAAAAACACTAAAACC-CTAAA
1 CCTTAAAAAACACT-AAACCACTAAA
*
74656652 CCTT-AAAAACCCTAAACCACTAAA
1 CCTTAAAAAACACTAAACCACTAAA
74656676 CC
1 CC
74656678 CTAACCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 15 0.62
25 4 0.17
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.16
Consensus pattern (25 bp):
CCTTAAAAAACACTAAACCACTAAA
Found at i:74656816 original size:15 final size:15
Alignment explanation
Indices: 74656796--74656847 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
74656786 TTAAAAAATA
74656796 CTAAAACCTTAAACC
1 CTAAAACCTTAAACC
*
74656811 CTAAAACCCCTAAACC
1 CTAAAA-CCTTAAACC
*
74656827 ATTAAAA-CTT-AACC
1 -CTAAAACCTTAAACC
74656841 CTAAAAC
1 CTAAAAC
74656848 AATCAAAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
13 5 0.17
14 4 0.13
15 8 0.27
16 8 0.27
17 5 0.17
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (15 bp):
CTAAAACCTTAAACC
Found at i:74656822 original size:157 final size:158
Alignment explanation
Indices: 74656617--74657043 Score: 486
Period size: 157 Copynumber: 2.6 Consensus size: 158
74656607 TCTAATTAAA
* *
74656617 TTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCTTAAAAACCCTAAACCACTAAACCCTAA
1 TTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCCTAAAAACCCTAAACCACTAAAACCTAA
* * *
74656682 CCTTAAACCAATTAAAAACCCTAACCCA-AAAAAACCCTAAACCCTAATTTAATTGATTTTTT-A
66 CCCTAAAACAATCAAAAACCCTAA-CCATAAAAAACCCTAAACCCTAATTTAATTGATTTTTTAA
74656745 ATTTCATAGTTAATTTAATTAATTAACCC
130 ATTTCATAGTTAATTTAATTAATTAACCC
* * * * *
74656774 TTAATTTTTCCCTTAAAAAATACTAAAACCTTAAACCCTAAAACCCCTAAACCATTAAAACTTAA
1 TTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCCTAAAAACCCTAAACCACTAAAACCTAA
* * * *
74656839 CCCTAAAACAATCAAAACCCCTAATCATAAAAAACCTTAAACCCTAATTTAATTTATTTTTTAAA
66 CCCTAAAACAATCAAAAACCCTAACCATAAAAAACCCTAAACCCTAATTTAATTGATTTTTTAAA
74656904 TTTCATAGTTAATTTAATTAATTAACCCTCAACTC
131 TTTCATAGTTAATTTAATTAATTAA----C--C-C
**
74656939 TAATTAAATTAATTTTCTCC-T-AAAAACACTAAAACCCTAAACTTTAAAAA-CCTCAAACCACT
1 ---TT-AA-T--TTTTC-CCTTAAAAAACACTAAAACCCTAAACCCTAAAAACCCT-AAACCACT
* * * *
74657001 AAACCCTAACCTTAAAATAATCAAAAACCCTAACCCTAAAAAA
57 AAAACCTAACCCTAAAACAATCAAAAACCCTAACCATAAAAAA
74657044 AGGGGCAAAA
Statistics
Matches: 225, Mismatches: 27, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
156 2 0.01
157 110 0.49
158 27 0.12
162 1 0.00
164 1 0.00
165 1 0.00
168 2 0.01
169 2 0.01
170 4 0.02
171 67 0.30
172 6 0.03
173 2 0.01
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (158 bp):
TTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCCTAAAAACCCTAAACCACTAAAACCTAA
CCCTAAAACAATCAAAAACCCTAACCATAAAAAACCCTAAACCCTAATTTAATTGATTTTTTAAA
TTTCATAGTTAATTTAATTAATTAACCC
Found at i:74656986 original size:24 final size:24
Alignment explanation
Indices: 74656959--74657004 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
74656949 AATTTTCTCC
74656959 TAAAAACACTAAAACC-CTAAACTT
1 TAAAAAC-CTAAAACCACTAAACTT
*
74656983 TAAAAACCTCAAACCACTAAAC
1 TAAAAACCTAAAACCACTAAAC
74657005 CCTAACCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.17
Consensus pattern (24 bp):
TAAAAACCTAAAACCACTAAACTT
Found at i:74657025 original size:30 final size:32
Alignment explanation
Indices: 74656965--74657025 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 32
74656955 CTCCTAAAAA
* *
74656965 CACTAAAACCCTAAACTTTAAAAACCTCAAAC
1 CACTAAAACCCTAAACCTTAAAAACATCAAAC
74656997 CACT-AAACCCT-AACCTTAAAATA-ATCAAA
1 CACTAAAACCCTAAACCTTAAAA-ACATCAAA
74657026 AACCCTAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 14 0.54
31 8 0.31
32 4 0.15
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.20
Consensus pattern (32 bp):
CACTAAAACCCTAAACCTTAAAAACATCAAAC
Found at i:74659673 original size:12 final size:12
Alignment explanation
Indices: 74659656--74659680 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74659646 TTAAGCTCGA
74659656 ATCTGCATCTGT
1 ATCTGCATCTGT
74659668 ATCTGCATCTGT
1 ATCTGCATCTGT
74659680 A
1 A
74659681 ATGGGCTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (12 bp):
ATCTGCATCTGT
Found at i:74660433 original size:24 final size:25
Alignment explanation
Indices: 74660404--74660458 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
74660394 TCTAAAACTC
*
74660404 AGATAGCTTAATTTGAAAA-ACTAT
1 AGATAGCATAATTTGAAAACACTAT
*
74660428 AGATAGCATATTTTGAAAACACTAT
1 AGATAGCATAATTTGAAAACACTAT
74660453 AGATAG
1 AGATAG
74660459 TACTATCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.31
Consensus pattern (25 bp):
AGATAGCATAATTTGAAAACACTAT
Found at i:74663674 original size:27 final size:27
Alignment explanation
Indices: 74663644--74663821 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
74663634 ATATTGAGTC
* * * *
74663644 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74663671 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
74663698 CGCACACTTAGTGCTGCATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74663726 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74663753 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74663780 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74663807 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74663822 GTACAATTCA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74663783 original size:82 final size:81
Alignment explanation
Indices: 74663665--74663820 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
74663655 TGCTATATAA
* **
74663665 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTGCATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74663730 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74663747 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74663811 CACTTAGTGC
65 CACTTAGTGC
74663821 TGTACAATTC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74663833 original size:82 final size:83
Alignment explanation
Indices: 74663644--74663833 Score: 212
Period size: 82 Copynumber: 2.3 Consensus size: 83
74663634 ATATTGAGTC
* * * * *
74663644 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
**
74663708 GTGCTGCATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
74663726 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
74663787 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
74663807 CGCACACTTAGTGCTGTACAATTCAAT
1 CGCACACTTAGTGCTGTACAATTCAAT
74663834 CCCGCGCACT
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 68 0.76
83 1 0.01
84 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:74669489 original size:13 final size:13
Alignment explanation
Indices: 74669471--74669512 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
74669461 ACTGTGTGGT
74669471 GCACGCCACACGG
1 GCACGCCACACGG
*
74669484 GCACGCCATACGG
1 GCACGCCACACGG
* *
74669497 GCATGCCACATGG
1 GCACGCCACACGG
74669510 GCA
1 GCA
74669513 TGTGGTTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.38, G:0.31, T:0.07
Consensus pattern (13 bp):
GCACGCCACACGG
Found at i:74680377 original size:16 final size:16
Alignment explanation
Indices: 74680346--74680388 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
74680336 AGTATAGTAG
74680346 ATTTT-GTTTATTATTTT
1 ATTTTAGTTTA-T-TTTT
74680363 ATTTCTAGTTTATTTTT
1 ATTT-TAGTTTATTTTT
74680380 ATTTTAGTT
1 ATTTTAGTT
74680389 GAGGGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.21
17 12 0.50
18 2 0.08
19 5 0.21
ACGTcount: A:0.19, C:0.02, G:0.07, T:0.72
Consensus pattern (16 bp):
ATTTTAGTTTATTTTT
Found at i:74683433 original size:23 final size:22
Alignment explanation
Indices: 74683380--74683433 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
74683370 CTTAACCTAA
*
74683380 AATTATTAATTCTAATTATTTT
1 AATTATTTATTCTAATTATTTT
74683402 AA-TATTTTATT-TAATTAATTTTT
1 AATTA-TTTATTCTAATT-A-TTTT
74683425 AATTATTTA
1 AATTATTTA
74683434 ATTATCTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 7 0.26
22 8 0.30
23 10 0.37
24 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
AATTATTTATTCTAATTATTTT
Found at i:74683434 original size:15 final size:15
Alignment explanation
Indices: 74683380--74683436 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
74683370 CTTAACCTAA
*
74683380 AATTA-TTAA-TTCT
1 AATTATTTAATTTTT
74683393 AATTATTTTAATATTTT
1 AATTA-TTTAAT-TTTT
* *
74683410 ATTTAATTAATTTTT
1 AATTATTTAATTTTT
74683425 AATTATTTAATT
1 AATTATTTAATT
74683437 ATCTAATCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 5 0.14
15 18 0.51
16 5 0.14
17 7 0.20
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTATTTAATTTTT
Found at i:74695320 original size:22 final size:22
Alignment explanation
Indices: 74695293--74695414 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
74695283 CATGTGTATG
74695293 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
74695315 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
74695340 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
74695362 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
74695387 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
74695409 TGTGAT
1 TGTGAT
74695415 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:74695429 original size:47 final size:47
Alignment explanation
Indices: 74694660--74695421 Score: 1237
Period size: 47 Copynumber: 16.1 Consensus size: 47
74694650 TATTTGAATA
* * * *
74694660 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATATGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
74694707 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74694756 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74694803 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
74694850 AATGTGAACATGTGTATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
74694897 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
74694944 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74694993 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74695040 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74695087 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74695134 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74695181 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74695228 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
74695275 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
** * *
74695322 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
74695369 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
74695416 GATGTG
1 AATGTG
74695422 GAAGTGTATA
Statistics
Matches: 688, Mismatches: 19, Indels: 16
0.95 0.03 0.02
Matches are distributed among these distances:
46 2 0.00
47 596 0.87
49 88 0.13
50 2 0.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:74703674 original size:44 final size:43
Alignment explanation
Indices: 74703567--74703680 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 43
74703557 ATATACAATT
* * *
74703567 CCAACGTCCTATACGTGGTCTTACATGTAATCAAACATCGATG
1 CCAACGTCCTAGACGTGGTCTTACACGTAAACAAACATCGATG
74703610 CC-ACTGTCCTAGACAG-GGTCTTACACGTAAAACAAA-AGTCGATG
1 CCAAC-GTCCTAGAC-GTGGTCTTACACGT-AAACAAACA-TCGATG
*
74703654 CCAACGTCCCAGACGTGGTCTTACACG
1 CCAACGTCCTAGACGTGGTCTTACACG
74703681 ATATCACATA
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
42 2 0.03
43 23 0.38
44 34 0.56
45 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
CCAACGTCCTAGACGTGGTCTTACACGTAAACAAACATCGATG
Found at i:74710052 original size:27 final size:28
Alignment explanation
Indices: 74709968--74710065 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
74709958 CATGAGATTG
* * * *
74709968 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
74709997 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
74710025 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74710052 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
74710066 GACTGAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74710079 original size:29 final size:27
Alignment explanation
Indices: 74709996--74710078 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
74709986 TAAATTGTAC
* *
74709996 AGCACTAAGTGTGTGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTGATTATAT
*
74710024 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTGATTATAT
* *
74710051 AGCACTGAGTGTGCG-GACTGAATATAT
1 AGCACTAAGTGTGCGAG-CTGATTATAT
74710078 A
1 A
74710079 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 33 0.66
28 16 0.32
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGATTATAT
Found at i:74712273 original size:46 final size:46
Alignment explanation
Indices: 74712181--74712309 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
74712171 TGTAACCCGC
* * * * * *
74712181 CCATAAGCGAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74712227 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74712273 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74712310 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74714729 original size:15 final size:15
Alignment explanation
Indices: 74714700--74714749 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
74714690 CAAAGATAAC
*
74714700 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
74714714 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
74714729 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
74714744 AAGAAA
1 AAGAAA
74714750 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.32
15 19 0.61
16 2 0.06
ACGTcount: A:0.62, C:0.12, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:74717764 original size:46 final size:46
Alignment explanation
Indices: 74717689--74717817 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
74717679 TATAACCCGC
* * * * *
74717689 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
74717735 CCATGAGTGAACTCGGACTCAACTTAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74717781 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74717818 TACTCAACCT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74722996 original size:79 final size:81
Alignment explanation
Indices: 74722894--74723078 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
74722884 GCTCCTCGTT
* *
74722894 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74722957 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
74722974 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
74723038 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
74723054 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74723079 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:74723078 original size:40 final size:40
Alignment explanation
Indices: 74722894--74723078 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
74722884 GCTCCTCGTT
* *
74722894 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
74722934 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
74722974 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
74723013 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
74723054 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74723079 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:74724332 original size:14 final size:14
Alignment explanation
Indices: 74724295--74724323 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74724285 CTTGAAATTT
74724295 TCACACATTCATAA
1 TCACACATTCATAA
74724309 TCACACATTCATAA
1 TCACACATTCATAA
74724323 T
1 T
74724324 TACATATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.31
Consensus pattern (14 bp):
TCACACATTCATAA
Found at i:74724998 original size:43 final size:43
Alignment explanation
Indices: 74724930--74725015 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
74724920 AAATCATACA
*
74724930 ATGCCAATGTCCCAGACGTGATCTTACAT-GTAACCACATATCG
1 ATGCCAATGTCCCAGACGTGATCTTAC-TCGTAAACACATATCG
* *
74724973 ATGCCACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGAC-GTGATCTTACTCGTAAACACATATCG
74725016 GAATCACATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGATCTTACTCGTAAACACATATCG
Found at i:74731219 original size:38 final size:38
Alignment explanation
Indices: 74731128--74731299 Score: 202
Period size: 38 Copynumber: 4.5 Consensus size: 38
74731118 GAATCCAGTC
* *
74731128 ACCAGCACAAAACCTGCGGGACTTTAAGCTC-GAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCAG-ATATAAT
* *
74731168 ACCAGCACTAAGCCTGCGGGATTTAACCCTGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
* * * *
74731206 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
* *
74731244 ACCAGCACAAAGCCTGTGGGATTGAACCCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
* *
74731282 ACCAACACATAGCCTGCG
1 ACCAGCACAAAGCCTGCG
74731300 TGTCTTTAAG
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 90 0.78
39 6 0.05
40 19 0.17
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:74737806 original size:28 final size:28
Alignment explanation
Indices: 74737760--74737837 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
74737750 CACAAAACAC
* *
74737760 AATATTTTATTCAACATAATATTGACA-T
1 AATATTTTATTTAAAATAATATTGA-ATT
74737788 AATATTTTATTTAAAATAATATTGAATT
1 AATATTTTATTTAAAATAATATTGAATT
* * *
74737816 AA-ATTATGTTTAATATAATATT
1 AATATTTTATTTAAAATAATATT
74737838 TAACCAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
27 18 0.41
28 26 0.59
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (28 bp):
AATATTTTATTTAAAATAATATTGAATT
Found at i:74737906 original size:17 final size:17
Alignment explanation
Indices: 74737884--74737941 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
74737874 TTCAACTTAG
74737884 TATTCTGTTATTTTTGT
1 TATTCTGTTATTTTTGT
* *
74737901 TATTCTGTTA-CTTAG-
1 TATTCTGTTATTTTTGT
74737916 TATTCTGTTATTTTTGT
1 TATTCTGTTATTTTTGT
74737933 TATTCTGTT
1 TATTCTGTT
74737942 GAAAATGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
15 10 0.29
16 6 0.17
17 19 0.54
ACGTcount: A:0.14, C:0.09, G:0.12, T:0.66
Consensus pattern (17 bp):
TATTCTGTTATTTTTGT
Found at i:74737914 original size:32 final size:32
Alignment explanation
Indices: 74737878--74737941 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
74737868 TTTTCTTTCA
74737878 ACTTAGTATTCTGTTATTTTTGTTATTCTGTT
1 ACTTAGTATTCTGTTATTTTTGTTATTCTGTT
74737910 ACTTAGTATTCTGTTATTTTTGTTATTCTGTT
1 ACTTAGTATTCTGTTATTTTTGTTATTCTGTT
74737942 GAAAATGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.09, G:0.12, T:0.62
Consensus pattern (32 bp):
ACTTAGTATTCTGTTATTTTTGTTATTCTGTT
Found at i:74737921 original size:15 final size:15
Alignment explanation
Indices: 74737878--74737925 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
74737868 TTTTCTTTCA
74737878 ACTTAGTATTCTGTT
1 ACTTAGTATTCTGTT
* *
74737893 ATTTTTGTTATTCTGTT
1 A-CTTAG-TATTCTGTT
74737910 ACTTAGTATTCTGTT
1 ACTTAGTATTCTGTT
74737925 A
1 A
74737926 TTTTTGTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 11 0.41
16 6 0.22
17 10 0.37
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.58
Consensus pattern (15 bp):
ACTTAGTATTCTGTT
Found at i:74741049 original size:95 final size:95
Alignment explanation
Indices: 74740886--74741088 Score: 289
Period size: 95 Copynumber: 2.1 Consensus size: 95
74740876 GGAGGAAGTG
* *
74740886 TACGGCCTGTAGCAATCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCCAT
1 TACGGCCTGTAGCAATCCTGTATAAGGCTTTCAGCCTTTCTGCAATACTTATGGCTTACAGCCAT
*
74740951 TCTGTTAACTGGCAGCGTTGCTGCGATATT
66 TCTGTTAACTGGCAGCGTTGCTACGATATT
** * * * * *
74740981 TACGGCCTGTAGCCGTCCTGTATAAGGTTTTTAGCCTTTTTGTAATACTTATGGCTTACAGCCGT
1 TACGGCCTGTAGCAATCCTGTATAAGGCTTTCAGCCTTTCTGCAATACTTATGGCTTACAGCCAT
*
74741046 TCTGTTAACTGGTAGCGTTGCTACGATATT
66 TCTGTTAACTGGCAGCGTTGCTACGATATT
* *
74741076 TATGGCCTTTAGC
1 TACGGCCTGTAGC
74741089 TTTCCTATCT
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (95 bp):
TACGGCCTGTAGCAATCCTGTATAAGGCTTTCAGCCTTTCTGCAATACTTATGGCTTACAGCCAT
TCTGTTAACTGGCAGCGTTGCTACGATATT
Found at i:74741290 original size:27 final size:27
Alignment explanation
Indices: 74741259--74741311 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
74741249 GCATCTGATA
*
74741259 CTGATTCTG-TACTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGC-TAGGCCCAC
74741286 CTGATTCTGTTAATGGGCTAGGCCCA
1 CTGATTCTGTTAATGGGCTAGGCCCA
74741312 ACTATTACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAGGCCCAC
Found at i:74743752 original size:39 final size:39
Alignment explanation
Indices: 74743708--74743950 Score: 279
Period size: 39 Copynumber: 6.0 Consensus size: 39
74743698 ATTATATTAT
* * *
74743708 CAGCACAAAGCATGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
74743747 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
74743786 CAGCACGAAGCTTGCGGGACTTTGGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
74743825 CAGCACGAAGCCTGCAGGATTTTAGTCCGGATACATTTCCATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGAT--A----C----ATTTC
*
74743874 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
74743913 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74743951 TCAGTGTCTT
Statistics
Matches: 174, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
39 137 0.79
41 1 0.01
43 1 0.01
45 1 0.01
47 1 0.01
49 33 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:74743898 original size:49 final size:49
Alignment explanation
Indices: 74743820--74743914 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
74743810 GCCTGGATAC
* *
74743820 ATTTCCAGCACGAAGCCTGCAGGATTTTAGTCCGGATACATTTCCATAT
1 ATTTCCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCCATAT
**
74743869 ATTTCCAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTCCA
1 ATTTCCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCCA
74743915 GCACGAAGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (49 bp):
ATTTCCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCCATAT
Found at i:74743937 original size:88 final size:88
Alignment explanation
Indices: 74743781--74743950 Score: 270
Period size: 88 Copynumber: 1.9 Consensus size: 88
74743771 GCCCGGATAC
* * * *
74743781 ATTTCCAGCACGAAGCTTGCGGGACTTTGGCCTGGATACATTTCCAGCACGAAGCCTGCAGGATT
1 ATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCAGGACT
74743846 TTAGTCC-GGATACATTTCCATAT
66 TTAG-CCTGGATACATTTCCATAT
* *
74743869 ATTTCCAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACT
1 ATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCAGGACT
74743934 TTAGCCTGGATACATTT
66 TTAGCCTGGATACATTT
74743951 TCAGTGTCTT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
87 2 0.03
88 73 0.97
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (88 bp):
ATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCAGGACT
TTAGCCTGGATACATTTCCATAT
Found at i:74744921 original size:45 final size:45
Alignment explanation
Indices: 74744869--74744957 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
74744859 ATTTAGTCCT
*
74744869 TAATACACATTTTTATCAAAAATCACTTAATCAAACATGAAAATG
1 TAATACACATTTTTATCAAAAATCACTTAATCAAACATAAAAATG
74744914 TAATACACATTTTTATCAAAAATCACTTAATCAAACATAAAAAT
1 TAATACACATTTTTATCAAAAATCACTTAATCAAACATAAAAAT
74744958 CAAACATCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.31
Consensus pattern (45 bp):
TAATACACATTTTTATCAAAAATCACTTAATCAAACATAAAAATG
Found at i:74752645 original size:56 final size:56
Alignment explanation
Indices: 74752559--74752790 Score: 455
Period size: 56 Copynumber: 4.1 Consensus size: 56
74752549 TATTAGTTTA
*
74752559 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
74752615 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
74752671 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
74752727 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
74752783 TTGCCCAT
1 TTGCCCAT
74752791 CATCCCTTGT
Statistics
Matches: 175, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 175 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:74760462 original size:39 final size:39
Alignment explanation
Indices: 74760408--74760527 Score: 195
Period size: 39 Copynumber: 3.1 Consensus size: 39
74760398 ATTATATTAT
* *
74760408 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
74760447 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
74760486 CAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
74760525 CAG
1 CAG
74760528 TGTCTTGCAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:74764044 original size:42 final size:41
Alignment explanation
Indices: 74763923--74764086 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 41
74763913 TACTGTACCA
* *
74763923 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCATATCG
* * * *
74763965 ATGCCAATAGCCTAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATG-AATCTCATATCG
* * * *
74764008 ATGCCATATCTCAAATATGGTCTTATATGAATTCTCATACCG
1 ATGCCATATCCCAGATATGGTCTTACATGAA-TCTCATATCG
* * * *
74764050 ATGGCATAACCCATATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCA
74764087 GTAACCCTAA
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.02
42 59 0.60
43 37 0.38
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATCG
Found at i:74765122 original size:13 final size:13
Alignment explanation
Indices: 74765104--74765149 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
74765094 CCAAACGTCA
74765104 AAATTTTTGAACG
1 AAATTTTTGAACG
*
74765117 AAATTTTCATG--CA
1 AAATTTT--TGAACG
74765130 AAATTTTTGAACG
1 AAATTTTTGAACG
74765143 AAATTTT
1 AAATTTT
74765150 CATGAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 2 0.07
13 23 0.85
15 2 0.07
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (13 bp):
AAATTTTTGAACG
Found at i:74765131 original size:26 final size:26
Alignment explanation
Indices: 74765102--74765153 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
74765092 GCCCAAACGT
74765102 CAAAATTTTTGAACGAAATTTTCATG
1 CAAAATTTTTGAACGAAATTTTCATG
74765128 CAAAATTTTTGAACGAAATTTTCATG
1 CAAAATTTTTGAACGAAATTTTCATG
74765154 AAATCATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
CAAAATTTTTGAACGAAATTTTCATG
Found at i:74773925 original size:40 final size:40
Alignment explanation
Indices: 74773870--74774054 Score: 300
Period size: 40 Copynumber: 4.6 Consensus size: 40
74773860 CGGATGATAA
* * *
74773870 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
74773910 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
74773950 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
74773990 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
74774031 -CGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74774055 AGCAAGTAGC
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:74783859 original size:12 final size:12
Alignment explanation
Indices: 74783837--74783874 Score: 67
Period size: 12 Copynumber: 3.1 Consensus size: 12
74783827 TAATTAAATG
74783837 AATTAAAAAGCCA
1 AATT-AAAAGCCA
74783850 AATTAAAAGCCA
1 AATTAAAAGCCA
74783862 AATTAAAAGCCA
1 AATTAAAAGCCA
74783874 A
1 A
74783875 TTGTTGCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.61, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:74784809 original size:43 final size:43
Alignment explanation
Indices: 74784711--74784827 Score: 157
Period size: 43 Copynumber: 2.7 Consensus size: 43
74784701 TGGTGTCACT
* *
74784711 GAGATTACGTGTAAGACCATATCTGGGATA-TGGCGTCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATTGGCATCGATAC
* * *
74784753 GAGACGT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATATTGGCATCGATAC
*
74784796 GAGATTACATGTAAGACCATATCTGGGATATT
1 GAGATTACGTGTAAGACCATATCTGGGATATT
74784828 ACATTGGTAC
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.41
43 37 0.59
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (43 bp):
GAGATTACGTGTAAGACCATATCTGGGATATTGGCATCGATAC
Found at i:74788580 original size:68 final size:65
Alignment explanation
Indices: 74788505--74788652 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 65
74788495 CATCATGTGT
* * * *
74788505 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCAT
74788569 GTAG
62 GTAG
* * * *
74788573 ACAAGAGAGCTACTGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAACGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGGTG-A-GACACCATGT
74788638 AG
64 AG
74788640 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
74788653 GAGATAAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 27 0.39
65 3 0.04
66 1 0.01
67 25 0.36
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCATGTAG
Found at i:74788610 original size:64 final size:64
Alignment explanation
Indices: 74788529--74788700 Score: 188
Period size: 67 Copynumber: 2.7 Consensus size: 64
74788519 AGACATTATG
* * *
74788529 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACTG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTAC-GAGATAA
* * * * *
74788593 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAACGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG---TACACCATGTAGACAAGAGAGCTACGAGAT
74788658 AA
63 AA
* *
74788660 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGT
74788701 GTACAAAAGA
Statistics
Matches: 89, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
63 8 0.09
64 27 0.30
66 23 0.26
67 29 0.33
68 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74792963 original size:43 final size:43
Alignment explanation
Indices: 74792915--74793037 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 43
74792905 TACATGAATC
* *
74792915 GCATCCATCATGAACTCAGATCACTCAACGAGCTCGGATGCTA
1 GCATCCATCATGAACTCGGACCACTCAACGAGCTCGGATGCTA
* * * *
74792958 GCATCCATAATGAACTTGGACCTCTCAATGAGCTCGGATGCTA
1 GCATCCATCATGAACTCGGACCACTCAACGAGCTCGGATGCTA
* * *
74793001 -CATACC-TCACGAACCCGGACCACTCAACGAGTTCGGA
1 GCAT-CCATCATGAACTCGGACCACTCAACGAGCTCGGA
74793038 CTTCTTAGTT
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 27 0.41
43 39 0.59
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (43 bp):
GCATCCATCATGAACTCGGACCACTCAACGAGCTCGGATGCTA
Found at i:74793037 original size:42 final size:43
Alignment explanation
Indices: 74792936--74793037 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
74792926 GAACTCAGAT
* **
74792936 CACTCAACGAGCTCGGATGCTAGCATCCATAATGAACTTGGAC
1 CACTCAACGAGCTCGGATGCTAGCATCCATAACGAACCCGGAC
* * *
74792979 CTCTCAATGAGCTCGGATGCTA-CATACC-TCACGAACCCGGAC
1 CACTCAACGAGCTCGGATGCTAGCAT-CCATAACGAACCCGGAC
*
74793021 CACTCAACGAGTTCGGA
1 CACTCAACGAGCTCGGA
74793038 CTTCTTAGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (43 bp):
CACTCAACGAGCTCGGATGCTAGCATCCATAACGAACCCGGAC
Found at i:74794462 original size:46 final size:46
Alignment explanation
Indices: 74794395--74794570 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
74794385 TATTTGGGCA
74794395 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74794441 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
74794488 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74794534 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74794571 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:74794550 original size:93 final size:93
Alignment explanation
Indices: 74794391--74794563 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
74794381 GGGATATTTG
* * *
74794391 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74794456 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
74794484 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
74794549 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
74794564 CTTATGGGTG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74798132 original size:28 final size:28
Alignment explanation
Indices: 74798100--74798183 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
74798090 AACTGTGATC
74798100 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74798128 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
74798150 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74798178 ACGTGT
1 ACGTGT
74798184 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74798173 original size:50 final size:49
Alignment explanation
Indices: 74798052--74798241 Score: 227
Period size: 50 Copynumber: 3.8 Consensus size: 49
74798042 TGAGGTCGCA
* * * * *
74798052 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* **
74798103 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
74798153 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
74798202 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
74798242 CTTTGGCTAC
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
49 42 0.35
50 45 0.38
51 33 0.28
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:74801169 original size:47 final size:47
Alignment explanation
Indices: 74801091--74801385 Score: 410
Period size: 47 Copynumber: 6.2 Consensus size: 47
74801081 CCCTTCGGGA
* * * * * **
74801091 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74801138 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
74801185 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74801232 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74801281 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
74801328 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
74801377 CTTATCACA
1 CTTATCACA
74801386 ATTTAGAATT
Statistics
Matches: 220, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 133 0.60
49 87 0.40
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:74801286 original size:96 final size:96
Alignment explanation
Indices: 74801091--74801385 Score: 450
Period size: 96 Copynumber: 3.1 Consensus size: 96
74801081 CCCTTCGGGA
** * * * * ** * *
74801091 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
74801154 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
74801185 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
74801250 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
74801281 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
74801346 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74801377 CTTATCACA
1 CTTATCACA
74801386 ATTTAGAATT
Statistics
Matches: 182, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
94 44 0.24
96 138 0.76
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74805687 original size:17 final size:17
Alignment explanation
Indices: 74805665--74805700 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
74805655 TAGAATCGGG
*
74805665 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
74805682 TTGAGAAAATTAATTAA
1 TTGAGAAAATTAATTAA
74805699 TT
1 TT
74805701 AATATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:74809605 original size:27 final size:27
Alignment explanation
Indices: 74809567--74809620 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
74809557 AAAAAAAATA
74809567 GTAATTATATATAATATTGCATTCATT
1 GTAATTATATATAATATTGCATTCATT
74809594 GTAATTATATATAATATTGCATTCATT
1 GTAATTATATATAATATTGCATTCATT
74809621 CACTTGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (27 bp):
GTAATTATATATAATATTGCATTCATT
Found at i:74810487 original size:26 final size:27
Alignment explanation
Indices: 74810458--74810532 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 27
74810448 ATCACCCCAA
**
74810458 TACCCTCT-GTAAAATTTAGATGATTT
1 TACCCTCTCGTAAAATTTAGACAATTT
*
74810484 TACCC-CTCGTATAATTTAGACAATTT
1 TACCCTCTCGTAAAATTTAGACAATTT
* *
74810510 TA-CCTCTCATAAAATTTAAACAA
1 TACCCTCTCGTAAAATTTAGACAA
74810533 AATTCATTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 4 0.10
26 37 0.90
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCTCGTAAAATTTAGACAATTT
Found at i:74812940 original size:37 final size:37
Alignment explanation
Indices: 74812881--74812989 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
74812871 AGCTCAGATG
** *
74812881 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
74812918 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74812955 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
74812990 ATATATATTT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74813193 original size:48 final size:48
Alignment explanation
Indices: 74813138--74813980 Score: 1220
Period size: 48 Copynumber: 17.1 Consensus size: 48
74813128 ACACATCGCC
*
74813138 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
74813186 TACATATTTCACACTAGCCATTCGGCTTTACCACAAATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
74813236 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
74813284 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
74813334 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * * *
74813386 TATATATTTCGCATTATCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74813434 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74813482 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
74813530 TATATACATTTCACATTACCCATTCGGCTTTACCACATATACATATCTCATA
1 TACAT--ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* ** *
74813582 TATATATTTTGCATTACCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74813630 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
74813682 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74813730 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
74813778 TACATATTTCACATTAGCCATTCGGCTTTACTACATAGACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
74813826 TATATACATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATA
1 TACAT--ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
74813878 TATATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
74813928 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74813976 TACAT
1 TACAT
74813981 CAATTTCAGC
Statistics
Matches: 735, Mismatches: 40, Indels: 40
0.90 0.05 0.05
Matches are distributed among these distances:
48 333 0.45
49 2 0.00
50 295 0.40
52 105 0.14
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:74813509 original size:148 final size:145
Alignment explanation
Indices: 74813138--74813973 Score: 1330
Period size: 148 Copynumber: 5.6 Consensus size: 145
74813128 ACACATCGCC
* *
74813138 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
74813203 CCATTCGGCTTTACCACAAATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-ACCATTCGGCTTTACC
*
74813268 ACATATGCATATCTCA
130 ACATATACATATCTCA
*
74813284 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
* *
74813349 AACCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCGCATTATCCATTCGGCTT
64 AGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACATTA-CCATTCGGCTT
*
74813414 TACCACATATGCATATCTCA
126 TACCACATATACATATCTCA
74813434 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
74813499 CCATTCGGCTTTACCACATATACATATCTCATATATACATTTCACATTACCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTA-CCATTCGGCTTTACC
74813564 ACATATACATATCTCATA
130 ACATATACATATCTC--A
* ** *
74813582 TATATATTTTGCATTACCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
74813647 CCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCGCATTAGCCATTCGGCTTTA
66 CCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACATTA-CCATTCGGCTTTA
74813712 CCACATATACATATCTCA
128 CCACATATACATATCTCA
74813730 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * *
74813795 CCATTCGGCTTTACTACATAGACATATCTCATATATACATTTCACATTAACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-ACCATTCGGCTTTACC
74813860 ACATATACATATCTCATA
130 ACATATACATATCTC--A
* * *
74813878 TATATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
74813943 AGCCATTCGGCTTTACCACATATACGTATCT
64 AGCCATTCGGCTTTACCACATATACATATCT
74813974 TATACATCAA
Statistics
Matches: 643, Mismatches: 33, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
146 138 0.21
147 1 0.00
148 318 0.49
149 1 0.00
150 185 0.29
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (145 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTACCATTCGGCTTTACCA
CATATACATATCTCA
Found at i:74817131 original size:43 final size:42
Alignment explanation
Indices: 74817083--74817179 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
74817073 TATCCTAGAT
* *
74817083 ATGGTCTTACATGTTAT-CACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATGC-CATAT-GATGCCAATGTCCCAGAC
*
74817126 ATGGTCTTACACGTAATGCTATATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATGCCATATGATGCCAATGTCCCAGAC
74817168 ATGGTCTTACAC
1 ATGGTCTTACAC
74817180 ATAACCATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
42 30 0.60
43 19 0.38
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGTAATGCCATATGATGCCAATGTCCCAGAC
Found at i:74821691 original size:18 final size:18
Alignment explanation
Indices: 74821668--74821712 Score: 74
Period size: 18 Copynumber: 2.5 Consensus size: 18
74821658 ATTTAATCTG
74821668 TATAGGGCCCACGAGCCC
1 TATAGGGCCCACGAGCCC
74821686 TATAGGGCCCACGAGCCC
1 TATAGGGCCCACGAGCCC
74821704 -ATTAGGGCC
1 TA-TAGGGCC
74821713 ACATGGCCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.22, C:0.36, G:0.29, T:0.13
Consensus pattern (18 bp):
TATAGGGCCCACGAGCCC
Found at i:74822837 original size:29 final size:29
Alignment explanation
Indices: 74822784--74822843 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
74822774 AAAAGAAAAA
* *
74822784 TCCCAAAATGTTACAAATTCGAAAAACAC
1 TCCCAAAATGTTACAAAATCAAAAAACAC
*
74822813 TCCCAAAATGTTACAAACAT-AAAAAATAC
1 TCCCAAAATGTTACAAA-ATCAAAAAACAC
74822842 TC
1 TC
74822844 ACTTCTCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.22
Consensus pattern (29 bp):
TCCCAAAATGTTACAAAATCAAAAAACAC
Found at i:74826138 original size:21 final size:21
Alignment explanation
Indices: 74826114--74826153 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
74826104 TTCATACCTC
74826114 CAAATCATTGTACATTTTCTT
1 CAAATCATTGTACATTTTCTT
74826135 CAAATCATTGTACATTTTC
1 CAAATCATTGTACATTTTC
74826154 GTACTTCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (21 bp):
CAAATCATTGTACATTTTCTT
Found at i:74837928 original size:31 final size:31
Alignment explanation
Indices: 74837890--74837952 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
74837880 AACACGGGAG
*
74837890 TGTGTCTTGGCCGTGTGAAACCTGGACCTAA
1 TGTGTCTTGGCCGTGTGAAACCTAGACCTAA
74837921 TGTGTCTTGGCCGTGTGAAACCTAGACCTAA
1 TGTGTCTTGGCCGTGTGAAACCTAGACCTAA
74837952 T
1 T
74837953 TTCAAATTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (31 bp):
TGTGTCTTGGCCGTGTGAAACCTAGACCTAA
Found at i:74844351 original size:40 final size:40
Alignment explanation
Indices: 74844281--74844457 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
74844271 ACCCAAGTAT
*
74844281 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
74844320 CTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
74844360 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
74844400 CTCCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
74844440 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
74844458 TTATCATCCG
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 100 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:74848608 original size:43 final size:43
Alignment explanation
Indices: 74848547--74848724 Score: 137
Period size: 43 Copynumber: 4.2 Consensus size: 43
74848537 ATAGGATTTC
* **
74848547 TGATATGTGTTCTCGTGTAAGAAGACATCTGGGATGTTGGCAT
1 TGATATGTGTTCTCGTGTAAGAACACATCTGGGACATTGGCAT
* *
74848590 TGATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCAT
1 TGATATGTGTTCTCGTGTAAGAACACATCTGGGACATTGGCAT
* * * *** * *
74848633 CGATATGTGATT-ACGTGTAAGACCTTGTATGGGACAGTGGCAT
1 TGATATGTG-TTCTCGTGTAAGAACACATCTGGGACATTGGCAT
** * * * * *
74848676 CAATATGTGATT-ACATGTAAGACCACATTTGGGACGTTGGCAT
1 TGATATGTG-TTCTCGTGTAAGAACACATCTGGGACATTGGCAT
74848719 TG-TATG
1 TGATATG
74848725 ATATGTGTGA
Statistics
Matches: 113, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
42 4 0.04
43 107 0.95
44 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (43 bp):
TGATATGTGTTCTCGTGTAAGAACACATCTGGGACATTGGCAT
Found at i:74854535 original size:37 final size:37
Alignment explanation
Indices: 74854462--74854540 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
74854452 TTATTACGAA
* * * *
74854462 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
74854499 GTCTTACCCAGACAAAATCCCCATACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
74854536 GTCTT
1 GTCTT
74854541 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:74854737 original size:47 final size:47
Alignment explanation
Indices: 74854661--74854771 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
74854651 CTTCGGGACT
* *
74854661 TATCACATTTATACACTTTCACATCCATCACATCGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
74854708 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
74854755 TATCACATATATACACT
1 TATCACATATATACACT
74854772 GTCTTGGCTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:74855050 original size:47 final size:47
Alignment explanation
Indices: 74854981--74855176 Score: 374
Period size: 47 Copynumber: 4.2 Consensus size: 47
74854971 CCGTTAATTT
*
74854981 GGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
74855028 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
74855075 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
74855122 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
74855169 GGTCATTA
1 GGCCATTA
74855177 CGCCATACTA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
Found at i:74867146 original size:34 final size:34
Alignment explanation
Indices: 74867108--74867175 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
74867098 GCAGTACTAA
*
74867108 AATTTAACTTCGTACCCAAAGCCTCTTGTAATTT
1 AATTTAACTTCATACCCAAAGCCTCTTGTAATTT
74867142 AATTTAACTTCATACCCAAAGCCTCTTGTAATTT
1 AATTTAACTTCATACCCAAAGCCTCTTGTAATTT
74867176 CTTTCAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (34 bp):
AATTTAACTTCATACCCAAAGCCTCTTGTAATTT
Found at i:74873896 original size:27 final size:26
Alignment explanation
Indices: 74873857--74874248 Score: 333
Period size: 27 Copynumber: 14.7 Consensus size: 26
74873847 TAATAAAGAG
* *
74873857 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
74873884 AAGTTATCGAAATACCCTCGA-TTGTG
1 AAATTA-CGAAATACCCTCGATTTGTA
*
74873910 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* * *
74873937 AAATTACTGGAAT-CCCCCGATTTGTG
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
74873963 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* * *
74873990 AAGTTACCAAAATACCCCCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
74874017 AAATTACCGAAATA-CCTTGA-TTGTG
1 AAATTA-CGAAATACCCTCGATTTGTA
* * *
74874042 AGATTACTAAAATACCCTCAATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
74874069 AAATTACCGAAATACCCTCGAGTTGTG
1 AAATTA-CGAAATACCCTCGATTTGTA
* **
74874096 AAATTATCGAAACACCCTTAATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* * *
74874123 AAATTATCGAAATATCCTTGATTTGTT
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
74874150 AAATTACTGAAATACCATCAATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
74874177 AAATTACTGAAATACCCTCAATTTATA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
74874204 AAATTACTGAAACACCCCCGATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
74874231 AAATTATCGAAATACCCT
1 AAATTA-CGAAATACCCT
74874249 TGTAGTGTAA
Statistics
Matches: 296, Mismatches: 59, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
24 1 0.00
25 14 0.05
26 50 0.17
27 229 0.77
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGATTTGTA
Found at i:74874023 original size:54 final size:54
Alignment explanation
Indices: 74873857--74874248 Score: 379
Period size: 54 Copynumber: 7.3 Consensus size: 54
74873847 TAATAAAGAG
* * *
74873857 AAATTACCAAAATACCCCCGATTTGTAAAGTTA-TCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAGTTACT-GAAATACCCTCGATTTGTA
* * * * *
74873910 AAATTACCGAAATACCCTCAATTTGTAAAATTACTGGAAT-CCCCCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAGTTACTGAAATACCCTCGATTTGTA
* * ** *
74873963 AAATTACCAAAACACCCTCGATTTGTAAAGTTACCAAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAGTTACTGAAATACCCTCGATTTGTA
* * * *
74874017 AAATTACCGAAATA-CCTTGA-TTGT-GAGATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAG-TTACTGAAATACCCTCGATTTGTA
* * **
74874069 AAATTACCGAAATACCCTCGAGTTGTGAAA-TTA-TCGAAACACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGT-AAAGTTACT-GAAATACCCTCGATTTGTA
* * * * *
74874123 AAATTATCGAAATATCCTTGATTTGTTAAA-TTACTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTG-TAAAGTTACTGAAATACCCTCGATTTGTA
* * * * * *
74874177 AAATTACTGAAATACCCTCAATTTATAAAATTACTGAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAGTTACTGAAATACCCTCGATTTGTA
*
74874231 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
74874249 TGTAGTGTAA
Statistics
Matches: 282, Mismatches: 45, Indels: 23
0.81 0.13 0.07
Matches are distributed among these distances:
51 2 0.01
52 45 0.16
53 86 0.30
54 146 0.52
55 2 0.01
56 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTAAAGTTACTGAAATACCCTCGATTTGTA
Found at i:74874098 original size:133 final size:133
Alignment explanation
Indices: 74873857--74874236 Score: 483
Period size: 133 Copynumber: 2.8 Consensus size: 133
74873847 TAATAAAGAG
* * *
74873857 AAATTACCAAAATACCCCCGATTTGTAAAGTTATCGAAATACCCTCGATTGTGAAATTACCGAAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAATA-CCTCGATTGTGAAATTACTGAAA
* *
74873922 TACCCTCAATTTGTAAAATTACTGGAAT-CCCCCGATTTGTGAAATTACCAAAACACCCTCGATT
65 TACCCTCAATTTGTAAAATTACTGAAATACCCCCGATTTGTGAAATTACCAAAACACCCTCAATT
74873986 TGTA
130 TGTA
* * * *
74873990 AAGTTACCAAAATACCCCCGATTTGTAAAATTACCGAAATACCTTGATTGTGAGATTACTAAAAT
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAATACCTCGATTGTGAAATTACTGAAAT
* * * * * *
74874055 ACCCTCAATTTGTAAAATTACCGAAATACCCTCGAGTTGTGAAATTATCGAAACACCCTTAATTT
66 ACCCTCAATTTGTAAAATTACTGAAATACCCCCGATTTGTGAAATTACCAAAACACCCTCAATTT
74874120 GTA
131 GTA
* * * ** * * * *
74874123 AAATTATCGAAATATCCTTGATTTGTTAAATTACTGAAATACCATCAATTTGTAAAATTACTGAA
1 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAATACC-TCGA-TTGTGAAATTACTGAA
* * *
74874188 ATACCCTCAATTTATAAAATTACTGAAACACCCCCGATTTGTAAAATTA
64 ATACCCTCAATTTGTAAAATTACTGAAATACCCCCGATTTGTGAAATTA
74874237 TCGAAATACC
Statistics
Matches: 210, Mismatches: 34, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
132 45 0.21
133 107 0.51
134 2 0.01
135 56 0.27
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (133 bp):
AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAATACCTCGATTGTGAAATTACTGAAAT
ACCCTCAATTTGTAAAATTACTGAAATACCCCCGATTTGTGAAATTACCAAAACACCCTCAATTT
GTA
Found at i:74874257 original size:27 final size:27
Alignment explanation
Indices: 74874227--74874301 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
74874217 ACCCCCGATT
74874227 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
** * *
74874254 TGTAAAATTCCCAAAATACCATTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
74874281 TGTAAAATGATCGACATACCC
1 TGTAAAATTATCGAAATACCC
74874302 CTATAAAGTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:74874288 original size:108 final size:106
Alignment explanation
Indices: 74873857--74874275 Score: 396
Period size: 106 Copynumber: 3.9 Consensus size: 106
74873847 TAATAAAGAG
* * * * * * *
74873857 AAATTACCAAAATACCCCCGATTTGTAAAGTTA-TCGAAATACCCTCGA-TTGTGAAATTACCGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACT-GAAACACCCCCGATTTGTAAAATTATCGA
** ** ** * *
74873920 AATACCCTCAATTTGTAAAATTACTGGAAT-CCCCCGATTTGTG
65 AATA-CCTTGA-TTGTAAAATTACTAAAATACCATCAATTTGTA
* * * ** * *
74873963 AAATTACCAAAACACCCTCGATTTGTAAAGTTACCAAAATACCCCCGATTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAACACCCCCGATTTGTAAAATTATCGAA
* * *
74874028 ATACCTTGATTGTGAGATTACTAAAATACCCTCAATTTGTA
66 ATACCTTGATTGTAAAATTACTAAAATACCATCAATTTGTA
* * ***
74874069 AAATTACCGAAATACCCTCGAGTTGTGAAATTA-TCGAAACACCCTTAATTTGTAAAATTATCGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACT-GAAACACCCCCGATTTGTAAAATTATCGA
* *
74874133 AATATCCTTGATTTGTTAAATTACTGAAATACCATCAATTTGTA
65 AATA-CCTTGA-TTGTAAAATTACTAAAATACCATCAATTTGTA
* * *
74874177 AAATTACTGAAATACCCTCAATTTATAAAATTACTGAAACACCCCCGATTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAACACCCCCGATTTGTAAAATTATCGAA
* * *
74874242 ATACCCTTGTAGTGTAAAATTCCCAAAATACCAT
66 ATA-CCTTG-ATTGTAAAATTACTAAAATACCAT
74874276 TGTAGTGTAA
Statistics
Matches: 260, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
105 14 0.05
106 111 0.43
107 24 0.09
108 109 0.42
109 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (106 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAACACCCCCGATTTGTAAAATTATCGAA
ATACCTTGATTGTAAAATTACTAAAATACCATCAATTTGTA
Found at i:74878399 original size:46 final size:46
Alignment explanation
Indices: 74878332--74878503 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
74878322 TGTAACCCGC
* *
74878332 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
* * * * *
74878378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACG-TTCGCAT
* * * *
74878424 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
74878471 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
74878504 TGGATTCTCA
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 65 0.64
47 33 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
Found at i:74878455 original size:93 final size:93
Alignment explanation
Indices: 74878340--74878508 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
74878330 GCCCATAAGT
* *
74878340 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74878405 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
74878433 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74878498 CGAGTTTGGAT
66 CGAGTTCGGAT
74878509 TCTCAACCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74878639 original size:30 final size:30
Alignment explanation
Indices: 74878603--74878662 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
74878593 ACCATCTTCT
* *
74878603 ACGGAATGCCGTTACCGATACTCGGTAGTA
1 ACGGAATGCCGATACCGATACTCGATAGTA
74878633 ACGGAATGCCGATACCGATACTCGATAGTA
1 ACGGAATGCCGATACCGATACTCGATAGTA
74878663 TTTCACATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (30 bp):
ACGGAATGCCGATACCGATACTCGATAGTA
Found at i:74888321 original size:40 final size:40
Alignment explanation
Indices: 74888235--74888328 Score: 98
Period size: 40 Copynumber: 2.4 Consensus size: 40
74888225 TTACGATGTT
*** *
74888235 TGGCACTTAGTGTGCGTTTTGAAATAGCTTTGGCTATCTA
1 TGGCACTTAGTGTGCGAAATGAAATAGCTTTGGCTATATA
** * * *
74888275 CAGCACTTAGTGTGCGAAATGAAATAGCTTTGGTTTTATG
1 TGGCACTTAGTGTGCGAAATGAAATAGCTTTGGCTATATA
*
74888315 TGGCACTAAGTGTG
1 TGGCACTTAGTGTG
74888329 AGATGCCGAG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAAATGAAATAGCTTTGGCTATATA
Found at i:74896661 original size:31 final size:31
Alignment explanation
Indices: 74896623--74896683 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
74896613 AAACTGTCAC
*
74896623 ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
1 ACGCCCGTGTAGATGGGTCATGTGGATTCAA
74896654 ACGCCCGTGTAGATGGGTCATGTGGATTCA
1 ACGCCCGTGTAGATGGGTCATGTGGATTCA
74896684 CACACCTGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (31 bp):
ACGCCCGTGTAGATGGGTCATGTGGATTCAA
Found at i:74906001 original size:12 final size:12
Alignment explanation
Indices: 74905984--74906009 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74905974 CCACAAACTC
74905984 TCTTCCTCTCAT
1 TCTTCCTCTCAT
74905996 TCTTCCTCTCAT
1 TCTTCCTCTCAT
74906008 TC
1 TC
74906010 ATTCATAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.42, G:0.00, T:0.50
Consensus pattern (12 bp):
TCTTCCTCTCAT
Found at i:74906807 original size:21 final size:20
Alignment explanation
Indices: 74906781--74906820 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
74906771 GCATTACGGT
74906781 AAGTTGGGCCTCAAGGGGCTG
1 AAGTTGGGCCT-AAGGGGCTG
*
74906802 AAGTTGGGCCTAATGGGCT
1 AAGTTGGGCCTAAGGGGCT
74906821 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.17, G:0.40, T:0.23
Consensus pattern (20 bp):
AAGTTGGGCCTAAGGGGCTG
Found at i:74907119 original size:25 final size:25
Alignment explanation
Indices: 74907090--74907137 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74907080 TTATATTATG
* * *
74907090 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
74907115 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
74907138 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:74907207 original size:9 final size:9
Alignment explanation
Indices: 74907195--74907240 Score: 65
Period size: 9 Copynumber: 4.9 Consensus size: 9
74907185 TGATTTGAAC
74907195 ATGATATGT
1 ATGATATGT
74907204 ATGATATGT
1 ATGATATGT
*
74907213 ATGATATGCGC
1 ATGATAT--GT
74907224 ATGATATGT
1 ATGATATGT
74907233 ATGATATG
1 ATGATATG
74907241 CACATGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 25 0.76
11 8 0.24
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (9 bp):
ATGATATGT
Found at i:74907207 original size:29 final size:29
Alignment explanation
Indices: 74907175--74907240 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
74907165 TTTGATATAC
*
74907175 ATGAT-TGATATGATTTGAACATGATATGT
1 ATGATATG-TATGATATGAACATGATATGT
**
74907204 ATGATATGTATGATATGCGCATGATATGT
1 ATGATATGTATGATATGAACATGATATGT
74907233 ATGATATG
1 ATGATATG
74907241 CACATGATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 31 0.94
30 2 0.06
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (29 bp):
ATGATATGTATGATATGAACATGATATGT
Found at i:74907215 original size:4 final size:5
Alignment explanation
Indices: 74907175--74907240 Score: 50
Period size: 5 Copynumber: 13.6 Consensus size: 5
74907165 TTTGATATAC
* * **
74907175 ATGAT -TGAT ATGAT TTGAAC ATGAT ATG-T ATGAT ATG-T ATGAT ATGCGC
1 ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT ATGAT ATGAT ATG-AT
74907224 ATGAT ATG-T ATGAT ATG
1 ATGAT ATGAT ATGAT ATG
74907241 CACATGATGT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
4 16 0.34
5 25 0.53
6 6 0.13
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:74907227 original size:20 final size:20
Alignment explanation
Indices: 74907204--74907248 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
74907194 CATGATATGT
*
74907204 ATGATATGTATGATATGCGC
1 ATGATATGTATGATATGCAC
74907224 ATGATATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
74907244 ATGAT
1 ATGAT
74907249 GTATTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (20 bp):
ATGATATGTATGATATGCAC
Found at i:74907369 original size:25 final size:26
Alignment explanation
Indices: 74907298--74907394 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
74907288 GAGGAAGTGC
*
74907298 AAAAGGGCTTATGTCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
74907324 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
74907350 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
74907375 AAACGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
74907395 ATTAAAGAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
25 33 0.49
26 35 0.51
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:74907377 original size:51 final size:51
Alignment explanation
Indices: 74907298--74907394 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
74907288 GAGGAAGTGC
* *
74907298 AAAAGGGCTTATGTCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTT-TGCCCCAGTTTATTG
*
74907350 AAAAGGGCTT-TGCCCCAGTTTACTGAAACGGGCTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTT
74907395 ATTAAAGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
50 10 0.24
51 22 0.52
52 10 0.24
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:74907880 original size:17 final size:17
Alignment explanation
Indices: 74907854--74907897 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
74907844 TTGAATAGGT
*
74907854 GTTTGGTTTTCATTAAA
1 GTTTGCTTTTCATTAAA
74907871 GTTTGCTTTTCATTAAA
1 GTTTGCTTTTCATTAAA
74907888 GTTTGCTTTT
1 GTTTGCTTTT
74907898 TTTATTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.18, C:0.09, G:0.16, T:0.57
Consensus pattern (17 bp):
GTTTGCTTTTCATTAAA
Found at i:74911201 original size:40 final size:40
Alignment explanation
Indices: 74911107--74911251 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
74911097 TACTCGAATG
* *
74911107 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
74911148 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
74911188 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
74911228 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
74911252 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:74919704 original size:47 final size:47
Alignment explanation
Indices: 74919628--74919738 Score: 150
Period size: 47 Copynumber: 2.4 Consensus size: 47
74919618 CGTCGGGACT
* * * *
74919628 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
74919675 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
74919722 TATCACATATATACACT
1 TATCACATATATACACT
74919739 GTCTTGGCTG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:74923473 original size:57 final size:58
Alignment explanation
Indices: 74923400--74923508 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
74923390 GCCCACTGAT
* * *
74923400 CGATCTCGCATACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * * *
74923457 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACAGAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
74923509 TAATCATTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:74923764 original size:40 final size:40
Alignment explanation
Indices: 74923720--74923951 Score: 320
Period size: 40 Copynumber: 5.8 Consensus size: 40
74923710 CCAGCATGAT
* * * * * *
74923720 TGCTCGTCGGGACCTAGCCCGGATATAACACCACCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
74923760 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
74923800 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
74923840 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
74923880 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
74923920 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
74923952 CTCAATTCTC
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:74925216 original size:37 final size:37
Alignment explanation
Indices: 74925166--74925244 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74925156 TTATTACGAA
* * *
74925166 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
74925203 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
74925240 GTCTT
1 GTCTT
74925245 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:74925441 original size:47 final size:47
Alignment explanation
Indices: 74925363--74925773 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
74925353 CCCTTCGGGA
* * * * * *
74925363 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74925410 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925457 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925504 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925598 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925645 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74925739 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
74925774 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74927945 original size:40 final size:40
Alignment explanation
Indices: 74927851--74927995 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
74927841 TACTCGAATG
*
74927851 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
74927892 ACATCTGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
74927932 ATATCCGAGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
74927972 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
74927996 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.67
41 27 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:74929093 original size:68 final size:68
Alignment explanation
Indices: 74928984--74929121 Score: 267
Period size: 68 Copynumber: 2.0 Consensus size: 68
74928974 CAGAGATAAT
74928984 TAGAAGTCATGCCATATATGCATAGATTCCTTTTTGAGTCTAGTTTCTATAGAAACAAACGGCAT
1 TAGAAGTCATGCCATATATGCATAGATTCCTTTTTGAGTCTAGTTTCTATAGAAACAAACGGCAT
74929049 CAG
66 CAG
74929052 TAGAAGTCATGCCATATATGCATAGATTCCTTTTTGAGTCTAGTTTCTATAGAAACAAACGGCAT
1 TAGAAGTCATGCCATATATGCATAGATTCCTTTTTGAGTCTAGTTTCTATAGAAACAAACGGCAT
*
74929117 TAG
66 CAG
74929120 TA
1 TA
74929122 TTGAAGCCCT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (68 bp):
TAGAAGTCATGCCATATATGCATAGATTCCTTTTTGAGTCTAGTTTCTATAGAAACAAACGGCAT
CAG
Found at i:74930902 original size:27 final size:28
Alignment explanation
Indices: 74930859--74930925 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
74930849 GTGGGGTGCA
*
74930859 TCGGTGTTGTTCGTAAA-GAAGA-CAGCC
1 TCGGTATT-TTCGTAAACGAAGAGCAGCC
* * *
74930886 TCGGTATTTTCGATAAACTAAGAGGATCC
1 TCGGTATTTTCG-TAAACGAAGAGCAGCC
74930915 TCGGTATTTTC
1 TCGGTATTTTC
74930926 TAAGATCGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 4 0.12
27 11 0.33
28 4 0.12
29 14 0.42
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (28 bp):
TCGGTATTTTCGTAAACGAAGAGCAGCC
Found at i:74935259 original size:25 final size:25
Alignment explanation
Indices: 74935230--74935277 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
74935220 TTATATTATG
* * *
74935230 AAAATAACTGTTTTGCCCCTAGGTA
1 AAAATAACCGTTATACCCCTAGGTA
*
74935255 AAAATGACCGTTATACCCCTAGG
1 AAAATAACCGTTATACCCCTAGG
74935278 GTTTACTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATAACCGTTATACCCCTAGGTA
Found at i:74935338 original size:20 final size:19
Alignment explanation
Indices: 74935313--74935379 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 19
74935303 ATTTTGATAT
* *
74935313 ACATGATTGATATGATTTAC
1 ACATGATTG-TATGATATGC
74935333 ACATGATATGTATGATATGC
1 ACATGAT-TGTATGATATGC
*
74935353 GCATGATTTGTATGATATGC
1 ACATGA-TTGTATGATATGC
74935373 ACATGAT
1 ACATGAT
74935380 CTATTCATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 1 0.02
20 37 0.90
21 3 0.07
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (19 bp):
ACATGATTGTATGATATGC
Found at i:74935520 original size:25 final size:25
Alignment explanation
Indices: 74935429--74935551 Score: 167
Period size: 26 Copynumber: 4.8 Consensus size: 25
74935419 GAGGAAGTGC
74935429 AAAAGGGCTTTTG-CCCAGTTTATTG
1 AAAAGGGC-TTTGCCCCAGTTTATTG
74935454 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTT-TGCCCCAGTTTATTG
* *
74935481 AAAAAGACTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
**
74935507 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
74935532 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74935552 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
25 35 0.39
26 42 0.47
27 12 0.13
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:74942281 original size:53 final size:53
Alignment explanation
Indices: 74942201--74942306 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
74942191 GGTGGTATTT
*
74942201 TTCTCTTTTTTTTTTCTTTTCTTTCTTTTCACTTGTGCCGGTTGTTCTTAAGC
1 TTCTCTTTTTTTTTTCTTTTCTTTCTTTTCACTTGTGCCGATTGTTCTTAAGC
74942254 TTCTCTTTTTTTTTTCTTTTCTTTCTTTTCACTTGTGCCGATTGTTCTTAAGC
1 TTCTCTTTTTTTTTTCTTTTCTTTCTTTTCACTTGTGCCGATTGTTCTTAAGC
74942307 AAACCCCACT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.07, C:0.21, G:0.10, T:0.62
Consensus pattern (53 bp):
TTCTCTTTTTTTTTTCTTTTCTTTCTTTTCACTTGTGCCGATTGTTCTTAAGC
Found at i:74943487 original size:25 final size:25
Alignment explanation
Indices: 74943458--74943505 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
74943448 TTATATTATG
* * *
74943458 AAAATAACTGTTTTGCCCCTAGGTA
1 AAAATAACCGTTATACCCCTAGGTA
*
74943483 AAAATGACCGTTATACCCCTAGG
1 AAAATAACCGTTATACCCCTAGG
74943506 GTTTACTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATAACCGTTATACCCCTAGGTA
Found at i:74943566 original size:20 final size:19
Alignment explanation
Indices: 74943541--74943607 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 19
74943531 ATTTTGATAT
* *
74943541 ACATGATTGATATGATTTAC
1 ACATGATTG-TATGATATGC
74943561 ACATGATATGTATGATATGC
1 ACATGAT-TGTATGATATGC
*
74943581 GCATGATTTGTATGATATGC
1 ACATGA-TTGTATGATATGC
74943601 ACATGAT
1 ACATGAT
74943608 CTATTCATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 1 0.02
20 37 0.90
21 3 0.07
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (19 bp):
ACATGATTGTATGATATGC
Found at i:74943782 original size:25 final size:26
Alignment explanation
Indices: 74943659--74943807 Score: 230
Period size: 27 Copynumber: 5.7 Consensus size: 26
74943649 GGAAGTGCAG
*
74943659 AAGGGCTTATGCCCTAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTG-AA
*
74943686 AAGGGCTTATGCCACAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTG-AA
74943713 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
74943739 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
* *
74943765 AAGAGCTT-TGCCCCAGTTTATCGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
74943790 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
74943808 ATTAAAGAGG
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 33 0.28
26 35 0.30
27 48 0.41
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTATTGAA
Found at i:74946920 original size:312 final size:312
Alignment explanation
Indices: 74946355--74946972 Score: 1218
Period size: 312 Copynumber: 2.0 Consensus size: 312
74946345 ATAAAAAAAT
74946355 AAAGATGACTTTATTTTCATGCATGTTAGCCGAAAATTAGCAAAAGAAGAAGGGTTTGAAGCTTT
1 AAAGATGACTTTATTTTCATGCATGTTAGCCGAAAATTAGCAAAAGAAGAAGGGTTTGAAGCTTT
74946420 TGTATATTCGGCACTTTGATAGCTAAATTGAGGTATGAAATTTGTTCGGTTTTTGATAATTTCTA
66 TGTATATTCGGCACTTTGATAGCTAAATTGAGGTATGAAATTTGTTCGGTTTTTGATAATTTCTA
74946485 CGTTTCTGTGATCGTTGCTTCGTGTTCTTCAAAACCCATGTCTGAATTTCTTTTTTTGTTGAAGA
131 CGTTTCTGTGATCGTTGCTTCGTGTTCTTCAAAACCCATGTCTGAATTTCTTTTTTTGTTGAAGA
74946550 TTATGAAATGTGCCATTTATGATTATATGAACTTTATGATGTTTTTATATGGAATATGAAAGATA
196 TTATGAAATGTGCCATTTATGATTATATGAACTTTATGATGTTTTTATATGGAATATGAAAGATA
* *
74946615 TGTATGAGATTATTAAGCTTTTTCTTTGAATTTTGATGAAATAGAGAAAACA
261 TGAATGAGATTATTAAGCTTTGTCTTTGAATTTTGATGAAATAGAGAAAACA
74946667 AAAGATGACTTTATTTTCATGCATGTTAGCCGAAAATTAGCAAAAGAAGAAGGGTTTGAAGCTTT
1 AAAGATGACTTTATTTTCATGCATGTTAGCCGAAAATTAGCAAAAGAAGAAGGGTTTGAAGCTTT
74946732 TGTATATTCGGCACTTTGATAGCTAAATTGAGGTATGAAATTTGTTCGGTTTTTGATAATTTCTA
66 TGTATATTCGGCACTTTGATAGCTAAATTGAGGTATGAAATTTGTTCGGTTTTTGATAATTTCTA
74946797 CGTTTCTGTGATCGTTGCTTCGTGTTCTTCAAAACCCATGTCTGAATTTCTTTTTTTGTTGAAGA
131 CGTTTCTGTGATCGTTGCTTCGTGTTCTTCAAAACCCATGTCTGAATTTCTTTTTTTGTTGAAGA
74946862 TTATGAAATGTGCCATTTATGATTATATGAACTTTATGATGTTTTTATATGGAATATGAAAGATA
196 TTATGAAATGTGCCATTTATGATTATATGAACTTTATGATGTTTTTATATGGAATATGAAAGATA
74946927 TGAATGAGATTATTAAGCTTTGTCTTTGAATTTTGATGAAATAGAG
261 TGAATGAGATTATTAAGCTTTGTCTTTGAATTTTGATGAAATAGAG
74946973 CTTATTGAGC
Statistics
Matches: 304, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
312 304 1.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (312 bp):
AAAGATGACTTTATTTTCATGCATGTTAGCCGAAAATTAGCAAAAGAAGAAGGGTTTGAAGCTTT
TGTATATTCGGCACTTTGATAGCTAAATTGAGGTATGAAATTTGTTCGGTTTTTGATAATTTCTA
CGTTTCTGTGATCGTTGCTTCGTGTTCTTCAAAACCCATGTCTGAATTTCTTTTTTTGTTGAAGA
TTATGAAATGTGCCATTTATGATTATATGAACTTTATGATGTTTTTATATGGAATATGAAAGATA
TGAATGAGATTATTAAGCTTTGTCTTTGAATTTTGATGAAATAGAGAAAACA
Found at i:74950929 original size:22 final size:22
Alignment explanation
Indices: 74950904--74950946 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74950894 ACTATATGAC
74950904 CCAAAAATCCAA-CTTCCTAAAG
1 CCAAAAAT-CAATCTTCCTAAAG
*
74950926 CCAAAACTCAATCTTCCTAAA
1 CCAAAAATCAATCTTCCTAAA
74950947 CTTAGCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.44, C:0.33, G:0.02, T:0.21
Consensus pattern (22 bp):
CCAAAAATCAATCTTCCTAAAG
Found at i:74956065 original size:48 final size:48
Alignment explanation
Indices: 74955996--74956178 Score: 296
Period size: 48 Copynumber: 3.8 Consensus size: 48
74955986 TGAACATGCA
* * *
74955996 TATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
74956044 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
74956092 CATATGTGGTAAAGCCGAATGG-TCAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGAGATATG
*
74956140 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
74956179 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
47 1 0.01
48 125 0.98
49 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:74956433 original size:37 final size:37
Alignment explanation
Indices: 74956325--74956433 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
74956315 GGAAATATAT
*
74956325 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
74956362 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
74956399 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
74956434 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:74973401 original size:31 final size:31
Alignment explanation
Indices: 74973363--74973434 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
74973353 AAAGTGTCAC
74973363 ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
1 ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
* *
74973394 ACGCCCGTATAGATGGGTCGTGTGGATTCAC
1 ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
74973425 ACGCCCGTGT
1 ACGCCCGTGT
74973435 GGCTTGGGGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (31 bp):
ACGCCCGTGTAGATGGGTCGTGTGGATTCAA
Found at i:74977182 original size:43 final size:44
Alignment explanation
Indices: 74977118--74977204 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
74977108 ATTGATCTGT
* *
74977118 GATTTTGTGCAAGACCGTGTTTGGGACATAGGCCTCGAT-TTGA
1 GATTTTGTGCAAGACCGTGTTTGGAACAGAGGCCTCGATATTGA
** * *
74977161 GATTTTGTTTAAGACCTTGTTTGGAACAGAGGCTTCGATATTGA
1 GATTTTGTGCAAGACCGTGTTTGGAACAGAGGCCTCGATATTGA
74977205 ATTACATGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 33 0.89
44 4 0.11
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.36
Consensus pattern (44 bp):
GATTTTGTGCAAGACCGTGTTTGGAACAGAGGCCTCGATATTGA
Found at i:74980662 original size:79 final size:78
Alignment explanation
Indices: 74980560--74980783 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
74980550 GCTACTCATT
* *
74980560 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
74980625 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
74980640 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
74980704 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
74980718 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
74980782 GA
63 GA
74980784 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 56 0.44
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:74980677 original size:39 final size:40
Alignment explanation
Indices: 74980560--74980783 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
74980550 GCTACTCATT
* *
74980560 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
74980600 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
74980640 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
74980679 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
74980718 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
74980759 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74980784 CATCATTCAA
Statistics
Matches: 166, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 77 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:74988693 original size:39 final size:40
Alignment explanation
Indices: 74988576--74988746 Score: 231
Period size: 39 Copynumber: 4.3 Consensus size: 40
74988566 GCTACTCGTT
* * *
74988576 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
74988616 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
74988656 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
74988695 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
74988734 CAAATGCCTTCGG
1 CAAATGCCTTCGG
74988747 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 72 0.59
40 48 0.39
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:74988753 original size:79 final size:79
Alignment explanation
Indices: 74988576--74988799 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 79
74988566 GCTACTCGTT
* * * *
74988576 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
*
74988641 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
74988656 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCAG
1 CAAATGCCTTCGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
74988719 AATTAGTATCTCGCC
65 AATTAGTAACTCGCA
* * * * * * *
74988734 CAAATGCCTTCGGATCTTAGTCCAGATATGGTCACTTAGCACAAA-ACCTTCGGGACTTAGCCCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCA
74988798 GA
64 GA
74988800 CATCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 34 0.28
79 56 0.46
80 31 0.26
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
ATTAGTAACTCGCA
Done.