Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 228 of 310
Found at i:74991742 original size:20 final size:20
Alignment explanation
Indices: 74991717--74991755 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
74991707 ATAGAATGGG
74991717 TCTAATCGAGTTAAAGGAAC
1 TCTAATCGAGTTAAAGGAAC
74991737 TCTAATCGAGTTAAAGGAA
1 TCTAATCGAGTTAAAGGAA
74991756 TTAAAATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.26
Consensus pattern (20 bp):
TCTAATCGAGTTAAAGGAAC
Found at i:74991763 original size:20 final size:20
Alignment explanation
Indices: 74991720--74991763 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
74991710 GAATGGGTCT
**
74991720 AATCGAGTTAAAGGAACTCT
1 AATCGAGTTAAAGGAACTAA
*
74991740 AATCGAGTTAAAGGAATTAA
1 AATCGAGTTAAAGGAACTAA
74991760 AATC
1 AATC
74991764 TCAGTTGCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.25
Consensus pattern (20 bp):
AATCGAGTTAAAGGAACTAA
Found at i:74996375 original size:46 final size:46
Alignment explanation
Indices: 74996321--74996494 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
74996311 TTTGGGCATT
*
74996321 CGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAGCGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTC
* * * * * *
74996367 TGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCGTC
* * * *
74996414 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTC
*
74996460 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74996495 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.61
47 30 0.29
48 2 0.02
50 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTC
Found at i:74996474 original size:93 final size:93
Alignment explanation
Indices: 74996315--74996486 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
74996305 GGGATATTTG
* * * * *
74996315 GGCATTCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAGCGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
*
74996380 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
74996408 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
74996473 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74996487 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74997915 original size:20 final size:20
Alignment explanation
Indices: 74997890--74997936 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
74997880 ATTTTGATAT
*
74997890 ACATGAT-TGATATGATTTGC
1 ACATGATATG-TATGATATGC
74997910 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74997930 ACATGAT
1 ACATGAT
74997937 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74998057 original size:25 final size:26
Alignment explanation
Indices: 74997986--74998082 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
74997976 GAGGAAGTGC
* *
74997986 AAAAGGGCTTATTCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTG
74998012 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
74998038 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
74998063 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
74998083 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 32 0.48
26 34 0.52
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:74998067 original size:51 final size:51
Alignment explanation
Indices: 74997986--74998082 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
74997976 GAGGAAGTGC
* **
74997986 AAAAGGGCTTATTCCCCAGTTTATTAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTT-TGCCCCAGTTTATTG
* *
74998038 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTT
74998083 ATTAAAGAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 9 0.22
51 21 0.52
52 10 0.25
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:75001742 original size:28 final size:29
Alignment explanation
Indices: 75001702--75001772 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
75001692 ATAGTAAGTC
75001702 CGCACACTTAGTGCT-TA-ATAATCAAACT
1 CGCACACTTAGTGCTATACAT-ATCAAACT
* *
75001730 CGCACACTTAGTGCTATACATTTTAAACT
1 CGCACACTTAGTGCTATACATATCAAACT
*
75001759 CGTACACTTAGTGC
1 CGCACACTTAGTGC
75001773 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.39
29 21 0.55
30 2 0.05
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACATATCAAACT
Found at i:75008855 original size:28 final size:29
Alignment explanation
Indices: 75008815--75008885 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
75008805 ATAGTAAGTC
75008815 CGCACACTTAGTGCT-TA-ATAATCAAACT
1 CGCACACTTAGTGCTATACAT-ATCAAACT
* *
75008843 CGCACACTTAGTGCTATACATTTTAAACT
1 CGCACACTTAGTGCTATACATATCAAACT
75008872 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75008886 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
28 15 0.38
29 22 0.56
30 2 0.05
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACATATCAAACT
Found at i:75016230 original size:20 final size:20
Alignment explanation
Indices: 75016205--75016251 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
75016195 ATTTTGATAT
*
75016205 ACATGAT-TGATATGATTTGC
1 ACATGATATG-TATGATATGC
75016225 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75016245 ACATGAT
1 ACATGAT
75016252 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75016352 original size:27 final size:26
Alignment explanation
Indices: 75016301--75016450 Score: 225
Period size: 26 Copynumber: 5.8 Consensus size: 26
75016291 GAGGAAGTGC
75016301 AAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75016326 AAATAGGGCTTATGCCCCAGTTTATTG
1 AAA-AGGGCTTATGCCCCAGTTTATTG
75016353 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* *
75016380 AAAAAGACTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75016406 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75016431 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
75016451 ATTAAAGAGG
Statistics
Matches: 116, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
25 36 0.31
26 42 0.36
27 35 0.30
28 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75016391 original size:53 final size:52
Alignment explanation
Indices: 75016301--75016450 Score: 225
Period size: 53 Copynumber: 2.9 Consensus size: 52
75016291 GAGGAAGTGC
75016301 AAAAGGGCTTATG-CCCAGTTTATTGAAATAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAA-AGGGCTTATGCCCCAGTTTATTG
* *
75016353 AAAAAGGGCTTATGCCCCAGTTTATTGAAAAAGACTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
**
75016406 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTT
75016451 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
50 10 0.11
51 21 0.23
52 10 0.11
53 34 0.38
54 15 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75017622 original size:235 final size:235
Alignment explanation
Indices: 75017186--75017655 Score: 818
Period size: 235 Copynumber: 2.0 Consensus size: 235
75017176 GCATGTCTAA
75017186 GATTGGATCCATTCGAAGAGCTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTACGGA
1 GATTGGATCCATTCGAAGAGCTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTACGGA
*
75017251 TTCCTACCTGGTGCCCAGCTTCCATTCACTTTGTTAGCTTAACAAAAGTTAGTTTTTAACGCACT
66 TTCCTACCTGGTGCCCAGCTTCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTTTTAACGCACT
* * *
75017316 AAAACTAAACATGGGTTTTTATCTTCAATGTAGCACGTCGGATTCGACCATAACGTCTGGGTCGA
131 AAAACTAAACATGGGTTTTTAACTTCAATGTAGCACGTCAGATTCGACCATAACGTCTGGGCCGA
75017381 GTTTGGGGTGTTACATTTAGTGGTATCAGAGCCTAGGTTG
196 GTTTGGGGTGTTACATTTAGTGGTATCAGAGCCTAGGTTG
75017421 GATTGGATCCATTCGAAGAGCTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTACGGA
1 GATTGGATCCATTCGAAGAGCTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTACGGA
* *
75017486 TTCCTACCTGGTGCCCAGCTTCCATTCACTTTGTTAGCTTAACAAAAGTCGGTTTTTATCGCACT
66 TTCCTACCTGGTGCCCAGCTTCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTTTTAACGCACT
* * *
75017551 AAAA-TGAAACATGGGTTTTTAACTTCAATGTGGCACGTCAGATTC-AGCCATAAGGTGTGGGCC
131 AAAACT-AAACATGGGTTTTTAACTTCAATGTAGCACGTCAGATTCGA-CCATAACGTCTGGGCC
*
75017614 GGGTTTGGGGTGTTACATTTAGTGGTATCAGAGCCTAGGTTG
194 GAGTTTGGGGTGTTACATTTAGTGGTATCAGAGCCTAGGTTG
75017656 CAACAACTCG
Statistics
Matches: 223, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
234 2 0.01
235 221 0.99
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (235 bp):
GATTGGATCCATTCGAAGAGCTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTACGGA
TTCCTACCTGGTGCCCAGCTTCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTTTTAACGCACT
AAAACTAAACATGGGTTTTTAACTTCAATGTAGCACGTCAGATTCGACCATAACGTCTGGGCCGA
GTTTGGGGTGTTACATTTAGTGGTATCAGAGCCTAGGTTG
Found at i:75021424 original size:61 final size:61
Alignment explanation
Indices: 75021324--75021445 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
75021314 AAGAAGCAAC
*
75021324 AGTTGGAGGATGAGTCATTGGTTTCTCGGATTCAGCAAGTTGAGAACGGGGAGAATTCAGA
1 AGTTGGAGGATGAGTCATTGGTTTCTCGGATTCAACAAGTTGAGAACGGGGAGAATTCAGA
*
75021385 AGTTGGAGGATGAGTCATTGGTTTCTCGGATTCAACAAGTTGAGAAGGGGGAGAATTCAGA
1 AGTTGGAGGATGAGTCATTGGTTTCTCGGATTCAACAAGTTGAGAACGGGGAGAATTCAGA
75021446 CTTTGGGTTA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (61 bp):
AGTTGGAGGATGAGTCATTGGTTTCTCGGATTCAACAAGTTGAGAACGGGGAGAATTCAGA
Found at i:75024633 original size:25 final size:25
Alignment explanation
Indices: 75024605--75024652 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75024595 TTATATTATG
* * *
75024605 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
75024630 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
75024653 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:75024713 original size:20 final size:20
Alignment explanation
Indices: 75024688--75024734 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
75024678 ATTTTGATAT
*
75024688 ACATGAT-TGATATGATTTGC
1 ACATGATATG-TATGATATGC
75024708 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75024728 ACATGAT
1 ACATGAT
75024735 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75024839 original size:26 final size:26
Alignment explanation
Indices: 75024786--75024933 Score: 221
Period size: 26 Copynumber: 5.7 Consensus size: 26
75024776 GGAAGTGCAG
75024786 AAGGGCTTA-GCCCCAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTG-AA
*
75024812 AACGGCTTATGCCCCAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTG-AA
75024839 AAGGG-TTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
*
75024864 AAGGGCTTATGCCTCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
* *
75024890 AAGGGCTTATACCCCAGTTTATCGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
75024916 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
75024934 ATTAAAGAGG
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
25 16 0.14
26 76 0.67
27 21 0.19
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTATTGAA
Found at i:75030840 original size:46 final size:44
Alignment explanation
Indices: 75030782--75030947 Score: 131
Period size: 46 Copynumber: 3.6 Consensus size: 44
75030772 CCCATAAGCA
75030782 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAGCCATAGGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA-CCATA-GTG
* * ** *
75030828 AACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACA-TTTCA-CG
1 AACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACACCAT-AGTG
* * * * *
75030875 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA-CCAT-AGTG
75030921 AACTCGGACTCAACTCAACGAGCTCGG
1 AACTCGGACTCAACTCAACGAGCTCGG
75030948 ATGCTCAACC
Statistics
Matches: 94, Mismatches: 16, Indels: 20
0.72 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 1 0.01
45 2 0.02
46 51 0.54
47 26 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGCTCGGGCGTTCACACCATAGTG
Found at i:75030948 original size:93 final size:93
Alignment explanation
Indices: 75030782--75030951 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
75030772 CCCATAAGCA
* * * * *
75030782 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAGCCATAGGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCACAGCCATAAGTGAACTCGGACTCAACTCAAC
*
75030847 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGCTCGGATGCCTAGTTACATTTCACG
* * *
75030875 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCACAGCCATAAGTGAACTCGGACTCAACTCAAC
75030940 GAGCTCGGATGC
66 GAGCTCGGATGC
75030952 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCACAGCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATTTCACG
Found at i:75030967 original size:46 final size:44
Alignment explanation
Indices: 75030782--75030967 Score: 101
Period size: 46 Copynumber: 4.0 Consensus size: 44
75030772 CCCATAAGCA
** * *
75030782 AACTCGGACTCAACTCAACGAGCTCGGGCGTTC-ACAGCCATAGGTG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCTCAACA-TC-TA-GTG
* * * *
75030828 AACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTACATTTCA-CG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACATCT-AGTG
* * * * * *
75030875 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-AAGTG
1 AACTCGGACTCAACTCAACGAGCTC-G-GATGCTCA-ACATCTAGTG
75030921 AACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCTCAA-CAT-CTAGTG
75030967 A
1 A
75030968 CATCTCACTT
Statistics
Matches: 107, Mismatches: 20, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
44 8 0.07
45 3 0.03
46 56 0.52
47 29 0.27
48 2 0.02
49 5 0.05
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCTAGTG
Found at i:75032493 original size:27 final size:27
Alignment explanation
Indices: 75032454--75032645 Score: 180
Period size: 27 Copynumber: 7.1 Consensus size: 27
75032444 GGTTGTTAAG
* *
75032454 ACCCC-AGTTTGTAAAATTACCGAAAT
1 ACCCCTAGATTGTAAAATTATCGAAAT
75032480 ACCCCTAGATTGTAAAATTATCGAAAT
1 ACCCCTAGATTGTAAAATTATCGAAAT
* *
75032507 ACCCCCA-ATTTGTAAAATTATCAAAAT
1 ACCCCTAGA-TTGTAAAATTATCGAAAT
* *
75032534 ACCCCCAGATTGCAAAATTA-CTGAAAT
1 ACCCCTAGATTGTAAAATTATC-GAAAT
* * *
75032561 AACCCTAGTTTGTAAAATTA-CCAAAGT
1 ACCCCTAGATTGTAAAATTATCGAAA-T
*
75032588 A-CCCTTGTATTGTAAAATTATCGAAAT
1 ACCCCTAG-ATTGTAAAATTATCGAAAT
* * *
75032615 A-CCCTTGTAGTGTAAAATTATCAAAAT
1 ACCCCTAG-ATTGTAAAATTATCGAAAT
75032642 ACCC
1 ACCC
75032646 TATAGGATAA
Statistics
Matches: 142, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
26 15 0.11
27 120 0.85
28 7 0.05
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
ACCCCTAGATTGTAAAATTATCGAAAT
Found at i:75032535 original size:54 final size:53
Alignment explanation
Indices: 75032454--75032645 Score: 217
Period size: 54 Copynumber: 3.6 Consensus size: 53
75032444 GGTTGTTAAG
*
75032454 ACCCCAGTTTGTAAAATTACCGAAATACCCCTAGATTGTAAAATTATCGAAAT
1 ACCCCAGTTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCGAAAT
* * * *
75032507 ACCCCCAATTTGTAAAATTATCAAAATACCCCCAGATTGCAAAATTA-CTGAAAT
1 A-CCCCAGTTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATC-GAAAT
* * *
75032561 AACCCTAGTTTGTAAAATTACCAAAGTA-CCCTTGTATTGTAAAATTATCGAAAT
1 -ACCCCAGTTTGTAAAATTACCAAAATACCCCTAG-ATTGTAAAATTATCGAAAT
** * *
75032615 ACCCTTGTAGTGTAAAATTATCAAAATACCC
1 ACCCCAGT-TTGTAAAATTACCAAAATACCC
75032646 TATAGGATAA
Statistics
Matches: 116, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
53 13 0.11
54 99 0.85
55 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
ACCCCAGTTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCGAAAT
Found at i:75032591 original size:81 final size:81
Alignment explanation
Indices: 75032455--75032618 Score: 206
Period size: 81 Copynumber: 2.0 Consensus size: 81
75032445 GTTGTTAAGA
* * * *
75032455 CCCCAGTTTGTAAAATTACCGAAATACCCCTAGATTGTAAAATTATCGAAATACCCCCAAT-TTG
1 CCCCAGATTGCAAAATTACCGAAATAACCCTAGATTGTAAAATTATCCAAATA-CCCCAATATTG
75032519 TAAAATTATCAAAATAC
65 TAAAATTATCAAAATAC
* * ***
75032536 CCCCAGATTGCAAAATTACTGAAATAACCCTAGTTTGTAAAATTA-CCAAAGTACCCTTGTATTG
1 CCCCAGATTGCAAAATTACCGAAATAACCCTAGATTGTAAAATTATCCAAA-TACCCCAATATTG
*
75032600 TAAAATTATCGAAATAC
65 TAAAATTATCAAAATAC
75032617 CC
1 CC
75032619 TTGTAGTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
80 8 0.11
81 63 0.89
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (81 bp):
CCCCAGATTGCAAAATTACCGAAATAACCCTAGATTGTAAAATTATCCAAATACCCCAATATTGT
AAAATTATCAAAATAC
Found at i:75034253 original size:13 final size:13
Alignment explanation
Indices: 75034235--75034261 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75034225 TTGGTGGACT
75034235 TAAAATATTTTTC
1 TAAAATATTTTTC
75034248 TAAAATATTTTTC
1 TAAAATATTTTTC
75034261 T
1 T
75034262 GAATGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAAATATTTTTC
Found at i:75036848 original size:27 final size:27
Alignment explanation
Indices: 75036817--75036915 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
75036807 CCTAGTTTTT
*
75036817 AAATTACTAAAATACCCTCAGATTGTA
1 AAATTACCAAAATACCCTCAGATTGTA
75036844 AAATTACCAAAATACCCTC-GATTTGTA
1 AAATTACCAAAATACCCTCAGA-TTGTA
* * * *
75036871 ATATTACCAAAATACCCCCATATTATA
1 AAATTACCAAAATACCCTCAGATTGTA
75036898 AAATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
75036916 TGTAGTGTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
26 2 0.03
27 60 0.95
28 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAGATTGTA
Found at i:75036925 original size:54 final size:54
Alignment explanation
Indices: 75036817--75036930 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
75036807 CCTAGTTTTT
* * * *
75036817 AAATTACTAAAATACCCTCAGATTGTAAAATTACCAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCCCAGATTATAAAATTACCAAAATACCCTCGATGTGTA
* * *
75036871 ATATTACCAAAATACCCCCATATTATAAAATTACCAAAATACCCTTG-TAGTGTA
1 AAATTACCAAAATACCCCCAGATTATAAAATTACCAAAATACCCTCGAT-GTGTA
75036925 AAATTA
1 AAATTA
75036931 TTGAAGTATC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCCAGATTATAAAATTACCAAAATACCCTCGATGTGTA
Found at i:75036926 original size:27 final size:27
Alignment explanation
Indices: 75036817--75036930 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
75036807 CCTAGTTTTT
*
75036817 AAATTACTAAAATACCCTCAG-ATTGTA
1 AAATTACCAAAATACCCTC-GTATTGTA
75036844 AAATTACCAAAATACCCTCG-ATTTGTA
1 AAATTACCAAAATACCCTCGTA-TTGTA
* * * *
75036871 ATATTACCAAAATACCCCCATATTATA
1 AAATTACCAAAATACCCTCGTATTGTA
* *
75036898 AAATTACCAAAATACCCTTGTAGTGTA
1 AAATTACCAAAATACCCTCGTATTGTA
75036925 AAATTA
1 AAATTA
75036931 TTGAAGTATC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
26 2 0.03
27 71 0.96
28 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGTATTGTA
Found at i:75036982 original size:27 final size:27
Alignment explanation
Indices: 75036896--75036967 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
75036886 CCCCATATTA
** *
75036896 TAAAATTACCAAAATACCCTTGTAGTG
1 TAAAATTACTGAAATACCCTTGTAGCG
* * *
75036923 TAAAATTATTGAAGTATCCTTGTAGCG
1 TAAAATTACTGAAATACCCTTGTAGCG
75036950 TAAAATTACTGAAATACC
1 TAAAATTACTGAAATACC
75036968 TTAGTTGGGT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTTGTAGCG
Found at i:75042189 original size:42 final size:41
Alignment explanation
Indices: 75042039--75042190 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 41
75042029 TGAGTTTACC
* * * * *
75042039 TGTAAGACCATATCTGAGATATGACATCGTTGTGATATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCA
* * * * *
75042081 TGTAAGACCAT-GCTGGGACATGGAATCGATATGAGAATCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTCA
* *
75042121 TGTAAGACCATCA-CTGGGCTATTGGCATCAATATGAGATTCCA
1 TGTAAGACCAT-ATCTGGGATA-TGGCATCGATATGAGATT-CA
*
75042164 CGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
75042191 TGGTACAATT
Statistics
Matches: 87, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
40 13 0.15
41 23 0.26
42 33 0.38
43 18 0.21
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTCA
Found at i:75043792 original size:51 final size:52
Alignment explanation
Indices: 75043737--75043848 Score: 208
Period size: 51 Copynumber: 2.2 Consensus size: 52
75043727 CTTCTCATCA
75043737 AAACATTTACCAATTTGTTTGCCTTTGGTATATTACTTCAATTTAAACCGC-
1 AAACATTTACCAATTTGTTTGCCTTTGGTATATTACTTCAATTTAAACCGCG
75043788 AAACATTTACCAATTTGTTTGCCTTTGGTATATTACTTCAATTTAAACCGCGG
1 AAACATTTACCAATTTGTTTGCCTTTGGTATATTACTTCAATTTAAACCGC-G
75043841 AAACATTT
1 AAACATTT
75043849 TAAAAACTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
51 51 0.86
53 8 0.14
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (52 bp):
AAACATTTACCAATTTGTTTGCCTTTGGTATATTACTTCAATTTAAACCGCG
Found at i:75044215 original size:33 final size:33
Alignment explanation
Indices: 75044173--75044280 Score: 153
Period size: 33 Copynumber: 3.3 Consensus size: 33
75044163 TGAATAACAT
* *
75044173 AGTATCAGTACAGTCTGGGCCAAAGCCCTATTC
1 AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
*
75044206 AGTATCAGTACATTCTGGGCCTAAGCCCTATAC
1 AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
* * *
75044239 AGAATCAGTACAGTCTGGGCCTAAGCCTTATAT
1 AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
*
75044272 AGTAGCAGT
1 AGTATCAGT
75044281 GTGGGCCTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (33 bp):
AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
Found at i:75044303 original size:28 final size:27
Alignment explanation
Indices: 75044244--75044303 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
75044234 TATACAGAAT
**
75044244 CAGTACAGTCTGGGCCTAAGCCTTATA
1 CAGTACAGTCTGGGCCTAAGCCAAATA
* * *
75044271 TAGTAGCAGTGTGGGCCTAAGCCAAATG
1 CAGTA-CAGTCTGGGCCTAAGCCAAATA
75044299 CAGTA
1 CAGTA
75044304 ACAATATAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCTAAGCCAAATA
Found at i:75044728 original size:27 final size:27
Alignment explanation
Indices: 75044664--75044716 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
75044654 GGGCATAATC
*
75044664 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCATACAGGGGCATTACA
* *
75044691 GTCACTTTACCCTACAGGGGCATTAC
1 GTCATTTTACCATACAGGGGCATTAC
75044717 GCTCTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCATTACA
Found at i:75044801 original size:27 final size:27
Alignment explanation
Indices: 75044771--75044823 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
75044761 GGGTGTTTTG
75044771 GTAAATCT-ACAAACCAAAGGTATTTCA
1 GTAAATCTGA-AAACCAAAGGTATTTCA
* * *
75044798 GTAATTTTGAAAACCAATGGTATTTC
1 GTAAATCTGAAAACCAAAGGTATTTC
75044824 TATAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (27 bp):
GTAAATCTGAAAACCAAAGGTATTTCA
Found at i:75044829 original size:27 final size:28
Alignment explanation
Indices: 75044781--75044862 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 28
75044771 GTAAATCTAC
75044781 AAACCAAAGGTATTTC-AGTAATTTT-GA
1 AAACCAAAGGTATTTCTA-TAATTTTAGA
*
75044808 AAACCAATGGTATTTCTATAATTTTTAGA
1 AAACCAAAGGTATTTCTATAA-TTTTAGA
** * *
75044837 AAGTCAAGGGTATTTCTGTAATTTTA
1 AAACCAAAGGTATTTCTATAATTTTA
75044863 TAAATTAGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 18 0.38
28 10 0.21
29 19 0.40
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (28 bp):
AAACCAAAGGTATTTCTATAATTTTAGA
Found at i:75044849 original size:29 final size:28
Alignment explanation
Indices: 75044789--75044942 Score: 111
Period size: 27 Copynumber: 5.6 Consensus size: 28
75044779 ACAAACCAAA
* * * *
75044789 GGTATTTCAGTAATTTTGA-AAACCAAT
1 GGTATTTCTGTAATTTTTAGAAATCAAG
*
75044816 GGTATTTCTATAATTTTTAGAAAGTCAAG
1 GGTATTTCTGTAATTTTTAGAAA-TCAAG
* * *
75044845 GGTATTTCTGTAA-TTTTATAAATTAGG
1 GGTATTTCTGTAATTTTTAGAAATCAAG
** *
75044872 GGTATTTCTGTAA-TTTTCCAAATTAAG
1 GGTATTTCTGTAATTTTTAGAAATCAAG
* * ** *
75044899 GGTATTTCAGTAA-TATTCCAAATCAGG
1 GGTATTTCTGTAATTTTTAGAAATCAAG
75044926 GGTATTT-TGGTAATTTT
1 GGTATTTCT-GTAATTTT
75044943 AAAAATTAAG
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
27 77 0.73
28 13 0.12
29 15 0.14
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (28 bp):
GGTATTTCTGTAATTTTTAGAAATCAAG
Found at i:75044882 original size:27 final size:27
Alignment explanation
Indices: 75044816--75045077 Score: 158
Period size: 27 Copynumber: 9.6 Consensus size: 27
75044806 GAAAACCAAT
* * * *
75044816 GGTATTTCTATAATTTTTAGAAAGTCAAG
1 GGTATTTCTGTAA-TTTTACAAA-TTAGG
*
75044845 GGTATTTCTGTAATTTTATAAATTAGG
1 GGTATTTCTGTAATTTTACAAATTAGG
* *
75044872 GGTATTTCTGTAATTTTCCAAATTAAG
1 GGTATTTCTGTAATTTTACAAATTAGG
* * * *
75044899 GGTATTTCAGTAATATTCCAAATCAGG
1 GGTATTTCTGTAATTTTACAAATTAGG
* *
75044926 GGTATTT-TGGTAATTTTAAAAATTAAG
1 GGTATTTCT-GTAATTTTACAAATTAGG
* * * *
75044953 TGT-TTTTTAGTAATTTTAC-AAGTCGAG
1 GGTATTTCT-GTAATTTTACAAATTAG-G
** * **
75044980 GGTATTTCAATAATTTTATAGGTT-GAG
1 GGTATTTCTGTAATTTTACAAATTAG-G
* * **
75045007 GGTATTTCGGTAATTTCACAAACCAGG
1 GGTATTTCTGTAATTTTACAAATTAGG
**
75045034 GGTATTT-TGGTAATTTTACAAACCAGG
1 GGTATTTCT-GTAATTTTACAAATTAGG
75045061 GGTATTT-TGGTAATTTT
1 GGTATTTCT-GTAATTTT
75045078 GTAAACCAAA
Statistics
Matches: 185, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
26 6 0.03
27 154 0.83
28 13 0.07
29 12 0.06
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTACAAATTAGG
Found at i:75044927 original size:54 final size:54
Alignment explanation
Indices: 75044761--75045055 Score: 211
Period size: 54 Copynumber: 5.4 Consensus size: 54
75044751 TCGCCTACAA
* * * ** * * *
75044761 GGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTGA-AAACCAA
1 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTT-ACAAATCAG
* * * * * * *
75044815 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTATAAATTAG
1 GGGTATTT-TGGTAA-TTTTACAAA-TTAAGGGTATTTCAGTAATTTTACAAATCAG
* * *
75044871 GGGTATTTCT-GTAATTTTCCAAATTAAGGGTATTTCAGTAATATTCCAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAATCAG
* * * * *
75044925 GGGTATTTTGGTAATTTTAAAAATTAAGTGTTTTTTAGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAATCAG
*** * ** * * * *
75044978 AGGGTATTTCAATAATTTTATAGGTTGAGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAATCAG
75045033 GGGTATTTTGGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
75045056 CCAGGGGTAT
Statistics
Matches: 184, Mismatches: 50, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
53 2 0.01
54 131 0.71
55 16 0.09
56 35 0.19
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAATCAG
Found at i:75044966 original size:81 final size:81
Alignment explanation
Indices: 75044789--75044993 Score: 191
Period size: 81 Copynumber: 2.5 Consensus size: 81
75044779 ACAAACCAAA
* * * * * ** *
75044789 GGTATTTCAGTAATTTTGA-AAACCAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTC
1 GGTATTTCTGTAATTTT-ACAAATCAAGGGTATTTCAATAA-TATTCCAAA-TCAGGGGTATTTC
* *
75044853 TGTAATTTTATAAATTAGG
63 TGTAATTTTAAAAATTAAG
* * *
75044872 GGTATTTCTGTAATTTTCCAAATTAAGGGTATTTCAGTAATATTCCAAATCAGGGGTATTT-TGG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCAATAATATTCCAAATCAGGGGTATTTCT-G
75044936 TAATTTTAAAAATTAAG
65 TAATTTTAAAAATTAAG
* * * *
75044953 TGT-TTTTTAGTAATTTTACAAGTCGAGGGTATTTCAATAAT
1 GGTATTTCT-GTAATTTTACAAATCAAGGGTATTTCAATAAT
75044994 TTTATAGGTT
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
80 5 0.05
81 56 0.57
82 6 0.06
83 32 0.32
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCAATAATATTCCAAATCAGGGGTATTTCTGT
AATTTTAAAAATTAAG
Found at i:75045092 original size:27 final size:27
Alignment explanation
Indices: 75045008--75045093 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
75044998 TAGGTTGAGG
* * ***
75045008 GTATTTCGGTAATTTCACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAAAA
***
75045035 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAAAA
**
75045062 GTATTTTGGTAATTTTGTAAACCAAAA
1 GTATTTTGGTAATTTTACAAACCAAAA
75045089 GTATT
1 GTATT
75045094 CAGTAATTCT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAAAA
Found at i:75045124 original size:27 final size:27
Alignment explanation
Indices: 75045091--75045165 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
75045081 AACCAAAAGT
75045091 ATTCAGTAATTCTACCCTACAAGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* * *
75045118 TTTCAGTAATTCTACACTACAGGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* *
75045145 ATTCAGTAATACTAGCCTACA
1 ATTCAGTAATTCTACCCTACA
75045166 GATATGAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGGGCA
Found at i:75047230 original size:33 final size:33
Alignment explanation
Indices: 75047178--75047287 Score: 157
Period size: 33 Copynumber: 3.3 Consensus size: 33
75047168 AGTGAATAAC
* *
75047178 ACAGTATCAGTACAGTCTGGGCCAAAGGCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
* * *
75047211 TCAGTATCAGCACAATCTGGGCCTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
75047244 ACAGTATCAGTACAGTCTGGACCTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
75047277 ACAGTAGCAGT
1 ACAGTATCAGT
75047288 GTTGGCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (33 bp):
ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
Found at i:75047296 original size:28 final size:30
Alignment explanation
Indices: 75047230--75047300 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 30
75047220 GCACAATCTG
*
75047230 GGCCTAAGCCCTATACAGTATCAGTACAGTCT
1 GGCCTAAGCCCTATACAGTAGCAGT--AGTCT
75047262 GGACCTAAGCCCTATACAGTAGCAGT-GT-T
1 GG-CCTAAGCCCTATACAGTAGCAGTAGTCT
75047291 GGCCTAAGCC
1 GGCCTAAGCC
75047301 AAATGCAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
28 8 0.22
29 3 0.08
30 2 0.05
32 2 0.05
33 22 0.59
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (30 bp):
GGCCTAAGCCCTATACAGTAGCAGTAGTCT
Found at i:75047712 original size:27 final size:26
Alignment explanation
Indices: 75047671--75047770 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
75047661 GGCATAATCA
*
75047671 TCATTTTGCCATACAAGGGTATTACAG
1 TCATTTTACC-TACAAGGGTATTACAG
* * * *
75047698 TCACTTTACCCTACAGGGGCATTACGG
1 TCATTTTA-CCTACAAGGGTATTACAG
* * * **
75047725 TCTTTTTACCTATTAGGGGTATTTTAG
1 TCATTTTACCTA-CAAGGGTATTACAG
75047752 TCATTTTACCTACAAGGGT
1 TCATTTTACCTACAAGGGT
75047771 GTTTTGGTAA
Statistics
Matches: 56, Mismatches: 15, Indels: 5
0.74 0.20 0.07
Matches are distributed among these distances:
26 9 0.16
27 45 0.80
28 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (26 bp):
TCATTTTACCTACAAGGGTATTACAG
Found at i:75047807 original size:27 final size:27
Alignment explanation
Indices: 75047777--75047829 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
75047767 GGGTGTTTTG
75047777 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * * *
75047804 GTAATTTTGCAAACCAATGGTATTTC
1 GTAAATCTACAAACCAAGGGTATTTC
75047830 TCTAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:75047935 original size:54 final size:54
Alignment explanation
Indices: 75047792--75048002 Score: 210
Period size: 54 Copynumber: 3.9 Consensus size: 54
75047782 TCTACAAACC
* * * * *
75047792 AAGGGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTCTAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAATTTTGCAAATCAAGGGTATTTCTGTAA-TTTTA-AAAATT
* * * * * **
75047848 AAGGATATTTCTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAATT
1 AAGGGTATTTCAGTAATTTTGCAAATCAAGGGTATTTCTGTAATTTTAAAAATT
* *
75047902 AAGGGTATTTTAGTAATTTTCCAAATCAAGGGTATTT-TGGTAATTTTAAAAATT
1 AAGGGTATTTCAGTAATTTTGCAAATCAAGGGTATTTCT-GTAATTTTAAAAATT
* * ** *
75047956 AAGGGTATTTCAGTAATTTTACAAGT-GGGGGTATTTCGGTAATTTTA
1 AAGGGTATTTCAGTAATTTTGCAAATCAAGGGTATTTCTGTAATTTTA
75048003 TAGGTTGATG
Statistics
Matches: 126, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 18 0.14
54 69 0.55
55 4 0.03
56 35 0.28
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCAGTAATTTTGCAAATCAAGGGTATTTCTGTAATTTTAAAAATT
Found at i:75047976 original size:27 final size:27
Alignment explanation
Indices: 75047792--75048002 Score: 145
Period size: 27 Copynumber: 7.8 Consensus size: 27
75047782 TCTACAAACC
** **
75047792 AAGGGTATTTCAGTAATTTTGCAAACC
1 AAGGGTATTTCAGTAATTTTAAAAATT
* ** * *
75047819 AATGGTATTTCTCTAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAA-TTTTA-AAAATT
* * **
75047848 AAGGATATTTCTGTAATTTTGTAAATT
1 AAGGGTATTTCAGTAATTTTAAAAATT
* * **
75047875 AGGGGTATTTCTGTAATTTTCCAAATT
1 AAGGGTATTTCAGTAATTTTAAAAATT
* ** *
75047902 AAGGGTATTTTAGTAATTTTCCAAATC
1 AAGGGTATTTCAGTAATTTTAAAAATT
**
75047929 AAGGGTATTTTGGTAATTTTAAAAATT
1 AAGGGTATTTCAGTAATTTTAAAAATT
* *
75047956 AAGGGTATTTCAGTAATTTT-ACAAGT
1 AAGGGTATTTCAGTAATTTTAAAAATT
** *
75047982 GGGGGTATTTCGGTAATTTTA
1 AAGGGTATTTCAGTAATTTTA
75048003 TAGGTTGATG
Statistics
Matches: 148, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
26 21 0.14
27 103 0.70
28 8 0.05
29 16 0.11
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTTTAAAAATT
Found at i:75048016 original size:53 final size:53
Alignment explanation
Indices: 75047876--75048032 Score: 154
Period size: 53 Copynumber: 2.9 Consensus size: 53
75047866 TTGTAAATTA
* ** * * *
75047876 GGGGTATTTCTGTAATTTTCCAAATTAAGGGTATTTTAGTAATTTTC-CAAATCA
1 GGGGTATTTCGGTAATTTTAAAAATTAAGGGTATTTCAGTAA-TTTCACAAGT-G
* * *
75047930 AGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTTACAAGTG
1 GGGGTATTTCGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAGTG
* ** * * *
75047983 GGGGTATTTCGGTAATTTTATAGGTTGATGGTATTTCGGTAATTTCACAA
1 GGGGTATTTCGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAA
75048033 ACCAGGGGTA
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
53 44 0.52
54 40 0.48
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
GGGGTATTTCGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAGTG
Found at i:75048020 original size:27 final size:27
Alignment explanation
Indices: 75047877--75048027 Score: 110
Period size: 27 Copynumber: 5.6 Consensus size: 27
75047867 TGTAAATTAG
* * *
75047877 GGGTATTTCTGTAATTTTCCAAA-TTAA
1 GGGTATTTCGGTAATTTT-AAAAGTTGA
** * **
75047904 GGGTATTTTAGTAATTTTCCAAA-TCAA
1 GGGTATTTCGGTAATTTT-AAAAGTTGA
* * *
75047931 GGGTATTTTGGTAATTTTAAAAATTAA
1 GGGTATTTCGGTAATTTTAAAAGTTGA
* * *
75047958 GGGTATTTCAGTAATTTTACAAG-TGG
1 GGGTATTTCGGTAATTTTAAAAGTTGA
* *
75047984 GGGTATTTCGGTAATTTTATAGGTTGA
1 GGGTATTTCGGTAATTTTAAAAGTTGA
*
75048011 TGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
75048028 CACAAACCAG
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 24 0.23
27 81 0.77
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTAAAAGTTGA
Found at i:75048104 original size:27 final size:27
Alignment explanation
Indices: 75048069--75048144 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
75048059 AACCAAAGGT
*
75048069 ATTCAGTAATTTTACCCTACAAGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* * * *
75048096 TTTCAGTAATTCTATCCTATACGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* *
75048123 ATTCAGTAATACTAGCCTACAA
1 ATTCAGTAATTCTACCCTACAA
75048145 ATATGAGATT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGGGCA
Found at i:75050259 original size:33 final size:33
Alignment explanation
Indices: 75050159--75050266 Score: 144
Period size: 33 Copynumber: 3.3 Consensus size: 33
75050149 TGAATAACAT
** * *
75050159 AGTATCAGTACAGTCCAGGCCAAAGCCCTATTC
1 AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
* *
75050192 AATATCAGTACAGTTTGGGCCTAAGCCCTATAC
1 AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
*
75050225 AGTATCAGTACAGTCTGGGCCTAACCCCTATAC
1 AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
*
75050258 AGTAGCAGT
1 AGTATCAGT
75050267 GTGGGCCTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (33 bp):
AGTATCAGTACAGTCTGGGCCTAAGCCCTATAC
Found at i:75050271 original size:28 final size:28
Alignment explanation
Indices: 75050197--75050276 Score: 81
Period size: 33 Copynumber: 2.7 Consensus size: 28
75050187 TATTCAATAT
* *
75050197 CAGTA-CAGTTTGGGCCTAAGCCCTATA
1 CAGTAGCAGTCTGGGCCTAACCCCTATA
75050224 CAGTATCAGTACAGTCTGGGCCTAACCCCTATA
1 CAG--T-AG--CAGTCTGGGCCTAACCCCTATA
*
75050257 CAGTAGCAGTGTGGGCCTAA
1 CAGTAGCAGTCTGGGCCTAA
75050277 GCGAAATGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
27 3 0.07
28 13 0.30
29 1 0.02
30 3 0.07
31 1 0.02
33 23 0.52
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (28 bp):
CAGTAGCAGTCTGGGCCTAACCCCTATA
Found at i:75050680 original size:27 final size:26
Alignment explanation
Indices: 75050650--75050750 Score: 94
Period size: 27 Copynumber: 3.8 Consensus size: 26
75050640 GGGCATAATC
75050650 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACC-TACAGGGGTATTACA
* * *
75050677 GTCACTTTACCCTACAGGGGCATTACG
1 GTCATTTTA-CCTACAGGGGTATTACA
* * **
75050704 GTCTTTTTACCTATTAGGGGTATTTTA
1 GTCATTTTACCTA-CAGGGGTATTACA
* *
75050731 GTCATTTCACCTACAAGGGT
1 GTCATTTTACCTACAGGGGT
75050751 GTTTTGCTAA
Statistics
Matches: 58, Mismatches: 14, Indels: 5
0.75 0.18 0.06
Matches are distributed among these distances:
26 9 0.16
27 47 0.81
28 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACA
Found at i:75050796 original size:27 final size:27
Alignment explanation
Indices: 75050766--75051058 Score: 175
Period size: 27 Copynumber: 10.9 Consensus size: 27
75050756 GCTAAATCTA
* *
75050766 CAAACCAAGGGTATTTCAATAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* **
75050793 CAAACCAATAGTATTTCTA-TAATTTTTAG
1 CAAATCAAGGGTATTTC-AGTAA-TTTT-G
*
75050822 -AAAGTCAAGGGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTCAGTAATTTTG
* * * *
75050849 TAAATTAGGGGTATTTCTGTAATTTT-
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * * *
75050875 TAAATTAAGGGTATTTTAGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
** *
75050902 CAAATC-AGGGTATTTTGGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
*
75050928 CAAATCAAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *** * *
75050955 CAAGTGGGGGGTATTTCGGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** ** *
75050982 TAGGTTGAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * *
75051009 CAAACCAGGGGTACTTT-GGTAATTTTG
1 CAAATCAAGGGTA-TTTCAGTAATTTTG
* * *
75051036 TAAACCAAAGGTA-TTCAGTAATT
1 CAAATCAAGGGTATTTCAGTAATT
75051059 CTACCCTACA
Statistics
Matches: 216, Mismatches: 40, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.01
26 54 0.25
27 128 0.59
28 18 0.08
29 14 0.06
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCAGTAATTTTG
Found at i:75051020 original size:54 final size:53
Alignment explanation
Indices: 75050772--75051058 Score: 229
Period size: 54 Copynumber: 5.3 Consensus size: 53
75050762 TCTACAAACC
* * * *** ** *
75050772 AAGGGTATTTCAATAATTTTGCAAACCAATAGTATTTCTATAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTT--AAA-TT
* ** * *
75050828 AAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTTAAATT
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTTAAATT
* * * * *
75050881 AAGGGTATTTTAGTAATTTTCCAAATCA-GGGTATTTTGGTAATTTTCCAAATC
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTT-TAAATT
* ** **
75050934 AAGGGTATTTCAGTAATTTTACAAGTGGGGGGTATTTCGGTAATTTTATAGGTT
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTT-TAAATT
* * **
75050988 GAGGGTATTTCAGTAATTTTACAAACCAGGGGTACTTT-GGTAATTTTGTAAACC
1 AAGGGTATTTCAGTAATTTTACAAATCAGGGGTA-TTTCGGTAATTTT-TAAATT
*
75051042 AAAGGTA-TTCAGTAATT
1 AAGGGTATTTCAGTAATT
75051059 CTACCCTACA
Statistics
Matches: 186, Mismatches: 42, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
52 16 0.09
53 61 0.33
54 67 0.36
55 3 0.02
56 39 0.21
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
AAGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTTAAATT
Found at i:75051084 original size:27 final size:27
Alignment explanation
Indices: 75051048--75051120 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
75051038 AACCAAAGGT
75051048 ATTCAGTAATTCTACCCTACAAGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* * *
75051075 TTTTAGTAATTCTACCCTACAGGGGCA
1 ATTCAGTAATTCTACCCTACAAGGGCA
* *
75051102 ATTCAGTAATACTAGCCTA
1 ATTCAGTAATTCTACCCTA
75051121 GAGATTCACA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGGGCA
Found at i:75055588 original size:26 final size:26
Alignment explanation
Indices: 75055552--75055634 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
75055542 ATGAAATGCC
75055552 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAAACCAT
* *
75055578 TATCATGGAACATTTACGTAATCCAT
1 TATCATGGAACATTTACCTAAACCAT
*
75055604 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAAACCAT
75055630 TATCA
1 TATCA
75055635 ATTTTTACCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAAACCAT
Found at i:75062425 original size:12 final size:11
Alignment explanation
Indices: 75062396--75062444 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 11
75062386 TATAAACACC
75062396 TATTATTTATTGT
1 TATT-TTTATT-T
75062409 TATTTTCTATTT
1 TATTTT-TATTT
75062421 TATTTTTATCTT
1 TATTTTTAT-TT
*
75062433 TATTTATATTT
1 TATTTTTATTT
75062444 T
1 T
75062445 TCAATTACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.18
12 19 0.58
13 8 0.24
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:75066693 original size:113 final size:113
Alignment explanation
Indices: 75066495--75066716 Score: 444
Period size: 113 Copynumber: 2.0 Consensus size: 113
75066485 AGCCTTAGTA
75066495 ACGAAGAAATGATATGGATGTGTTATGATTATTGATATATGTGTGCTTATGCGAGTTGACATATC
1 ACGAAGAAATGATATGGATGTGTTATGATTATTGATATATGTGTGCTTATGCGAGTTGACATATC
75066560 CGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGTTAT
66 CGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGTTAT
75066608 ACGAAGAAATGATATGGATGTGTTATGATTATTGATATATGTGTGCTTATGCGAGTTGACATATC
1 ACGAAGAAATGATATGGATGTGTTATGATTATTGATATATGTGTGCTTATGCGAGTTGACATATC
75066673 CGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGG
66 CGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGG
75066717 CTATGACCCG
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 109 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (113 bp):
ACGAAGAAATGATATGGATGTGTTATGATTATTGATATATGTGTGCTTATGCGAGTTGACATATC
CGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGTTAT
Found at i:75066712 original size:40 final size:40
Alignment explanation
Indices: 75066654--75066818 Score: 258
Period size: 40 Copynumber: 4.1 Consensus size: 40
75066644 ATATGTGTGC
*
75066654 TTATGCGAGTTGACATATCCGGGCTAAGACCCGAAGGCAA
1 TTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
*
75066694 TTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAA
1 TTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
* *
75066734 TTATGCGGGATGATATATCCGGGCTAAGACCCGAAGGCAA
1 TTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
* * *
75066774 TTATGCGAGTTCATATGTCCGGGTTAAGACCCGAAGGCAA
1 TTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
*
75066814 ATATG
1 TTATG
75066819 TTTGCGGCTG
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
Found at i:75077061 original size:29 final size:28
Alignment explanation
Indices: 75077029--75077089 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
75077019 ATTTATATTC
75077029 ATATGACCCATTAGGCCCAAATCACCTTT
1 ATATGACCCATTAGGCCCAAATCACC-TT
* *
75077058 ATATGGCCCATTAGGCCCATATCACCTT
1 ATATGACCCATTAGGCCCAAATCACCTT
75077086 ATAT
1 ATAT
75077090 TCATGCTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 6 0.20
29 24 0.80
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (28 bp):
ATATGACCCATTAGGCCCAAATCACCTT
Found at i:75077367 original size:104 final size:104
Alignment explanation
Indices: 75077187--75077394 Score: 407
Period size: 104 Copynumber: 2.0 Consensus size: 104
75077177 GCCTATTCTG
75077187 CCCGGGTTGGCCAGATCACAGACTGTAACGCCCCAATTTTTGGGAATTCTGTAAAAGTTGTAAAA
1 CCCGGGTTGGCCAGATCACAGACTGTAACGCCCCAATTTTTGGGAATTCTGTAAAAGTTGTAAAA
75077252 TTTAAAATTCTGTGTTCTGTTTGGTATGTGTAGGATTAA
66 TTTAAAATTCTGTGTTCTGTTTGGTATGTGTAGGATTAA
75077291 CCCGGGTTGGCCAGATCACAGACTGTAACGCCCCAATTTTTGGGAATTCTGTAAAAGTTGTAAAA
1 CCCGGGTTGGCCAGATCACAGACTGTAACGCCCCAATTTTTGGGAATTCTGTAAAAGTTGTAAAA
*
75077356 TTTAAAATTCTGTGTTTTGTTTGGTATGTGTAGGATTAA
66 TTTAAAATTCTGTGTTCTGTTTGGTATGTGTAGGATTAA
75077395 TCATGTTGGT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (104 bp):
CCCGGGTTGGCCAGATCACAGACTGTAACGCCCCAATTTTTGGGAATTCTGTAAAAGTTGTAAAA
TTTAAAATTCTGTGTTCTGTTTGGTATGTGTAGGATTAA
Found at i:75079050 original size:28 final size:28
Alignment explanation
Indices: 75079018--75079082 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
75079008 ATTTACTAGA
* *
75079018 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATATATGCAAAATGACCATT
* *
75079046 ATACCCCTATATGTGCAAAATGACCTTT
1 ATACCCCTATATATGCAAAATGACCATT
75079074 ATACCCCTA
1 ATACCCCTA
75079083 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATATATGCAAAATGACCATT
Found at i:75079246 original size:27 final size:28
Alignment explanation
Indices: 75079188--75079277 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
75079178 AGGAAGCGTC
*
75079188 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
75079216 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
75079243 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
75079272 CTGGTG
1 CTGGTG
75079278 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:75079288 original size:29 final size:28
Alignment explanation
Indices: 75079198--75079288 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
75079188 CTGGTGGCTA
* * *
75079198 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
75079226 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
75079253 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
75079282 TGTCACA
1 TGCCACA
75079289 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:75079296 original size:55 final size:56
Alignment explanation
Indices: 75079188--75079302 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
75079178 AGGAAGCGTC
* * *
75079188 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
75079243 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
75079299 CTGG
1 CTGG
75079303 CAGCCACGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:75083682 original size:40 final size:40
Alignment explanation
Indices: 75083645--75083826 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
75083635 GCTACTCGTT
*
75083645 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
* * *
75083685 CAAATACCTTCAGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * *
75083725 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * * * *
75083764 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
75083805 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
75083827 GGACATCATT
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 71 0.61
41 13 0.11
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:75091055 original size:39 final size:40
Alignment explanation
Indices: 75090930--75091061 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
75090920 GCTACTCGTT
75090930 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCAGATT-TAGTAACTCGCA
* *
75090970 CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
* * * * *
75091010 CCAATGCCTTCAGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
75091049 CAAATGCCTTCGG
1 CAAATGCCTTCGG
75091062 ATCTAAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 31 0.39
40 47 0.59
41 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
Found at i:75096540 original size:16 final size:15
Alignment explanation
Indices: 75096515--75096544 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75096505 CTAGATCGGC
75096515 AAAAGCCGAAAAGCT
1 AAAAGCCGAAAAGCT
75096530 AAAATGCCGAAAAGC
1 AAAA-GCCGAAAAGC
75096545 CGGTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (15 bp):
AAAAGCCGAAAAGCT
Found at i:75097023 original size:27 final size:28
Alignment explanation
Indices: 75096962--75097051 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
75096952 AGGAAGCGTC
*
75096962 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* * **
75096990 CTTGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
75097017 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
75097046 CTGGTG
1 CTGGTG
75097052 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:75097062 original size:29 final size:28
Alignment explanation
Indices: 75096972--75097062 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
75096962 CTGGTGGCTA
* * * *
75096972 TGCCACAAATTATCTGTTCTTGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
75097000 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
75097027 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
75097056 TGTCACA
1 TGCCACA
75097063 TTTTCTATAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:75098122 original size:16 final size:16
Alignment explanation
Indices: 75098103--75098139 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
75098093 AAACTTTCCA
75098103 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCGG
* *
75098119 CTTTTTGGTATTTCGG
1 CTTTTCGGCATTTCGG
75098135 CTTTT
1 CTTTT
75098140 TCCGATCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.05, C:0.19, G:0.22, T:0.54
Consensus pattern (16 bp):
CTTTTCGGCATTTCGG
Found at i:75102321 original size:28 final size:29
Alignment explanation
Indices: 75102276--75102351 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
75102266 TATATACATG
* *
75102276 CATATGGCCCA-CTTGGCCCAA-TCTTATT
1 CATATGGCCCATC-AGGCCCAATTCATATT
*
75102304 TATATGGCCCATCAGGCCCAATTCATATT
1 CATATGGCCCATCAGGCCCAATTCATATT
* *
75102333 CATATGACCCATTAGGCCC
1 CATATGGCCCATCAGGCCC
75102352 CAAATCACCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 17 0.43
29 23 0.57
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAATTCATATT
Found at i:75102366 original size:29 final size:28
Alignment explanation
Indices: 75102303--75102366 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
75102293 CCAATCTTAT
* * *
75102303 TTATATGGCCCATCAGGCCCAATTCATA
1 TTATATGACCCATCAGGCCCAAATCACA
* *
75102331 TTCATATGACCCATTAGGCCCCAAATCACC
1 TT-ATATGACCCATCAGG-CCCAAATCACA
75102361 TTATAT
1 TTATAT
75102367 TCATGCTCAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 2 0.07
29 17 0.59
30 10 0.34
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (28 bp):
TTATATGACCCATCAGGCCCAAATCACA
Found at i:75114977 original size:24 final size:25
Alignment explanation
Indices: 75114950--75115001 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
75114940 GCCTAGCCTC
75114950 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
**
75114974 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
75114999 TTT
1 TTT
75115002 CACACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:75115073 original size:21 final size:21
Alignment explanation
Indices: 75115049--75115088 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
75115039 TATAATGAGT
75115049 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
* **
75115070 ATATTATGTCATATCATGT
1 ATATCATAACATATCATGT
75115089 ATAACAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:75119413 original size:30 final size:30
Alignment explanation
Indices: 75119379--75119439 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75119369 TCCTTAACTC
75119379 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75119409 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75119439 A
1 A
75119440 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75127380 original size:36 final size:36
Alignment explanation
Indices: 75127340--75127411 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
75127330 ATCAATCCTT
75127340 GATACTTGGTGGTTTCAACACATAGCTCCACCCATC
1 GATACTTGGTGGTTTCAACACATAGCTCCACCCATC
** *
75127376 GATACTTGGTGGTTTCGGCACATAGCTCCTCCCATC
1 GATACTTGGTGGTTTCAACACATAGCTCCACCCATC
75127412 ATAGAGTTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (36 bp):
GATACTTGGTGGTTTCAACACATAGCTCCACCCATC
Found at i:75134835 original size:40 final size:41
Alignment explanation
Indices: 75134739--75134843 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
75134729 CGAATGATGT
*
75134739 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
75134779 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
75134819 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75134844 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:75140537 original size:48 final size:46
Alignment explanation
Indices: 75140466--75140737 Score: 285
Period size: 48 Copynumber: 5.7 Consensus size: 46
75140456 GGGTAAATTA
* * * * * *
75140466 CCGATGCCATGTCCTAGGCATGGTCTTACAATGTCTCACATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTCATATC-ATG
*
75140514 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATC-ATG
*
75140562 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATCA-TG
* *
75140610 CCGATGCCATGCTCCCA-ACATGGTCTTACATTGGCTCTCATAACATTG
1 CCGATGCCATG-TCCCAGACATGGTCTTACACT-GCTCTCATATCA-TG
* * * * *
75140658 TCGATGCCATGTTCCAAACATGGTCTTACACCGGCTCTCATAACATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACA-CTGCTCTCATATCA-TG
* *
75140706 CCGATGCCATGTTCCAAACATGGTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
75140738 AGCACACATT
Statistics
Matches: 202, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
47 6 0.03
48 190 0.94
49 6 0.03
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (46 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATATCATG
Found at i:75140631 original size:96 final size:95
Alignment explanation
Indices: 75140466--75140740 Score: 345
Period size: 96 Copynumber: 2.9 Consensus size: 95
75140456 GGGTAAATTA
* * * * * ** *
75140466 CCGATGCCATGTCCTAGGCATGGTCTTACAATGTCTCACATGTCGA-GGCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAC-ATTGCCGATGCCATGTCCCA
**
75140530 GACATGGTCTTACACTAGCTCTCATCTCAATG
65 -ACATGGTCTTACACTAGCTCTCATAACAATG
75140562 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGCTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATG-TCCCA
* * *
75140627 ACATGGTCTTACATTGGCTCTCATAACATTG
65 ACATGGTCTTACACTAGCTCTCATAACAATG
* * * * *
75140658 TCGATGCCATGTTCCAAACATGGTCTTACACCGGCTCTCATAACATTGCCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATG-TCCCA
75140723 ACATGGTCTTACACTAGC
65 ACATGGTCTTACACTAGC
75140741 ACACATTTCA
Statistics
Matches: 156, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
95 1 0.01
96 150 0.96
97 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTCCCAA
CATGGTCTTACACTAGCTCTCATAACAATG
Found at i:75142164 original size:27 final size:27
Alignment explanation
Indices: 75142087--75142166 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
75142077 GTGCATACAT
* *
75142087 CACATAAGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
75142114 CATATAAGGGCAAAATAGTTATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
75142141 CACATAAGGGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
75142167 TCGATCTGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:75148138 original size:13 final size:13
Alignment explanation
Indices: 75148120--75148144 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75148110 CACAAACGAT
75148120 AAAATTTTCACAC
1 AAAATTTTCACAC
75148133 AAAATTTTCACA
1 AAAATTTTCACA
75148145 GATATCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:75157503 original size:46 final size:47
Alignment explanation
Indices: 75157359--75157564 Score: 194
Period size: 46 Copynumber: 4.4 Consensus size: 47
75157349 TTTGTGTGCT
* * * * *
75157359 AGTGTAAGACATGTTTGGGACATGCATCAGCCAC-A-TTCTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AGAGCC
* ** * *
75157405 AGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGATG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
* *
75157453 AGTGTAAGACATGTCTGGCACATGCATCGGCCTCGATATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
*
75157499 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
75157543 AGTGTAAGACCATGTCTGGGAC
1 AGTGTAAGA-CATGTCTGGGAC
75157565 CTGGCATCAG
Statistics
Matches: 133, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.11
46 61 0.46
47 25 0.19
48 20 0.15
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:75157572 original size:46 final size:45
Alignment explanation
Indices: 75157404--75157621 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 45
75157394 TTCTGAGAGC
* * * *
75157404 CAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGATGAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-CGAGATGTG-T
* * *
75157451 CTAGTGTAAGA-CATGTCTGGCACAT-GCATCGGCCT-CGATATGTAAGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGG--TACGAGATGT--GT
75157498 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-TACGAGATGTGT
* * * *
75157542 CAGTGTAAGACCATGTCTGGGACCTGGCATCAGTACGTATAGAGGTTT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACG---AGATGTGT
* * *
75157590 TAGTGTAAGACCATGTCTCGAACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
75157622 ACATGGATAT
Statistics
Matches: 142, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.08
45 19 0.13
46 54 0.38
47 14 0.10
48 44 0.31
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGAGATGTGT
Found at i:75157665 original size:50 final size:48
Alignment explanation
Indices: 75157405--75157665 Score: 147
Period size: 46 Copynumber: 5.5 Consensus size: 48
75157395 TCTGAGAGCC
* * * *
75157405 AGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGAT-GA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTA-CG-GATAGAGGAGTT
* * **
75157453 AGTGTAAGA-CATGTCTGGCACAT-GCATCGGCCT-C-GATATGTA--AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG--TACGGATA-G-AGGAGTT
* * * *
75157499 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-G--AGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-TACGGATAGAGGAGTT
* * **
75157543 AGTGTAAGACCATGTCTGGGACCTGGCATCAGTACGTATAGAGGTTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTACGGATAGAGGAGTT
* * *
75157591 AGTGTAAGACCATGTCTCGAACATGGCATC-G-ACATGGATATGTGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTAC--GGATA-GAG-GAGTT
75157641 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
75157666 ACGTCGGCCT
Statistics
Matches: 174, Mismatches: 22, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 15 0.09
45 18 0.10
46 50 0.29
47 14 0.08
48 47 0.27
49 2 0.01
50 26 0.15
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGTACGGATAGAGGAGTT
Found at i:75158958 original size:20 final size:21
Alignment explanation
Indices: 75158919--75158958 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75158909 GTTATAATGA
75158919 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
*
75158940 CCACACGGGCGTG-TGCCCT
1 CCACACGAGCGTGTTGCCCT
75158959 ATTTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:75165308 original size:32 final size:32
Alignment explanation
Indices: 75165270--75165333 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
75165260 GATACCTCAA
75165270 ATTTAATCCCTAATTGTTAAATTCATCAAATT
1 ATTTAATCCCTAATTGTTAAATTCATCAAATT
75165302 ATTTAATCCCTAATTGTTAAATTCATCAAATT
1 ATTTAATCCCTAATTGTTAAATTCATCAAATT
75165334 TACTTAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.44
Consensus pattern (32 bp):
ATTTAATCCCTAATTGTTAAATTCATCAAATT
Found at i:75167288 original size:7 final size:7
Alignment explanation
Indices: 75167271--75167302 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
75167261 GAAACATATC
75167271 TAAAA-A
1 TAAAAGA
75167277 TAAAAGA
1 TAAAAGA
75167284 TAAAAGA
1 TAAAAGA
75167291 TAAAAGA
1 TAAAAGA
75167298 TAAAA
1 TAAAA
75167303 AAATTCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (7 bp):
TAAAAGA
Found at i:75173626 original size:40 final size:40
Alignment explanation
Indices: 75173580--75173804 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
75173570 CTTGCGCAAG
* * *
75173580 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
75173620 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
75173660 GCCTTCGGGTTTTATCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
** *
75173700 GCCTTCGGGTCTTAGCCCGGATATAG-CAACCCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
75173740 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
75173781 GCCTTCGGGGCTTAGCCTGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
75173805 CATTCGAATA
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.82
41 27 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:75177154 original size:28 final size:28
Alignment explanation
Indices: 75177122--75177198 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 28
75177112 ACTATAAAAT
75177122 TGATTGGGCCTAGTGGGCCATAT-AGATG
1 TGATTGGGCCTAGTGGGCCATATGA-ATG
* *
75177150 TGATTTGGGCCTAATGGGTCATATGAATG
1 TGA-TTGGGCCTAGTGGGCCATATGAATG
*
75177179 AGATTGGGCCTAGTGGGCCA
1 TGATTGGGCCTAGTGGGCCA
75177199 AAAGTATGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 18 0.43
29 23 0.55
30 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.35, T:0.29
Consensus pattern (28 bp):
TGATTGGGCCTAGTGGGCCATATGAATG
Found at i:75187151 original size:27 final size:27
Alignment explanation
Indices: 75187113--75187198 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
75187103 GTACCTGGAC
75187113 CCCCTAGTTGATAAAATGACTATTATG
1 CCCCTAGTTGATAAAATGACTATTATG
*
75187140 CCCCTAGTTGATAAAATGGCTATTATG
1 CCCCTAGTTGATAAAATGACTATTATG
*
75187167 CCCCTAGTTGATAAAATGACTGTTAT-
1 CCCCTAGTTGATAAAATGACTATTATG
75187193 CCCCTA
1 CCCCTA
75187199 TGAGATGTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 6 0.11
27 50 0.89
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (27 bp):
CCCCTAGTTGATAAAATGACTATTATG
Found at i:75189509 original size:27 final size:27
Alignment explanation
Indices: 75189479--75189535 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
75189469 AAAATTGCCA
*
75189479 AATAACAAATAATGTGATAATATCACC
1 AATAACAAATAATGTGATAAAATCACC
* * *
75189506 AATAATATATAATGTGATAAAATCGCC
1 AATAACAAATAATGTGATAAAATCACC
75189533 AAT
1 AAT
75189536 CCCCTTAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (27 bp):
AATAACAAATAATGTGATAAAATCACC
Found at i:75191688 original size:52 final size:51
Alignment explanation
Indices: 75191571--75191748 Score: 236
Period size: 51 Copynumber: 3.5 Consensus size: 51
75191561 ACTAGTGACT
* * *
75191571 CAAGTGTGGTTCTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATCA
**
75191620 CAAGTGTGGTACTATGTGAATACCACTTTGTGAAGAAAGATAGCTTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGATCA
* *
75191672 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGGTTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATC-A
* *
75191723 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
75191749 CGGGTATCCG
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 31 0.27
50 1 0.01
51 43 0.38
52 39 0.34
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATCA
Found at i:75208840 original size:18 final size:18
Alignment explanation
Indices: 75208817--75208860 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
75208807 TTGTAAAGTG
75208817 AATTTTGGTAAAAATGTC
1 AATTTTGGTAAAAATGTC
*
75208835 AATTTTGGTAACAATGTC
1 AATTTTGGTAAAAATGTC
75208853 AATTTTGG
1 AATTTTGG
75208861 ATTGAATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (18 bp):
AATTTTGGTAAAAATGTC
Found at i:75209428 original size:7 final size:8
Alignment explanation
Indices: 75209412--75209437 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
75209402 GTGCTCCAAA
75209412 TTTTATTT
1 TTTTATTT
75209420 TTTTATTT
1 TTTTATTT
75209428 TTTTATTT
1 TTTTATTT
75209436 TT
1 TT
75209438 GTGTGTGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:75210673 original size:25 final size:25
Alignment explanation
Indices: 75210641--75210707 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
75210631 TTTTAATAAT
75210641 TGGGGCAAAGCCCTTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTTGATAAAC
*
75210666 TGGGGCAAAGCCCTTTTTGGTAAAC
1 TGGGGCAAAGCCCTTTTTGATAAAC
*
75210691 TGGGGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
75210708 AGCACCTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTTGATAAAC
Found at i:75210776 original size:11 final size:11
Alignment explanation
Indices: 75210752--75210802 Score: 88
Period size: 11 Copynumber: 4.8 Consensus size: 11
75210742 ATATGTGAAT
75210752 ATATCATG-GC
1 ATATCATGTGC
75210762 ATATCATGTGC
1 ATATCATGTGC
75210773 ATATCATG-GC
1 ATATCATGTGC
75210783 ATATCATGTGC
1 ATATCATGTGC
75210794 ATATCATGT
1 ATATCATGT
75210803 ACAAAAGCAG
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.46
11 21 0.54
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:75210778 original size:21 final size:21
Alignment explanation
Indices: 75210752--75210801 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
75210742 ATATGTGAAT
75210752 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
75210773 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
75210794 ATATCATG
1 ATATCATG
75210802 TACAAAAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:75213038 original size:49 final size:49
Alignment explanation
Indices: 75212966--75213158 Score: 215
Period size: 49 Copynumber: 3.9 Consensus size: 49
75212956 GTAGCCGAAG
*
75212966 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * *
75213015 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
** * * * * * *
75213065 CCATCTGATACACGTAGTAGCCTGCAATTAGTACTAAACATGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
** *
75213115 GTTATCAAGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
75213159 AACCTCACAA
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 42 0.36
50 42 0.36
51 34 0.29
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:75213098 original size:50 final size:49
Alignment explanation
Indices: 75212980--75213157 Score: 187
Period size: 50 Copynumber: 3.6 Consensus size: 49
75212970 CTGGTACGCA
* ** *
75212980 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACCATCCGATACACG
* *
75213029 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AACCATCCGATACACG
* * * ** * * *
75213079 TAGTAGCCTGCAATTAGTACTAAACATGTGATCGAAGTTAT-CAAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-CCATCCGA-TACACG
75213130 TAGTAGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
75213158 CAACCTCACA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
49 31 0.29
50 43 0.40
51 33 0.31
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACCATCCGATACACG
Found at i:75219055 original size:27 final size:27
Alignment explanation
Indices: 75219025--75219202 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
75219015 ATATTGAGCC
* *
75219025 CGCACACTCAGTGCTATATAATCAATT
1 CGCACACTTAGTGCTACATAATCAATT
** *
75219052 CGCACACTTAGTGCTATGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAATT
* *
75219079 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AATT
** *
75219107 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAATT
* * *
75219134 CGCACACTTGGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAATT
* * *
75219161 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAATT
75219188 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75219203 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAATT
Found at i:75219164 original size:82 final size:81
Alignment explanation
Indices: 75219045--75219201 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 81
75219035 GTGCTATATA
* *
75219045 ATCAATTCGCACACTTAGTGCTATGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ATCAATTCGCACACTTAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
75219110 ACACTTAGTGCCGCATG
65 ACACTTAGTGCCGCATG
* * **
75219127 ATCAATTCGCACACTTGGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 ATCAATTCGCACACTTAGTGCTAT-ATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGC
75219191 ACACTTAGTGC
65 ACACTTAGTGC
75219202 TGTACAATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 17 0.25
82 51 0.75
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
ATCAATTCGCACACTTAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATG
Found at i:75224374 original size:25 final size:25
Alignment explanation
Indices: 75224346--75224415 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
75224336 CTCTTTTAAT
* *
75224346 AACTGGAGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75224371 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75224396 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
75224416 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:75224473 original size:10 final size:10
Alignment explanation
Indices: 75224460--75224498 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
75224450 ATATGTGAAT
75224460 ATATCATGGC
1 ATATCATGGC
75224470 ATATCATGTGC
1 ATATCATG-GC
75224481 ATATCATGGC
1 ATATCATGGC
75224491 ATATCATG
1 ATATCATG
75224499 TACAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:75224486 original size:21 final size:21
Alignment explanation
Indices: 75224460--75224499 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
75224450 ATATGTGAAT
75224460 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
75224481 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
75224500 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:75227662 original size:22 final size:24
Alignment explanation
Indices: 75227620--75227663 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
75227610 TAACTAAGTT
75227620 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
75227644 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
75227664 TCTTGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:75229053 original size:40 final size:41
Alignment explanation
Indices: 75228999--75229076 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 41
75228989 TTTGGCTATA
*
75228999 TATATATGGCACTTAGTGTACGA-TTCGACATAGCTTCGGT
1 TATATATGGCACTTAGTGTACGAGATCGACATAGCTTCGGT
* *
75229039 TATATGTGGCACTTAGTGTACGAGATCGAGATAGCTTC
1 TATATATGGCACTTAGTGTACGAGATCGACATAGCTTC
75229077 AGCTATGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 22 0.65
41 12 0.35
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTACGAGATCGACATAGCTTCGGT
Found at i:75230203 original size:20 final size:20
Alignment explanation
Indices: 75230178--75230216 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
75230168 TCAGTGAAAA
75230178 TGGGCC-CACGGCCCATATTG
1 TGGGCCACAC-GCCCATATTG
75230198 TGGGCCTACACGCCCATAT
1 TGGGCC-ACACGCCCATAT
75230217 GGCCCACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 8 0.47
22 3 0.18
ACGTcount: A:0.18, C:0.36, G:0.26, T:0.21
Consensus pattern (20 bp):
TGGGCCACACGCCCATATTG
Found at i:75235574 original size:79 final size:78
Alignment explanation
Indices: 75235472--75235694 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
75235462 GCTCCTCGTT
* *
75235472 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
75235537 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
75235552 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
75235616 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
75235630 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
75235693 GA
63 GA
75235695 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:75235589 original size:39 final size:40
Alignment explanation
Indices: 75235472--75235694 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
75235462 GCTCCTCGTT
* *
75235472 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
75235512 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
75235552 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
75235591 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
75235630 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
75235671 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75235695 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:75242737 original size:29 final size:29
Alignment explanation
Indices: 75242696--75242878 Score: 149
Period size: 28 Copynumber: 6.3 Consensus size: 29
75242686 GATCTCATTT
* *
75242696 CACACACTTAGTGCCCCAACAACCGATCTCA
1 CACACAC--AGTGCCTCAACAACCGATCTCG
**** ** *
75242727 CACACACAGTG-CTCGGTTACAAAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
75242755 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*** * *
75242784 CACACACAGTG-CTCAGTTA-CGAAACTTG
1 CACACACAGTGCCTCAACAACCG-ATCTCG
75242812 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
** * *
75242841 CACACACAGTG-CTCAATTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
75242869 CACACACAGT
1 CACACACAGT
75242879 ACCTATGTTC
Statistics
Matches: 118, Mismatches: 30, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
27 2 0.02
28 62 0.53
29 45 0.38
30 2 0.02
31 7 0.06
ACGTcount: A:0.32, C:0.37, G:0.15, T:0.16
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:75242761 original size:28 final size:28
Alignment explanation
Indices: 75242717--75242878 Score: 155
Period size: 28 Copynumber: 5.7 Consensus size: 28
75242707 TGCCCCAACA
* * **
75242717 ACCGATCTCACACACACAGTGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCAATT
** **
75242745 ACAAAACTCGCACACACAGTGCCTCAACA
1 ACCGAACTCGCACACACAGTG-CTCAATT
* *
75242774 ACCGATCTCGCACACACAGTGCTCAGTT
1 ACCGAACTCGCACACACAGTGCTCAATT
* **
75242802 A-CGAAACTTGCACACACAGTGCCTCAACA
1 ACCG-AACTCGCACACACAGTG-CTCAATT
*
75242831 ACCGATCTCGCACACACAGTGCTCAATT
1 ACCGAACTCGCACACACAGTGCTCAATT
*
75242859 ACGGAACTCGCACACACAGT
1 ACCGAACTCGCACACACAGT
75242879 ACCTATGTTC
Statistics
Matches: 105, Mismatches: 25, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
27 2 0.02
28 60 0.57
29 41 0.39
30 2 0.02
ACGTcount: A:0.32, C:0.36, G:0.15, T:0.17
Consensus pattern (28 bp):
ACCGAACTCGCACACACAGTGCTCAATT
Found at i:75242788 original size:57 final size:57
Alignment explanation
Indices: 75242696--75242878 Score: 285
Period size: 57 Copynumber: 3.2 Consensus size: 57
75242686 GATCTCATTT
* * * *
75242696 CACACACTTAGTGCCCCAACAACCGATCTCACACACACAGTGCTCGGTTACAAAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
*
75242755 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTTG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
* *
75242812 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAATTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
75242869 CACACACAGT
1 CACACACAGT
75242879 ACCTATGTTC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.32, C:0.37, G:0.15, T:0.16
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
Found at i:75243603 original size:22 final size:22
Alignment explanation
Indices: 75243575--75243620 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
75243565 CGACTTCCAA
75243575 CTCAAGCAATTTCTCTGAAGCC
1 CTCAAGCAATTTCTCTGAAGCC
75243597 CTCAAGCAATTTCTCTGAAGCC
1 CTCAAGCAATTTCTCTGAAGCC
75243619 CT
1 CT
75243621 ATAGACATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.28
Consensus pattern (22 bp):
CTCAAGCAATTTCTCTGAAGCC
Found at i:75245196 original size:39 final size:39
Alignment explanation
Indices: 75245146--75245303 Score: 228
Period size: 39 Copynumber: 4.1 Consensus size: 39
75245136 TTATATTACT
*
75245146 AGCACAAAGCCTGCGGAACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTTCC
* * *
75245185 AACACGAAGCCTGCGGGACTTTAGCTCGGATACATTTCC
1 AGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTTCC
*
75245224 AGCACGAAGCCTGC-GAGACTTTAGCCCGGATACATTTCT
1 AGCACGAAGCCTGCGGA-ACTTTAGCCCGGATACATTTCC
* * *
75245263 AGCACAAAGCCTGCGGGACCTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTTCC
75245302 AG
1 AG
75245304 TGTCTTGAAT
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 1 0.01
39 103 0.98
40 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTTCC
Found at i:75260125 original size:28 final size:28
Alignment explanation
Indices: 75260094--75260189 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
75260084 TTTGGGCTGG
*
75260094 ATGGTCCATATAAATGAGATTGGGCCTA
1 ATGGGCCATATAAATGAGATTGGGCCTA
* *
75260122 ATGGGCCATATGAATTTGA-ATTGGGCCTG
1 ATGGGCCATAT-AA-ATGAGATTGGGCCTA
* *
75260151 ATGTGCCATATATATGAGATTGGGCCTA
1 ATGGGCCATATAAATGAGATTGGGCCTA
*
75260179 GTGGGCCATAT
1 ATGGGCCATAT
75260190 GTATGTATGT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 3 0.05
28 29 0.52
29 21 0.38
30 3 0.05
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
ATGGGCCATATAAATGAGATTGGGCCTA
Found at i:75263381 original size:118 final size:118
Alignment explanation
Indices: 75263171--75263406 Score: 427
Period size: 118 Copynumber: 2.0 Consensus size: 118
75263161 AACAAGTGAT
75263171 GCAATTGGCGTTTGGGCTTTTAAGAATAAAGGGCTAAAAGATGACACAAAAAGGAGTGTGGTGTA
1 GCAATTGGCGTTTGGGCTTTTAAGAATAAAGGGCTAAAAGATGACACAAAAAGGAGTGTGGTGTA
* * *
75263236 GTGGCAAGGTGGCGCGACTTAGGGGACAAGGAAGTGACGCCATAGAGGAAGCA
66 GTGGCAAGGTGGCGCCACTTAGAGGACAAGGAACTGACGCCATAGAGGAAGCA
*
75263289 GCAATTGGCGTTTGGGCTTTTAAGAATAAAGGGGTAAAAGATGACACAAAAAGGAGTGTGGTGTA
1 GCAATTGGCGTTTGGGCTTTTAAGAATAAAGGGCTAAAAGATGACACAAAAAGGAGTGTGGTGTA
*
75263354 GTGGCAAGGTGGTGCCACTTAGAGGACAAGGAACTGACGCCATAGAGGAAGCA
66 GTGGCAAGGTGGCGCCACTTAGAGGACAAGGAACTGACGCCATAGAGGAAGCA
75263407 AGGGGTCCAA
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 113 1.00
ACGTcount: A:0.33, C:0.13, G:0.35, T:0.19
Consensus pattern (118 bp):
GCAATTGGCGTTTGGGCTTTTAAGAATAAAGGGCTAAAAGATGACACAAAAAGGAGTGTGGTGTA
GTGGCAAGGTGGCGCCACTTAGAGGACAAGGAACTGACGCCATAGAGGAAGCA
Found at i:75264758 original size:27 final size:27
Alignment explanation
Indices: 75264728--75264779 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
75264718 ATATATCTGT
*
75264728 TCTGGTGGCTTAGCCACAATATTTGCA
1 TCTGGTGACTTAGCCACAATATTTGCA
* * *
75264755 TCTGGTTACTTTGTCACAATATTTG
1 TCTGGTGACTTAGCCACAATATTTG
75264780 GCAGCCTCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (27 bp):
TCTGGTGACTTAGCCACAATATTTGCA
Found at i:75277220 original size:40 final size:40
Alignment explanation
Indices: 75277182--75277543 Score: 625
Period size: 40 Copynumber: 9.1 Consensus size: 40
75277172 AGGTTTAGCA
* * *
75277182 CGGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277222 CGGATACATCACTAGCACGAATGCTCTTTGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277262 CGGACACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277302 CGGATACATCACTAGCACGAATGCTCTTTGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277342 CGGACACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277382 CGGATACATCACTAGCACGAATGCTCTTTGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277422 CGGACACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277462 CGGATACATCACTAGCACGAATGCTCTTTGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
*
75277502 CGGACACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
75277542 CG
1 CG
75277544 TTCAAAATTG
Statistics
Matches: 304, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 304 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
Done.