Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 229 of 310
Found at i:75277277 original size:80 final size:80
Alignment explanation
Indices: 75277192--75277543 Score: 695
Period size: 80 Copynumber: 4.4 Consensus size: 80
75277182 CGGATATATT
*
75277192 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
1 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
75277257 TAGTCCGGACACATC
66 TAGTCCGGACACATC
75277272 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
1 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
75277337 TAGTCCGGACACATC
66 TAGTCCGGACACATC
75277352 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
1 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
75277417 TAGTCCGGACACATC
66 TAGTCCGGACACATC
75277432 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
1 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
75277497 TAGTCCGGACACATC
66 TAGTCCGGACACATC
75277512 ACTAGCACGAATGCTCTTCGGAACTTAGTCCG
1 ACTAGCACGAATGCTCTTCGGAACTTAGTCCG
75277544 TTCAAAATTG
Statistics
Matches: 271, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 271 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGAACT
TAGTCCGGACACATC
Found at i:75280706 original size:107 final size:106
Alignment explanation
Indices: 75280493--75280706 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 106
75280483 TCTTCTTCCT
75280493 TCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAACACTTTTTTTTTGTTTTTCTTTC
1 TCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAACACTTTTTTTTTGTTTTTCTTTC
75280558 CTTCAACTCACGGCAAGGGGGGGGGACAATCACACATATCC
66 CTTCAACTCACGGCAAGGGGGGGGGACAATCACACATATCC
75280599 TCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAACACTTTTTTTTTTGTTTTTCTTT
1 TCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAACAC-TTTTTTTTTGTTTTTCTTT
75280664 CCTTCAACTCACGGCAAGGGGGGGGGACAATCACACATATCC
65 CCTTCAACTCACGGCAAGGGGGGGGGACAATCACACATATCC
75280706 T
1 T
75280707 TTCTTTTTTT
Statistics
Matches: 107, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
106 45 0.42
107 62 0.58
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (106 bp):
TCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATGAACACTTTTTTTTTGTTTTTCTTTC
CTTCAACTCACGGCAAGGGGGGGGGACAATCACACATATCC
Found at i:75288412 original size:26 final size:25
Alignment explanation
Indices: 75288361--75288418 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
75288351 CACTTTTATG
75288361 TTTA-TTTATCTTCTTTAAGTACTT
1 TTTATTTTATCTTCTTTAAGTACTT
*
75288385 TTTATTTTATTTTCATTTAA-TACTT
1 TTTATTTTATCTTC-TTTAAGTACTT
75288410 TTTCATTTT
1 TTT-ATTTT
75288419 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 16 0.53
26 10 0.33
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTATTTTATCTTCTTTAAGTACTT
Found at i:75291419 original size:42 final size:41
Alignment explanation
Indices: 75291339--75291487 Score: 151
Period size: 41 Copynumber: 3.6 Consensus size: 41
75291329 GAGCTTGGTC
75291339 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
75291380 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
75291422 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
* *
75291463 TCGAAGGGCTTTTAAGCCGGTGCTA
1 TCGAAGGGCTTTTGAGCCAGTGCTA
75291488 GGAGTCAGAC
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
39 3 0.03
40 9 0.10
41 36 0.41
42 28 0.32
43 12 0.14
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:75291471 original size:41 final size:40
Alignment explanation
Indices: 75291319--75291474 Score: 140
Period size: 41 Copynumber: 3.8 Consensus size: 40
75291309 GCTAATCGGG
* *
75291319 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTAGAGCCAGT
* *
75291360 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC--TTTAGAGCCAGT
* *
75291403 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTAGAGCCAGT
*
75291443 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTT
75291475 TAAGCCGGTG
Statistics
Matches: 94, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
39 3 0.03
40 15 0.16
41 41 0.44
42 19 0.20
43 12 0.13
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTAGAGCCAGT
Found at i:75302561 original size:44 final size:44
Alignment explanation
Indices: 75302512--75302607 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
75302502 CCAAAACATG
* *
75302512 TGTCACATATATCATGAACTTAGACCACAACTTATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
75302556 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
75302600 --TCACATAT
1 TGTCACATAT
75302608 TTTTAAGTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 8 0.16
44 42 0.84
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.28
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:75302598 original size:20 final size:20
Alignment explanation
Indices: 75302533--75302604 Score: 54
Period size: 20 Copynumber: 3.4 Consensus size: 20
75302523 TCATGAACTT
*
75302533 AGACCACAACTTATGAGTTC
1 AGACCACAACTCATGAGTTC
* * **
75302553 AGATGTCACATATATCATGAACTC
1 AGA--CCACA-A-CTCATGAGTTC
75302577 AGACCACAACTCATGAGTTC
1 AGACCACAACTCATGAGTTC
*
75302597 AGATCACA
1 AGACCACA
75302605 TATTTTTAAG
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
20 18 0.47
21 1 0.03
22 8 0.21
23 1 0.03
24 10 0.26
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.24
Consensus pattern (20 bp):
AGACCACAACTCATGAGTTC
Found at i:75310714 original size:28 final size:28
Alignment explanation
Indices: 75310674--75310827 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
75310664 TAAATTGTAC
*
75310674 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
75310702 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
75310730 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
75310758 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
75310786 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
75310813 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75310828 GACTTAATAT
Statistics
Matches: 123, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 24 0.20
28 99 0.80
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:75310842 original size:56 final size:56
Alignment explanation
Indices: 75310649--75310827 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
75310639 GAGATTGGCG
* * * * *
75310649 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
75310706 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
75310762 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
75310817 CTGAGTGTGCG
1 CTAAGTGTGCG
75310828 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 23 0.20
56 75 0.66
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:75313436 original size:40 final size:40
Alignment explanation
Indices: 75313346--75313570 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
75313336 TTGAATGATG
* * * *
75313346 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
75313386 TCCAGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75313426 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75313465 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75313505 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAGTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
75313546 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75313571 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.21
40 116 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75313588 original size:80 final size:80
Alignment explanation
Indices: 75313420--75313603 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
75313410 TGTGCGAGAT
* * * *
75313420 ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAG
** *
75313484 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTG
* * *
75313499 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAGTATAA-CCGGGCTATGTCCCAAA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCAAA
75313563 GGCATTTGAACGAG-G
65 GGCATTTGAACGAGTG
* * *
75313578 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
75313604 TACGTGATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 30 0.34
80 57 0.64
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAG
GCATTTGAACGAGTG
Found at i:75317149 original size:23 final size:23
Alignment explanation
Indices: 75317123--75317193 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
75317113 ACATTGGAGT
75317123 TTATCGTTTCATCTCATATGAGC
1 TTATCGTTTCATCTCATATGAGC
*
75317146 TTATTG-TTCAGT-TCGATA-GAGC
1 TTATCGTTTCA-TCTC-ATATGAGC
* *
75317168 TTACCGTTTCAGCTCAT-TAGAGC
1 TTATCGTTTCATCTCATAT-GAGC
75317191 TTA
1 TTA
75317194 CTGTTCATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
22 16 0.42
23 22 0.58
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (23 bp):
TTATCGTTTCATCTCATATGAGC
Found at i:75317194 original size:23 final size:24
Alignment explanation
Indices: 75317162--75317222 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
75317152 TTCAGTTCGA
*
75317162 TAGAGCTTACCGTT-TCAGCTCAT
1 TAGAGCTTACCGTTATCAGCTCAG
*
75317185 TAGAGCTTACTGTTCATCAGCTCAG
1 TAGAGCTTACCGTT-ATCAGCTCAG
*
75317210 GAGAAGCTTACCG
1 TAG-AGCTTACCG
75317223 ATCATGGCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 13 0.42
25 10 0.32
26 8 0.26
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (24 bp):
TAGAGCTTACCGTTATCAGCTCAG
Found at i:75319540 original size:45 final size:45
Alignment explanation
Indices: 75319476--75319644 Score: 162
Period size: 45 Copynumber: 3.8 Consensus size: 45
75319466 CTAGTAATTT
75319476 AGAAATCTGAGCTTGTTGAGTTGGTCTGAGTTCATGATATATGTG
1 AGAAATCTGAGCTTGTTGAGTTGGTCTGAGTTCATGATATATGTG
* * * ** ** *
75319521 AGAAATATGAACTTGTTGAGTTAGTCCAAGTTTGTGTTATATGTG
1 AGAAATCTGAGCTTGTTGAGTTGGTCTGAGTTCATGATATATGTG
* * ** *
75319566 A-AGCATCTGAGCTTGTTGAGTTGGTCTGAGTTCATTATGGATGCG
1 AGA-AATCTGAGCTTGTTGAGTTGGTCTGAGTTCATGATATATGTG
* * * *
75319611 AGCATTC-GAGCTCGTTGAGTTGGTCCGAGTTCAT
1 AGAAATCTGAGCTTGTTGAGTTGGTCTGAGTTCAT
75319645 TATGGATGCG
Statistics
Matches: 96, Mismatches: 26, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
44 26 0.27
45 70 0.73
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (45 bp):
AGAAATCTGAGCTTGTTGAGTTGGTCTGAGTTCATGATATATGTG
Found at i:75319628 original size:44 final size:45
Alignment explanation
Indices: 75319574--75319660 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 45
75319564 TGAAGCATCT
* *
75319574 GAGCTTGTTGAGTTGGTCTGAGTTCATTATGGATGCGA-GCATTC
1 GAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGATGCATTC
75319618 GAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGATGCAT
1 GAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGATGCAT
75319661 GTGACATCCG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 36 0.90
45 4 0.10
ACGTcount: A:0.18, C:0.15, G:0.32, T:0.34
Consensus pattern (45 bp):
GAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGATGCATTC
Found at i:75323698 original size:44 final size:44
Alignment explanation
Indices: 75323649--75323744 Score: 151
Period size: 44 Copynumber: 2.2 Consensus size: 44
75323639 CCAAAACATG
* *
75323649 TGTCACATATATCATGAAGTTAGACCACAACTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
*
75323693 TGTCACATATATCATGAACTCAGACCACAATTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
75323737 --TCACATAT
1 TGTCACATAT
75323745 TTCCTAGTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 8 0.16
44 41 0.84
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:75323735 original size:20 final size:20
Alignment explanation
Indices: 75323660--75323741 Score: 67
Period size: 20 Copynumber: 3.9 Consensus size: 20
75323650 GTCACATATA
*
75323660 TCATGAAGTT-AGACCACAAC
1 TCATG-AGTTCAGACCACAAT
*
75323680 TCATGAGTTCAGATGTCACATAT
1 TCATGAGTTCAGA--CCACA-AT
**
75323703 ATCATGAACTCAGACCACAAT
1 -TCATGAGTTCAGACCACAAT
*
75323724 TCATGAGTTCAGATCACA
1 TCATGAGTTCAGACCACA
75323742 TATTTCCTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
19 4 0.08
20 23 0.47
21 2 0.04
22 8 0.16
23 1 0.02
24 11 0.22
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (20 bp):
TCATGAGTTCAGACCACAAT
Found at i:75325461 original size:46 final size:46
Alignment explanation
Indices: 75325289--75325457 Score: 250
Period size: 46 Copynumber: 3.7 Consensus size: 46
75325279 TGTAACCCGC
**
75325289 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCAGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCACAT
* *
75325335 CCATAAGTTAACTCGAACTCAACTCAACGAGCTCAGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCACAT
* ** *
75325381 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GAAAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCA-TTCACAT
75325427 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
75325458 TTCGGATGCC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 2 0.02
46 111 0.98
ACGTcount: A:0.34, C:0.30, G:0.17, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCACAT
Found at i:75329470 original size:43 final size:43
Alignment explanation
Indices: 75329422--75329584 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
75329412 ATCGAGATGT
* *
75329422 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTGA
* * * *
75329465 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATATCTGGGACATTGGCATCG-TATTGA
* * * * *
75329508 GATTTCGTGTAAGACCTTATCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT-TGA
* *
75329551 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATATCTGGGACATTGGCAT
75329585 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 91 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTGA
Found at i:75331620 original size:46 final size:46
Alignment explanation
Indices: 75331526--75331689 Score: 149
Period size: 46 Copynumber: 3.5 Consensus size: 46
75331516 GATGTGTGCT
*
75331526 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCC
*
75331572 AGTGTAAGACATGTCTGGGACATGCATCGG-CAT-TGA-GACAAGATCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATG---AGAGCC
* * * * * *
75331618 AGTGTAAG-CTTGTCAGGGACACGGCATCGACCTCAATAT-ATGAAAGTC
1 AGTGTAAGACATGTCTGGGACA-TGCATCG-GC-C-ATATGATGAGAGCC
*
75331666 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
75331690 GCATTGACTT
Statistics
Matches: 95, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 14 0.15
46 49 0.52
48 12 0.13
49 12 0.13
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCC
Found at i:75332841 original size:26 final size:26
Alignment explanation
Indices: 75332812--75332889 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
75332802 CAACCTTAAC
* *
75332812 CCTAGAGGTATATCAGTAATTTTGCT
1 CCTAGAGGTATATCAGTAATTTTCCA
* * *
75332838 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTATATCAGT-AATTTTCCA
* *
75332865 CCTATAAAGGTATTTCAGTAATTTT
1 CC--TAGAGGTATATCAGTAATTTT
75332890 ATCAGTTTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
26 14 0.36
27 9 0.23
28 6 0.15
29 10 0.26
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (26 bp):
CCTAGAGGTATATCAGTAATTTTCCA
Found at i:75336756 original size:39 final size:39
Alignment explanation
Indices: 75336633--75336746 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
75336623 ATTACCAGCA
* *
75336633 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
75336672 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
75336711 CCAGCACGAAGCCTGCGGGACTCTAACCCGAATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
75336747 ATCTCAGCAC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.18
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:75350767 original size:25 final size:23
Alignment explanation
Indices: 75350733--75350778 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
75350723 TAAAGAAATG
75350733 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAA-AAAATGAT
*
75350758 GAAAACAAAAGAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAATG
75350779 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (23 bp):
GAAAAAAAAAGAAAAAAAATGAT
Found at i:75352172 original size:150 final size:150
Alignment explanation
Indices: 75351901--75352200 Score: 600
Period size: 150 Copynumber: 2.0 Consensus size: 150
75351891 TCTTTGTATG
75351901 TGGCTATTGAGCCGAAATTGCAAGTGTGATAAGTGTGACAGCCCAAAATTGACCCTAGTCGGGAA
1 TGGCTATTGAGCCGAAATTGCAAGTGTGATAAGTGTGACAGCCCAAAATTGACCCTAGTCGGGAA
75351966 GTGGTTTCGGGACCACAAAACCGAGTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
66 GTGGTTTCGGGACCACAAAACCGAGTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
75352031 GTGTGATAGTACTTGTATAA
131 GTGTGATAGTACTTGTATAA
75352051 TGGCTATTGAGCCGAAATTGCAAGTGTGATAAGTGTGACAGCCCAAAATTGACCCTAGTCGGGAA
1 TGGCTATTGAGCCGAAATTGCAAGTGTGATAAGTGTGACAGCCCAAAATTGACCCTAGTCGGGAA
75352116 GTGGTTTCGGGACCACAAAACCGAGTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
66 GTGGTTTCGGGACCACAAAACCGAGTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
75352181 GTGTGATAGTACTTGTATAA
131 GTGTGATAGTACTTGTATAA
75352201 AAATTTGATG
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (150 bp):
TGGCTATTGAGCCGAAATTGCAAGTGTGATAAGTGTGACAGCCCAAAATTGACCCTAGTCGGGAA
GTGGTTTCGGGACCACAAAACCGAGTCATAAAATTTAGTTAAAATTTTATTTGCATATCTTATAT
GTGTGATAGTACTTGTATAA
Found at i:75353815 original size:56 final size:56
Alignment explanation
Indices: 75353724--75353846 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
75353714 GAGATTGGCG
* * *
75353724 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
75353781 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
75353836 CTGAGTGTGCG
1 CTAAGTGTGCG
75353847 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:75353833 original size:27 final size:28
Alignment explanation
Indices: 75353724--75353846 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
75353714 GAGATTGGCG
* * * *
75353724 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
75353753 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
75353781 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
75353809 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75353836 CTGAGTGTGCG
1 CTAAGTGTGCG
75353847 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:75353857 original size:27 final size:27
Alignment explanation
Indices: 75353749--75353859 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
75353739 TAAATTGTAC
* * *
75353749 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
75353777 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
75353805 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
75353832 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
75353859 A
1 A
75353860 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:75354291 original size:155 final size:155
Alignment explanation
Indices: 75354009--75354318 Score: 602
Period size: 155 Copynumber: 2.0 Consensus size: 155
75353999 TGACAATTAT
*
75354009 AATTGAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTGT
1 AATTGAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCATTTAGTTGTATGATTGT
*
75354074 AACGAAAATAAAATGATGTATGAAAATGCCTTGAATATCCTATTGATTAGTATATGGAATGTGAA
66 AACGAAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAA
75354139 TGCATGACTTGGTATGAGATTGAAC
131 TGCATGACTTGGTATGAGATTGAAC
75354164 AATTGAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCATTTAGTTGTATGATTGT
1 AATTGAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCATTTAGTTGTATGATTGT
75354229 AACGAAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAA
66 AACGAAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAA
75354294 TGCATGACTTGGTATGAGATTGAAC
131 TGCATGACTTGGTATGAGATTGAAC
75354319 CGATAGGTTT
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
155 153 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (155 bp):
AATTGAAGTCATGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCATTTAGTTGTATGATTGT
AACGAAAATAAAATGATGTATGAAAATGCCTCGAATATCCTATTGATTAGTATATGGAATGTGAA
TGCATGACTTGGTATGAGATTGAAC
Found at i:75362051 original size:28 final size:28
Alignment explanation
Indices: 75361986--75362136 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
75361976 GAGATTGGCG
* * * *
75361986 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
75362015 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75362043 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
75362071 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
75362099 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75362126 CTGAGTGTGCG
1 CTAAGTGTGCG
75362137 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:75362150 original size:29 final size:27
Alignment explanation
Indices: 75362011--75362151 Score: 138
Period size: 28 Copynumber: 5.0 Consensus size: 27
75362001 TAAATTGTAC
* * *
75362011 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* * *
75362039 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
75362067 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
75362095 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
75362122 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
75362151 A
1 A
75362152 TTTTTGAATC
Statistics
Matches: 106, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
27 23 0.22
28 77 0.73
29 6 0.06
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:75364231 original size:56 final size:56
Alignment explanation
Indices: 75364164--75364283 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
75364154 TATTAGTTTA
75364164 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
75364220 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
75364276 TTGCCCAT
1 TTGCCCAT
75364284 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:75371739 original size:24 final size:25
Alignment explanation
Indices: 75371680--75371740 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 25
75371670 CCCCTCTAAG
75371680 TTTATTTCTATAATCATGTTATTAA
1 TTTATTTCTATAATCATGTTATTAA
** * **
75371705 TGAAATT-TATAATCATGTT-TTCT
1 TTTATTTCTATAATCATGTTATTAA
75371728 TTTATTTCTATAA
1 TTTATTTCTATAA
75371741 ATTGATTTGT
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
23 6 0.22
24 17 0.63
25 4 0.15
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (25 bp):
TTTATTTCTATAATCATGTTATTAA
Found at i:75378253 original size:49 final size:49
Alignment explanation
Indices: 75378168--75378300 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 49
75378158 TGGGTTAAGA
* * * * *
75378168 TGCCGACGCCATGTCCCAGGCATGGTCTTACACTGGCTTTCATATAGTGAG
1 TGCCGATGCCATGCCCCAGACA-GGTCTTACACTGGCTCTCATATA-TCAG
* * * *
75378219 -GCCGATGCCATGTCCTATACAGGTCTTACACTGGCTCTCATCTATCAG
1 TGCCGATGCCATGCCCCAGACAGGTCTTACACTGGCTCTCATATATCAG
*
75378267 TGTCGATGCCATGCCCCAGACAGGTCTTACACTG
1 TGCCGATGCCATGCCCCAGACAGGTCTTACACTG
75378301 ACACACAACA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 3 0.04
49 50 0.71
50 17 0.24
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (49 bp):
TGCCGATGCCATGCCCCAGACAGGTCTTACACTGGCTCTCATATATCAG
Found at i:75378427 original size:46 final size:48
Alignment explanation
Indices: 75378320--75378440 Score: 176
Period size: 46 Copynumber: 2.6 Consensus size: 48
75378310 AAGCTGACAC
* *
75378320 CATGTCCCAGACAGGTCTTACACTAGCTTGTATGTCGTGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATGTCGTGAGGCTGATG
* *
75378368 CATGTCCCAGACATGTCTTACACTGGCTCT-CATG-C-TGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGCATGTCGTGAGGCTGATG
75378414 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
75378441 ACATATATCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 36 0.54
47 1 0.01
48 29 0.43
49 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGCATGTCGTGAGGCTGATG
Found at i:75379161 original size:13 final size:13
Alignment explanation
Indices: 75379143--75379167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75379133 CTAAAAGTAC
75379143 AAAAATCATCAAG
1 AAAAATCATCAAG
75379156 AAAAATCATCAA
1 AAAAATCATCAA
75379168 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:75390704 original size:25 final size:25
Alignment explanation
Indices: 75390676--75390724 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
75390666 TTTAGTCTAT
* *
75390676 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
75390701 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
75390725 TCAAAAATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:75398611 original size:932 final size:932
Alignment explanation
Indices: 75396808--75399603 Score: 5520
Period size: 932 Copynumber: 3.0 Consensus size: 932
75396798 AATTGTGAAA
75396808 TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
1 TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
75396873 TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
66 TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
75396938 CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
131 CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
75397003 AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
196 AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
*
75397068 CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTATGAGACCCAA
261 CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTGTGAGACCCAA
*
75397133 AATTGATGCACCGTAGTTCGAATTAAAGCCAGCGATGTTCCAAATGCTTCAAACAGTGGACCAAT
326 AATTGATGCACCGTAGTTCGAATTAAAGCCAGCGATGTTCCAAATGCTTCAAACGGTGGACCAAT
75397198 TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
391 TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
75397263 TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
456 TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
75397328 TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATGGCAAGAATTGGTTG
521 TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATGGCAAGAATTGGTTG
75397393 AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
586 AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
75397458 ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGATTAAATGATTTATTACGAAG
651 ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGATTAAATGATTTATTACGAAG
75397523 TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
716 TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
*
75397588 TACAAAAATGGTGGTAGATGCTTTTTCAAATGAAGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
781 TACAAAAATGGTGGTAGATGCTTTTGCAAATGAAGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
*
75397653 ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAGTAATCGAATAACTACAAGA
846 ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAATAATCGAATAACTACAAGA
75397718 AGAAGAGTGGCAGGAGTACATG
911 AGAAGAGTGGCAGGAGTACATG
75397740 TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
1 TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
75397805 TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
66 TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
75397870 CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
131 CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
75397935 AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
196 AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
75398000 CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTGTGAGACCCAA
261 CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTGTGAGACCCAA
75398065 AATTGATGCACCGTAGTTCGAATTAAAGCCAGCGATGTTCCAAATGCTTCAAACGGTGGACCAAT
326 AATTGATGCACCGTAGTTCGAATTAAAGCCAGCGATGTTCCAAATGCTTCAAACGGTGGACCAAT
75398130 TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
391 TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
75398195 TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
456 TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
75398260 TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATGGCAAGAATTGGTTG
521 TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATGGCAAGAATTGGTTG
75398325 AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
586 AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
75398390 ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGATTAAATGATTTATTACGAAG
651 ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGATTAAATGATTTATTACGAAG
75398455 TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
716 TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
*
75398520 TACAAAAATGGTGGTAGATGCTTTTGCAAATGACGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
781 TACAAAAATGGTGGTAGATGCTTTTGCAAATGAAGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
75398585 ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAATAATCGAATAACTACAAGA
846 ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAATAATCGAATAACTACAAGA
75398650 AGAAGAGTGGCAGGAGTACATG
911 AGAAGAGTGGCAGGAGTACATG
75398672 TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
1 TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
75398737 TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
66 TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
75398802 CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
131 CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
75398867 AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
196 AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
75398932 CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTGTGAGACCCAA
261 CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTGTGAGACCCAA
*
75398997 AATTGATGCACCGTAGTTCGAATTAAAGCCAGTGATGTTCCAAATGCTTCAAACGGTGGACCAAT
326 AATTGATGCACCGTAGTTCGAATTAAAGCCAGCGATGTTCCAAATGCTTCAAACGGTGGACCAAT
75399062 TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
391 TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
75399127 TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
456 TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
*
75399192 TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATAGCAAGAATTGGTTG
521 TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATGGCAAGAATTGGTTG
75399257 AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
586 AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
*
75399322 ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGACTAAATGATTTATTACGAAG
651 ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGATTAAATGATTTATTACGAAG
75399387 TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
716 TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
75399452 TACAAAAATGGTGGTAGATGCTTTTGCAAATGAAGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
781 TACAAAAATGGTGGTAGATGCTTTTGCAAATGAAGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
75399517 ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAATAATCGAATAACTACAAGA
846 ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAATAATCGAATAACTACAAGA
75399582 AGAAGAGTGGCAGGAGTACATG
911 AGAAGAGTGGCAGGAGTACATG
75399604 AAGTTTATGT
Statistics
Matches: 1855, Mismatches: 9, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
932 1855 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (932 bp):
TTAATTATTTTTCAATTGATTTACTTATTTGTTTTTTTTTTAAATTTAGTTGTTTCTGTGATCTT
TGTTAGGTGTTTATGAACATAAACTGAATTATCAATCTACTTCCAATTAATCCTAAAATTGAGCA
CACCTTTAGACAAAGAAAAAGGGAACAAGTAGCTCATTGACAAGCTACAAAAATGAATCTTGCAC
AACAAGATCAAAGAGATGAAGCTGTTAATGCTCAAAATCCAGTCATTGTTACTAATGACAGAGAC
CGTGTCATATGCCAATATGCTATTCCTCTTTTCAATGAACTTAATCCAAGAATTGTGAGACCCAA
AATTGATGCACCGTAGTTCGAATTAAAGCCAGCGATGTTCCAAATGCTTCAAACGGTGGACCAAT
TTAGTGGGATGCCTAGTAAAGATCTACACCTTCATCTTCGCTTATTTATAGAAGTAAGGGACTCC
TTCAAATTGGTCGGAGTGACCAATGATGCTTTGAGATTGGAGTTATTCCAATACTTATTGAGAGA
TAGAGCGTGAGCATGGTTGAATTCCTTACCACCCGACTCCATAACCACATGGCAAGAATTGGTTG
AACGATTCTTAATGAAATATTTTCCTCCTAATAAAAATGCCAAGCTTCAGAATGAGATCATTACA
ATCCAGCAACTTGATGATGAATCTCTATATGAGGCATGAGAGCGATTAAATGATTTATTACGAAG
TGCCCTCACCATAGTTTACTACATTACATTCAATTGGAGACTTTCTACAATGGTTTTAATGCACA
TACAAAAATGGTGGTAGATGCTTTTGCAAATGAAGCTTTTCTTTCTAAGTGTTACAATGAAGCTT
ACAAAGTTCTTGAAAGAATTTCTAGCAACAATTATTAGTGGACGAATAATCGAATAACTACAAGA
AGAAGAGTGGCAGGAGTACATG
Found at i:75411001 original size:8 final size:8
Alignment explanation
Indices: 75410988--75411012 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75410978 AAATATTTTT
75410988 ATTTGTGA
1 ATTTGTGA
75410996 ATTTGTGA
1 ATTTGTGA
75411004 ATTTGTGA
1 ATTTGTGA
75411012 A
1 A
75411013 ATCATGAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (8 bp):
ATTTGTGA
Found at i:75413659 original size:46 final size:46
Alignment explanation
Indices: 75413609--75413877 Score: 286
Period size: 46 Copynumber: 5.8 Consensus size: 46
75413599 TGATTGAGCA
75413609 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75413655 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
75413700 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75413748 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75413793 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75413841 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75413878 GCGGGTTACA
Statistics
Matches: 189, Mismatches: 15, Indels: 38
0.78 0.06 0.16
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 8 0.04
46 90 0.48
47 58 0.31
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75413765 original size:93 final size:93
Alignment explanation
Indices: 75413606--75413870 Score: 487
Period size: 93 Copynumber: 2.8 Consensus size: 93
75413596 GGATGATTGA
75413606 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
75413671 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
75413699 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
75413764 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
75413792 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
75413856 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75413871 CTTATGGGCG
Statistics
Matches: 168, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
92 2 0.01
93 166 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75424035 original size:27 final size:27
Alignment explanation
Indices: 75424004--75424181 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75423994 TAAATTGTAC
75424004 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75424031 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75424057 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75424085 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75424113 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75424140 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75424167 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75424182 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75424118 original size:82 final size:81
Alignment explanation
Indices: 75424005--75424160 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75423995 AAATTGTACA
* *
75424005 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75424069 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75424086 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75424151 TGCGAGTTGA
65 TGCGAATTGA
75424161 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75424172 original size:82 final size:81
Alignment explanation
Indices: 75424001--75424181 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75423991 GATTAAATTG
* *
75424001 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75424066 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75424082 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75424146 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75424164 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75424182 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75430249 original size:59 final size:59
Alignment explanation
Indices: 75430157--75430273 Score: 207
Period size: 59 Copynumber: 2.0 Consensus size: 59
75430147 GAAGAACCGA
* **
75430157 TGCGTATCCTAGCTCGTGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTAAAG
1 TGCGTATCCTAGCTCGTGAAGTGAAGGAGTTGCGAAACAAAAGAGTTCCCCTAGTAAAG
75430216 TGCGTATCCTAGCTCGTGAAGTGAAGGAGTTGCGAAACAAAAGAGTTCCCCTAGTAAA
1 TGCGTATCCTAGCTCGTGAAGTGAAGGAGTTGCGAAACAAAAGAGTTCCCCTAGTAAA
75430274 AGTGTTATGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (59 bp):
TGCGTATCCTAGCTCGTGAAGTGAAGGAGTTGCGAAACAAAAGAGTTCCCCTAGTAAAG
Found at i:75431391 original size:79 final size:81
Alignment explanation
Indices: 75431255--75431437 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
75431245 TCGAATGATG
* *
75431255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
75431319 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
75431334 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
75431396 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
75431414 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75431438 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:75431453 original size:40 final size:40
Alignment explanation
Indices: 75431256--75431439 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
75431246 CGAATGATGT
* * * *
75431256 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
75431296 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
75431336 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75431374 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75431415 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75431440 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:75431461 original size:79 final size:79
Alignment explanation
Indices: 75431308--75431472 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
75431298 GGACTAAGAT
* **
75431308 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
75431373 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
75431387 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
75431450 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
75431466 CCGAAGG
1 CCGAAGG
75431473 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:75435605 original size:68 final size:64
Alignment explanation
Indices: 75435495--75435711 Score: 143
Period size: 68 Copynumber: 3.3 Consensus size: 64
75435485 ATACAAATAG
* * * * * *
75435495 TATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTGCAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAG-ACAAGAGAGC-A-AAGACA
75435559 TTA
63 -TA
* * * * *
75435562 TTATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGAGATA
1 -TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAGACAAGAGAGCAAAGACATA
* * * * * * * *
75435627 TATGTAGCTAGGTCGCATGCG-TGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAG
1 TATGTAGCTAGGTCACATG-GATGATACTAGGT---GCACACCATGTAGACAAGAGAGCAAAGAC
75435691 ATA
62 ATA
* *
75435694 AAT-TGGCTAGGTCACATG
1 TATGTAGCTAGGTCACATG
75435712 AGTGGTACTA
Statistics
Matches: 123, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
64 25 0.20
65 3 0.02
66 17 0.14
67 33 0.27
68 44 0.36
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAGACAAGAGAGCAAAGACATA
Found at i:75449821 original size:20 final size:19
Alignment explanation
Indices: 75449768--75449822 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
75449758 ATCATATGAG
* *
75449768 ACTGTTTTGTTATGGGCCA
1 ACTGTATTGATATGGGCCA
* *
75449787 ACTGCATTGAAATGGGCCCA
1 ACTGTATTGATATGGG-CCA
*
75449807 ACTGTGTTGATATGGG
1 ACTGTATTGATATGGG
75449823 TTAAGGCCCA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (19 bp):
ACTGTATTGATATGGGCCA
Found at i:75450817 original size:41 final size:41
Alignment explanation
Indices: 75450745--75450879 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
75450735 TCGAATTCTT
** **
75450745 GCACACTAAGTGCCAAAACATAGCCGAAGCTATTTTAATATC
1 GCACACTAAGTGCC-TTACATAGCCGAAGCTATTTCGATATC
* * * *
75450787 GCACACTAAGTGCCTTACATAGCCAAAGCTATCTCGGTCTC
1 GCACACTAAGTGCCTTACATAGCCGAAGCTATTTCGATATC
* *
75450828 GTACACTAAGTG-CTATATATAGCCGAAGCTATTTCGA-ATC
1 GCACACTAAGTGCCT-TACATAGCCGAAGCTATTTCGATATC
75450868 GCACACTAAGTG
1 GCACACTAAGTG
75450880 TCATATATAT
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 15 0.19
41 48 0.62
42 14 0.18
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (41 bp):
GCACACTAAGTGCCTTACATAGCCGAAGCTATTTCGATATC
Found at i:75453858 original size:54 final size:54
Alignment explanation
Indices: 75453773--75453899 Score: 193
Period size: 54 Copynumber: 2.4 Consensus size: 54
75453763 TAAGATAAAC
* * * *
75453773 ATTTATTCCAACAA-TTAATTAACTAAAATGAAATTAATTAATTAAGATGAGTA
1 ATTTATTCCAGCAACTTAATAAACTAAAATGAAATCAATTAACTAAGATGAGTA
* *
75453826 ATTTATTCCAGCAACTTAATAAACTAAGATGAACTCAATTAACTAAGATGAGTA
1 ATTTATTCCAGCAACTTAATAAACTAAAATGAAATCAATTAACTAAGATGAGTA
75453880 ATTTATTCCAGCAACTTAAT
1 ATTTATTCCAGCAACTTAAT
75453900 TAATTAAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 13 0.19
54 54 0.81
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.34
Consensus pattern (54 bp):
ATTTATTCCAGCAACTTAATAAACTAAAATGAAATCAATTAACTAAGATGAGTA
Found at i:75463480 original size:46 final size:46
Alignment explanation
Indices: 75463427--75463602 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
75463417 TATTTGGGCA
*
75463427 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75463473 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * * *
75463520 TCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
75463566 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75463603 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 64 0.60
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75463582 original size:93 final size:93
Alignment explanation
Indices: 75463423--75463595 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
75463413 GGGATATTTG
* *
75463423 GGCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75463488 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
75463516 GGCATCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75463581 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
75463596 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75466263 original size:27 final size:27
Alignment explanation
Indices: 75466233--75466546 Score: 412
Period size: 27 Copynumber: 11.6 Consensus size: 27
75466223 TTAGCTTACC
*
75466233 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75466260 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75466287 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
75466314 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75466341 AAATTACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
75466368 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75466395 AAATTACCAGAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75466422 AAATTACCAAAATACCCGTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
75466449 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75466476 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75466503 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
75466530 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
75466547 TCGACCTGTA
Statistics
Matches: 245, Mismatches: 42, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 245 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75466306 original size:54 final size:54
Alignment explanation
Indices: 75466233--75466618 Score: 443
Period size: 54 Copynumber: 7.1 Consensus size: 54
75466223 TTAGCTTACC
*
75466233 AAATTACCAAAATATCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
75466287 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
75466341 AAATTACCAAAATACCCCTGTTTTGTAAAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * *
75466395 AAATTACCAGAATACCCCTAGTTTGTAAAATTACCAAAATACCCGTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
75466449 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGGTTTATA
* * * * * *** *
75466503 AAATTACCAAAATATCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*** ** * * *
75466557 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
75466611 GAATTACC
1 AAATTACC
75466619 GTTTCAGAGG
Statistics
Matches: 281, Mismatches: 48, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
53 4 0.01
54 276 0.98
55 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:75466557 original size:81 final size:81
Alignment explanation
Indices: 75466233--75466618 Score: 409
Period size: 81 Copynumber: 4.8 Consensus size: 81
75466223 TTAGCTTACC
* * * * * *
75466233 AAATTACCAAAATATCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
75466298 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * ** * * *
75466314 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGTTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
** * *
75466379 ATACCTTTTGTTTATA
66 ATACCCCTGGTTTGTA
* * *
75466395 AAATTACCAGAATACCCCTAGTTTGTAAAATTACCAAAATACCCGTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
75466460 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * **
75466476 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCC-TGATTTGTGAAATTACTGA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTTGATTTGTAAAATTACCAA
***
75466540 AATA-CCCTCGACCTGTA
65 AATACCCCT-GGTTTGTA
*** * * * * *
75466557 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATAGAATTACC
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACC
75466619 GTTTCAGAGG
Statistics
Matches: 257, Mismatches: 44, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
80 12 0.05
81 242 0.94
82 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:75466615 original size:27 final size:27
Alignment explanation
Indices: 75466233--75466618 Score: 359
Period size: 27 Copynumber: 14.3 Consensus size: 27
75466223 TTAGCTTACC
*
75466233 AAATTACCAAAATATCCC-TGGTTTGTA
1 AAATTACCAAAATA-CCCTTGATTTGTA
* * *
75466260 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
75466287 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* **
75466314 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
75466341 AAATTACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
75466368 AAATTACTAAAATACCTTTTG-TTTATA
1 AAATTACCAAAATACC-CTTGATTTGTA
* *
75466395 AAATTACCAGAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
75466422 AAATTACCAAAATACCCGTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
75466449 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
75466476 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
*
75466503 AAATTACCAAAATATCCC-TGATTTGTG
1 AAATTACCAAAATA-CCCTTGATTTGTA
** * **
75466530 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * *
75466557 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
75466584 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
*
75466611 GAATTACC
1 AAATTACC
75466619 GTTTCAGAGG
Statistics
Matches: 303, Mismatches: 47, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.02
27 290 0.96
28 6 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:75466733 original size:27 final size:27
Alignment explanation
Indices: 75466703--75467672 Score: 1186
Period size: 27 Copynumber: 35.6 Consensus size: 27
75466693 CGATTTACAA
*
75466703 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75466730 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75466757 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75466784 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
75466811 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
75466838 AATTATCGCAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75466865 AGTTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75466892 AAATACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
75466919 AATTATCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
75466946 AATTGCCGGAATACCCCTGTACTGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75466973 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75467000 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467027 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467054 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
75467081 AATTATTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75467108 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75467135 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75467162 AATTACCGAAATACCCTTGT-GAGGTAG
1 AATTACCGAAATACCCCTGTAG-GGTAG
* *
75467189 AATTACCGAAATACCCTTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467216 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
75467243 AATAACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
75467270 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75467297 AATTACCGAAATACCCATGTAGGGTAAAACAGGG
1 AATTACCGAAATACCCCTGTAGGGT-----A--G
* ** *
75467331 TAAAATTACCAAAATACCCCTGTAGGGTAG
1 --AATTACCG-AAATACCCCTGTAGGGTAG
*
75467361 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467388 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467415 AATTACCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467442 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
***
75467469 AATTACCGAAATACCCCTGTAAAATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75467496 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467523 AATTATCGAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467550 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467577 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
75467604 AATTATCTATATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75467631 AATTACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
**
75467658 AATTATTGAAATACC
1 AATTACCGAAATACC
75467673 ATTTTGCCCC
Statistics
Matches: 812, Mismatches: 119, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.00
27 782 0.96
28 5 0.01
30 1 0.00
32 2 0.00
34 1 0.00
36 4 0.00
37 16 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:75467835 original size:16 final size:16
Alignment explanation
Indices: 75467814--75467845 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75467804 TAAATATGGG
75467814 CATGACATCCTGCATA
1 CATGACATCCTGCATA
*
75467830 CATGACATGCTGCATA
1 CATGACATCCTGCATA
75467846 GGTTGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (16 bp):
CATGACATCCTGCATA
Found at i:75468053 original size:22 final size:22
Alignment explanation
Indices: 75468020--75468078 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
75468010 CACATTATCG
75468020 ATGGC-TCTATGCCAACCTAAAT
1 ATGGCTTC-ATGCCAACCTAAAT
* * * *
75468042 ATGGCTTCATGCCATCTTGACT
1 ATGGCTTCATGCCAACCTAAAT
*
75468064 ATGGCTTCGTGCCAA
1 ATGGCTTCATGCCAA
75468079 ACGTATTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (22 bp):
ATGGCTTCATGCCAACCTAAAT
Found at i:75468102 original size:27 final size:27
Alignment explanation
Indices: 75468062--75468113 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
75468052 GCCATCTTGA
*
75468062 CTATGGCTTCGTGCCAAACGTATTTAT
1 CTATGGCTTCGTGCCAAACATATTTAT
*
75468089 CTATGGCTAT-GTGCCTAACATATTT
1 CTATGGCT-TCGTGCCAAACATATTT
75468114 TTTTGACGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (27 bp):
CTATGGCTTCGTGCCAAACATATTTAT
Found at i:75468267 original size:27 final size:27
Alignment explanation
Indices: 75468237--75468301 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
75468227 ATTCTGTTAA
*
75468237 GTGGCTTTGCCAC-ATTATCTGATTCTG
1 GTGGCTTTGCCACAAATATCTG-TTCTG
*
75468264 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCACAAATATCTGTTCTG
*
75468291 GAGGCTTTGCC
1 GTGGCTTTGCC
75468302 TCAACTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 26 0.79
28 7 0.21
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (27 bp):
GTGGCTTTGCCACAAATATCTGTTCTG
Found at i:75468491 original size:30 final size:30
Alignment explanation
Indices: 75468456--75468514 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
75468446 TCTGCTTTTG
*
75468456 ATTCTGTTACCTAATACTGATTCTGATTCA
1 ATTCTGTCACCTAATACTGATTCTGATTCA
*
75468486 ATTCTGTCACCTAATTCTGATTCTGATTC
1 ATTCTGTCACCTAATACTGATTCTGATTC
75468515 TGATTCTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (30 bp):
ATTCTGTCACCTAATACTGATTCTGATTCA
Found at i:75483291 original size:40 final size:40
Alignment explanation
Indices: 75483166--75483336 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
75483156 GATAACTGGA
* * *
75483166 CTAAGATCCGAAGGCATTCGTGTGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
* * * * *
75483206 CTATGTCCCGAAGGCA-TTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGG
*
75483245 CGAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
*
75483285 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
75483324 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
75483337 ATACTTGGGT
Statistics
Matches: 111, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
38 3 0.03
39 41 0.37
40 65 0.59
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
Found at i:75483336 original size:79 final size:79
Alignment explanation
Indices: 75483168--75483323 Score: 224
Period size: 79 Copynumber: 2.0 Consensus size: 79
75483158 TAACTGGACT
* * * * *
75483168 AAGATCCGAAGGCATTCGTGTGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTATGCTAGTG
1 AAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTATGCGAGTG
75483233 ATTATATCCGGGCG
66 ATTATATCCGGGCG
* *
75483247 AAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 AAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA-TTATGCGAG-
75483312 TG-TTATATCCGG
64 TGATTATATCCGG
75483324 CTAAATCCCG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
79 49 0.72
80 17 0.25
81 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
AAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTATGCGAGTG
ATTATATCCGGGCG
Found at i:75491158 original size:40 final size:40
Alignment explanation
Indices: 75491098--75491234 Score: 188
Period size: 40 Copynumber: 3.5 Consensus size: 40
75491088 CGGATGATAA
* * ** *
75491098 CCGGACTAAGATCCGAAGGCATCCGTGCGAGTCGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
75491138 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
75491178 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
75491218 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
75491235 ATACTTGGGT
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 13 0.15
40 74 0.84
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:75507756 original size:43 final size:44
Alignment explanation
Indices: 75507609--75507766 Score: 150
Period size: 43 Copynumber: 3.7 Consensus size: 44
75507599 TATGTGTGAT
* * * * *
75507609 CGTGTAAGACTACGTCTGGGACATTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGACTTA
* * *
75507653 CGTGTAAGACCA-TTCTGGGACGTTGGAATCG-TATTTGACTT-
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGACTTA
75507694 CGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGACTTA
* *
75507737 CATGTAAGACCACGACTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
75507767 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 12 0.13
42 23 0.24
43 48 0.51
44 12 0.13
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGACTTA
Found at i:75507759 original size:85 final size:85
Alignment explanation
Indices: 75507608--75507763 Score: 192
Period size: 85 Copynumber: 1.8 Consensus size: 85
75507598 ATATGTGTGA
* * * ** *
75507608 TCGTGTAAGACTACGTCTGGGACATTGGCATCGACTTATGATTTACGTGTAAGACCATTCTGGGA
1 TCGTGTAAGACTACGTCTAGGACAGTGGCATCGACTTATGATTTACATGTAAGACCAGACTAGGA
75507673 CGTTGGAATCGTATTTGACT
66 CGTTGGAATCGTATTTGACT
* *
75507693 TCGTGTAAGAC-CCTGTCTAGGACAGTGGCATCGA-TATTTGA-TTACATGTAAGACCACGACTA
1 TCGTGTAAGACTAC-GTCTAGGACAGTGGCATCGACT-TATGATTTACATGTAAGACCA-GACTA
75507755 GGACGTTGG
63 GGACGTTGG
75507764 CATTGTACGA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
84 16 0.27
85 44 0.73
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACTACGTCTAGGACAGTGGCATCGACTTATGATTTACATGTAAGACCAGACTAGGA
CGTTGGAATCGTATTTGACT
Found at i:75510858 original size:40 final size:42
Alignment explanation
Indices: 75510810--75510925 Score: 173
Period size: 40 Copynumber: 2.8 Consensus size: 42
75510800 GTTCTCGATA
* *
75510810 TAATATATATATCCAGGTTAAATCCCACAGGCTTCGTGCTAG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAG
* *
75510852 T-A-ATATATATCCGGGTTAAATACCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAG
*
75510892 TAATATATATATCCGGGTTAAGTCCCGCAGGCTT
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTT
75510926 AGTGTTGGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
40 35 0.53
41 2 0.03
42 29 0.44
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAG
Found at i:75510935 original size:42 final size:42
Alignment explanation
Indices: 75510810--75510941 Score: 178
Period size: 42 Copynumber: 3.2 Consensus size: 42
75510800 GTTCTCGATA
* * *
75510810 TAATATATATATCCAGGTTAAATCCCACAGGCTTCGTGCTAG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
75510852 T-A-ATATATATCCGGGTTAAATACCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
* * *
75510892 TAATATATATATCCGGGTTAAGTCCCGCAGGCTTAGTGTTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
75510934 TACTATAT
1 TAATATAT
75510942 CCGGACTTCA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 35 0.44
41 2 0.03
42 42 0.53
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
Found at i:75520257 original size:32 final size:32
Alignment explanation
Indices: 75520216--75520281 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
75520206 CGGGTCTCTA
*
75520216 TCCGAAACAATAGATATAGGTACACCATGTAG
1 TCCGAAACAATAGATATAGGCACACCATGTAG
*
75520248 TCCGAAACAATGGATATAGGCACACCATGTAG
1 TCCGAAACAATAGATATAGGCACACCATGTAG
75520280 TC
1 TC
75520282 TCACAATCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (32 bp):
TCCGAAACAATAGATATAGGCACACCATGTAG
Found at i:75520358 original size:32 final size:32
Alignment explanation
Indices: 75520313--75520373 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
75520303 ATTCAGTTAG
*
75520313 CTTACCAAGTGAATAGTCTGAACATATCGAAA
1 CTTACCAAATGAATAGTCTGAACATATCGAAA
75520345 CTTACCAAATGAATAGTCTGAACATATCG
1 CTTACCAAATGAATAGTCTGAACATATCG
75520374 GAACAAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (32 bp):
CTTACCAAATGAATAGTCTGAACATATCGAAA
Found at i:75523191 original size:24 final size:24
Alignment explanation
Indices: 75523126--75523196 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
75523116 CTGTCAAGAG
*
75523126 AGGATTTAGGAGTTGATAAGGAAT
1 AGGATTTAGGAGTTGATAAGGGAT
75523150 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* **
75523174 AGGATTTAAGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
75523197 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.38, C:0.01, G:0.35, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:75524655 original size:27 final size:27
Alignment explanation
Indices: 75524615--75524693 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
75524605 AGGAACCTTC
*
75524615 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
75524642 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* * *
75524670 CTAGT-GATCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
75524694 TTTGGCAGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.20
27 31 0.67
28 6 0.13
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:75532489 original size:27 final size:27
Alignment explanation
Indices: 75532447--75532550 Score: 97
Period size: 27 Copynumber: 3.9 Consensus size: 27
75532437 AGGAAGCGTC
*
75532447 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTAAT
* **
75532474 CTGGTGGCTCTACCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTAAT
* *
75532501 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCT-AAT
* *
75532529 CTGGT-GATCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACAATTATCT
75532551 GTTCTGGCAG
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 10 0.16
27 45 0.70
28 9 0.14
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTAAT
Found at i:75532545 original size:54 final size:53
Alignment explanation
Indices: 75532447--75532557 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 53
75532437 AGGAAGCGTC
* *
75532447 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGATCTACCACAT-TATCTGTT
* * * **
75532501 CTGGTGGCTCTGCCACGATTATCTGTATCTGGT-GATCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-AATCTGGTGGATCTACCACATTATCTGTT
75532554 CTGG
1 CTGG
75532558 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 11 0.22
54 31 0.63
55 7 0.14
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGGATCTACCACATTATCTGTT
Found at i:75545136 original size:45 final size:46
Alignment explanation
Indices: 75545044--75545155 Score: 153
Period size: 45 Copynumber: 2.5 Consensus size: 46
75545034 GTATTTCGCA
* *
75545044 TGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACTGGCATTATAGCT
1 TGCTAGGCTCGAAGGCCCGAATAGTCATCTCACCGGCATTATAGCT
75545087 TGCTAGGCTCGAAGGCCCGAATAGT-ATCTCACCGGCATTATAGGC-
1 TGCTAGGCTCGAAGGCCCGAATAGTCATCTCACCGGCATTATA-GCT
*
75545132 TGCTAGGCTCCAAGGCCCGAATAG
1 TGCTAGGCTCGAAGGCCCGAATAG
75545156 CACTGTACGA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
43 13 0.21
44 5 0.08
45 41 0.66
46 3 0.05
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (46 bp):
TGCTAGGCTCGAAGGCCCGAATAGTCATCTCACCGGCATTATAGCT
Found at i:75547004 original size:78 final size:78
Alignment explanation
Indices: 75546916--75547066 Score: 284
Period size: 78 Copynumber: 1.9 Consensus size: 78
75546906 ATGGCCGGCT
*
75546916 ACTACAAATTAAAGTGGGAAATTTGACATGCAGGTCCACCTATTTTAAACCATAAAATATTTGGC
1 ACTACAAATTAAAGTGGGAAATTTGACATGCAAGTCCACCTATTTTAAACCATAAAATATTTGGC
75546981 CACTACAATGGCC
66 CACTACAATGGCC
*
75546994 ACTACAAATTAAAGTGGGAAATTTGCCATGCAAGTCCACCTATTTTAAACCATAAAATATTTGGC
1 ACTACAAATTAAAGTGGGAAATTTGACATGCAAGTCCACCTATTTTAAACCATAAAATATTTGGC
75547059 CACTACAA
66 CACTACAA
75547067 ATTAACCTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (78 bp):
ACTACAAATTAAAGTGGGAAATTTGACATGCAAGTCCACCTATTTTAAACCATAAAATATTTGGC
CACTACAATGGCC
Found at i:75549404 original size:29 final size:30
Alignment explanation
Indices: 75549347--75549404 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
75549337 CTTTTGGAAA
* **
75549347 TATTTACAAAAAGAGGCATCTAGTTTTTAT
1 TATTTACAAAAAGAGGCATCCAAATTTTAT
*
75549377 TATTTACGAAAAGA-GCATCCAAATTTTA
1 TATTTACAAAAAGAGGCATCCAAATTTTA
75549405 AAAATACTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCATCCAAATTTTAT
Found at i:75576480 original size:40 final size:40
Alignment explanation
Indices: 75576425--75576648 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
75576415 TATTCGGATG
75576425 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75576465 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * * *
75576508 ATACCCGGGCTATGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* ** * *
75576548 ATATCCGGGCTAAGTCTCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
75576588 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
75576628 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
75576649 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.09
40 108 0.68
42 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:75576569 original size:83 final size:80
Alignment explanation
Indices: 75576429--75576648 Score: 275
Period size: 83 Copynumber: 2.7 Consensus size: 80
75576419 CGGATGATAT
* **
75576429 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
75576494 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* * *
75576512 CCGGGCTATGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
75576577 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
** * *
75576592 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTG-CTATAT-CTGGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCGAAG
75576649 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
79 16 0.13
80 41 0.34
81 2 0.02
83 62 0.51
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:75584705 original size:40 final size:40
Alignment explanation
Indices: 75584650--75584873 Score: 272
Period size: 40 Copynumber: 5.5 Consensus size: 40
75584640 TGTTTGGATG
*
75584650 ATATCCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
75584690 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
75584733 AT-TCCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAT-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
75584773 ATATCCGGGCTAAGTCTCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
75584813 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
75584853 ATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAG
75584874 ATACTTTGGT
Statistics
Matches: 161, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 12 0.07
40 110 0.68
41 2 0.01
42 1 0.01
43 36 0.22
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:75584794 original size:83 final size:80
Alignment explanation
Indices: 75584650--75584873 Score: 276
Period size: 83 Copynumber: 2.8 Consensus size: 80
75584640 TGTTTGGATG
* *
75584650 ATATCCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
**
75584715 TTTGTGCGAGTAGTTG-CT
66 TTCATGC---TAG-TGACT
* *
75584733 AT-TCCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGC
1 ATAT-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGC
75584797 ATTCATGCTAGTGACT
65 ATTCATGCTAGTGACT
* * * *
75584813 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
75584874 ATACTTTGGT
Statistics
Matches: 126, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
79 14 0.11
80 44 0.35
81 3 0.02
82 1 0.01
83 64 0.51
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:75587236 original size:25 final size:25
Alignment explanation
Indices: 75587208--75587292 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
75587198 ATGATTTCCT
75587208 TGCCTTATAGAACTTATCAATGCCA
1 TGCCTTATAGAACTTATCAATGCCA
** * *
75587233 TGCCTTGGCAT-GGTCTTA-CATGATTTCCT
1 TGCCTT---ATAGAACTTATCA--A-TGCCA
75587262 TGCCTTATAGAACTTATCAATGCCA
1 TGCCTTATAGAACTTATCAATGCCA
75587287 TGCCTT
1 TGCCTT
75587293 GGCATGGTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 15 0.34
26 5 0.11
27 10 0.23
28 5 0.11
29 9 0.20
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (25 bp):
TGCCTTATAGAACTTATCAATGCCA
Found at i:75587251 original size:54 final size:54
Alignment explanation
Indices: 75587055--75587579 Score: 502
Period size: 54 Copynumber: 9.9 Consensus size: 54
75587045 TTTCCTTTTT
* * * * * * * *
75587055 GAACTTACCATTGCCATGTCTTGACATGGTTTTACGTGGTATCCTTGCCTTCT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
* * * **
75587108 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG-TGACCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCC-TTGCCTTATA
* * *
75587162 GTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
*
75587217 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
* *
75587271 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGA--T--AT-CCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
* ** * * * *
75587319 ---CTTACCAAATGCCATGTTCC-AAATATGGTCTTACATGGTATCCTTGTCTTAT-
1 GAACTTATC-AATGCCATG--CCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
* * * *** *
75587371 GAACTCACCAATGCCATGTCTTGACATGGTCTTACAT-AGGACCTTTTCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCC-TTGCCTTATA
* * * **
75587425 GTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTTTCTTATA
1 G-AACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
* **
75587480 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTTTCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
* *
75587534 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTT
75587580 ATCTTACTAA
Statistics
Matches: 402, Mismatches: 50, Indels: 39
0.82 0.10 0.08
Matches are distributed among these distances:
45 5 0.01
46 9 0.02
47 13 0.03
48 2 0.00
49 7 0.02
50 1 0.00
51 1 0.00
52 12 0.03
53 60 0.15
54 193 0.48
55 93 0.23
56 6 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
Found at i:75587425 original size:263 final size:263
Alignment explanation
Indices: 75587078--75587631 Score: 966
Period size: 263 Copynumber: 2.1 Consensus size: 263
75587068 CCATGTCTTG
* * * * *
75587078 ACATGGTTTTACGTGGTATCCTTGCCTTCTGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
75587143 ATGTGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCT
66 ATGTGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCT
75587208 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGA
131 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGA
75587273 ACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTC
196 ACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTC
75587338 CAA
261 CAA
* *
75587341 ATATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
*
75587406 ATAG-GACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCC
66 AT-GTGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCC
** **
75587470 TTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTTTCTTATAG
130 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAG
*
75587535 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACTAAATGCCATGTT
195 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTT
75587600 CCAA
260 CCAA
*
75587604 ACATGGTCTTACATAGTATCCTTGTCTT
1 ACATGGTCTTACATGGTATCCTTGTCTT
75587632 TCTAAATGTT
Statistics
Matches: 275, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
263 274 1.00
264 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (263 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
ATGTGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCT
TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGA
ACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTC
CAA
Found at i:75587464 original size:209 final size:210
Alignment explanation
Indices: 75587133--75587531 Score: 592
Period size: 209 Copynumber: 1.9 Consensus size: 210
75587123 ATGCCTTGGC
*
75587133 ATGGTCTTACATGTGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTAC
1 ATGGTCTTACATGTGACCTTTGCCTTATAGTAACTCACCAATGCCATGTCTTAACATGGTCTTAC
*** * **
75587198 ATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
66 ATGAGGACCTTGCCTTATAGAACTCATCAATGCCATGCCTTAACATGGTCTTACATGATTTCCTT
75587263 GCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAA
131 GCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAA
75587328 TGCCATGTTCCAAAT
196 TGCCATGTTCCAAAT
* *
75587343 ATGGTCTTACATG-GTATCC-TTGTCTTAT-G-AACTCACCAATGCCATGTCTTGACATGGTCTT
1 ATGGTCTTACATGTG-A-CCTTTGCCTTATAGTAACTCACCAATGCCATGTCTTAACATGGTCTT
* *
75587404 ACAT-AGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTT
64 ACATGAGGACC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTAACATGGTCTTACATGATTT
** * *
75587468 CCTTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTTTCTTA
127 CCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
75587532 TAGAACTTAT
Statistics
Matches: 170, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
207 3 0.02
208 44 0.26
209 99 0.58
210 22 0.13
211 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (210 bp):
ATGGTCTTACATGTGACCTTTGCCTTATAGTAACTCACCAATGCCATGTCTTAACATGGTCTTAC
ATGAGGACCTTGCCTTATAGAACTCATCAATGCCATGCCTTAACATGGTCTTACATGATTTCCTT
GCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAA
TGCCATGTTCCAAAT
Found at i:75587595 original size:209 final size:202
Alignment explanation
Indices: 75587116--75587619 Score: 530
Period size: 209 Copynumber: 2.4 Consensus size: 202
75587106 CTGAACTCAC
* * *
75587116 CAATGCCATGCCTTGGCATGGTCTTACATGTGACCTTTGCCTTATAGTAACTCATCAATGCCATG
1 CAATGCCATGCCTTGGCATGGTCTTACA--TGA--TAT-CCTTAT-CTTACTCA-CAATGCCATG
*** * **
75587181 TCTTAACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGG
59 TCTTAACATGGTCTTACAT-AGGACCTTGCCTTATAGAACTCATCAATGCCATGCCTTAACATGG
75587246 TCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGAT
123 TCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGAT
75587311 ATCCTTATCTTACCA
188 ATCCTTATCTTACCA
**** * *
75587326 -AATGCCATGTTCC-AAATATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATG
1 CAATGCCATG--CCTTGGCATGGTCTTACATGATATCCTTATC-T-T--ACTCA-CAATGCCATG
* * *
75587389 TCTTGACATGGTCTTACATAGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTAACATG
59 TCTTAACATGGTCTTACATAGGACC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTAACATG
**
75587454 GTCTTACATGATTTCCTTTTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGA
122 GTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGA
* * *
75587519 TTTCCTTTTCTTATAGAACTTA
187 TATCCTTATC-T-T---AC-CA
**
75587541 TCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACT-A-AATGCCATGTTCCAA
1 -CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACTCACAATGCCATG-TCTTA
75587604 ACATGGTCTTACATAG
64 ACATGGTCTTACATAG
75587620 TATCCTTGTC
Statistics
Matches: 243, Mismatches: 33, Indels: 36
0.78 0.11 0.12
Matches are distributed among these distances:
205 6 0.02
206 2 0.01
207 3 0.01
208 45 0.19
209 112 0.46
210 30 0.12
211 4 0.02
212 3 0.01
214 3 0.01
215 4 0.02
216 22 0.09
217 9 0.04
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (202 bp):
CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACTCACAATGCCATGTCTTAAC
ATGGTCTTACATAGGACCTTGCCTTATAGAACTCATCAATGCCATGCCTTAACATGGTCTTACAT
GATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTAT
CTTACCA
Found at i:75587612 original size:47 final size:47
Alignment explanation
Indices: 75587558--75587679 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
75587548 CATGCCTTGG
*
75587558 CATGGTCTTACATGATATCCTTATCTTACTAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACTAAATGCCATGTTCCAAA
* **
75587605 CATGGTCTTACAT-AGTATCCTTGTCTTTCTAAATGTTATGTTCCAAA
1 CATGGTCTTACATGA-TATCCTTGTCTTACTAAATGCCATGTTCCAAA
*
75587652 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
75587680 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACTAAATGCCATGTTCCAAA
Found at i:75590844 original size:43 final size:42
Alignment explanation
Indices: 75590789--75590955 Score: 194
Period size: 43 Copynumber: 4.0 Consensus size: 42
75590779 ATATCGTACA
* * *
75590789 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATCG
* * *
75590832 ATGCCACTGTCCCAGACAAGGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATCG
75590873 ATGCCAATGT-CCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATCG
* ** * *
75590915 ATGCCAATGTCCTAGATGTGGTCTTGCACGAGAACACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGA-ATCACATAT
75590956 TGGAAATCCT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
40 18 0.17
41 19 0.18
42 21 0.20
43 48 0.45
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATCG
Found at i:75601784 original size:15 final size:15
Alignment explanation
Indices: 75601761--75601820 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
75601751 GTATCATATC
*
75601761 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
75601776 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * * *
75601791 CTGGGTTTCTCTATC
1 TTGGATTTCTTTATT
75601806 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
75601821 CATTTTTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:75601798 original size:30 final size:30
Alignment explanation
Indices: 75601762--75601821 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
75601752 TATCATATCT
* *
75601762 TGGGTTTCTTTATTTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
75601792 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
75601822 ATTTTTCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.10, C:0.13, G:0.17, T:0.60
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:75607570 original size:36 final size:36
Alignment explanation
Indices: 75607530--75607602 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
75607520 GTTTAATTCT
75607530 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
1 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
75607566 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
1 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
75607602 A
1 A
75607603 GCCTTACTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.38
Consensus pattern (36 bp):
AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
Found at i:75608128 original size:32 final size:32
Alignment explanation
Indices: 75608083--75608170 Score: 133
Period size: 32 Copynumber: 2.8 Consensus size: 32
75608073 CAACCCATCA
* * *
75608083 CAATCTCAATTGGGCCTAACCCATCAT-AGAAT
1 CAATATCAGTTGGGCCTAACCCAT-ATCAGAAG
75608115 CAATATCAGTTGGGCCTAACCCATATCAGAAG
1 CAATATCAGTTGGGCCTAACCCATATCAGAAG
75608147 CAATATCAGTTGGGCCTAACCCAT
1 CAATATCAGTTGGGCCTAACCCAT
75608171 TTCAATATCA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
31 2 0.04
32 50 0.96
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (32 bp):
CAATATCAGTTGGGCCTAACCCATATCAGAAG
Found at i:75608142 original size:26 final size:26
Alignment explanation
Indices: 75608113--75608180 Score: 73
Period size: 32 Copynumber: 2.4 Consensus size: 26
75608103 CCATCATAGA
75608113 ATCAATATCAGTTGGGCCTAACCCAT
1 ATCAATATCAGTTGGGCCTAACCCAT
75608139 ATCAGAAGCAATATCAGTTGGGCCTAACCCAT
1 AT------CAATATCAGTTGGGCCTAACCCAT
*
75608171 TTCAATATCA
1 ATCAATATCA
75608181 AACCCATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
26 10 0.29
32 25 0.71
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAACCCAT
Found at i:75612192 original size:42 final size:43
Alignment explanation
Indices: 75612130--75612224 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
75612120 ATGATTTATT
* * * * * *
75612130 TGTAAGACCATGTCTTGGACATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCATATCTGGGACAGTGCCATCGATAATTGATTACA
*
75612172 TGTAAGACCCTATCTGGGACAGTGCCATCGATAATTGATTACA
1 TGTAAGACCATATCTGGGACAGTGCCATCGATAATTGATTACA
75612215 TGTAAGACCA
1 TGTAAGACCA
75612225 CGTCTAGGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGTGCCATCGATAATTGATTACA
Found at i:75618250 original size:28 final size:28
Alignment explanation
Indices: 75618199--75618312 Score: 106
Period size: 33 Copynumber: 3.9 Consensus size: 28
75618189 AGAATAACAC
*
75618199 AGTCTGGGCCTAAG-CCTAGATCAGTAAT
1 AGTCTGGGCCTAAGCCCTATA-CAGTAAT
* *
75618227 AGTTTGGGCCTAAGCCCTATTCAGTATCAGT
1 AGTCTGGGCCTAAGCCCTATACAGTA--A-T
*
75618258 ACAGTCTGGGCCTTAGCCCTATACAGTAAT
1 --AGTCTGGGCCTAAGCCCTATACAGTAAT
* *
75618288 AGTGT-GGCCTAAGCCCAATACAGTA
1 AGTCTGGGCCTAAGCCCTATACAGTA
75618313 TCAATACAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
27 18 0.25
28 22 0.31
29 4 0.06
30 2 0.03
31 2 0.03
33 23 0.32
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (28 bp):
AGTCTGGGCCTAAGCCCTATACAGTAAT
Found at i:75618321 original size:60 final size:61
Alignment explanation
Indices: 75618197--75618321 Score: 173
Period size: 60 Copynumber: 2.1 Consensus size: 61
75618187 AGAGAATAAC
* * * *
75618197 ACAGTCTGGGCCTAAGCCTAGATCAGTAATAGTTTGGGCCTAAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCTAGATCAGTAATAGTGTGGGCCTAAGCCCAATACAGTATCAAT
* *
75618258 ACAGTCTGGGCCTTAGCCCTATA-CAGTAATAGTGT-GGCCTAAGCCCAATACAGTATCAAT
1 ACAGTCTGGGCCTAAG-CCTAGATCAGTAATAGTGTGGGCCTAAGCCCAATACAGTATCAAT
75618318 ACAG
1 ACAG
75618322 AGCAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
60 26 0.46
61 26 0.46
62 5 0.09
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (61 bp):
ACAGTCTGGGCCTAAGCCTAGATCAGTAATAGTGTGGGCCTAAGCCCAATACAGTATCAAT
Found at i:75628441 original size:43 final size:42
Alignment explanation
Indices: 75628288--75628442 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 42
75628278 TGTTTTCGTA
* *
75628288 TAAGACCACATCTGGGACGTTGGCATCGAGT-TATGATTTATGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGA-TAT-TGA-TTACGTG
* * * *** *
75628332 TAAGACCATGTCTTGGACATCAACATC-ATATTGGATTTCGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGATATT-GATTACGTG
* *
75628374 TAAGACC-CTGTCTAGGACAG-TGGCATCGATAATTGATTACATG
1 TAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-ATTGATTACGTG
75628417 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
75628443 TGTACAAGCT
Statistics
Matches: 85, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
42 27 0.32
43 34 0.40
44 24 0.28
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACGTTGGCATCGATATTGATTACGTG
Found at i:75630742 original size:35 final size:35
Alignment explanation
Indices: 75630696--75630788 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 35
75630686 ACTGATACTT
* *
75630696 TGATTTGCATGTTAAGCATGCTATTATTATTATTA
1 TGATTCGCATGTTAAGCATGCTATTATTATGATTA
* * *
75630731 TGATTCGCATGTTGACCATGCTATTATTATGATTC
1 TGATTCGCATGTTAAGCATGCTATTATTATGATTA
*
75630766 TGAATCGCATGTTAAGCATGCTA
1 TGATTCGCATGTTAAGCATGCTA
75630789 CTGTGTTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (35 bp):
TGATTCGCATGTTAAGCATGCTATTATTATGATTA
Found at i:75633988 original size:25 final size:25
Alignment explanation
Indices: 75633960--75634042 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
75633950 ATTTTCTGGG
* * *
75633960 AAGCCTATGTGGTGACTTCTCTAGA
1 AAGCCTTTGTGGTGAATACTCTAGA
* *
75633985 AAGCCTTTGTAGTGAATCCTCTAGA
1 AAGCCTTTGTGGTGAATACTCTAGA
* **
75634010 AATCCTTTGTGGCAAATACTCTAGA
1 AAGCCTTTGTGGTGAATACTCTAGA
75634035 AAGCCTTT
1 AAGCCTTT
75634043 ATGACGAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (25 bp):
AAGCCTTTGTGGTGAATACTCTAGA
Found at i:75635831 original size:28 final size:28
Alignment explanation
Indices: 75635800--75635942 Score: 141
Period size: 28 Copynumber: 5.1 Consensus size: 28
75635790 AAGCATGGAG
* *
75635800 ATAATGTGATTTGGG-CTGGATGGGTCAT
1 ATAATGTGAATTGGGCCT-GATGGGCCAT
* * *
75635828 ATAAATG-AAATTGGGCCTGACGGGACAT
1 AT-AATGTGAATTGGGCCTGATGGGCCAT
75635856 ATGAATGTGAATTGGGCCTGATGGGCCAT
1 AT-AATGTGAATTGGGCCTGATGGGCCAT
* *
75635885 ATAACGTGAATTGGGCCAGATGGGCCAT
1 ATAATGTGAATTGGGCCTGATGGGCCAT
*
75635913 ATAA-ATGAGATTGGGCCT-AGTGGGCCAT
1 ATAATGTGA-ATTGGGCCTGA-TGGGCCAT
75635941 AT
1 AT
75635943 GCATGTATGT
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
27 4 0.04
28 68 0.69
29 26 0.27
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (28 bp):
ATAATGTGAATTGGGCCTGATGGGCCAT
Found at i:75635872 original size:57 final size:56
Alignment explanation
Indices: 75635802--75635942 Score: 144
Period size: 57 Copynumber: 2.5 Consensus size: 56
75635792 GCATGGAGAT
* * * *
75635802 AATGTGATTTGGGCTGGATGGGTCATATAA-ATGAAATTGGGCCTGACGGGACATATG
1 AATGTGAATTGGGCT-GATGGGCCATATAACATG-AATTGGGCCAGACGGGACATATA
* * *
75635859 AATGTGAATTGGGCCTGATGGGCCATATAACGTGAATTGGGCCAGATGGGCCATATA
1 AATGTGAATTGGG-CTGATGGGCCATATAACATGAATTGGGCCAGACGGGACATATA
*
75635916 AATGAG-ATTGGGCCT-AGTGGGCCATAT
1 AATGTGAATTGGG-CTGA-TGGGCCATAT
75635943 GCATGTATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
55 1 0.01
56 19 0.26
57 49 0.67
58 4 0.05
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (56 bp):
AATGTGAATTGGGCTGATGGGCCATATAACATGAATTGGGCCAGACGGGACATATA
Found at i:75637052 original size:17 final size:17
Alignment explanation
Indices: 75637015--75637052 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
75637005 TCATATCTTG
75637015 AAAAAAGGTTTTCAATA
1 AAAAAAGGTTTTCAATA
75637032 AAAACAAGGTTTTCAATA
1 AAAA-AAGGTTTTCAATA
75637050 AAA
1 AAA
75637053 TACTTCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (17 bp):
AAAAAAGGTTTTCAATA
Found at i:75645050 original size:12 final size:12
Alignment explanation
Indices: 75645035--75645060 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75645025 ATCATCCTCT
75645035 TCATCAGATTCA
1 TCATCAGATTCA
75645047 TCATCAGATTCA
1 TCATCAGATTCA
75645059 TC
1 TC
75645061 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:75646666 original size:15 final size:16
Alignment explanation
Indices: 75646638--75646695 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
75646628 CAAAATTTTT
75646638 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
75646654 TATTTATAA-AAAT--
1 TATTTATAATAAATAA
75646667 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
75646683 TATTTA-AATAAAT
1 TATTTATAATAAAT
75646696 TAATCCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.08
13 5 0.14
14 4 0.11
15 9 0.25
16 12 0.33
17 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTATAATAAATAA
Found at i:75646679 original size:29 final size:29
Alignment explanation
Indices: 75646637--75646697 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
75646627 GCAAAATTTT
75646637 TTATTTTAATTAAATAATATTTATAA-AAA
1 TTATTTTAATTAAATAATATTTA-AATAAA
75646666 TTATTTTAATTAAATAATATTTAAATAAA
1 TTATTTTAATTAAATAATATTTAAATAAA
75646695 TTA
1 TTA
75646698 ATCCAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TTATTTTAATTAAATAATATTTAAATAAA
Found at i:75646686 original size:16 final size:16
Alignment explanation
Indices: 75646638--75646687 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
75646628 CAAAATTTTT
75646638 TATTTTAATTAAATAA
1 TATTTTAATTAAATAA
75646654 TA-TTT-A-TAAA-AA
1 TATTTTAATTAAATAA
75646666 TTATTTTAATTAAATAA
1 -TATTTTAATTAAATAA
75646683 TATTT
1 TATTT
75646688 AAATAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 4 0.14
15 4 0.14
16 11 0.38
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTTTAATTAAATAA
Found at i:75646714 original size:39 final size:39
Alignment explanation
Indices: 75646663--75646753 Score: 157
Period size: 39 Copynumber: 2.4 Consensus size: 39
75646653 ATATTTATAA
*
75646663 AAATTATTTTAATTAAATAATATTTAAATAAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
*
75646702 AAATTATATTAATTAATTAATATTTAAATAAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
75646741 AAATTATA-TAATT
1 AAATTATATTAATT
75646754 TAAAAAATTG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 5 0.10
39 45 0.90
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (39 bp):
AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
Found at i:75646717 original size:19 final size:19
Alignment explanation
Indices: 75646693--75646753 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
75646683 TATTTAAATA
75646693 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* * *
75646712 AATTAAT-TAATATTTAAATA
1 AATTAATCCAA-A-TTATATT
75646732 AATTAATCCAAATTATA-T
1 AATTAATCCAAATTATATT
75646750 AATT
1 AATT
75646754 TAAAAAATTG
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.18
19 12 0.36
20 13 0.39
21 2 0.06
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.43
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:75646738 original size:20 final size:20
Alignment explanation
Indices: 75646673--75646738 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
75646663 AAATTATTTT
*
75646673 AATTAAATAATATTTAAATA
1 AATTAATTAATATTTAAATA
* * *
75646693 AATTAATCCAA-A-TTATATT
1 AATTAAT-TAATATTTAAATA
75646712 AATTAATTAATATTTAAATA
1 AATTAATTAATATTTAAATA
75646732 AATTAAT
1 AATTAAT
75646739 CCAAATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 2 0.06
19 13 0.36
20 19 0.53
21 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTAATTAATATTTAAATA
Found at i:75646756 original size:19 final size:19
Alignment explanation
Indices: 75646690--75646756 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
75646680 TAATATTTAA
75646690 ATAAATTAATCCAAATTAT
1 ATAAATTAATCCAAATTAT
* * *
75646709 ATTAATTAAT-TAATATTTAA
1 ATAAATTAATCCAA-A-TTAT
75646729 ATAAATTAATCCAAATTAT
1 ATAAATTAATCCAAATTAT
*
75646748 ATAATTTAA
1 ATAAATTAA
75646757 AAAATTGTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 2 0.05
19 21 0.55
20 13 0.34
21 2 0.05
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAAATTAATCCAAATTAT
Found at i:75646899 original size:29 final size:29
Alignment explanation
Indices: 75646865--75646932 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 29
75646855 AATCACATGG
75646865 TAAAAATTTATTTTAATTAAATAATATTTA
1 TAAAAA-TTATTTTAATTAAATAATATTTA
75646895 TAAAAATTATTTTAATTAAATAATATTTA
1 TAAAAATTATTTTAATTAAATAATATTTA
75646924 -AATAAATTA
1 TAA-AAATTA
75646933 ATAAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 2 0.05
29 29 0.78
30 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
TAAAAATTATTTTAATTAAATAATATTTA
Found at i:75646921 original size:16 final size:15
Alignment explanation
Indices: 75646876--75646935 Score: 63
Period size: 15 Copynumber: 4.0 Consensus size: 15
75646866 AAAAATTTAT
75646876 TTTAATTAAATAATA
1 TTTAATTAAATAATA
75646891 TTT-A-TAAA-AATTA
1 TTTAATTAAATAA-TA
75646904 TTTTAATTAAATAATA
1 -TTTAATTAAATAATA
*
75646920 TTTAAATAAATTAATA
1 TTTAATTAAA-TAATA
75646936 AAAATTATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.05
13 6 0.16
14 4 0.11
15 13 0.34
16 11 0.29
17 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTAATTAAATAATA
Found at i:75646940 original size:39 final size:39
Alignment explanation
Indices: 75646881--75646988 Score: 155
Period size: 39 Copynumber: 2.8 Consensus size: 39
75646871 TTTATTTTAA
* *
75646881 TTAAATAATATTTATAAAAATTATTTTAATTAAATAATAT
1 TTAAATAA-ATTAATAAAAATTATATTAATTAAATAATAT
*
75646921 TTAAATAAATTAATAAAAATTATATTAATTATATAATAT
1 TTAAATAAATTAATAAAAATTATATTAATTAAATAATAT
**
75646960 TTAAATAAATTAATCTAAATTATA-TAATT
1 TTAAATAAATTAATAAAAATTATATTAATT
75646989 TAAAAAAATT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 5 0.08
39 50 0.79
40 8 0.13
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (39 bp):
TTAAATAAATTAATAAAAATTATATTAATTAAATAATAT
Found at i:75646950 original size:19 final size:19
Alignment explanation
Indices: 75646894--75646998 Score: 70
Period size: 20 Copynumber: 5.5 Consensus size: 19
75646884 AATAATATTT
*
75646894 ATAAAAATTATTTTAATTAA
1 ATAAAAATTATATTAATT-A
* * * *
75646914 ATAATATTTAAATAAATTA
1 ATAAAAATTATATTAATTA
75646933 ATAAAAATTATATTAATTA
1 ATAAAAATTATATTAATTA
* * * *
75646952 TATAATATTTAAATAAATTA
1 -ATAAAAATTATATTAATTA
**
75646972 ATCTAAATTATA-TAATTTA
1 ATAAAAATTATATTAA-TTA
75646991 A-AAAAATT
1 ATAAAAATT
75646999 GTGTATAAAA
Statistics
Matches: 62, Mismatches: 21, Indels: 6
0.70 0.24 0.07
Matches are distributed among these distances:
18 7 0.11
19 27 0.44
20 28 0.45
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (19 bp):
ATAAAAATTATATTAATTA
Found at i:75646970 original size:20 final size:19
Alignment explanation
Indices: 75646908--75646973 Score: 78
Period size: 20 Copynumber: 3.4 Consensus size: 19
75646898 AAATTATTTT
75646908 AATTAAATAATATTTAAATA
1 AATT-AATAATATTTAAATA
* * * *
75646928 AATTAATAAAAATTATATT
1 AATTAATAATATTTAAATA
75646947 AATTATATAATATTTAAATA
1 AATTA-ATAATATTTAAATA
75646967 AATTAAT
1 AATTAAT
75646974 CTAAATTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
19 18 0.49
20 19 0.51
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTAATAATATTTAAATA
Found at i:75647135 original size:15 final size:16
Alignment explanation
Indices: 75647107--75647164 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
75647097 GAAAAATTTT
75647107 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
75647123 TATTTATAA-AAAT--
1 TATTTATAATAAATAA
75647136 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
75647152 TATTTA-AATAAAT
1 TATTTATAATAAAT
75647165 TAATCCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.08
13 5 0.14
14 4 0.11
15 9 0.25
16 12 0.33
17 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTATAATAAATAA
Found at i:75647143 original size:29 final size:29
Alignment explanation
Indices: 75647106--75647166 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
75647096 GGAAAAATTT
75647106 TTATTTTAATTAAATAATATTTATAA-AAA
1 TTATTTTAATTAAATAATATTTA-AATAAA
75647135 TTATTTTAATTAAATAATATTTAAATAAA
1 TTATTTTAATTAAATAATATTTAAATAAA
75647164 TTA
1 TTA
75647167 ATCCAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TTATTTTAATTAAATAATATTTAAATAAA
Found at i:75647155 original size:16 final size:16
Alignment explanation
Indices: 75647107--75647156 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
75647097 GAAAAATTTT
75647107 TATTTTAATTAAATAA
1 TATTTTAATTAAATAA
75647123 TA-TTT-A-TAAA-AA
1 TATTTTAATTAAATAA
75647135 TTATTTTAATTAAATAA
1 -TATTTTAATTAAATAA
75647152 TATTT
1 TATTT
75647157 AAATAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 4 0.14
15 4 0.14
16 11 0.38
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTTTAATTAAATAA
Done.