Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 230 of 310
Found at i:75647177 original size:234 final size:237
Alignment explanation
Indices: 75646629--75647183 Score: 946
Period size: 235 Copynumber: 2.4 Consensus size: 237
75646619 TTTGAAATGC
*
75646629 AAAATTTTTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
1 AAAAATTTTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
75646694 ATTAATCCAAATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAA
66 ATTAATCCAAATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAA
*
75646759 AATTGTGTATAAAAAAGTCTAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTAGGAGAAAGA
131 AATTGTGTATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTAGGAGAAAGA
* * *
75646824 AATAATTAAAATAAAATTTGACGATGTGGAAAATCACATGGT
196 AATAATAAAAATAAAATTTGACAATGTGCAAAATCACATGGT
75646866 AAAAA--TTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
1 AAAAATTTTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
** *
75646929 ATTAATAAAAATTATATTAATT-ATATAATATTTAAATAAATTAATCTAAATTATATAATTTAAA
66 ATTAATCCAAATTATATTAATTAAT-TAATATTTAAATAAATTAATCCAAATTATATAATTT-AA
* *
75646993 AAAATTGTGTATAAAAAAGTCGAAAACCGTATGAGATGAAATGTCAACTTTGTTCCT-TG-GAAA
129 AAAATTGTGTATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTAGGAGAAA
75647056 -AAATAATAAAAATAAAATTTGACAATGTGCAAAATCACATGG-
194 GAAATAATAAAAATAAAATTTGACAATGTGCAAAATCACATGGT
75647098 AAAAATTTTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
1 AAAAATTTTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
75647163 ATTAATCCAAATTATA-TAATT
66 ATTAATCCAAATTATATTAATT
75647184 TAAAATAAGA
Statistics
Matches: 302, Mismatches: 12, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
232 5 0.02
233 44 0.15
234 78 0.26
235 114 0.38
236 57 0.19
237 4 0.01
ACGTcount: A:0.50, C:0.05, G:0.06, T:0.39
Consensus pattern (237 bp):
AAAAATTTTTATTTTAATTAAATAATATTTATAAAAATTATTTTAATTAAATAATATTTAAATAA
ATTAATCCAAATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAA
AATTGTGTATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTAGGAGAAAGA
AATAATAAAAATAAAATTTGACAATGTGCAAAATCACATGGT
Found at i:75647432 original size:24 final size:24
Alignment explanation
Indices: 75647400--75647446 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
75647390 TTAACTTAAA
*
75647400 TGATAAAAC-GAACGATAATATTTG
1 TGATAAAACAG-ACGAGAATATTTG
75647424 TGATAAAACAGACGAGAATATTT
1 TGATAAAACAGACGAGAATATTT
75647447 CAATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.28
Consensus pattern (24 bp):
TGATAAAACAGACGAGAATATTTG
Found at i:75648701 original size:42 final size:42
Alignment explanation
Indices: 75648642--75648722 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
75648632 TTTAGCTTGC
75648642 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGTATA
1 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGTATA
75648684 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGT
1 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGT
75648723 GTGTTTTGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (42 bp):
TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGTATA
Found at i:75649529 original size:16 final size:16
Alignment explanation
Indices: 75649508--75649541 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
75649498 AATTTAATCG
75649508 AACAAGATGATAGACT
1 AACAAGATGATAGACT
75649524 AACAAGATGATAGACT
1 AACAAGATGATAGACT
75649540 AA
1 AA
75649542 TTTTGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (16 bp):
AACAAGATGATAGACT
Found at i:75650069 original size:73 final size:71
Alignment explanation
Indices: 75649987--75650125 Score: 181
Period size: 73 Copynumber: 1.9 Consensus size: 71
75649977 GGAAAATAAT
75649987 TTGGGGAAGACACACTTAGAGAAAATAAGAGAAAAGAAATTGGGCAAATGGGGGGAATGAAATC-
1 TTGGGGAAGACACACTTAGAGAAAATAAGAG--AAGAAATTGGG-AAATGGGGGGAATGAAATCA
75650051 GGGTTTAAG
63 GGGTTTAAG
* * * ** * *
75650060 TTGGGGAAGACGCAGTTAGGGAAAATCTGAGAAGAAATTGGGAAATTGGGGGTATGAAATCAGGG
1 TTGGGGAAGACACACTTAGAGAAAATAAGAGAAGAAATTGGGAAATGGGGGGAATGAAATCAGGG
75650125 T
66 T
75650126 AATCTGATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
70 17 0.29
71 15 0.26
73 26 0.45
ACGTcount: A:0.39, C:0.06, G:0.35, T:0.19
Consensus pattern (71 bp):
TTGGGGAAGACACACTTAGAGAAAATAAGAGAAGAAATTGGGAAATGGGGGGAATGAAATCAGGG
TTTAAG
Found at i:75650607 original size:73 final size:74
Alignment explanation
Indices: 75650485--75650660 Score: 250
Period size: 73 Copynumber: 2.4 Consensus size: 74
75650475 AAGGCTTCTT
75650485 TTTGCGGCGTTTTC-TAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACA-TGC
1 TTTGCGGCGTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACACT-C
75650548 TTAAAACATA
65 TTAAAACATA
* * * * *
75650558 TTTGCGGCGTTTTCTTAAAAATGCCACTAATAGTTAGA-AAAAACGACAGCGTTTTGCACACTTT
1 TTTGCGGCGTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACACTCT
75650622 TAAAACATA
66 TAAAACATA
* * *
75650631 TTTGCGGCTTTTTTTTTAAAACGCCACTAA
1 TTTGCGGCGTTTTCTTAAAAACGCCACTAA
75650661 AGGCTATCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
73 70 0.76
74 22 0.24
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (74 bp):
TTTGCGGCGTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACACTCT
TAAAACATA
Found at i:75651017 original size:21 final size:21
Alignment explanation
Indices: 75650999--75651058 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 21
75650989 AAAATTTATT
75650999 TTTAAGATTTTAGGGTTTATAG
1 TTTAAGA-TTTAGGGTTTATAG
75651021 TTTAAGATTTAGGGTTTA-AGG
1 TTTAAGATTTAGGGTTTATA-G
75651042 TTTATAG-TTTAGGGTTT
1 TTTA-AGATTTAGGGTTT
75651059 GGGATTTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.03
21 26 0.72
22 9 0.25
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (21 bp):
TTTAAGATTTAGGGTTTATAG
Found at i:75651024 original size:14 final size:14
Alignment explanation
Indices: 75651007--75651058 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
75650997 TTTTTAAGAT
*
75651007 TTTAGGGTTTATAG
1 TTTAAGGTTTATAG
* **
75651021 TTTAAGATTTAGGG
1 TTTAAGGTTTATAG
75651035 TTTAAGGTTTATAG
1 TTTAAGGTTTATAG
*
75651049 TTTAGGGTTT
1 TTTAAGGTTT
75651059 GGGATTTAGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (14 bp):
TTTAAGGTTTATAG
Found at i:75651201 original size:16 final size:16
Alignment explanation
Indices: 75651176--75651219 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
75651166 GAGATTTCGG
*
75651176 TTTAAAGGTTTAGTGA
1 TTTAAGGGTTTAGTGA
*
75651192 TTTAAGGGTTTAGTGG
1 TTTAAGGGTTTAGTGA
*
75651208 GTT-AGGGTTTAG
1 TTTAAGGGTTTAG
75651220 AGAAAGCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 9 0.36
16 16 0.64
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (16 bp):
TTTAAGGGTTTAGTGA
Found at i:75651698 original size:15 final size:16
Alignment explanation
Indices: 75651672--75651704 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
75651662 TAAACCCCAA
75651672 CCCTTAAACCCATAAT
1 CCCTTAAACCCATAAT
75651688 CCCTT-AACCCATAAT
1 CCCTTAAACCCATAAT
75651703 CC
1 CC
75651705 ATAAACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.24
Consensus pattern (16 bp):
CCCTTAAACCCATAAT
Found at i:75651711 original size:15 final size:15
Alignment explanation
Indices: 75651676--75651711 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
75651666 CCCCAACCCT
*
75651676 TAAACCCATAATCCC
1 TAAACCCATAATCCA
*
75651691 TTAACCCATAATCCA
1 TAAACCCATAATCCA
75651706 TAAACC
1 TAAACC
75651712 TTAAAATAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:75656437 original size:34 final size:34
Alignment explanation
Indices: 75656394--75656461 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
75656384 CTATAAAATA
*
75656394 GGGAAAGAAC-ACACAAAGTAAGCTTCAAAAGCTT
1 GGGAAAGAACTAC-CAAAGAAAGCTTCAAAAGCTT
* *
75656428 GGGAAAGAACTTCCAAAGAAAGCTTTAAAAGCTT
1 GGGAAAGAACTACCAAAGAAAGCTTCAAAAGCTT
75656462 AGTAAGCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.18
Consensus pattern (34 bp):
GGGAAAGAACTACCAAAGAAAGCTTCAAAAGCTT
Found at i:75656841 original size:42 final size:43
Alignment explanation
Indices: 75656749--75656900 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 43
75656739 CAATACTGTA
* * * * * *
75656749 TCCCAGATATGGTCTTACATGTTATC-ACATATCGATGCAACTG
1 TCCCAGACATGGTCTTACACGTAATCAAAATA-CAATGCAAATG
* *
75656792 TCCCAGACAGGGTCTTACACG-AATCATAATACAATGTC-AATG
1 TCCCAGACATGGTCTTACACGTAATCAAAATACAATG-CAAATG
75656834 TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCAAATG
1 TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCAAATG
*
75656877 -CCTCAGACATGGTCTTACATGTAA
1 TCC-CAGACATGGTCTTACACGTAA
75656901 ACACTTCTCG
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
42 33 0.35
43 60 0.65
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCAAATG
Found at i:75659538 original size:16 final size:16
Alignment explanation
Indices: 75659519--75659549 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75659509 CTTCTTCACT
75659519 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
75659535 TACTTACTTACTTAA
1 TACTCACTTACTTAA
75659550 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:75659555 original size:20 final size:20
Alignment explanation
Indices: 75659516--75659555 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75659506 AAACTTCTTC
* *
75659516 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
75659536 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
75659556 TTATTATTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:75659923 original size:55 final size:53
Alignment explanation
Indices: 75659741--75659992 Score: 230
Period size: 55 Copynumber: 4.8 Consensus size: 53
75659731 ACACGGGTAC
* * * *
75659741 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* * * * *
75659790 CTTACCATTGCCATGTCTCGACATGGTTTTATATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * * *
75659843 CTCACCAATGTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * *
75659898 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGG-TACCTTGCCTTATAGAA
*
75659951 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTACC
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTACC
75659993 CTTAAACCCT
Statistics
Matches: 165, Mismatches: 26, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
49 33 0.20
52 2 0.01
53 43 0.26
54 16 0.10
55 69 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:75659945 original size:108 final size:110
Alignment explanation
Indices: 75659788--75659988 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
75659778 ATCCTTTTGA
* * *
75659788 AACTTACCATTGCCATGTCTCGACATGGTTTTATATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
75659851 -TGTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
75659896 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
75659961 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
75659989 TACCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:75662931 original size:22 final size:22
Alignment explanation
Indices: 75662881--75662932 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
75662871 CGCCCATGTT
**
75662881 GCCTGGCCGTGTGGATCACGTA
1 GCCTGGCCGTGTGGATCACACA
* *
75662903 GCTTGGCCGTGTGGATCACACG
1 GCCTGGCCGTGTGGATCACACA
75662925 GCCTGGCC
1 GCCTGGCC
75662933 CAAAATCCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.12, C:0.31, G:0.37, T:0.21
Consensus pattern (22 bp):
GCCTGGCCGTGTGGATCACACA
Found at i:75667905 original size:16 final size:16
Alignment explanation
Indices: 75667886--75667916 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75667876 CTTCTTCACT
75667886 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
75667902 TACTTACTTACTTAA
1 TACTCACTTACTTAA
75667917 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:75667922 original size:20 final size:20
Alignment explanation
Indices: 75667883--75667922 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75667873 AAACTTCTTC
* *
75667883 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
75667903 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
75667923 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:75668292 original size:55 final size:52
Alignment explanation
Indices: 75668116--75668362 Score: 181
Period size: 55 Copynumber: 4.7 Consensus size: 52
75668106 ACCTTACCAT
* * *
75668116 TGCCATGAC-TTGTCATGGTCTTGCATGGTATCC-T---TT-TGAAACTTACCAT
1 TGCCATGTCTTTG-CATGGTCTTACATGGTATCCTTGCCTTATG-AACTTA-CAA
* *
75668165 TGCCATGTC-TTGACATGGTCTTCCATGGTATCCTTGCCTTATGAACTCACGAA
1 TGCCATGTCTTTG-CATGGTCTTACATGGTATCCTTGCCTTATGAACTTAC-AA
* *
75668218 TGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTTGCATGGTCTTACAT-GGTATCC-TTGCCTTAT-G-AACTTA-CAA
*
75668273 TGCCATGTCTTTGCATGGTCTTACATGGTTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTTGCATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTTA-CAA
* * * * *
75668327 TTTCCATGCCTTGGCATGGACTTACAGGGTATCCTT
1 -TGCCATGTCTTTGCATGGTCTTACATGGTATCCTT
75668363 AAACCCTAAT
Statistics
Matches: 162, Mismatches: 20, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
49 30 0.19
50 1 0.01
52 3 0.02
53 41 0.25
54 16 0.10
55 68 0.42
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (52 bp):
TGCCATGTCTTTGCATGGTCTTACATGGTATCCTTGCCTTATGAACTTACAA
Found at i:75668300 original size:108 final size:110
Alignment explanation
Indices: 75668155--75668352 Score: 278
Period size: 108 Copynumber: 1.8 Consensus size: 110
75668145 ATCCTTTTGA
* * *
75668155 AACTTACCATTGCCATGTCTTGACATGGTCTTCCATGGTATCCTTGCCTTATG-AA-CTCACGAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
75668218 -TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGACTTACATAGGACCTTTGCCTTATAGT
* * *
75668263 AACTTATCAATGCCATGTCTTTG-CATGGTCTTACATGGTTTCCTTGCCTTAGAAACCTTACCAA
1 AACTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAA
*
75668327 TTTCCATGCCTTGGCATGGACTTACA
65 TTGCCATGCCTTGGCATGGACTTACA
75668353 GGGTATCCTT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
107 1 0.01
108 45 0.58
109 9 0.12
110 23 0.29
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGACTTACATAGGACCTTTGCCTTATAGT
Found at i:75668732 original size:29 final size:30
Alignment explanation
Indices: 75668700--75668757 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
75668690 TCCTTGACTC
75668700 AAACTTTT-CAAAATTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACACTTTTGCCCCT
** *
75668729 AAACTTTTACTTATTTACACTTTTGCCCC
1 AAACTTTTACAAAATTACACTTTTGCCCC
75668758 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAAATTACACTTTTGCCCCT
Found at i:75672113 original size:12 final size:13
Alignment explanation
Indices: 75672085--75672117 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75672075 TTATTTCTTT
75672085 TTCTCCATCTACC
1 TTCTCCATCTACC
*
75672098 TTCTCC-TCTTCC
1 TTCTCCATCTACC
75672110 TTCTCCAT
1 TTCTCCAT
75672118 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:75673217 original size:28 final size:28
Alignment explanation
Indices: 75673185--75673249 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
75673175 ATTTACTAGA
*
75673185 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
75673213 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
75673241 ATACCCCTA
1 ATACCCCTA
75673250 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:75673456 original size:29 final size:28
Alignment explanation
Indices: 75673355--75673445 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
75673345 AGGAAGCGTC
75673355 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
75673383 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
75673411 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
75673440 CTGGTG
1 CTGGTG
75673446 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:75673938 original size:18 final size:18
Alignment explanation
Indices: 75673899--75673939 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
75673889 TAATAAGGCC
* *
75673899 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
75673917 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
75673935 TTTTA
1 TTTTA
75673940 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:75692726 original size:28 final size:28
Alignment explanation
Indices: 75692694--75692758 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
75692684 ATTTACTAGA
**
75692694 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAACGACCATT
*
75692722 ATACCCCTATGTATGCAAAACGACCTTT
1 ATACCCCTATGTATGCAAAACGACCATT
75692750 ATACCCCTA
1 ATACCCCTA
75692759 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAACGACCATT
Found at i:75692965 original size:29 final size:28
Alignment explanation
Indices: 75692865--75692954 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 28
75692855 GGAAGCGTCT
75692865 TGGTGGCTA-TGCCACAAATTATCTGTTC
1 TGGTGGC-ACTGCCACAAATTATCTGTTC
* *
75692893 TCGTGGCCCTGCCACAAATTATCTGTTC
1 TGGTGGCACTGCCACAAATTATCTGTTC
*
75692921 TGGTGGCACTGCCACAAAATATCTGTATC
1 TGGTGGCACTGCCACAAATTATCTGT-TC
75692950 TGGTG
1 TGGTG
75692955 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
28 48 0.87
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
TGGTGGCACTGCCACAAATTATCTGTTC
Found at i:75693447 original size:18 final size:18
Alignment explanation
Indices: 75693408--75693448 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
75693398 TAATACGGCC
* **
75693408 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATAA
75693426 TTTTAATTACTTTTATAA
1 TTTTAATTACTTTTATAA
75693444 TTTTA
1 TTTTA
75693449 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTAATTACTTTTATAA
Found at i:75695838 original size:27 final size:27
Alignment explanation
Indices: 75695807--75695984 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75695797 TAAATTGTAC
75695807 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75695834 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75695860 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75695888 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75695916 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75695943 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75695970 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75695985 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75695921 original size:82 final size:81
Alignment explanation
Indices: 75695808--75695963 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75695798 AAATTGTACA
* *
75695808 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75695872 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75695889 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75695954 TGCGAGTTGA
65 TGCGAATTGA
75695964 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75695975 original size:82 final size:81
Alignment explanation
Indices: 75695804--75695984 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75695794 GATTAAATTG
* *
75695804 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75695869 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75695885 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75695949 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75695967 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75695985 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75695995 original size:27 final size:27
Alignment explanation
Indices: 75695889--75695995 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
75695879 TGACCATGCG
* * * *
75695889 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
75695917 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
75695944 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
75695971 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
75695996 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:75696275 original size:103 final size:104
Alignment explanation
Indices: 75696079--75696285 Score: 380
Period size: 103 Copynumber: 2.0 Consensus size: 104
75696069 TCTTGAGTAC
*
75696079 ATGGCTAATAGGTGCTATGCTTATACTTGGTGTTGAGCTCGGTAAGTTTGAACCTATGTGACAAA
1 ATGGCTAATAGGTGCTATGCTTATACTTGGTGTTGAGCTCGGTAAGTATGAACCTATGTGACAAA
75696144 TATACTTGAAGTCACGTACATAAAATTTATCGTAGGATG
66 TATACTTGAAGTCACGTACATAAAATTTATCGTAGGATG
* *
75696183 ATGGCTAATATGTGCTATGCTTATACTTGGTGTTGAGCTCGGTAAG-ATGAACCTATGTGACAAC
1 ATGGCTAATAGGTGCTATGCTTATACTTGGTGTTGAGCTCGGTAAGTATGAACCTATGTGACAAA
75696247 TATACTTGAAGTCACGTACATAAAATTTATCGTAGGATG
66 TATACTTGAAGTCACGTACATAAAATTTATCGTAGGATG
75696286 GGTGAAAGGC
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
103 55 0.55
104 45 0.45
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (104 bp):
ATGGCTAATAGGTGCTATGCTTATACTTGGTGTTGAGCTCGGTAAGTATGAACCTATGTGACAAA
TATACTTGAAGTCACGTACATAAAATTTATCGTAGGATG
Found at i:75711846 original size:20 final size:20
Alignment explanation
Indices: 75711807--75711846 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75711797 AAACTTCTTC
* *
75711807 ACTTACTCACTTATTTAAAT
1 ACTTACTCACTTAATCAAAT
*
75711827 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
75711847 TTATTAATGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:75712223 original size:55 final size:53
Alignment explanation
Indices: 75712080--75712287 Score: 224
Period size: 55 Copynumber: 3.8 Consensus size: 53
75712070 ATCCTTTTGA
* * *
75712080 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
75712133 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G
* * *
75712187 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTCCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
75712240 AAACCTTACCAATTTCCATG-CTTTGGCATGGTCTTACATGGTATCCTT
1 -AA-CTTACCAA-TGCCATGTC-TTGACATGGTCTTACATGGGATCCTT
75712288 AAACCCTAAT
Statistics
Matches: 132, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 9 0.07
55 73 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:75712226 original size:108 final size:110
Alignment explanation
Indices: 75712080--75712280 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
75712070 ATCCTTTTGA
* *
75712080 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTCCCTTA-GAAACCTCACCAA
75712143 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
75712188 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTCCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTCCCTTAGAAACCTCACCAAT
* *
75712253 TTCCATGCTTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
75712281 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 7 0.08
110 26 0.31
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTCCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:75722922 original size:11 final size:11
Alignment explanation
Indices: 75722906--75722930 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75722896 GCGATTATTG
75722906 TATTTATTGTA
1 TATTTATTGTA
75722917 TATTTATTGTA
1 TATTTATTGTA
75722928 TAT
1 TAT
75722931 AAATATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:75723448 original size:22 final size:20
Alignment explanation
Indices: 75723423--75723462 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
75723413 GATAGTGTTC
75723423 AATTAGAAGGATTTTAGAAGAG
1 AATTA-AAGGATTTT-GAAGAG
*
75723445 AATTAAGGGATTTTGAAG
1 AATTAAAGGATTTTGAAG
75723463 TGTGGGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (20 bp):
AATTAAAGGATTTTGAAGAG
Found at i:75725790 original size:40 final size:38
Alignment explanation
Indices: 75725704--75725813 Score: 105
Period size: 40 Copynumber: 2.8 Consensus size: 38
75725694 AAATTGAGAC
* * * *
75725704 TGATACTGAACTGAATTATGGAA-TACTAAATATTGTTT
1 TGATACTGAATTGAATTGT-GAATTACTGAATATTGTTA
75725742 TGAGTACTGAATTGAATTGTGAAGTTACTGAATATTGTTA
1 TGA-TACTGAATTGAATTGTGAA-TTACTGAATATTGTTA
* **
75725782 TGTATACTGCATTGAACGGTGAAATTACTGAA
1 TG-ATACTGAATTGAATTGTG-AATTACTGAA
75725814 GTAATGAATT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
38 6 0.10
39 14 0.23
40 37 0.62
41 3 0.05
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (38 bp):
TGATACTGAATTGAATTGTGAATTACTGAATATTGTTA
Found at i:75727510 original size:27 final size:27
Alignment explanation
Indices: 75727346--75727501 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
75727336 CCTTAATCGA
* *
75727346 TAAAATGACTATTTTGCCTTTATG-GG
1 TAAAATGACTGTTTTGCCCTTATGAGG
75727372 ATAAAATGACTGTTTTGCCCTTATGAGG
1 -TAAAATGACTGTTTTGCCCTTATGAGG
*
75727400 TAAAATAACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
75727427 TAAAATGACTCTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
75727454 TAAAATAATTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
75727481 TAAAATGACTATTTTTCCCTT
1 TAAAATGACTGTTTTGCCCTT
75727502 TTATGGTAAG
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 113 0.98
28 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:75727510 original size:54 final size:54
Alignment explanation
Indices: 75727357--75727533 Score: 223
Period size: 54 Copynumber: 3.3 Consensus size: 54
75727347 AAAATGACTA
* * *
75727357 TTTTGCCTTTATG-GGATAAAATGACTGTTTTGCCCTTATGAGGTAAAATAACTG
1 TTTTGCCCTTATGTGG-TAAAATGACTATTTTGCCCTTATGAGGTAAAATAATTG
* *
75727411 TTTTGCCCTTATGAGGTAAAATGACTCTTTTGCCCTTATGAGGTAAAATAATTG
1 TTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATAATTG
* * * *
75727465 TTTTGCCCTTATGTGGTAAAATGACTATTTTTCCCTT-TTATGGTAAGATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGA-GGTAAAATAATTG
* *
75727519 TTTTACCCCTATGTG
1 TTTTGCCCTTATGTG
75727534 ATGTATGTTT
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.02
54 106 0.96
55 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (54 bp):
TTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATAATTG
Found at i:75727522 original size:27 final size:27
Alignment explanation
Indices: 75727346--75727522 Score: 148
Period size: 27 Copynumber: 6.6 Consensus size: 27
75727336 CCTTAATCGA
* *
75727346 TAAAATGACTATTTTG-CCTT-TATGGG
1 TAAAATGATTGTTTTGCCCTTATAT-GG
*
75727372 ATAAAATGACTGTTTTGCCCTTATGA-GG
1 -TAAAATGATTGTTTTGCCCTTAT-ATGG
* *
75727400 TAAAATAACTGTTTTGCCCTTATGA-GG
1 TAAAATGATTGTTTTGCCCTTAT-ATGG
* *
75727427 TAAAATGACTCTTTTGCCCTTATGA-GG
1 TAAAATGATTGTTTTGCCCTTAT-ATGG
* *
75727454 TAAAATAATTGTTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATATGG
* * * *
75727481 TAAAATGACTATTTTTCCCTTTTATGG
1 TAAAATGATTGTTTTGCCCTTATATGG
*
75727508 TAAGATGATTGTTTT
1 TAAAATGATTGTTTT
75727523 ACCCCTATGT
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
27 121 0.94
28 6 0.05
29 1 0.01
30 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATATGG
Found at i:75727871 original size:18 final size:18
Alignment explanation
Indices: 75727848--75727928 Score: 110
Period size: 18 Copynumber: 4.6 Consensus size: 18
75727838 TTGCATACTA
*
75727848 TTTACTGCTACTGCACTG
1 TTTACTGTTACTGCACTG
*
75727866 TTTACTGTTACTGCACTA
1 TTTACTGTTACTGCACTG
*
75727884 TTTACTGTTACTGCATTG
1 TTTACTGTTACTGCACTG
* *
75727902 -TTACTTTTACTGCATTG
1 TTTACTGTTACTGCACTG
75727919 TTTACTGTTA
1 TTTACTGTTA
75727929 TTTCAATAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
17 16 0.29
18 40 0.71
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.48
Consensus pattern (18 bp):
TTTACTGTTACTGCACTG
Found at i:75727913 original size:35 final size:36
Alignment explanation
Indices: 75727844--75727928 Score: 118
Period size: 35 Copynumber: 2.4 Consensus size: 36
75727834 GGACTTGCAT
*
75727844 ACTATTTACTGCTACTGCACTGTTTACTGTTACTGC
1 ACTATTTACTGTTACTGCACTGTTTACTGTTACTGC
* *
75727880 ACTATTTACTGTTACTGCATTG-TTACTTTTACTGC
1 ACTATTTACTGTTACTGCACTGTTTACTGTTACTGC
* *
75727915 ATTGTTTACTGTTA
1 ACTATTTACTGTTA
75727929 TTTCAATAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 24 0.55
36 20 0.45
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (36 bp):
ACTATTTACTGTTACTGCACTGTTTACTGTTACTGC
Found at i:75737130 original size:8 final size:8
Alignment explanation
Indices: 75737117--75737141 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75737107 AACCTAGTGG
75737117 TGCCACCT
1 TGCCACCT
75737125 TGCCACCT
1 TGCCACCT
75737133 TGCCACCT
1 TGCCACCT
75737141 T
1 T
75737142 TAATTTACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.48, G:0.12, T:0.28
Consensus pattern (8 bp):
TGCCACCT
Found at i:75747761 original size:50 final size:50
Alignment explanation
Indices: 75747685--75748030 Score: 452
Period size: 50 Copynumber: 7.0 Consensus size: 50
75747675 AATGATCTAT
**
75747685 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGA-
1 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
* * *
75747734 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAC
1 T-GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
* **
75747785 TGT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGA-
1 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
* * *
75747833 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAC
1 T-GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
* **
75747884 TGT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGA-
1 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
* * *
75747932 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAC
1 T-GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
* *
75747983 TGT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
75748031 TAGCTTCGGC
Statistics
Matches: 255, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
48 2 0.01
49 123 0.48
50 127 0.50
51 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (50 bp):
TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC
Found at i:75747861 original size:99 final size:99
Alignment explanation
Indices: 75747690--75748021 Score: 664
Period size: 99 Copynumber: 3.4 Consensus size: 99
75747680 TCTATTGTGA
75747690 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
75747755 ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
66 ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
75747789 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
75747854 ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
66 ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
75747888 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
75747953 ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
66 ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
75747987 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
75748022 CGTACCAGAT
Statistics
Matches: 233, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 233 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (99 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGTGTGTAGT
ACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
Found at i:75750878 original size:15 final size:15
Alignment explanation
Indices: 75750858--75750911 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
75750848 TATCGTATCT
75750858 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
75750873 TGGGTTT-TTCTA-TC
1 TGGGTTTCTT-TATTC
*
75750887 TTAGGTTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
75750903 -GGTTTTCTT
1 TGGGTTTCTT
75750912 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
14 11 0.34
15 17 0.53
16 4 0.12
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:75754655 original size:53 final size:54
Alignment explanation
Indices: 75754565--75754794 Score: 216
Period size: 53 Copynumber: 4.3 Consensus size: 54
75754555 AATACTAAGG
* * * *
75754565 TTACATGG-GTTCCTTTCCTTTTA-AACTTACCATTGCCATGTCTTGACATGGTC
1 TTACATGGTG-TCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGACATGGTC
* * *
75754618 TTACGTGGTGTCCTTGCCTTAT-GAACTTACCATTGCCATGCCTTGGCATGGTC
1 TTACATGGTGTCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGACATGGTC
** ** * *
75754671 TTACATGG-GATATTTGCCTTATAGTAGTTTATCAATGCCATGTCTTGACATGGTC
1 TTACATGGTG-TCCTTGCCTTATAG-AACTTACCAATGCCATGCCTTGACATGGTC
* * * * * *
75754726 TTACATGATTTCCTTGCCTTGTAAAACTTACCAATGCCATGCCTTGGCATGGAC
1 TTACATGGTGTCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGACATGGTC
* *
75754780 TTACTTGGTATCCTT
1 TTACATGGTGTCCTT
75754795 AAACCCTAAT
Statistics
Matches: 142, Mismatches: 29, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
52 1 0.01
53 62 0.44
54 38 0.27
55 41 0.29
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (54 bp):
TTACATGGTGTCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGACATGGTC
Found at i:75762150 original size:53 final size:54
Alignment explanation
Indices: 75762070--75762276 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
75762060 TTCCTTTTTA
* * *
75762070 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * **
75762123 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATGTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
75762177 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
75762232 AACTTACCAATGCCATGCATTGGCATGGTCTTACTTTGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
75762277 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 39 0.33
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:75765754 original size:15 final size:15
Alignment explanation
Indices: 75765734--75765764 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75765724 CTCAGACAAA
75765734 TAGACAAATAACACG
1 TAGACAAATAACACG
75765749 TAGACAAATAACACG
1 TAGACAAATAACACG
75765764 T
1 T
75765765 TGAGCAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.13, T:0.16
Consensus pattern (15 bp):
TAGACAAATAACACG
Found at i:75767984 original size:2 final size:2
Alignment explanation
Indices: 75767979--75768011 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
75767969 TCTCTCCCCT
75767979 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
75768012 AATTCCTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:75768175 original size:16 final size:17
Alignment explanation
Indices: 75768144--75768176 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
75768134 CTAAGATAAA
*
75768144 AAAATCATTTTTAAAAT
1 AAAATCATTTTAAAAAT
75768161 AAAAT-ATTTTAAAAAT
1 AAAATCATTTTAAAAAT
75768177 GCTGAACGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATCATTTTAAAAAT
Found at i:75774240 original size:21 final size:21
Alignment explanation
Indices: 75774216--75774257 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
75774206 CAACTGAAGT
75774216 ATAGCATTCATATAACTAAAC
1 ATAGCATTCATATAACTAAAC
75774237 ATAGCATTCATATAACTAAAC
1 ATAGCATTCATATAACTAAAC
75774258 GGATAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.05, T:0.29
Consensus pattern (21 bp):
ATAGCATTCATATAACTAAAC
Found at i:75774584 original size:40 final size:40
Alignment explanation
Indices: 75774538--75774762 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
75774528 CTTGTGCAAG
* * *
75774538 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
75774578 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
75774618 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
75774658 GCCTTCGGGTCTTAGCCCGGATATA-ACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
75774698 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
75774739 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
75774763 CGTTCGAATA
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:75774633 original size:80 final size:80
Alignment explanation
Indices: 75774502--75774762 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
75774492 GTCAAGAAAT
* * * ** * * *
75774502 CTTCGGGATTTAG-CCGGATATAACTACTTGTGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
*
75774565 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
75774580 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAAAGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATA-ACAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
75774644 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
75774660 CTTCGGGTCTTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
*
75774725 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
75774741 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75774763 CGTTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 14 0.09
80 92 0.61
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:75782132 original size:40 final size:40
Alignment explanation
Indices: 75782086--75782310 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
75782076 CTTGCGCAAG
* * *
75782086 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
75782126 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
75782166 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
** * *
75782206 GCCTTCGGGTCTTAGCCCGGATATAGAAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
75782246 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
75782287 GCCTTCGGGACTTAGCTCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
75782311 CATTCGAATA
Statistics
Matches: 156, Mismatches: 28, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 129 0.83
41 27 0.17
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:75791109 original size:38 final size:38
Alignment explanation
Indices: 75791053--75791127 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
75791043 ATTACTCGGT
*
75791053 CTCAAATTCTATACATTCTCTTGTTCAGCAGATTCAGC
1 CTCAAATTCTATACATTCTCTTATTCAGCAGATTCAGC
* * *
75791091 CTCAAATTCTGTAGATTCTCTTATTCAGCAGGTTCAG
1 CTCAAATTCTATACATTCTCTTATTCAGCAGATTCAG
75791128 AACAATCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (38 bp):
CTCAAATTCTATACATTCTCTTATTCAGCAGATTCAGC
Found at i:75793005 original size:27 final size:27
Alignment explanation
Indices: 75792972--75793258 Score: 358
Period size: 27 Copynumber: 10.6 Consensus size: 27
75792962 TTAGTTTATC
75792972 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
75792999 AAGTTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75793026 AAATCACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
75793053 AAATTACAAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75793080 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * *
75793107 AAATTACTTAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75793134 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75793161 AAACTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75793188 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75793215 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
75793242 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
75793259 TCGACCTGTA
Statistics
Matches: 222, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 222 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75793154 original size:108 final size:108
Alignment explanation
Indices: 75792972--75793258 Score: 414
Period size: 108 Copynumber: 2.7 Consensus size: 108
75792962 TTAGTTTATC
* * * *
75792972 AAATTACCAAAATACCCCTGGTTTGTAAAGTTACTAAAATACCCTTGGTTTATAAAATCACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACTAAA
* *
75793037 ATACCCCTGGTTTGTAAAATTACAAAAATACCCTTGGTTTACA
66 ATACCCCTGGTTTGTAAAACTACAAAAATACCCCTGGTTTACA
*
75793080 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTTAAATACCCTTTGTTTATAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACTAAA
* **
75793145 ATACCCCTGGTTTGTAAAACTACCAAAATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTAAAACTACAAAAATACCCCTGGTTTACA
* * * * * *
75793188 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTGATTTGTGAAATTACTGA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTG-TTTATAAAATTACTAA
75793252 AATACCC
65 AATACCC
75793259 TCGACCTGTA
Statistics
Matches: 161, Mismatches: 17, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
107 2 0.01
108 159 0.99
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACTAAA
ATACCCCTGGTTTGTAAAACTACAAAAATACCCCTGGTTTACA
Found at i:75793269 original size:81 final size:80
Alignment explanation
Indices: 75792963--75793314 Score: 348
Period size: 81 Copynumber: 4.3 Consensus size: 80
75792953 TTAGAAACTT
* * * * * *
75792963 TAGTTTATCAAATTACCAAAATACCCCTGGTTTGTAAAGTTACTAAAATACCCTTGGTTTATAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CGATTTGTAAA
*
75793028 ATCACTAAAATACCCC
65 ATTACTAAAATACCCC
* * * * ** *
75793044 TGGTTTGTAAAATTACAAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGA-TTTGTAAA
* *
75793109 ATTACTTAAATACCCT
65 ATTACTAAAATACCCC
* * * *
75793125 TTGTTTATAAAATTACTAAAATACCCCTGGTTTGTAAAACTACCAAAATACCCCTGGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC-GATTTGTAAA
75793190 ATTA-TCAAAATACCCC
65 ATTACT-AAAATACCCC
* * * ** **
75793206 TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CGATTTGTAAA
* *
75793271 ATTATTGAAATA-CCC
65 ATTACTAAAATACCCC
* * *
75793286 TCGACTTATAAAATTACCAAAGTACCCCT
1 TAG-TTTATAAAATTACCAAAATACCCCT
75793315 AATTTACAGA
Statistics
Matches: 222, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
80 6 0.03
81 214 0.96
82 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (80 bp):
TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGATTTGTAAAA
TTACTAAAATACCCC
Found at i:75793272 original size:27 final size:27
Alignment explanation
Indices: 75793102--75793302 Score: 108
Period size: 27 Copynumber: 7.4 Consensus size: 27
75793092 TACCCCTAGT
* * *
75793102 TTGTAAAATTACTTAAATACCCTTTG-T
1 TTGTAAAATTACTGAAATACCC-TCGAC
* * **
75793129 TTATAAAATTACTAAAATACCC-CTGGT
1 TTGTAAAATTACTGAAATACCCTC-GAC
* ** **
75793156 TTGTAAAACTACCAAAATACCC-CTGGT
1 TTGTAAAATTACTGAAATACCCTC-GAC
* * *
75793183 TTGTAAAATTA-TCAAAATACCC-CTAGT
1 TTGTAAAATTACT-GAAATACCCTCGA-C
** *
75793210 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACTGAAATACCCTC-GAC
*
75793237 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* *
75793264 CTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
*
75793291 TTATAAAATTAC
1 TTGTAAAATTAC
75793303 CAAAGTACCC
Statistics
Matches: 145, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 142 0.98
28 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:75793328 original size:81 final size:81
Alignment explanation
Indices: 75793213--75793367 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 81
75793203 CCCTAGTTTG
* ** * **
75793213 TAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTG
1 TAAAATTACCAAAATACCCCTAATTTCAGAAATTACCGAAATACCCTCGACCTACAAAATTATTG
75793278 AAATACCCTCGACTTA
66 AAATACCCTCGACTTA
* *** **
75793294 TAAAATTACCAAAGTACCCCTAATTTACAG-AATTACCGTTTTACCCTCGATTTACAAAATTATT
1 TAAAATTACCAAAATACCCCTAATTT-CAGAAATTACCGAAATACCCTCGACCTACAAAATTATT
75793358 GAAATACCCT
65 GAAATACCCT
75793368 TGTAGGGTAG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTAATTTCAGAAATTACCGAAATACCCTCGACCTACAAAATTATTG
AAATACCCTCGACTTA
Found at i:75793365 original size:27 final size:27
Alignment explanation
Indices: 75793242--75793367 Score: 85
Period size: 27 Copynumber: 4.7 Consensus size: 27
75793232 CTGATTTGTG
* **
75793242 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* *
75793269 AAATTATTGAAATACCCTCGACTTATA
1 AAATTACTGAAATACCCTCGACTTACA
* * *
75793296 AAATTAC-CAAAGTACCC-CTAATTTACA
1 AAATTACTGAAA-TACCCTC-GACTTACA
* * *** *
75793323 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGACTTACA
*
75793350 AAATTATTGAAATACCCT
1 AAATTACTGAAATACCCT
75793368 TGTAGGGTAG
Statistics
Matches: 75, Mismatches: 20, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
26 4 0.05
27 70 0.93
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTTACA
Found at i:75793388 original size:27 final size:27
Alignment explanation
Indices: 75793358--75793569 Score: 282
Period size: 27 Copynumber: 7.9 Consensus size: 27
75793348 CAAAATTATT
*
75793358 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
75793385 GAAATACCCCTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
75793412 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
75793439 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAAATACC
* *
75793466 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAAATACC
* *
75793493 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
*
75793520 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
75793547 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
75793570 TACCATTTTA
Statistics
Matches: 165, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 3 0.02
27 162 0.98
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATACC
Found at i:75793584 original size:81 final size:80
Alignment explanation
Indices: 75793351--75793574 Score: 324
Period size: 81 Copynumber: 2.8 Consensus size: 80
75793341 CGATTTACAA
* * * *
75793351 AATTATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC-AAA
75793416 TACCCCTATAGGGTAG
65 TACCCCTATAGGGTAG
* * *
75793432 AATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATA-CCAAA
*
75793497 TACCCCTGTAGGGTAG
65 TACCCCTATAGGGTAG
* *
75793513 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA-AAATTACCA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCA
75793575 TTTTACCCCT
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 5 0.04
81 122 0.95
82 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (80 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAT
ACCCCTATAGGGTAG
Found at i:75793937 original size:26 final size:27
Alignment explanation
Indices: 75793908--75793967 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
75793898 CCACATATAT
*
75793908 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
75793934 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
75793961 ATATCTG
1 ATATCTG
75793968 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:75794095 original size:6 final size:6
Alignment explanation
Indices: 75794086--75794269 Score: 101
Period size: 6 Copynumber: 29.8 Consensus size: 6
75794076 TTGCATTCAC
* *
75794086 ATTCTG ATTCTG ATTCTG -TTACCTA ATAT-TG ATTCTG ATTCT- ATTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATT--CTG
* * * * *
75794136 ATTCTA ATTCTG GTTCTA ATCCTG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
75794185 ATTCTG -TTACCTG ATTTTG ATTCTG ATTTTG ATTTTG ATTCT- ATCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
75794235 ATTCTG ATTCTA ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
75794270 AGTTCTGTGA
Statistics
Matches: 138, Mismatches: 23, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 13 0.09
6 103 0.75
7 11 0.08
8 10 0.07
9 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75794139 original size:19 final size:19
Alignment explanation
Indices: 75794117--75794183 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
75794107 CCTAATATTG
75794117 ATTCTGATTCTATTACCTA
1 ATTCTGATTCTATTACCTA
* *
75794136 ATTCTAATTCTGGTT--CTA
1 ATTCTGATTCT-ATTACCTA
* *
75794154 ATCCTGATTCTATTACCTG
1 ATTCTGATTCTATTACCTA
*
75794173 ATACTGATTCT
1 ATTCTGATTCT
75794184 GATTCTGTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
17 2 0.05
18 12 0.32
19 22 0.58
20 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.09, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTATTACCTA
Found at i:75794145 original size:25 final size:25
Alignment explanation
Indices: 75794086--75794153 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
75794076 TTGCATTCAC
*
75794086 ATTCTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTATTACCTA
75794111 ATAT-TGATTCTGATTCTATTACCTA
1 AT-TCTGATTCTGATTCTATTACCTA
* *
75794136 ATTCTAATTCTGGTTCTA
1 ATTCTGATTCTGATTCTA
75794154 ATCCTGATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATTACCTA
Found at i:75794187 original size:25 final size:25
Alignment explanation
Indices: 75794157--75794212 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
75794147 GGTTCTAATC
75794157 CTGATTCTATTACCTGATACTGATT
1 CTGATTCTATTACCTGATACTGATT
* **
75794182 CTGATTCTGTTACCTGATTTTGATT
1 CTGATTCTATTACCTGATACTGATT
75794207 CTGATT
1 CTGATT
75794213 TTGATTTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTATTACCTGATACTGATT
Found at i:75794195 original size:62 final size:62
Alignment explanation
Indices: 75794086--75794252 Score: 181
Period size: 62 Copynumber: 2.7 Consensus size: 62
75794076 TTGCATTCAC
* * * * * *
75794086 ATTCTGATTCTGATTCTGTTACCTAATATTGATTCTGATTCTATTACCTAATTCTAATTCTG
1 ATTCTAATCCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
* * * *
75794148 GTTCTAATCCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTGATTTTGATTCTG
1 ATTCTAATCCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
* * ** * * *
75794210 ATTTTGATTTTGATTCTATCACCTGATTCTGATTCTAATTCTG
1 ATTCTAATCCTGATTCTATTACCTGATACTGATTCTGATTCTG
75794253 ATTCTCATTT
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49
Consensus pattern (62 bp):
ATTCTAATCCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
Found at i:75794211 original size:37 final size:37
Alignment explanation
Indices: 75794156--75794257 Score: 116
Period size: 37 Copynumber: 2.7 Consensus size: 37
75794146 TGGTTCTAAT
* * *
75794156 CCTGATTCT-ATTACCTGATACTGATTCTGATTCTGTTA
1 CCTGATTCTGATT--CTGATTCTGATTCTGATTCTATCA
* * *
75794194 CCTGATTTTGATTCTGATTTTGATTTTGATTCTATCA
1 CCTGATTCTGATTCTGATTCTGATTCTGATTCTATCA
*
75794231 CCTGATTCTGATTCTAATTCTGATTCT
1 CCTGATTCTGATTCTGATTCTGATTCT
75794258 CATTTTGATT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
37 42 0.79
38 8 0.15
39 3 0.06
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (37 bp):
CCTGATTCTGATTCTGATTCTGATTCTGATTCTATCA
Found at i:75794246 original size:19 final size:18
Alignment explanation
Indices: 75794142--75794246 Score: 65
Period size: 19 Copynumber: 5.7 Consensus size: 18
75794132 CCTAATTCTA
*
75794142 ATTCTGGTTCTA-ATCCTG
1 ATTCTGATTCTATA-CCTG
75794160 ATTCT-ATTACCTGATA-CTG
1 ATTCTGATT--CT-ATACCTG
*
75794179 ATTCTGATTCTGTTACCTG
1 ATTCTGATTCT-ATACCTG
* **
75794198 ATTTTGATTCTGAT-TTTG
1 ATTCTGATTCT-ATACCTG
*
75794216 ATTTTGATTCTATCACCTG
1 ATTCTGATTCTAT-ACCTG
75794235 ATTCTGATTCTA
1 ATTCTGATTCTA
75794247 ATTCTGATTC
Statistics
Matches: 70, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
17 4 0.06
18 23 0.33
19 38 0.54
20 4 0.06
21 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTATACCTG
Found at i:75795171 original size:91 final size:91
Alignment explanation
Indices: 75795076--75795257 Score: 355
Period size: 91 Copynumber: 2.0 Consensus size: 91
75795066 TTCGGCCTAG
75795076 GTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGTTAATGATGCATGTGATGATG
1 GTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGTTAATGATGCATGTGATGATG
*
75795141 GCTTGATGATTCTTGAACCTGCTTTT
66 GCTTGATGATTCTTGAACCTCCTTTT
75795167 GTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGTTAATGATGCATGTGATGATG
1 GTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGTTAATGATGCATGTGATGATG
75795232 GCTTGATGATTCTTGAACCTCCTTTT
66 GCTTGATGATTCTTGAACCTCCTTTT
75795258 TAGCATTTTT
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (91 bp):
GTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGTTAATGATGCATGTGATGATG
GCTTGATGATTCTTGAACCTCCTTTT
Found at i:75796029 original size:80 final size:79
Alignment explanation
Indices: 75795878--75796174 Score: 234
Period size: 80 Copynumber: 3.8 Consensus size: 79
75795868 TTGAATGCTG
* * * * * * * * * *
75795878 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCTGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
75795942 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * * *
75795958 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
75796023 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
75796038 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTT-
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA-TTC
** *
75796102 GAACGATGA-GCT--A
65 GTGCGA-GATACTAAA
* * *
75796115 T----GTCTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGT-TAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
75796175 TGAACGAGGA
Statistics
Matches: 186, Mismatches: 26, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
73 4 0.02
74 54 0.29
77 2 0.01
79 39 0.21
80 83 0.45
81 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:75796082 original size:39 final size:39
Alignment explanation
Indices: 75795931--75796174 Score: 214
Period size: 40 Copynumber: 6.3 Consensus size: 39
75795921 GGACTAAGAT
* * * * *
75795931 CCGAAGGCCTTTGTGCGAGATACTAAATCTGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAAACCGGGTTATGTC
* * *
75795971 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAAACCGGGTTATGTC
** *
75796011 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAAACCGGGTTATGTC
* *
75796051 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAAACCGGGTTATGTC
** * *
75796090 CCGAAGGCACTTGAACGA-TGAGCT---A---TGTCTATGTC
1 CCGAAGGCA-TTGTGCGAGTTA-CTAAAACCGGGT-TATGTC
* *
75796125 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAAACCGGGTTATGTC
75796164 CCGAAGGCATT
1 CCGAAGGCATT
75796175 TGAACGAGGA
Statistics
Matches: 170, Mismatches: 23, Indels: 23
0.79 0.11 0.11
Matches are distributed among these distances:
34 8 0.05
35 17 0.10
37 2 0.01
39 54 0.32
40 89 0.52
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAAACCGGGTTATGTC
Found at i:75796141 original size:74 final size:74
Alignment explanation
Indices: 75796045--75796189 Score: 272
Period size: 74 Copynumber: 2.0 Consensus size: 74
75796035 AAATCCGGGT
*
75796045 TATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTTGAACGATG
1 TATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTTGAACGAGG
75796110 AGCTATGTC
66 AGCTATGTC
*
75796119 TATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGG
1 TATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTTGAACGAGG
75796184 AGCTAT
66 AGCTAT
75796190 ATCCGGTTAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (74 bp):
TATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTTGAACGAGG
AGCTATGTC
Found at i:75799290 original size:90 final size:90
Alignment explanation
Indices: 75799192--75799371 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
75799182 AGGAAGTATT
75799192 AAGTTCAACATATGAAGATCATAAATAAGCCTTATGATTGTTTTGCTTGATTGATGAGAAATTGT
1 AAGTTCAACATATGAAGATCATAAATAAGCCTTATGATTGTTTTGCTTGATTGATGAGAAATTGT
75799257 GATGAATGAAGAATATTATCTATGA
66 GATGAATGAAGAATATTATCTATGA
75799282 AAGTTCAACATATGAAGATCATAAATAAGCCTTATGATTGTTTTGCTTGATTGATGAGAAATTGT
1 AAGTTCAACATATGAAGATCATAAATAAGCCTTATGATTGTTTTGCTTGATTGATGAGAAATTGT
75799347 GATGAATGAAGAATATTATCTATGA
66 GATGAATGAAGAATATTATCTATGA
75799372 CTGTGACATA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.36
Consensus pattern (90 bp):
AAGTTCAACATATGAAGATCATAAATAAGCCTTATGATTGTTTTGCTTGATTGATGAGAAATTGT
GATGAATGAAGAATATTATCTATGA
Found at i:75808372 original size:26 final size:25
Alignment explanation
Indices: 75808332--75808381 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
75808322 TTCTTTATCC
75808332 TTTCATTCACATTCCACATTCCTTTG
1 TTTCATTCACATTCC-CATTCCTTTG
*
75808358 TTTCATTC-CATTTCCCTTTCCTTT
1 TTTCATTCACA-TTCCCATTCCTTT
75808382 TTCCCCACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.14, C:0.32, G:0.02, T:0.52
Consensus pattern (25 bp):
TTTCATTCACATTCCCATTCCTTTG
Found at i:75811016 original size:51 final size:51
Alignment explanation
Indices: 75810940--75811042 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
75810930 GACTTCCGTT
75810940 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
1 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
75810991 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
1 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
75811042 A
1 A
75811043 GGTTGATAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (51 bp):
ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
Found at i:75860030 original size:32 final size:32
Alignment explanation
Indices: 75859989--75860053 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
75859979 GACTTCACCA
*
75859989 TGCATATTAACCTCATCTTCTAGTCATGGCAT
1 TGCATATTAACCTCACCTTCTAGTCATGGCAT
75860021 TGCATATTAACCTCACCTTCTAGTCATGGCAT
1 TGCATATTAACCTCACCTTCTAGTCATGGCAT
75860053 T
1 T
75860054 ATGGCACTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (32 bp):
TGCATATTAACCTCACCTTCTAGTCATGGCAT
Found at i:75872339 original size:30 final size:30
Alignment explanation
Indices: 75872282--75872341 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
75872272 GGTTTTTGAA
* *
75872282 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
75872312 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
75872342 TAAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:75878782 original size:21 final size:20
Alignment explanation
Indices: 75878753--75878798 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
75878743 CGAAATGCAA
75878753 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
75878774 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
75878794 T-AACC
1 TCAACC
75878799 ATTCCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:75885146 original size:103 final size:103
Alignment explanation
Indices: 75884909--75885264 Score: 579
Period size: 103 Copynumber: 3.5 Consensus size: 103
75884899 TGGATTCCGC
*
75884909 ACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
* * *
75884974 GCAACCCCC-TTCACATTTCAGATGCGGTGGAATCAGT
66 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
* * ** *
75885011 ACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACTTA
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
75885076 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
66 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
75885114 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
* *
75885179 GCAACCCCCTTTCACATTTAAAATATGGTGGAATCAGC
66 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
* * *
75885217 ACTTAGAAACCACCAATGAATCGGAGAATCAACACACAACAACCCCTT
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTT
75885265 TATATGCAAT
Statistics
Matches: 236, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
102 70 0.30
103 166 0.70
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.19
Consensus pattern (103 bp):
ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
Found at i:75886350 original size:7 final size:7
Alignment explanation
Indices: 75886333--75886385 Score: 97
Period size: 7 Copynumber: 7.4 Consensus size: 7
75886323 CCTTTCTTTC
75886333 TTTCTTTA
1 TTTC-TTA
75886341 TTTCTTA
1 TTTCTTA
75886348 TTTCTTA
1 TTTCTTA
75886355 TTTCTTA
1 TTTCTTA
75886362 TTTCTTA
1 TTTCTTA
75886369 TTTCTTA
1 TTTCTTA
75886376 TTTCTTA
1 TTTCTTA
75886383 TTT
1 TTT
75886386 TCATTAGTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 41 0.91
8 4 0.09
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTCTTA
Found at i:75886424 original size:14 final size:14
Alignment explanation
Indices: 75886338--75886445 Score: 56
Period size: 14 Copynumber: 7.3 Consensus size: 14
75886328 CTTTCTTTCT
* *
75886338 TTATTTCTTATTTC
1 TTATTTATTATTTA
* *
75886352 TTATTTCTTATTTC
1 TTATTTATTATTTA
* *
75886366 TTATTTCTTATTTC
1 TTATTTATTATTTA
*
75886380 TTATTTTCATTAGTTATT
1 TTA-TTT-ATTA-TT-TA
*
75886398 TTACTTTGTTTATTTA
1 TTA-TTT-ATTATTTA
* *
75886414 TTGTTTATTATCTA
1 TTATTTATTATTTA
75886428 TTATTTATT-TTTA
1 TTATTTATTATTTA
75886441 GTTAT
1 -TTAT
75886446 ATTCCTTTCG
Statistics
Matches: 78, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
13 3 0.04
14 49 0.63
15 6 0.08
16 6 0.08
17 4 0.05
18 10 0.13
ACGTcount: A:0.19, C:0.08, G:0.04, T:0.69
Consensus pattern (14 bp):
TTATTTATTATTTA
Found at i:75888140 original size:5 final size:5
Alignment explanation
Indices: 75888130--75888186 Score: 64
Period size: 5 Copynumber: 11.2 Consensus size: 5
75888120 ATTAAGTCCA
*
75888130 TTTAT TTTAT TTTAT TTTAT TTTATT TTTACT TTTAT TTT-T TAT-T TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTA-T TTTAT TTTAT TTTAT TTTAT
75888180 GTTTAT T
1 -TTTAT T
75888187 GTAATTTTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
4 6 0.13
5 25 0.54
6 15 0.33
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:75888170 original size:6 final size:6
Alignment explanation
Indices: 75888130--75888186 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
75888120 ATTAAGTCCA
*
75888130 TTTA-T TTTA-T TTTA-T TTTA-T TTTATT TTTACT TTTATTT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT TTTATT
*
75888175 TTTATG TTTATT
1 TTTATT TTTATT
75888187 GTAATTTTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
5 19 0.41
6 22 0.48
7 5 0.11
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:75890396 original size:311 final size:311
Alignment explanation
Indices: 75889833--75890454 Score: 1244
Period size: 311 Copynumber: 2.0 Consensus size: 311
75889823 CATAAGCAAA
75889833 TCTTCAGGAAAATCTCCGGTTTCTTTAAATCTTCAAGGAATTTGTATAATTAAACCAAAAAATGG
1 TCTTCAGGAAAATCTCCGGTTTCTTTAAATCTTCAAGGAATTTGTATAATTAAACCAAAAAATGG
75889898 TTTATGACATCCATGTGCAGCTAAAAGTTGGGTTGACTTGGTCCCCAATTTGGACGGTTTTGCAA
66 TTTATGACATCCATGTGCAGCTAAAAGTTGGGTTGACTTGGTCCCCAATTTGGACGGTTTTGCAA
75889963 TTCGAAGAAAACTCTCAGACCTGTCCAAAAATAGTAGATAGTTTAGAGGACCAAATAATATAATT
131 TTCGAAGAAAACTCTCAGACCTGTCCAAAAATAGTAGATAGTTTAGAGGACCAAATAATATAATT
75890028 TAACCACTTTAATTAATCAATTTACTTGATTAATTAAAACCCAATTTATTAATTAATTATTAAAA
196 TAACCACTTTAATTAATCAATTTACTTGATTAATTAAAACCCAATTTATTAATTAATTATTAAAA
75890093 ATGAATTATTAAATATAAATTTATATTTTATTATTTAATCTAATCATCCAC
261 ATGAATTATTAAATATAAATTTATATTTTATTATTTAATCTAATCATCCAC
75890144 TCTTCAGGAAAATCTCCGGTTTCTTTAAATCTTCAAGGAATTTGTATAATTAAACCAAAAAATGG
1 TCTTCAGGAAAATCTCCGGTTTCTTTAAATCTTCAAGGAATTTGTATAATTAAACCAAAAAATGG
75890209 TTTATGACATCCATGTGCAGCTAAAAGTTGGGTTGACTTGGTCCCCAATTTGGACGGTTTTGCAA
66 TTTATGACATCCATGTGCAGCTAAAAGTTGGGTTGACTTGGTCCCCAATTTGGACGGTTTTGCAA
75890274 TTCGAAGAAAACTCTCAGACCTGTCCAAAAATAGTAGATAGTTTAGAGGACCAAATAATATAATT
131 TTCGAAGAAAACTCTCAGACCTGTCCAAAAATAGTAGATAGTTTAGAGGACCAAATAATATAATT
75890339 TAACCACTTTAATTAATCAATTTACTTGATTAATTAAAACCCAATTTATTAATTAATTATTAAAA
196 TAACCACTTTAATTAATCAATTTACTTGATTAATTAAAACCCAATTTATTAATTAATTATTAAAA
75890404 ATGAATTATTAAATATAAATTTATATTTTATTATTTAATCTAATCATCCAC
261 ATGAATTATTAAATATAAATTTATATTTTATTATTTAATCTAATCATCCAC
75890455 GGCCCACTTT
Statistics
Matches: 311, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
311 311 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (311 bp):
TCTTCAGGAAAATCTCCGGTTTCTTTAAATCTTCAAGGAATTTGTATAATTAAACCAAAAAATGG
TTTATGACATCCATGTGCAGCTAAAAGTTGGGTTGACTTGGTCCCCAATTTGGACGGTTTTGCAA
TTCGAAGAAAACTCTCAGACCTGTCCAAAAATAGTAGATAGTTTAGAGGACCAAATAATATAATT
TAACCACTTTAATTAATCAATTTACTTGATTAATTAAAACCCAATTTATTAATTAATTATTAAAA
ATGAATTATTAAATATAAATTTATATTTTATTATTTAATCTAATCATCCAC
Found at i:75891289 original size:22 final size:22
Alignment explanation
Indices: 75891263--75891318 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 22
75891253 CTGTGGTGTA
75891263 GTGGCAAGGTGGCGACACAGGT
1 GTGGCAAGGTGGCGACACAGGT
*
75891285 GTGGCAAGGAGGTGGCGTCACAGGT
1 GTGGC-A--AGGTGGCGACACAGGT
*
75891310 GTGGTAAGG
1 GTGGCAAGG
75891319 AGGTCAGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 8 0.28
23 1 0.03
24 1 0.03
25 19 0.66
ACGTcount: A:0.21, C:0.14, G:0.48, T:0.16
Consensus pattern (22 bp):
GTGGCAAGGTGGCGACACAGGT
Found at i:75891297 original size:25 final size:25
Alignment explanation
Indices: 75891269--75891322 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
75891259 TGTAGTGGCA
75891269 AGGTGGCGACACAGGTGTGGCAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
* *
75891294 AGGTGGCGTCACAGGTGTGGTAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
75891319 AGGT
1 AGGT
75891323 CAGAGGTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.22, C:0.13, G:0.48, T:0.17
Consensus pattern (25 bp):
AGGTGGCGACACAGGTGTGGCAAGG
Found at i:75891466 original size:24 final size:24
Alignment explanation
Indices: 75891439--75891484 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
75891429 CAAATGAGTG
* *
75891439 ATTTAATGAGTGGATCATGGAGGA
1 ATTTAAGGAGGGGATCATGGAGGA
75891463 ATTTAAGGAGGGGATCATGGAG
1 ATTTAAGGAGGGGATCATGGAG
75891485 AGGTAAGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.37, T:0.26
Consensus pattern (24 bp):
ATTTAAGGAGGGGATCATGGAGGA
Found at i:75897209 original size:111 final size:112
Alignment explanation
Indices: 75897015--75897232 Score: 366
Period size: 111 Copynumber: 2.0 Consensus size: 112
75897005 AGCCACCCCA
* *
75897015 CCTTTAGGTTTCAATGCAGCTTTTACTTTTCCAGGCTTGTGCCTACCTTTGCCCTTAGGCTTTGT
1 CCTTTAGGTTTCAATGCAGCCTTTACTTTTCCAGGCTTGGGCCTACCTTTGCCCTTAGGCTTTGT
*
75897080 CTGAAATTTTGCCTTTCCCTTGCCCTT-TTATTACGGACCATAACCT
66 CTGAAATTTGGCCTTTCCCTTGCCCTTATTATTACGGACCATAACCT
* *
75897126 CCTTTAGGTTTCAATGCAGCCTTTACTTTTCCAGGCTTGGGCCTAGCTTTGCCCTTGGGCTTTGT
1 CCTTTAGGTTTCAATGCAGCCTTTACTTTTCCAGGCTTGGGCCTACCTTTGCCCTTAGGCTTTGT
* *
75897191 TTGAACTTTGGCCTTTCCCTTGCCCTTATTATTACGGACCAT
66 CTGAAATTTGGCCTTTCCCTTGCCCTTATTATTACGGACCAT
75897233 TAGTATAGGC
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
111 85 0.86
112 14 0.14
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (112 bp):
CCTTTAGGTTTCAATGCAGCCTTTACTTTTCCAGGCTTGGGCCTACCTTTGCCCTTAGGCTTTGT
CTGAAATTTGGCCTTTCCCTTGCCCTTATTATTACGGACCATAACCT
Found at i:75898221 original size:49 final size:49
Alignment explanation
Indices: 75898149--75898247 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
75898139 ACAACTATTG
*
75898149 TTCTAATCATCTTGTGATTTATCCAAATTACTTGCCTCTAGGTTTCTAA
1 TTCTAATCATCTTATGATTTATCCAAATTACTTGCCTCTAGGTTTCTAA
75898198 TTCTAATCATCTTATGATTTATCCAAATTACTTGCCTCTAGGTTTCTAA
1 TTCTAATCATCTTATGATTTATCCAAATTACTTGCCTCTAGGTTTCTAA
75898247 T
1 T
75898248 CCTATTAGAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.25, C:0.20, G:0.09, T:0.45
Consensus pattern (49 bp):
TTCTAATCATCTTATGATTTATCCAAATTACTTGCCTCTAGGTTTCTAA
Found at i:75899496 original size:27 final size:27
Alignment explanation
Indices: 75899436--75899498 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
75899426 AAGAGGTTGT
* *
75899436 TAAAATAACCGAAAGACCCCCATAGGG
1 TAAAATGACCGAAAGAACCCCATAGGG
* *
75899463 TAAAATGACCGAAATAACTCCATAGGG
1 TAAAATGACCGAAAGAACCCCATAGGG
75899490 TAAAATGAC
1 TAAAATGAC
75899499 TGTTATACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.16
Consensus pattern (27 bp):
TAAAATGACCGAAAGAACCCCATAGGG
Found at i:75901186 original size:27 final size:27
Alignment explanation
Indices: 75901145--75901196 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
75901135 ATCAATGAAT
75901145 AGGGGAATCAACACTTAGCAACCCCTC
1 AGGGGAATCAACACTTAGCAACCCCTC
* *
75901172 AGGGGAGTCAGCACTTAGCAACCCC
1 AGGGGAATCAACACTTAGCAACCCC
75901197 CTTTCACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (27 bp):
AGGGGAATCAACACTTAGCAACCCCTC
Found at i:75901188 original size:102 final size:103
Alignment explanation
Indices: 75901009--75901237 Score: 334
Period size: 102 Copynumber: 2.2 Consensus size: 103
75900999 TAACCGTTAT
* * * **
75901009 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAACACACAGCAACCCCTCAGGG
* * *
75901074 GAATCAGTACTTAGCAACCCCC-TTCACATTTCAGATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* * **
75901111 CGGTGGAATCAGCACTTAGCAACTATCAATGAATAGGGGAATCAACACTTAGCAACCCCTCAGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAACACACAGCAACCCCTCAGGG
*
75901176 GAGTCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
75901214 CGGTGGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
75901238 CCCTTTCACA
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 76 0.68
103 36 0.32
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAACACACAGCAACCCCTCAGGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:75901240 original size:43 final size:43
Alignment explanation
Indices: 75901179--75901280 Score: 204
Period size: 43 Copynumber: 2.4 Consensus size: 43
75901169 CTCAGGGGAG
75901179 TCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAA
1 TCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAA
75901222 TCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAA
1 TCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAA
75901265 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
75901281 ACTAATGAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (43 bp):
TCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAA
Found at i:75901303 original size:33 final size:33
Alignment explanation
Indices: 75901261--75901407 Score: 99
Period size: 33 Copynumber: 4.3 Consensus size: 33
75901251 AAAATACGGT
75901261 GGAATCAGCACTTAGCAACCACTAATGAATCGG
1 GGAATCAGCACTTAGCAACCACTAATGAATCGG
** *
75901294 GGAATCAGCACACAGCAACCCCT--TG----GG
1 GGAATCAGCACTTAGCAACCACTAATGAATCGG
* * *
75901321 AGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC--T-A-A--T-GAAT-CGG
*
75901363 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACTAATGAATCGG
75901397 GGAATCAGCAC
1 GGAATCAGCAC
75901408 ACAACAACCC
Statistics
Matches: 87, Mismatches: 11, Indels: 32
0.67 0.08 0.25
Matches are distributed among these distances:
27 17 0.20
28 4 0.05
30 1 0.01
31 2 0.02
33 31 0.36
34 3 0.03
35 3 0.03
36 2 0.02
38 1 0.01
39 1 0.01
42 5 0.06
43 17 0.20
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.18
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACTAATGAATCGG
Found at i:75901335 original size:103 final size:103
Alignment explanation
Indices: 75901219--75901420 Score: 386
Period size: 103 Copynumber: 2.0 Consensus size: 103
75901209 AAATACGGTG
*
75901219 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACT
1 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACC
*
75901284 AATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGA
66 AATGAATCGGGGAATCAGCACACAACAACCCCTTGGGA
75901322 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACC
1 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACC
75901387 AATGAATCGGGGAATCAGCACACAACAACCCCTT
66 AATGAATCGGGGAATCAGCACACAACAACCCCTT
75901421 TATATGCAAT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 97 1.00
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (103 bp):
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACC
AATGAATCGGGGAATCAGCACACAACAACCCCTTGGGA
Found at i:75901336 original size:146 final size:145
Alignment explanation
Indices: 75901073--75901383 Score: 491
Period size: 146 Copynumber: 2.1 Consensus size: 145
75901063 ACCCCTTGGG
* * * *
75901073 GGAATCAGTACTTAGCAACCCCCTTCACATTTCAGATACGGTGGAATCAGCACTTAGCAACTATC
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCATC
** *
75901138 AATGAATAGGGGAATCAACACTTAGCAACCCCTCAGGGGAGTCAGCACTTAGCAACCCCCTTTCA
66 AATGAATAGGGGAATCAACACACAGCAACCCCTCAGGGGAATCAGCACTTAGCAACCCCCTTTCA
75901203 CATTTAAAATACGGT
131 CATTTAAAATACGGT
75901218 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA-
1 GGAATCAGCACTTAGCAACCCCC-TTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCAT
* * *
75901282 CTAATGAATCGGGGAATCAGCACACAGCAACCCCT-TGGGAGAATCAGCACTTAGCAACCCCCTT
65 C-AATGAATAGGGGAATCAACACACAGCAACCCCTCAGGG-GAATCAGCACTTAGCAACCCCCTT
75901346 TCACATTTAAAATACGGT
128 TCACATTTAAAATACGGT
75901364 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
75901384 ACCAATGAAT
Statistics
Matches: 153, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
145 26 0.17
146 127 0.83
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.22
Consensus pattern (145 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCATC
AATGAATAGGGGAATCAACACACAGCAACCCCTCAGGGGAATCAGCACTTAGCAACCCCCTTTCA
CATTTAAAATACGGT
Found at i:75908458 original size:75 final size:75
Alignment explanation
Indices: 75908366--75908539 Score: 269
Period size: 75 Copynumber: 2.3 Consensus size: 75
75908356 CAACCCCTTG
* * *
75908366 GGGGAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
75908430 ACCAATGAAT
66 ACCAATGAAT
75908440 AGGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAAC
1 -GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAAC
*
75908505 CTCCAATGAAT
65 CACCAATGAAT
* **
75908516 TGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
75908540 TTGGGGAATC
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
75 46 0.51
76 45 0.49
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.20
Consensus pattern (75 bp):
GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAAT
Found at i:75908559 original size:101 final size:102
Alignment explanation
Indices: 75908441--75908643 Score: 354
Period size: 101 Copynumber: 2.0 Consensus size: 102
75908431 CCAATGAATA
*
75908441 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAACACTTAGCAACC
* *
75908506 TCCAATGAAT-TGGGAATCAGCACACAGCAACCCCTT
66 ACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
*
75908542 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATATGGTGGAATCAACACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAACACTTAGCAACC
*
75908607 ACCAATGAATCGGGGAATCAGCACATAGCAACCCCTT
66 ACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
75908644 TTATGCAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
101 72 0.75
102 24 0.25
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAACACTTAGCAACC
ACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
Found at i:75908601 original size:177 final size:178
Alignment explanation
Indices: 75908316--75908641 Score: 539
Period size: 177 Copynumber: 1.8 Consensus size: 178
75908306 GTGGATTCCA
*
75908316 CACTTAGCAACCACTAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTT
1 CACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTT
* * * *
75908381 AGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGA
66 AGCAACCCCCTTCACATTTAAAATACGGTGGAATCAACACTTAGCAACCACCAATGAATAGGGGA
*
75908446 ATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAG
131 ATCAGCACATAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAG
* *
75908494 CACTTAGCAACCTCCAATGAAT-TGGGAATCAGCACACAGCAACCCCTT-GGGGAATCAGCACTT
1 CACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTT
* *
75908557 AGCAACCCCCTTTCACATTTAAAATATGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGG
66 AGCAACCCCC-TTCACATTTAAAATACGGTGGAATCAACACTTAGCAACCACCAATGAATAGGGG
75908622 AATCAGCACATAGCAACCCC
130 AATCAGCACATAGCAACCCC
75908642 TTTTATGCAA
Statistics
Matches: 137, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
176 25 0.18
177 92 0.67
178 20 0.15
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.19
Consensus pattern (178 bp):
CACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTT
AGCAACCCCCTTCACATTTAAAATACGGTGGAATCAACACTTAGCAACCACCAATGAATAGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAG
Found at i:75933416 original size:24 final size:23
Alignment explanation
Indices: 75933375--75933419 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
75933365 CCTACCCAAG
* *
75933375 CTCACCACCTTTTGTCTCCATCA
1 CTCACCACCTTATCTCTCCATCA
75933398 CTCACCTACCTTATCTCTCCAT
1 CTCACC-ACCTTATCTCTCCAT
75933420 GTAGGAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.18, C:0.44, G:0.02, T:0.36
Consensus pattern (23 bp):
CTCACCACCTTATCTCTCCATCA
Found at i:75946158 original size:28 final size:29
Alignment explanation
Indices: 75946126--75946181 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
75946116 TAACATTGGC
*
75946126 ACAAAGTGCCTGCTACTAAAA-CACCAGT
1 ACAAAGTACCTGCTACTAAAATCACCAGT
75946154 ACAAAGTACCTGCTACTAAAATCACCAG
1 ACAAAGTACCTGCTACTAAAATCACCAG
75946182 AATGTAACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.18
Consensus pattern (29 bp):
ACAAAGTACCTGCTACTAAAATCACCAGT
Found at i:75984707 original size:7 final size:7
Alignment explanation
Indices: 75984695--75984763 Score: 129
Period size: 7 Copynumber: 9.9 Consensus size: 7
75984685 CTTTCATTCT
75984695 TTATTTC
1 TTATTTC
75984702 TTATTTC
1 TTATTTC
75984709 TTATTTC
1 TTATTTC
75984716 TTATTTC
1 TTATTTC
75984723 TTATTTC
1 TTATTTC
75984730 TTATTTC
1 TTATTTC
75984737 TTATTTC
1 TTATTTC
75984744 TTATTTC
1 TTATTTC
75984751 TTATTTC
1 TTATTTC
*
75984758 GTATTT
1 TTATTT
75984764 TCATTAGTTA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 61 1.00
ACGTcount: A:0.14, C:0.13, G:0.01, T:0.71
Consensus pattern (7 bp):
TTATTTC
Found at i:75989360 original size:25 final size:25
Alignment explanation
Indices: 75989332--75989385 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
75989322 TGTAGTGGCA
*
75989332 AGGTGGCGACATAGGTGTGACAAGG
1 AGGTGGCGACACAGGTGTGACAAGG
* **
75989357 AGGTGGCGTCACAGGTGTGGTAAGG
1 AGGTGGCGACACAGGTGTGACAAGG
75989382 AGGT
1 AGGT
75989386 CAGAGGTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.11, G:0.46, T:0.19
Consensus pattern (25 bp):
AGGTGGCGACACAGGTGTGACAAGG
Found at i:75989771 original size:15 final size:15
Alignment explanation
Indices: 75989747--75989776 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75989737 TTTTTCCAAA
*
75989747 ATCGATCAATACCCC
1 ATCGAGCAATACCCC
75989762 ATCGAGCAATACCCC
1 ATCGAGCAATACCCC
75989777 TTTTCTCTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.40, G:0.10, T:0.17
Consensus pattern (15 bp):
ATCGAGCAATACCCC
Found at i:75990964 original size:27 final size:27
Alignment explanation
Indices: 75990877--75990955 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
75990867 AAAAAAACCA
*
75990877 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCTCCATAGGGTAAAATGACCG
* *
75990904 AAATACTTCCATAGGGTAAAATAACCG
1 AAATACCTCCATAGGGTAAAATGACCG
75990931 AAATACCTCCATAGGGTAAAATGAC
1 AAATACCTCCATAGGGTAAAATGAC
75990956 TGTTATACCC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATACCTCCATAGGGTAAAATGACCG
Found at i:75996921 original size:27 final size:27
Alignment explanation
Indices: 75996891--75996950 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
75996881 AAAAAGTTGT
75996891 TAAAATAACCAAAAT-ACCCCTATAGGG
1 TAAAATAACCAAAATAACCCC-ATAGGG
* * *
75996918 TAAAATGACCGAAATAACTCCATAGGG
1 TAAAATAACCAAAATAACCCCATAGGG
75996945 TAAAAT
1 TAAAAT
75996951 GACTGTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.20
Consensus pattern (27 bp):
TAAAATAACCAAAATAACCCCATAGGG
Found at i:76000569 original size:48 final size:48
Alignment explanation
Indices: 76000498--76000595 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
76000488 AATCCCCCAT
76000498 TTTATTTTTCTGACTTATTCCCCTTATCTTCTTTAGCTCCATCTTCAC
1 TTTATTTTTCTGACTTATTCCCCTTATCTTCTTTAGCTCCATCTTCAC
*
76000546 TTTATTTTTCTGACTTATTCCCCTTGTCTTCTTTAGCTCCATCTTCAC
1 TTTATTTTTCTGACTTATTCCCCTTATCTTCTTTAGCTCCATCTTCAC
76000594 TT
1 TT
76000596 GCATCGTCAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.13, C:0.29, G:0.05, T:0.53
Consensus pattern (48 bp):
TTTATTTTTCTGACTTATTCCCCTTATCTTCTTTAGCTCCATCTTCAC
Found at i:76004301 original size:652 final size:652
Alignment explanation
Indices: 76003058--76004369 Score: 2090
Period size: 652 Copynumber: 2.0 Consensus size: 652
76003048 ATTACAGTAT
* * * * *
76003058 CAATATTCAATGCAGTAACAGATATACAGTTTCAAATCCTACCCAGCCATCCTCTACACTCCAAT
1 CAATATTCAACGCAGTAAAAGATATACAGTTTCAAATACTACCCAGCCAGCCTCTACACTCCAAC
* * * *
76003123 TCCGTCCAACCCTACACTCCATGTGAGAATATAATCAACCCACCTATCCCTACACTCCAGAAAGT
66 TCCGTCCAACCCTACACTCCATGTGAGAAAATAATCAACACACCTATCCCCACACTCCAGAAAGC
* * * * * *
76003188 ACTGAATGCGGCATTAAACAGTAGTTCGCAGCAGGGCTGTCAGTAACTTAGGCTTGAGGCCTTTC
131 ACCGAATGCGACACTAAACAGTAGTTCGCAGCAGAGCTGCCAGTAACTTAGGCTCGAGGCCTTTC
76003253 AGTACACTTCCTCCGAACATTATAATTCCCCAAACCCAATGTAATGCAATATACAGATATGACAT
196 AGTACACTTCCTCCGAACATTATAATTCCCCAAACCCAATGTAATGCAATATACAGATATGACAT
*
76003318 GCTGTAACATAATATCATGCATGTAAATAGAGCATACAGTATCAAATCATTGCGACATCATCAGA
261 GCTGTAACATAATATCATGCATGTAAACAGAGCATACAGTATCAAATCATTGCGACATCATCAGA
* *
76003383 CTTAATCATATCACTCATACAGTCATTTCAGTCAATTAGGGGTCAAGGTAAACTTGCCATCCGTA
326 CTTAATCATATCACTCATACAGTCATTTCAGTCAATTAGGCGTCAAGGTAAACTTGCCATCCCTA
* * * * *
76003448 CAATAGGTTCAAAGTTGACTTGGCCGACCCGTGCAACCTTATCAGTGAAATAGTGAAAATGGGCC
391 CAATAGGTTCAAAGTCGACTTGGCCGACCAGTGCAACCTTATCAATCAAACAGTGAAAATGGGCC
* *
76003513 TACGAGCCCAAAAAGTTCACCCATGTGGGCCCATACGCCCGTGTGGCCCACATGGCCCAAACTGA
456 GACGAGCCCAAAAAGTTCACCCATGTGGGCCCACACGCCCGTGTGGCCCACATGGCCCAAACTGA
* *
76003578 CCCTGGCCTCGTGATCCATTTTAGTGTAACCCATGCTAGATAATTATTCATATGTGTTTGCCCTT
521 CCCTGGCCTCATGATCCATTTTAGTGTAACCCATGCAAGATAATTATTCATATGTGTTTGCCCTT
* * * *
76003643 TTTACTTATAATCCTTCCTAGTTGTCTACTTGAGTCACTGTTACTAAATTATTTGTATCTTAAGC
586 TTTACTTATAATCCTTCCAAGTTATCTACTTCAGTCACTATTACTAAATTATTTGTATCTTAAGC
76003708 TA
651 TA
* *
76003710 CAATATTCAACGCCGTAAAAGATATACAGTTTCAAGTACTACCCAGCCAGCCTCTACACTCCAAC
1 CAATATTCAACGCAGTAAAAGATATACAGTTTCAAATACTACCCAGCCAGCCTCTACACTCCAAC
* *
76003775 TCTGTCCAACCCTACACTCCATGTGGGAAAATAATCAACACACCTATCCCCACACTCCAGAAAGC
66 TCCGTCCAACCCTACACTCCATGTGAGAAAATAATCAACACACCTATCCCCACACTCCAGAAAGC
* * *
76003840 ACCGAATGTGACACTAAACAGTGGTTCGCAGCAGAGCTGCCAGTAGCTTAGGCTCGAGGCCTTTC
131 ACCGAATGCGACACTAAACAGTAGTTCGCAGCAGAGCTGCCAGTAACTTAGGCTCGAGGCCTTTC
*
76003905 AGTTCACTTCCTCCGAACATTATAATTCCCCAAACCCAATGTAATGCAATATAC-GAATATGACA
196 AGTACACTTCCTCCGAACATTATAATTCCCCAAACCCAATGTAATGCAATATACAG-ATATGACA
* * *
76003969 TGTTGTAACATAATATCATGCATGTAAACATAGCATACAGTATCAAATCATTGGGACATCATC-G
260 TGCTGTAACATAATATCATGCATGTAAACAGAGCATACAGTATCAAATCATTGCGACATCATCAG
* * *
76004033 AACTTAATCATATCAGTCATACAGTCATTTCAGTCAATTAGGCGTCTAGGTAAACTTGCCGTCCC
325 -ACTTAATCATATCACTCATACAGTCATTTCAGTCAATTAGGCGTCAAGGTAAACTTGCCATCCC
* *
76004098 TACAGTAGGTTCAAAGTCGACTTGGCTGACCAGTGCAACCTTATCAATCAAACAGTGAAAATGGG
389 TACAATAGGTTCAAAGTCGACTTGGCCGACCAGTGCAACCTTATCAATCAAACAGTGAAAATGGG
* *
76004163 CCGACGGGCCCAAAAAGTTCACCCATGTGGGCCCACACGCCCGTGTGGCCCACATGGCCCAAATT
454 CCGACGAGCCCAAAAAGTTCACCCATGTGGGCCCACACGCCCGTGTGGCCCACATGGCCCAAACT
**
76004228 GA-CCTCGGCCTCATGATCCATTTTAGTGTAACCCATGCAAGATAATTATTCATATGTGTTTTTC
519 GACCCT-GGCCTCATGATCCATTTTAGTGTAACCCATGCAAGATAATTATTCATATGTGTTTGCC
* *
76004292 CTTTTTACTTATAATCCTTCCAAGTTATCTACTTCCGTCACTATTACTAAATTATTTGTATCTTC
583 CTTTTTACTTATAATCCTTCCAAGTTATCTACTTCAGTCACTATTACTAAATTATTTGTATCTTA
76004357 AGCTA
648 AGCTA
*
76004362 CAAAATTC
1 CAATATTC
76004370 TGAATTAAGG
Statistics
Matches: 603, Mismatches: 54, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
651 5 0.01
652 598 0.99
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (652 bp):
CAATATTCAACGCAGTAAAAGATATACAGTTTCAAATACTACCCAGCCAGCCTCTACACTCCAAC
TCCGTCCAACCCTACACTCCATGTGAGAAAATAATCAACACACCTATCCCCACACTCCAGAAAGC
ACCGAATGCGACACTAAACAGTAGTTCGCAGCAGAGCTGCCAGTAACTTAGGCTCGAGGCCTTTC
AGTACACTTCCTCCGAACATTATAATTCCCCAAACCCAATGTAATGCAATATACAGATATGACAT
GCTGTAACATAATATCATGCATGTAAACAGAGCATACAGTATCAAATCATTGCGACATCATCAGA
CTTAATCATATCACTCATACAGTCATTTCAGTCAATTAGGCGTCAAGGTAAACTTGCCATCCCTA
CAATAGGTTCAAAGTCGACTTGGCCGACCAGTGCAACCTTATCAATCAAACAGTGAAAATGGGCC
GACGAGCCCAAAAAGTTCACCCATGTGGGCCCACACGCCCGTGTGGCCCACATGGCCCAAACTGA
CCCTGGCCTCATGATCCATTTTAGTGTAACCCATGCAAGATAATTATTCATATGTGTTTGCCCTT
TTTACTTATAATCCTTCCAAGTTATCTACTTCAGTCACTATTACTAAATTATTTGTATCTTAAGC
TA
Found at i:76006288 original size:27 final size:27
Alignment explanation
Indices: 76006258--76006435 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76006248 ATATTGAGTC
* * *
76006258 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
76006285 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
76006312 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
76006340 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
76006367 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
76006394 CGCACACTTAGTGCAACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
76006421 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76006436 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:76006397 original size:82 final size:81
Alignment explanation
Indices: 76006279--76006434 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76006269 TGCTATATAA
* *
76006279 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-AACTCGCA
76006344 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76006361 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAACTCGCA
76006425 CACTTAGTGC
65 CACTTAGTGC
76006435 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 19 0.28
82 48 0.72
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:76011051 original size:19 final size:20
Alignment explanation
Indices: 76011027--76011064 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
76011017 GGTACCACCA
76011027 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
76011046 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
76011065 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:76011352 original size:46 final size:45
Alignment explanation
Indices: 76011285--76011457 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 45
76011275 TGTAACCCAC
* * *
76011285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGTAT
*
76011331 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-T
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG--GCTTAGTAT
* ** ** * * *
76011377 ACATTTCACAAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCA-TAAATGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGTAT
*
76011424 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTC
76011458 AGATGCTCAA
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.63
47 35 0.34
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGCTTAGTAT
Done.