Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 231 of 310
Found at i:76011404 original size:93 final size:93
Alignment explanation
Indices: 76011294--76011463 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
76011284 CCCATAAGTG
* * *
76011294 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAATGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
*
76011359 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCAGATGCCTAGTTACATTTCACA
* * *
76011387 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
76011452 GAGTTCAGATGC
66 GAGTTCAGATGC
76011464 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATTTCACA
Found at i:76011917 original size:30 final size:30
Alignment explanation
Indices: 76011883--76011942 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
76011873 ATTTAATACG
76011883 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
76011913 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
76011943 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:76015291 original size:39 final size:40
Alignment explanation
Indices: 76015246--76015430 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
76015236 GCTCCTCGTT
* * *
76015246 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
76015286 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
76015325 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
76015365 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
76015406 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
76015431 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:76026077 original size:20 final size:19
Alignment explanation
Indices: 76026052--76026124 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
76026042 TGATGAACCT
76026052 TTCCATTTACTTACTTATCA
1 TTCCATTTACTTACTT-TCA
*
76026072 TTCCATTTGCTTACTTTCCA
1 TTCCATTTACTTACTTT-CA
76026092 TTTCC-TTTACTTACTTTCAA
1 -TTCCATTTACTTACTTTC-A
*
76026112 TTCTATTTACTTA
1 TTCCATTTACTTA
76026125 GCATAAGCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
19 5 0.11
20 37 0.80
21 4 0.09
ACGTcount: A:0.21, C:0.25, G:0.01, T:0.53
Consensus pattern (19 bp):
TTCCATTTACTTACTTTCA
Found at i:76027589 original size:30 final size:30
Alignment explanation
Indices: 76027553--76027615 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
76027543 TGCCCGACCA
76027553 TGTACCTCTCAAAATGGCCTCACACGCCCG
1 TGTACCTCTCAAAATGGCCTCACACGCCCG
** * *
76027583 TGTACCTCTTGAAATGGCCTCACATGCTCG
1 TGTACCTCTCAAAATGGCCTCACACGCCCG
76027613 TGT
1 TGT
76027616 GCCAGGCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (30 bp):
TGTACCTCTCAAAATGGCCTCACACGCCCG
Found at i:76043416 original size:27 final size:27
Alignment explanation
Indices: 76043377--76043570 Score: 255
Period size: 27 Copynumber: 7.2 Consensus size: 27
76043367 AGAGGTCGAT
*
76043377 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
76043404 AAATGATCGAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
76043431 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
76043458 AAATGACCG-AATACCCCTACAGGTTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
76043484 AAATGACTGAATTACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
76043511 AAATGATCGAAGTACCCCCACAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
76043538 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
76043565 AAATGA
1 AAATGA
76043571 TTGTTATACC
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 22 0.15
27 120 0.85
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.18
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:76059919 original size:41 final size:40
Alignment explanation
Indices: 76059833--76060056 Score: 210
Period size: 41 Copynumber: 5.6 Consensus size: 40
76059823 CTTGCACAAG
* * *
76059833 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAC
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAA
* *
76059873 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGATCTTAGCCCGGATATAGTCA-CTAGCACAAAA
* * *
76059914 GCCTTCGGGA-CTTAGCCCGGATATCATTCGAATA--AC--CA
1 GCCTTC-GGATCTTAGCCCGGATAT-AGTC-ACTAGCACAAAA
* * *
76059952 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACGAAT
1 GCCTTCGGATCTTAGCCCGGATATAGTC-ACTAGCACAAAA
* * *
76059992 GCCTTCGGATCTTAGTCTGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGATCTTAGCCCGGATATAGTCA-CTAGCACAAAA
76060033 GCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTC-GGATCTTAGCCCGGATAT
76060057 CATTCGAATA
Statistics
Matches: 147, Mismatches: 25, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
36 4 0.03
37 3 0.02
38 23 0.16
40 51 0.35
41 54 0.37
42 11 0.07
43 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAA
Found at i:76060008 original size:119 final size:119
Alignment explanation
Indices: 76059833--76060070 Score: 424
Period size: 119 Copynumber: 2.0 Consensus size: 119
76059823 CTTGCACAAG
*
76059833 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAACGCCTTCGGATCTTAGTCCGGTTATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAACGCCTTCGGATCTTAGTCCGGTTATA
76059898 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATCATTCGAATAACCA
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATCATTCGAATAACCA
* * *
76059952 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACGAATGCCTTCGGATCTTAGTCTGGTTAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAACGCCTTCGGATCTTAGTCCGGTTAT
76060016 AGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATCATTCGAATAACCA
65 AGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATCATTCGAATAACCA
76060071 TGCACATATA
Statistics
Matches: 114, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
118 1 0.01
119 113 0.99
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAACGCCTTCGGATCTTAGTCCGGTTATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATCATTCGAATAACCA
Found at i:76060052 original size:81 final size:78
Alignment explanation
Indices: 76059797--76060056 Score: 233
Period size: 81 Copynumber: 3.3 Consensus size: 78
76059787 CTCAAGTAAT
* * * * * *
76059797 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAAGCCTTCGGATCTTAGCCCGG-TATAGTC
*
76059861 ACTAGCATAAACGC
65 ACTAGCATAAAAGC
* * *
76059875 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGA-CTTAGCCCGG-ATA
1 CTTCGGGA-CTTAGCCCGGATATAG-CAACTAGCAC-AAAGCCTTC-GGATCTTAGCCCGGTATA
* * * *
76059937 -TCATTCGAATAACCAGC
62 GTCACTAGCATAA-AAGC
* * * *
76059954 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACGAATGCCTTCGGATCTTAGTCTGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCAC-AAAGCCTTCGGATCTTAGCCCGG-TATAGT
*
76060019 CACCTAGCACAAAAGC
64 CA-CTAGCATAAAAGC
76060035 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
76060057 CATTCGAATA
Statistics
Matches: 143, Mismatches: 27, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
77 6 0.04
78 42 0.29
79 31 0.22
80 12 0.08
81 45 0.31
82 7 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAAGCCTTCGGATCTTAGCCCGGTATAGTCA
CTAGCATAAAAGC
Found at i:76067985 original size:40 final size:40
Alignment explanation
Indices: 76067929--76068833 Score: 1411
Period size: 40 Copynumber: 22.6 Consensus size: 40
76067919 CTTGCACAAG
* * * *
76067929 GCCTTCGGGTCATAGCCCGAATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76067969 GCCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068009 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
*
76068049 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068089 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068129 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068169 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068209 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068249 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068289 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068329 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068369 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068409 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068449 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068489 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068529 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068569 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068609 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76068649 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
76068689 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76068729 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
76068769 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
76068810 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
76068834 CATTCGAATA
Statistics
Matches: 787, Mismatches: 71, Indels: 13
0.90 0.08 0.01
Matches are distributed among these distances:
39 4 0.01
40 752 0.96
41 28 0.04
42 3 0.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76068049 original size:80 final size:80
Alignment explanation
Indices: 76067929--76068833 Score: 1627
Period size: 80 Copynumber: 11.3 Consensus size: 80
76067919 CTTGCACAAG
* * *
76067929 GCCTTCGGGTCATAGCCCGAATATAGTCACTAGCATAAATGCCTTCAGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
*
76067994 GTCACTAGCACAAAT
66 GTCGCTAGCACAAAT
* *
76068009 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
76068073 AGTCGCTAGCACAAAT
65 AGTCGCTAGCACAAAT
76068089 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068154 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068169 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068234 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068249 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068314 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068329 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068394 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068409 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068474 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068489 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068554 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068569 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068634 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
76068649 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
76068714 GTCGCTAGCACAAAT
66 GTCGCTAGCACAAAT
* ** * *
76068729 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATA
* *
76068792 TAGTCACCTAGCACAAAA
64 TAGTC-GCTAGCACAAAT
*
76068810 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
76068834 CATTCGAATA
Statistics
Matches: 804, Mismatches: 16, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
79 5 0.01
80 765 0.95
81 34 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
GTCGCTAGCACAAAT
Found at i:76070401 original size:103 final size:103
Alignment explanation
Indices: 76070222--76070428 Score: 405
Period size: 103 Copynumber: 2.0 Consensus size: 103
76070212 ATGCCCCATA
*
76070222 TCATGGCCGGCCACTAGCTCAAATATTGGGCAATTTGACATGCAAACCCACCATTTCTATAACAT
1 TCATGGCCGGCCACTACCTCAAATATTGGGCAATTTGACATGCAAACCCACCATTTCTATAACAT
76070287 GCATTAATAGGCCACTTTACATTTGCCTAGCACATTTC
66 GCATTAATAGGCCACTTTACATTTGCCTAGCACATTTC
76070325 TCATGGCCGGCCACTACCTCAAATATTGGGCAATTTGACATGCAAACCCACCATTTCTATAACAT
1 TCATGGCCGGCCACTACCTCAAATATTGGGCAATTTGACATGCAAACCCACCATTTCTATAACAT
76070390 GCATTAATAGGCCACTTTACATTTGCCTAGCACATTTC
66 GCATTAATAGGCCACTTTACATTTGCCTAGCACATTTC
76070428 T
1 T
76070429 AAATTTTCTC
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (103 bp):
TCATGGCCGGCCACTACCTCAAATATTGGGCAATTTGACATGCAAACCCACCATTTCTATAACAT
GCATTAATAGGCCACTTTACATTTGCCTAGCACATTTC
Found at i:76071611 original size:13 final size:13
Alignment explanation
Indices: 76071593--76071638 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
76071583 GACACGCGAG
*
76071593 CGTGTGTCTATAC
1 CGTGTGTCTATAT
76071606 CGTGTGTCTATAT
1 CGTGTGTCTATAT
76071619 CGTGTGTCTATAT
1 CGTGTGTCTATAT
76071632 CGTGTGT
1 CGTGTGT
76071639 GACACACGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.43
Consensus pattern (13 bp):
CGTGTGTCTATAT
Found at i:76080412 original size:30 final size:30
Alignment explanation
Indices: 76080378--76080438 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76080368 TCCTTAACTC
*
76080378 AAACTTTTGCAAAATTACAATTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
76080408 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
76080438 A
1 A
76080439 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:76083717 original size:22 final size:26
Alignment explanation
Indices: 76083691--76083744 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 26
76083681 AGTATGTTTA
76083691 ATAAATATTTAATT-ATA-AA-TGT-
1 ATAAATATTTAATTGATATAATTGTG
*
76083713 ATAAATGTTTAATTGATATAATTGTG
1 ATAAATATTTAATTGATATAATTGTG
76083739 ATAAAT
1 ATAAAT
76083745 GTCTTATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 13 0.48
23 3 0.11
24 2 0.07
25 3 0.11
26 6 0.22
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.44
Consensus pattern (26 bp):
ATAAATATTTAATTGATATAATTGTG
Found at i:76087572 original size:44 final size:43
Alignment explanation
Indices: 76087493--76087602 Score: 125
Period size: 44 Copynumber: 2.5 Consensus size: 43
76087483 CCGATATGGG
* * *
76087493 TTATCGTGTAAGACCACGTCGGGGACGTTGGCATCG-ACTTATGAT
1 TTAT-GTGTAAGACCATGTCTGGGACGTTGACATCGTA-TT-TGAT
*
76087538 TTATGTGTAAGACCATGTCTGGGATGTTGACATCGTATTTGAT
1 TTATGTGTAAGACCATGTCTGGGACGTTGACATCGTATTTGAT
* *
76087581 TT-CGTGTAAGACCCTGTCTGGG
1 TTATGTGTAAGACCATGTCTGGG
76087603 TCAGTGGCAT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 18 0.31
43 6 0.10
44 29 0.50
45 5 0.09
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (43 bp):
TTATGTGTAAGACCATGTCTGGGACGTTGACATCGTATTTGAT
Found at i:76088325 original size:10 final size:9
Alignment explanation
Indices: 76088294--76088321 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
76088284 CTAAGAGAAA
76088294 TGGTAAGTT
1 TGGTAAGTT
76088303 TGGTAAGTT
1 TGGTAAGTT
76088312 TGGTAAGTT
1 TGGTAAGTT
76088321 T
1 T
76088322 TGGTGTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (9 bp):
TGGTAAGTT
Found at i:76090195 original size:40 final size:39
Alignment explanation
Indices: 76090151--76090372 Score: 345
Period size: 40 Copynumber: 5.6 Consensus size: 39
76090141 GCTACTTTCT
* **
76090151 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCA
76090191 CAAATGCCTTCGGGACTTAGCCCGGACATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCA
*
76090231 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCA
76090271 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCA
* * *
76090311 CAATTGCCTTCGGGACTTAGCCCGGAATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCA
76090350 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
76090373 CGTTATCATC
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 33 0.19
40 138 0.81
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCA
Found at i:76095832 original size:43 final size:43
Alignment explanation
Indices: 76095732--76095839 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
76095722 GATTAATGAA
* * *
76095732 ATGTGATTACGTGTAAGACCATGTCTGGGACGTTGGCATCATT
1 ATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCACT
* * *
76095775 ATGAGATTAT-GTGTAAAACCATGTCTGGGACATTGGCATCGCT
1 ATGTGATT-TCGTGTAAGACCATGTCTGGGACATTGGCATCACT
*
76095818 ATTTGATTTCGTGTAAGACCAT
1 ATGTGATTTCGTGTAAGACCAT
76095840 AGATGGGTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
ATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCACT
Found at i:76115348 original size:27 final size:27
Alignment explanation
Indices: 76115304--76115406 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
76115294 GACCCCAATT
*
76115304 TGGTGAAATGACTATTTTGCCCTTATA
1 TGGTAAAATGACTATTTTGCCCTTATA
* * *
76115331 AGGTAAAATGACTGTTTTGCCCTTATG
1 TGGTAAAATGACTATTTTGCCCTTATA
*** * *
76115358 TGGTAAAATGACTAAAATGCCCCTACA
1 TGGTAAAATGACTATTTTGCCCTTATA
* *
76115385 TGGTAAATTGACTGTTTTGCCC
1 TGGTAAAATGACTATTTTGCCC
76115407 CTATGTGAGG
Statistics
Matches: 59, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (27 bp):
TGGTAAAATGACTATTTTGCCCTTATA
Found at i:76115779 original size:18 final size:18
Alignment explanation
Indices: 76115756--76115795 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
76115746 GGACTTGCAT
* *
76115756 ACTGTTTACTATTATTGC
1 ACTGTTTACCATTACTGC
76115774 ACTGTTTACCATTACTGC
1 ACTGTTTACCATTACTGC
76115792 ACTG
1 ACTG
76115796 GGCTAGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (18 bp):
ACTGTTTACCATTACTGC
Found at i:76131557 original size:93 final size:93
Alignment explanation
Indices: 76131448--76131618 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
76131438 GCCCCTAAGT
* ** *
76131448 GAACTCGGACTCAACTCAATGAGTTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACAAGTTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76131512 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
76131541 GAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76131606 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76131619 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:76131614 original size:46 final size:47
Alignment explanation
Indices: 76131443--76131615 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
76131433 AACCCGCCCC
* *
76131443 TAAGTGAACTCGGACTCAACTCAATGAGTTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* *
76131489 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCA
* * * *
76131537 TCA-CGAACTCAGACTCAACTCAACAAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
76131582 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76131616 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.55
47 29 0.28
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:76144045 original size:22 final size:22
Alignment explanation
Indices: 76144020--76144063 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76144010 AATTATTAAC
* *
76144020 ATAATGAATTTTAATTAATTTT
1 ATAATAAAATTTAATTAATTTT
*
76144042 ATAATAAAATTTGATTAATTTT
1 ATAATAAAATTTAATTAATTTT
76144064 GATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAAATTTAATTAATTTT
Found at i:76146488 original size:130 final size:130
Alignment explanation
Indices: 76146326--76147154 Score: 1633
Period size: 130 Copynumber: 6.4 Consensus size: 130
76146316 TTATGAGGTA
*
76146326 GCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
76146391 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
66 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
76146456 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
76146521 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
66 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
76146586 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
76146651 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
66 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
76146716 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
76146781 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
66 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
76146846 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
76146911 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
66 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
76146976 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
76147041 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
66 CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
76147106 GCTAGGTCACATGGGTGATACTATGTGTACACCATGT-GTACAAGAGAGC
1 GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
76147155 CAAAATTATG
Statistics
Matches: 697, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
129 1 0.00
130 696 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (130 bp):
GCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAGATGTAG
CTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAAAGCTACGAGATAAAGTG
Found at i:76148635 original size:21 final size:20
Alignment explanation
Indices: 76148590--76148635 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
76148580 TTGTTGGAAT
76148590 GGTTG-ATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
76148609 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
76148630 GGTTGA
1 GGTTGA
76148636 TTGCATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.18
20 8 0.36
21 10 0.45
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:76150924 original size:23 final size:24
Alignment explanation
Indices: 76150879--76150958 Score: 92
Period size: 23 Copynumber: 3.3 Consensus size: 24
76150869 AAGCTCCTCC
*
76150879 TGAGCTGATGGACAGTAAGCTCTAT
1 TGAGCTGA-GAACAGTAAGCTCTAT
* * *
76150904 TGAGCTGA-AATAGTAAACTCTAA
1 TGAGCTGAGAACAGTAAGCTCTAT
76150927 TGAGCTGAGAACAGTAAGCTCT-T
1 TGAGCTGAGAACAGTAAGCTCTAT
76150950 ATGAGCTGA
1 -TGAGCTGA
76150959 TATATCGGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
23 19 0.41
24 19 0.41
25 8 0.17
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (24 bp):
TGAGCTGAGAACAGTAAGCTCTAT
Found at i:76150948 original size:24 final size:24
Alignment explanation
Indices: 76150879--76150958 Score: 99
Period size: 24 Copynumber: 3.3 Consensus size: 24
76150869 AAGCTCCTCC
* *
76150879 TGAGCTGATGGACAGTAAGCTCTAT
1 TGAGCTGA-GAACAGTAAGCTCTAA
* *
76150904 TGAGCTGA-AATAGTAAACTCTAA
1 TGAGCTGAGAACAGTAAGCTCTAA
*
76150927 TGAGCTGAGAACAGTAAGCTCTTA
1 TGAGCTGAGAACAGTAAGCTCTAA
76150951 TGAGCTGA
1 TGAGCTGA
76150959 TATATCGGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
23 19 0.40
24 20 0.43
25 8 0.17
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (24 bp):
TGAGCTGAGAACAGTAAGCTCTAA
Found at i:76154420 original size:39 final size:39
Alignment explanation
Indices: 76154365--76155272 Score: 1656
Period size: 39 Copynumber: 23.3 Consensus size: 39
76154355 GGACTTTATG
* * * * * *
76154365 CCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTTAG
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGC-TTAA
76154404 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154443 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154482 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154521 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154560 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154599 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154638 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154677 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154716 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154755 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154794 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154833 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154872 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154911 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154950 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76154989 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76155028 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76155067 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76155106 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
* * *
76155145 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
* * *
76155184 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
* * * *
76155223 CCCGGATATAACACCAGCACGAATGCCTTCAGGACTTAG
1 CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
76155262 CCCGGATATAA
1 CCCGGATATAA
76155273 TTCTCCATTA
Statistics
Matches: 858, Mismatches: 10, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
39 848 0.99
40 10 0.01
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
CCCGGATATAACACCAGCACGAATGTCTTCGGGGCTTAA
Found at i:76160517 original size:22 final size:22
Alignment explanation
Indices: 76160492--76160535 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76160482 AATTATTAAC
* *
76160492 ATAATGAATTTTAATTAATTTT
1 ATAATAAAATTTAATTAATTTT
*
76160514 ATAATAAAATTTGATTAATTTT
1 ATAATAAAATTTAATTAATTTT
76160536 GATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAAATTTAATTAATTTT
Found at i:76162841 original size:68 final size:64
Alignment explanation
Indices: 76162755--76162976 Score: 223
Period size: 67 Copynumber: 3.4 Consensus size: 64
76162745 TAATACGGGA
* *
76162755 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCATGGGTGATACT
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTCGCATGGGTGATACT
76162820 ATG
62 ATG
* * * * * *
76162823 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCCAGG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACTA--
76162887 TG
63 TG
* * ** * * *
76162889 AAGGACACCATGTAAACAAGAAAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATG
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACTATG
76162953 TGTACACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
76162977 CAAAATTATG
Statistics
Matches: 125, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
63 19 0.15
64 25 0.20
65 2 0.02
66 23 0.18
67 28 0.22
68 27 0.22
69 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (64 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACTATG
Found at i:76164457 original size:21 final size:20
Alignment explanation
Indices: 76164412--76164457 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
76164402 TTGTTGGAAT
76164412 GGTTG-ATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
76164431 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
76164452 GGTTGA
1 GGTTGA
76164458 TTGCATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.18
20 8 0.36
21 10 0.45
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:76166746 original size:23 final size:24
Alignment explanation
Indices: 76166701--76166780 Score: 92
Period size: 23 Copynumber: 3.3 Consensus size: 24
76166691 AAGCTCCTCC
*
76166701 TGAGCTGATGGACAGTAAGCTCTAT
1 TGAGCTGA-GAACAGTAAGCTCTAT
* * *
76166726 TGAGCTGA-AATAGTAAACTCTAA
1 TGAGCTGAGAACAGTAAGCTCTAT
76166749 TGAGCTGAGAACAGTAAGCTCT-T
1 TGAGCTGAGAACAGTAAGCTCTAT
76166772 ATGAGCTGA
1 -TGAGCTGA
76166781 TATATCGGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
23 19 0.41
24 19 0.41
25 8 0.17
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (24 bp):
TGAGCTGAGAACAGTAAGCTCTAT
Found at i:76166770 original size:24 final size:24
Alignment explanation
Indices: 76166701--76166780 Score: 99
Period size: 24 Copynumber: 3.3 Consensus size: 24
76166691 AAGCTCCTCC
* *
76166701 TGAGCTGATGGACAGTAAGCTCTAT
1 TGAGCTGA-GAACAGTAAGCTCTAA
* *
76166726 TGAGCTGA-AATAGTAAACTCTAA
1 TGAGCTGAGAACAGTAAGCTCTAA
*
76166749 TGAGCTGAGAACAGTAAGCTCTTA
1 TGAGCTGAGAACAGTAAGCTCTAA
76166773 TGAGCTGA
1 TGAGCTGA
76166781 TATATCGGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
23 19 0.40
24 20 0.43
25 8 0.17
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (24 bp):
TGAGCTGAGAACAGTAAGCTCTAA
Found at i:76170242 original size:39 final size:39
Alignment explanation
Indices: 76170175--76170391 Score: 330
Period size: 39 Copynumber: 5.5 Consensus size: 39
76170165 ACAAAGCATG
* * *
76170175 CGGGACTTTATGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TTA-GCCCGGATATAACACCAGCACGAATGCCTT
*
76170215 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGTCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
76170255 CGGGGCTTAACCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
76170294 CGGGACTTAGCCCGGATATAACA-CAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
76170332 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
76170371 CAGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
76170392 TTCTCCATTA
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
38 38 0.23
39 107 0.65
40 20 0.12
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:76170351 original size:116 final size:119
Alignment explanation
Indices: 76170175--76170391 Score: 334
Period size: 116 Copynumber: 1.8 Consensus size: 119
76170165 ACAAAGCATG
*
76170175 CGGGACTTTATGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
1 CGGGACTTTATGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
* * *
76170240 CAGCACGAATGTCTTCGGGGCTTAACCCGGATATAACACCAGCACGAATGCCTT
66 CAGCACGAATGCCTTCAGGACTTAACCCGGATATAACACCAGCACGAATGCCTT
* *
76170294 CGGGAC-TTA-GCCCGGATATAACA-CAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
1 CGGGACTTTATGCCCGGATATAACACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACA
*
76170355 CCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAA
65 CCAGCACGAATGCCTTCAGGACTTAACCCGGATATAA
76170392 TTCTCCATTA
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
116 56 0.62
117 25 0.28
118 3 0.03
119 6 0.07
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (119 bp):
CGGGACTTTATGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
CAGCACGAATGCCTTCAGGACTTAACCCGGATATAACACCAGCACGAATGCCTT
Found at i:76170353 original size:77 final size:78
Alignment explanation
Indices: 76170175--76170391 Score: 330
Period size: 77 Copynumber: 2.8 Consensus size: 78
76170165 ACAAAGCATG
* * *
76170175 CGGGACTTTATGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACA
1 CGGGAC-TTA-GCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
*
76170239 CCAGCACGAATGTCTT
63 CCAGCACGAATGCCTT
* *
76170255 CGGGGCTTAACCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA-CA
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCA
76170319 GCACGAATGCCTT
66 GCACGAATGCCTT
*
76170332 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
76170392 TTCTCCATTA
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
77 71 0.56
78 36 0.28
79 15 0.12
80 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCA
GCACGAATGCCTT
Found at i:76170857 original size:110 final size:110
Alignment explanation
Indices: 76170724--76170943 Score: 413
Period size: 110 Copynumber: 2.0 Consensus size: 110
76170714 TGTGGATAGG
*
76170724 CTACTCGATTGCTTTATCCTTTCCCTTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
*
76170789 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAAAAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
*
76170834 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
76170899 TAAAAAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAAAAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
76170944 AATAGTCACA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.47
Consensus pattern (110 bp):
CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
TAAAAAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:76178296 original size:18 final size:18
Alignment explanation
Indices: 76178243--76178310 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
76178233 AAAGATCGAC
*
76178243 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-TTGAT
* *
76178262 TGTTACTGTATATTTGAT
1 TGTTACTGAATAATTGAT
* *
76178280 TTTTACTGAATAATTGAC
1 TGTTACTGAATAATTGAT
*
76178298 TGTTACTGGATAA
1 TGTTACTGAATAA
76178311 CCGATCAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
18 29 0.73
19 11 0.28
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (18 bp):
TGTTACTGAATAATTGAT
Found at i:76180377 original size:37 final size:37
Alignment explanation
Indices: 76180336--76180474 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
76180326 TTTGAGTACT
76180336 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
76180373 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
76180410 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
76180447 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
76180475 TAGCTTCAGC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:76180546 original size:45 final size:46
Alignment explanation
Indices: 76180437--76180560 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
76180427 GTGATAAGTG
* *
76180437 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
76180483 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
76180528 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
76180561 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:76182735 original size:16 final size:17
Alignment explanation
Indices: 76182701--76182739 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
76182691 AAAACTAAGA
*
76182701 TTTTTAGAACATTTATT
1 TTTTTACAACATTTATT
76182718 TTTTTACAACATTCT-TT
1 TTTTTACAACATT-TATT
76182735 TTTTT
1 TTTTT
76182740 CCCTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTACAACATTTATT
Found at i:76183514 original size:31 final size:32
Alignment explanation
Indices: 76183479--76183547 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
76183469 TGGTGTGGAG
76183479 TAAAATTTCA-AAATTAAAAAAGTAAAAGGAC
1 TAAAATTTCACAAATTAAAAAAGTAAAAGGAC
* * * * *
76183510 TAAAA-TTGACGAATTCAAAAAGTACATGGAC
1 TAAAATTTCACAAATTAAAAAAGTAAAAGGAC
76183541 TAAAATT
1 TAAAATT
76183548 AATAATCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 3 0.10
31 27 0.87
32 1 0.03
ACGTcount: A:0.55, C:0.09, G:0.12, T:0.25
Consensus pattern (32 bp):
TAAAATTTCACAAATTAAAAAAGTAAAAGGAC
Found at i:76183748 original size:40 final size:40
Alignment explanation
Indices: 76183668--76183760 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 40
76183658 GCACGTGAAC
* ** **
76183668 TTGAAATATTGATTTTTACTAATTTGCTGGAAATAAATTG
1 TTGAAATATTGATTTTAACTAATTTAATACAAATAAATTG
* * *
76183708 TTGAATTATTGATTTTAACTAATTTAATACATATACATTG
1 TTGAAATATTGATTTTAACTAATTTAATACAAATAAATTG
*
76183748 TTAAAACTATTGA
1 TTGAAA-TATTGA
76183761 ATTTCAAGTC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
40 36 0.86
41 6 0.14
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (40 bp):
TTGAAATATTGATTTTAACTAATTTAATACAAATAAATTG
Found at i:76184219 original size:85 final size:85
Alignment explanation
Indices: 76184112--76184499 Score: 776
Period size: 85 Copynumber: 4.6 Consensus size: 85
76184102 TTCTTTGAGG
76184112 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
1 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
76184177 ATATTAGGGAAAAGAAAAAA
66 ATATTAGGGAAAAGAAAAAA
76184197 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
1 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
76184262 ATATTAGGGAAAAGAAAAAA
66 ATATTAGGGAAAAGAAAAAA
76184282 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
1 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
76184347 ATATTAGGGAAAAGAAAAAA
66 ATATTAGGGAAAAGAAAAAA
76184367 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
1 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
76184432 ATATTAGGGAAAAGAAAAAA
66 ATATTAGGGAAAAGAAAAAA
76184452 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATAT
1 ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATAT
76184500 GACATACAGC
Statistics
Matches: 303, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 303 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (85 bp):
ACACATCATTAATATATTCTATGAAAAATATGCTCTCGTTTCTAATATCATTTAATATAGCTCAC
ATATTAGGGAAAAGAAAAAA
Found at i:76185546 original size:17 final size:17
Alignment explanation
Indices: 76185521--76185560 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
76185511 TAATTAATTA
*
76185521 TTTTTTTCGCTAACGTG
1 TTTTGTTCGCTAACGTG
76185538 TTTTGTTCGCTAACGTG
1 TTTTGTTCGCTAACGTG
76185555 TTTTGT
1 TTTTGT
76185561 CTAACAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.15, G:0.20, T:0.55
Consensus pattern (17 bp):
TTTTGTTCGCTAACGTG
Found at i:76186025 original size:76 final size:78
Alignment explanation
Indices: 76185945--76186152 Score: 249
Period size: 80 Copynumber: 2.7 Consensus size: 78
76185935 ATTCTCGCCG
* * * *
76185945 TTCAACGATTTTATTCCAAAATTGTCTTATTCCCAAAACGAGTAAGT-AAAAA-TCGTTTCGGAA
1 TTCAACGATTTTATTCCAAAATTGTTTTATTTCAAAAACGAGTAAATAAAAAATTCGTTTCGGAA
*
76186008 TTGATTCCCATCA
66 TTGATTCCCACCA
* * *
76186021 TTCAATGATTTTATTCCAAATTTGTTTTATTTTCAAAAACGAGTAAAATAAAAAATTTGTTTCGG
1 TTCAACGATTTTATTCCAAAATTGTTTTA-TTTCAAAAACGAGT-AAATAAAAAATTCGTTTCGG
* * *
76186086 GATTGATTCCCGCCG
64 AATTGATTCCCACCA
* * *
76186101 TTCAACGCTTTTATTCCAAAGTTGTTTTATTTAAAAAACGAGTAACATAAAA
1 TTCAACGATTTTATTCCAAAATTGTTTTATTTCAAAAACGAGTAA-ATAAAA
76186153 TGTGTTTCGG
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
76 26 0.23
77 12 0.11
78 5 0.04
79 24 0.21
80 45 0.40
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (78 bp):
TTCAACGATTTTATTCCAAAATTGTTTTATTTCAAAAACGAGTAAATAAAAAATTCGTTTCGGAA
TTGATTCCCACCA
Found at i:76186113 original size:80 final size:77
Alignment explanation
Indices: 76185908--76186167 Score: 299
Period size: 76 Copynumber: 3.4 Consensus size: 77
76185898 GGAAATTAAA
* * * * *
76185908 AGTAAAATAAAAAATGTTTTGGGACTGATTCTCGCCGTTCAACGATTTTATTCCAAAATTGTCTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTTTT
* *
76185973 ATTCCCAAAACG
66 ATTTCAAAAACG
* * * ** * * *
76185985 AGT-AAGTAAAAATCGTTTCGGAATTGATTCCCATCATTCAATGATTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTTTT
76186049 ATTTTCAAAAACG
66 A-TTTCAAAAACG
* *
76186062 AGTAAAATAAAAAATTTGTTTCGGGATTGATTCCCGCCGTTCAACGCTTTTATTCCAAAGTTGTT
1 AGTAAAAT-AAAAA-TTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTT
*
76186127 TTATTTAAAAAACG
64 TTATTTCAAAAACG
*
76186141 AGTAACAT-AAAATGTGTTTCGGGATTG
1 AGTAAAATAAAAAT-TGTTTCGGGATTG
76186168 CTTCTAGCCG
Statistics
Matches: 152, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
76 50 0.33
77 32 0.21
78 3 0.02
79 22 0.14
80 45 0.30
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (77 bp):
AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAAATTGTTTT
ATTTCAAAAACG
Found at i:76186191 original size:77 final size:79
Alignment explanation
Indices: 76185908--76186192 Score: 214
Period size: 77 Copynumber: 3.7 Consensus size: 79
76185898 GGAAATTAAA
* * *
76185908 AGTAAAATAAAAAATGT-TTT-GGGACTGATTCTC-GCCGTTCAACG-ATTTTATTCCAAAATTG
1 AGTAAAAT-AAAAATGTGTTTCGGGATTGATTC-CAGCCGTTAAACGCA-TTTATTCCAAAGTTG
* ***
76185969 TCTTA-TTCCCAAAACG
63 TTTTATTTTAAAAAACG
* * * * * * * *
76185985 AGT-AAGTAAAAAT-CGTTTCGGAATTGATTCCCA-TCATTCAATG-ATTTTATTCCAAATTTGT
1 AGTAAAATAAAAATGTGTTTCGGGATTGATT-CCAGCCGTTAAACGCA-TTTATTCCAAAGTTGT
*
76186046 TTTATTTTCAAAAACG
64 TTTATTTTAAAAAACG
* * * *
76186062 AGTAAAATAAAAAATTTGTTTCGGGATTGATTCCCGCCGTTCAACGCTTTTATTCCAAAGTTGTT
1 AGTAAAAT-AAAAATGTGTTTCGGGATTGATTCCAGCCGTTAAACGCATTTATTCCAAAGTTGTT
76186127 TTA-TTTAAAAAACG
65 TTATTTTAAAAAACG
* * * * *
76186141 AGTAACAT-AAAATGTGTTTCGGGATTGCTTCTAGCCGTTAAATGGATTTATT
1 AGTAAAATAAAAATGTGTTTCGGGATTGATTCCAGCCGTTAAACGCATTTATT
76186193 ACATTTTTTA
Statistics
Matches: 168, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
75 9 0.05
76 39 0.23
77 52 0.31
78 3 0.02
79 25 0.15
80 40 0.24
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (79 bp):
AGTAAAATAAAAATGTGTTTCGGGATTGATTCCAGCCGTTAAACGCATTTATTCCAAAGTTGTTT
TATTTTAAAAAACG
Found at i:76186381 original size:84 final size:84
Alignment explanation
Indices: 76186226--76186386 Score: 218
Period size: 84 Copynumber: 1.9 Consensus size: 84
76186216 AACAAGAAAT
* * * *
76186226 TAAATTAAATAAAATCTGTTTCGAGATTTATTCCCCACATTTAACAAGATTTTATTTGATTTTAT
1 TAAATTAAATAAAATATGTTTCAAGATTTATTCCACACATTTAACAAGATTTTATTTGATATTAT
* *
76186291 TTTGTTTTCAAATTCGAAC
66 TCTGTTTCCAAATTCGAAC
*
76186310 TAAATTAAATAAAATATGTTTCAAGATTTATTCCTAC-CGTTTAACAAGATTTTATTCT-ATATT
1 TAAATTAAATAAAATATGTTTCAAGATTTATTCC-ACACATTTAACAAGATTTTATT-TGATATT
*
76186373 GTTCTGTTTCCAAA
64 ATTCTGTTTCCAAA
76186387 CAAAGACGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 65 0.97
85 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (84 bp):
TAAATTAAATAAAATATGTTTCAAGATTTATTCCACACATTTAACAAGATTTTATTTGATATTAT
TCTGTTTCCAAATTCGAAC
Found at i:76186963 original size:56 final size:56
Alignment explanation
Indices: 76186877--76187724 Score: 1687
Period size: 56 Copynumber: 15.1 Consensus size: 56
76186867 ACAAGGGATG
76186877 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76186933 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76186989 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187045 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187101 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187157 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187213 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187269 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187325 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187381 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187437 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187493 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187549 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187605 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
76187661 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76187717 ATGGGCAA
1 ATGGGCAA
76187725 TAAACTAATA
Statistics
Matches: 791, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 791 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76188993 original size:79 final size:81
Alignment explanation
Indices: 76188854--76189036 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 81
76188844 TCGAATGATG
* * *
76188854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGGCTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGGCTAAGATCCAAAGGCATT
*
76188918 TGTGCGAGATACTAAT
66 TGTGCGAGATACTAAA
* * * *
76188934 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGGCTAAGAT-CCAAAGGCAT
*
76188996 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
*
76189013 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76189037 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 29 0.32
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGGCTAAGATCCAAAGGCATT
TGTGCGAGATACTAAA
Found at i:76189057 original size:40 final size:40
Alignment explanation
Indices: 76188854--76189038 Score: 241
Period size: 40 Copynumber: 4.7 Consensus size: 40
76188844 TCGAATGATG
* * * *
76188854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
76188894 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76188934 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76188973 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76189013 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76189039 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.27
40 84 0.67
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76189060 original size:79 final size:79
Alignment explanation
Indices: 76188893--76189061 Score: 209
Period size: 79 Copynumber: 2.1 Consensus size: 79
76188883 AAGTGACCAT
* * *
76188893 ATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGGTTAAG-TCCCAAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATT
**
76188957 GGTGCGAGTTACTAA
65 GGAACGAGTTACTAA
* *
76188972 ATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATT
* *
76189037 TGAACGAG-TAGCTAT
65 GGAACGAGTTA-CTAA
76189052 ATCC-GGTTAA
1 ATCCGGGTTAA
76189062 ATTCCGAAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 53 0.68
80 24 0.31
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTG
GAACGAGTTACTAA
Found at i:76195304 original size:26 final size:26
Alignment explanation
Indices: 76195275--76195326 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
76195265 TCTGTAAGTA
76195275 AACCTAATTTTGTTAGCCACTGCAAT
1 AACCTAATTTTGTTAGCCACTGCAAT
76195301 AACCTAATTTTGTTAGCCACTGCAAT
1 AACCTAATTTTGTTAGCCACTGCAAT
76195327 GCGTATCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (26 bp):
AACCTAATTTTGTTAGCCACTGCAAT
Found at i:76198605 original size:21 final size:21
Alignment explanation
Indices: 76198579--76198619 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
76198569 TAACGTGGCA
76198579 AGTTAACTGGCCACATCAGCT
1 AGTTAACTGGCCACATCAGCT
*
76198600 AGTTAACTTGCCACATCAGC
1 AGTTAACTGGCCACATCAGC
76198620 GGTCTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:76198719 original size:30 final size:30
Alignment explanation
Indices: 76198654--76198722 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
76198644 ACTGTTAATC
* * *
76198654 AGTGACTGTTTTGTCACTTTTTTATAACGTT
1 AGTGACTATTTTGTCAC-TTTTTAAAAAGTT
*
76198685 AGTGACTATTTTGTTA-TTTTTAAAAAGTT
1 AGTGACTATTTTGTCACTTTTTAAAAAGTT
76198714 GAGTGACTA
1 -AGTGACTA
76198723 AAATGAAACC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 11 0.33
30 8 0.24
31 14 0.42
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (30 bp):
AGTGACTATTTTGTCACTTTTTAAAAAGTT
Found at i:76200341 original size:40 final size:44
Alignment explanation
Indices: 76200247--76200345 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 44
76200237 AAATCATTCT
**
76200247 GCACACTTAGTGCCATTTCAGTTAGCCGAAACTAAGTTGGTATC
1 GCACACTTAGTGCCATTTCAGTTAGCCGAAACTAAGTTGAAATC
* *
76200291 GCACACTTAGTGCC-TTT-AG-TAGCCGAAGCT-AGTTTAAATC
1 GCACACTTAGTGCCATTTCAGTTAGCCGAAACTAAGTTGAAATC
76200331 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76200346 ATGCTTCCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
40 21 0.42
41 10 0.20
42 2 0.04
43 3 0.06
44 14 0.28
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (44 bp):
GCACACTTAGTGCCATTTCAGTTAGCCGAAACTAAGTTGAAATC
Found at i:76206039 original size:15 final size:15
Alignment explanation
Indices: 76206019--76206055 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
76206009 AAATTTTGAT
76206019 ATTCATGGTATAATA
1 ATTCATGGTATAATA
76206034 ATTCATGGTATAATA
1 ATTCATGGTATAATA
76206049 ATTCATG
1 ATTCATG
76206056 ATGAAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (15 bp):
ATTCATGGTATAATA
Found at i:76215164 original size:40 final size:40
Alignment explanation
Indices: 76215090--76215231 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
76215080 AACCCAAGTA
* *
76215090 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
76215129 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76215169 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76215209 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
76215232 CATCCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 12 0.13
40 81 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:76218027 original size:19 final size:20
Alignment explanation
Indices: 76217988--76218028 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
76217978 TACAACACAA
*
76217988 TTCAATTTTATATTAAATAT
1 TTCAATTTTATACTAAATAT
*
76218008 TTCAATTTT-TACTCAATAT
1 TTCAATTTTATACTAAATAT
76218027 TT
1 TT
76218029 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (20 bp):
TTCAATTTTATACTAAATAT
Found at i:76222907 original size:39 final size:39
Alignment explanation
Indices: 76222837--76222976 Score: 176
Period size: 39 Copynumber: 3.5 Consensus size: 39
76222827 ATAAAGCATG
* *
76222837 CGGGACTTTAAGCCGGGATATAATACCAGCAC-AAAG-CTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAAAGCCTT
* *
76222876 GCGGGACTTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 -CGGGAC-TTAGCCCGGATATAACACCAGCACGAAAGCCTT
*
76222917 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAAAGCCTT
*
76222956 CGGAACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
76222977 TTCTCCATTA
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 71 0.77
40 18 0.20
41 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAAAGCCTT
Found at i:76225941 original size:15 final size:15
Alignment explanation
Indices: 76225921--76225973 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
76225911 CCAATTTAGA
76225921 TAATTATGAAATGAG
1 TAATTATGAAATGAG
* * *
76225936 TAATTATTATAGGTTA-
1 TAATTATGA-A-ATGAG
76225952 TAATTATGAAATGAG
1 TAATTATGAAATGAG
76225967 TAATTAT
1 TAATTAT
76225974 TATAGGTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 2 0.07
15 16 0.55
16 9 0.31
17 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.42
Consensus pattern (15 bp):
TAATTATGAAATGAG
Found at i:76225955 original size:31 final size:31
Alignment explanation
Indices: 76225920--76225982 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
76225910 ACCAATTTAG
76225920 ATAATTATGAAATGAGTAATTATTATAGGTT
1 ATAATTATGAAATGAGTAATTATTATAGGTT
76225951 ATAATTATGAAATGAGTAATTATTATAGGTT
1 ATAATTATGAAATGAGTAATTATTATAGGTT
76225982 A
1 A
76225983 ACTATTGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (31 bp):
ATAATTATGAAATGAGTAATTATTATAGGTT
Found at i:76226094 original size:3 final size:3
Alignment explanation
Indices: 76226079--76226110 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
76226069 AGGAATAATT
*
76226079 ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
76226111 TATCTCATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (3 bp):
ATC
Found at i:76226526 original size:24 final size:24
Alignment explanation
Indices: 76226499--76226546 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
76226489 GAGGTAGCTA
*
76226499 AGGAGTAGAA-GAAGAAGAATGAAG
1 AGGAGGAGAAGGAAGAAG-ATGAAG
*
76226523 AGGAGGAGAAGGAGGAAGATGAAG
1 AGGAGGAGAAGGAAGAAGATGAAG
76226547 CTTGTTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.50, C:0.00, G:0.44, T:0.06
Consensus pattern (24 bp):
AGGAGGAGAAGGAAGAAGATGAAG
Found at i:76228861 original size:42 final size:42
Alignment explanation
Indices: 76228805--76228891 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
76228795 CTCGATATAT
* *
76228805 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATA
*
76228847 TATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTACTA
1 TATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATA
76228889 TAT
1 TAT
76228892 CCGGGCTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (42 bp):
TATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATA
Found at i:76228910 original size:40 final size:40
Alignment explanation
Indices: 76228805--76228915 Score: 136
Period size: 42 Copynumber: 2.7 Consensus size: 40
76228795 CTCGATATAT
*
76228805 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG--ATA
*
76228847 TATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGG-TA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGATA
* *
76228886 -CTATATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATATCCGGG-TTAAA-TCCCGCAGGCTT
76228916 TGAGCTAGTG
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 9 0.15
39 7 0.11
40 11 0.18
42 35 0.56
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGATA
Found at i:76238663 original size:27 final size:27
Alignment explanation
Indices: 76238632--76238809 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
76238622 TAAATTGTAC
76238632 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76238659 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76238685 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76238713 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
76238741 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76238768 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76238795 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76238810 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76238746 original size:82 final size:81
Alignment explanation
Indices: 76238633--76238788 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
76238623 AAATTGTACA
*
76238633 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
76238697 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76238714 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
76238779 TGCGAGTTGA
65 TGCGAATTGA
76238789 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76238800 original size:82 final size:81
Alignment explanation
Indices: 76238629--76238809 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
76238619 GATTAAATTG
*
76238629 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
76238694 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76238710 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
76238774 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76238792 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76238810 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76248202 original size:47 final size:47
Alignment explanation
Indices: 76248133--76248227 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
76248123 AGAGATAATT
76248133 AGGGGTCATACCATATATGTATGGATTCCTCCCTGAGTCTAGTTTCC
1 AGGGGTCATACCATATATGTATGGATTCCTCCCTGAGTCTAGTTTCC
*
76248180 AGGGGTCATACCATATATGTATGGATTCCTCCCTGAGTCTTGTTTCC
1 AGGGGTCATACCATATATGTATGGATTCCTCCCTGAGTCTAGTTTCC
76248227 A
1 A
76248228 TAGAAACAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (47 bp):
AGGGGTCATACCATATATGTATGGATTCCTCCCTGAGTCTAGTTTCC
Found at i:76256519 original size:56 final size:56
Alignment explanation
Indices: 76256433--76256545 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
76256423 CGAAATTTCT
*
76256433 AGGGTTTCTATAGTTAGGGTTTCAAGCTTTCCAAACTCAATAGTAAGTATTCCCAA
1 AGGGTTTCTATAGCTAGGGTTTCAAGCTTTCCAAACTCAATAGTAAGTATTCCCAA
*
76256489 AGGGTTTCTATAGCTAGGGTTTCAAGCTTTCCAAGCTCAATAGTAAGTATTCCCAA
1 AGGGTTTCTATAGCTAGGGTTTCAAGCTTTCCAAACTCAATAGTAAGTATTCCCAA
76256545 A
1 A
76256546 CCCTGTTTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (56 bp):
AGGGTTTCTATAGCTAGGGTTTCAAGCTTTCCAAACTCAATAGTAAGTATTCCCAA
Found at i:76258625 original size:27 final size:27
Alignment explanation
Indices: 76258567--76258764 Score: 202
Period size: 27 Copynumber: 7.4 Consensus size: 27
76258557 NNNNNNNNNN
*
76258567 GGTAAAATGACCGAAATACCCCTG-AG
1 GGTAAAATGACCGAAATACCCCCGTAG
* *
76258593 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCGTAG
* ** *
76258620 GATAAAATGACCGAAATACCCTTGTAA
1 GGTAAAATGACCGAAATACCCCCGTAG
*
76258647 GGTAAAATGACCGAAATACCCCTGTAG
1 GGTAAAATGACCGAAATACCCCCGTAG
*** * *
76258674 GGTAAAATGATTAAAATACCCCTGTAA
1 GGTAAAATGACCGAAATACCCCCGTAG
* * *
76258701 AGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCGTAG
* * * *
76258728 GGTAAAATAACCGAAATACTCCTGTAA
1 GGTAAAATGACCGAAATACCCCCGTAG
76258755 GGT-AAATGAC
1 GGTAAAATGAC
76258765 TGTAATACTC
Statistics
Matches: 141, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 27 0.19
27 114 0.81
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCGTAG
Found at i:76258666 original size:54 final size:54
Alignment explanation
Indices: 76258567--76258764 Score: 265
Period size: 54 Copynumber: 3.7 Consensus size: 54
76258557 NNNNNNNNNN
* *
76258567 GGTAAAATGACCGAAATACCCCTG-AGGGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTGTAAGGTAAAATGACCGAAATACCCCCATAG
* * **
76258620 GATAAAATGACCGAAATACCCTTGTAAGGTAAAATGACCGAAATACCCCTGTAG
1 GGTAAAATGACCGAAATACCCCTGTAAGGTAAAATGACCGAAATACCCCCATAG
*** * *
76258674 GGTAAAATGATTAAAATACCCCTGTAAAGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTGTAAGGTAAAATGACCGAAATACCCCCATAG
* *
76258728 GGTAAAATAACCGAAATACTCCTGTAAGGT-AAATGAC
1 GGTAAAATGACCGAAATACCCCTGTAAGGTAAAATGAC
76258765 TGTAATACTC
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
53 29 0.24
54 94 0.76
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (54 bp):
GGTAAAATGACCGAAATACCCCTGTAAGGTAAAATGACCGAAATACCCCCATAG
Found at i:76258707 original size:81 final size:81
Alignment explanation
Indices: 76258567--76258760 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 81
76258557 NNNNNNNNNN
* *
76258567 GGTAAAATGACCGAAATACCCCTG-AGGGTAAAATGATCGAAATACCCCCATAGGATAAAATGAC
1 GGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGATCAAAATACCCCCATAAGATAAAATGAC
***
76258631 CGAAATACCCTTGTAA
66 CGAAATACCCCCATAA
* **
76258647 GGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGATTAAAATACCCCTGTAA-AGTAAAATGA
1 GGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGATCAAAATACCCCCATAAGA-TAAAATGA
* *
76258711 CTGAAATACCCCCATAG
65 CCGAAATACCCCCATAA
* * *
76258728 GGTAAAATAACCGAAATACTCCTGTAAGGTAAA
1 GGTAAAATGACCGAAATACCCCTGTAGGGTAAA
76258761 TGACTGTAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 25 0.25
81 74 0.75
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (81 bp):
GGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGATCAAAATACCCCCATAAGATAAAATGAC
CGAAATACCCCCATAA
Found at i:76260386 original size:28 final size:28
Alignment explanation
Indices: 76260323--76260473 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
76260313 ATATTAAGTC
*
76260323 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76260350 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
76260378 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
76260406 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76260434 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76260463 CGCACACTTAG
1 CGCACACTTAG
76260474 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 76 0.67
29 15 0.13
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76260940 original size:12 final size:12
Alignment explanation
Indices: 76260925--76260951 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76260915 TGGGCATACT
76260925 TATGTATATATA
1 TATGTATATATA
76260937 TATGTATATATA
1 TATGTATATATA
76260949 TAT
1 TAT
76260952 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:76269022 original size:21 final size:21
Alignment explanation
Indices: 76268998--76269054 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
76268988 GTGTCTCTTA
*
76268998 GTCACATGGCCGTGTCCCTCC
1 GTCACATGACCGTGTCCCTCC
*
76269019 GTCACATGATCGTGTCCCTCC
1 GTCACATGACCGTGTCCCTCC
*
76269040 GTCACACGACCGTGT
1 GTCACATGACCGTGT
76269055 AGCCTGCCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.14, C:0.39, G:0.23, T:0.25
Consensus pattern (21 bp):
GTCACATGACCGTGTCCCTCC
Found at i:76271797 original size:71 final size:71
Alignment explanation
Indices: 76271609--76271776 Score: 214
Period size: 71 Copynumber: 2.4 Consensus size: 71
76271599 TGTTGCCTAT
* * * * * *
76271609 CCAACTTCAAACCAA-AGGGGGAACATATAGCCACCAATGTCACGACAACCACCATCCCATGTCG
1 CCAACTTCAAACCAAGAGAGGGAGCATACAACCAGCAATGTCGCGACAACCACCATCCCATGTCG
76271673 CAACAC
66 CAACAC
* *
76271679 CCAACTTCAAACCTAGAGGGGGAGCATACAACCAGCAATGTCGCGACAACCACCA-CTCCATGTC
1 CCAACTTCAAACCAAGAGAGGGAGCATACAACCAGCAATGTCGCGACAACCACCATC-CCATGTC
* * *
76271743 GCGATAT
65 GCAACAC
76271750 CCAACTTCAAACCAAGAGAGGGAGCAT
1 CCAACTTCAAACCAAGAGAGGGAGCAT
76271777 TCAATGTTCA
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
70 15 0.18
71 70 0.82
ACGTcount: A:0.36, C:0.33, G:0.18, T:0.14
Consensus pattern (71 bp):
CCAACTTCAAACCAAGAGAGGGAGCATACAACCAGCAATGTCGCGACAACCACCATCCCATGTCG
CAACAC
Found at i:76296907 original size:29 final size:30
Alignment explanation
Indices: 76296875--76296933 Score: 68
Period size: 31 Copynumber: 2.0 Consensus size: 30
76296865 TCACGTGTAT
76296875 AATTACACCA-AAAT-AAAGTTCATGTATAC
1 AATTACA-CATAAATCAAAGTTCATGTATAC
* *
76296904 AATTGCACATTAAATCAAAGTTTATGTATA
1 AATTACACA-TAAATCAAAGTTCATGTATA
76296934 ATTTTAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 2 0.08
29 6 0.24
30 4 0.16
31 13 0.52
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (30 bp):
AATTACACATAAATCAAAGTTCATGTATAC
Found at i:76297251 original size:29 final size:29
Alignment explanation
Indices: 76297219--76297276 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
76297209 TTGTGTCAAT
*
76297219 GTGCAATTCCATACATG-AATTTTGATTTG
1 GTGCAATTACATACATGAAATTTT-ATTTG
*
76297248 GTGCAATTATATACATGAAATTTTATTTG
1 GTGCAATTACATACATGAAATTTTATTTG
76297277 CGATTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (29 bp):
GTGCAATTACATACATGAAATTTTATTTG
Found at i:76298659 original size:23 final size:24
Alignment explanation
Indices: 76298615--76298659 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
76298605 TAATAAATTA
*
76298615 TATATTCTAAAATATATTTTAACT
1 TATATTCTAAAATATATCTTAACT
76298639 TATATT-T-AAATATTATCTTAA
1 TATATTCTAAAATA-TATCTTAA
76298660 AACTATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (24 bp):
TATATTCTAAAATATATCTTAACT
Found at i:76298933 original size:3 final size:3
Alignment explanation
Indices: 76298925--76299230 Score: 612
Period size: 3 Copynumber: 102.0 Consensus size: 3
76298915 AAATTGAGGT
76298925 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76298973 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76299021 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76299069 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76299117 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76299165 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76299213 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
76299231 GAAGGACCAA
Statistics
Matches: 303, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 303 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:76299605 original size:23 final size:22
Alignment explanation
Indices: 76299578--76299627 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
76299568 GAACTTAAAT
76299578 TTTAAA-TTTTAAAAAGTAAAAA
1 TTTAAATTTTTAAAAA-TAAAAA
76299600 TATTAAATTTTTAAAAATAAAAA
1 T-TTAAATTTTTAAAAATAAAAA
76299623 TTTAA
1 TTTAA
76299628 GGACTAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.19
23 12 0.46
24 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TTTAAATTTTTAAAAATAAAAA
Found at i:76303827 original size:16 final size:17
Alignment explanation
Indices: 76303806--76303838 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76303796 ATACCTTGCA
76303806 TAACAAA-ATAAATATT
1 TAACAAATATAAATATT
*
76303822 TAACAAATATAATTATT
1 TAACAAATATAAATATT
76303839 CAATTTATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
TAACAAATATAAATATT
Found at i:76305379 original size:72 final size:70
Alignment explanation
Indices: 76305302--76305475 Score: 158
Period size: 73 Copynumber: 2.4 Consensus size: 70
76305292 TAAATAGTGG
*** *
76305302 TAAATTTATTTTTGGTCCCCAAAGTTTTTAATATTATT-ATTTTATCCTTGTATCATTACTTAAA
1 TAAATTTA-TTTTGGTCCCCAAAGTTTTTAATATT-TTAAACCTATCCTTCTATCATTACTTAAA
*
76305366 AATAATG
64 AATAATA
* *
76305373 TAAAATTTGA-TTTGG-CCCTTCAAATTTTTTTAATATTTTAAACCTATCCTTCTATCATTATTT
1 T-AAATTT-ATTTTGGTCCC--CAAA-GTTTTTAATATTTTAAACCTATCCTTCTATCATTACTT
*
76305436 AAAAGTAATA
61 AAAAATAATA
76305446 TAAA-TTATATTTGGTCCTTCCAAAGTTTTT
1 TAAATTTAT-TTTGGTCC--CCAAAGTTTTT
76305476 CAATTTAATC
Statistics
Matches: 83, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
70 4 0.05
71 8 0.10
72 25 0.30
73 45 0.54
75 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.48
Consensus pattern (70 bp):
TAAATTTATTTTGGTCCCCAAAGTTTTTAATATTTTAAACCTATCCTTCTATCATTACTTAAAAA
TAATA
Found at i:76307301 original size:12 final size:12
Alignment explanation
Indices: 76307269--76307303 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
76307259 ATTTGAGATG
76307269 ATATATATATGT
1 ATATATATATGT
*
76307281 ATGTATATATGT
1 ATATATATATGT
*
76307293 ATATGTATATG
1 ATATATATATG
76307304 ATGCTGATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (12 bp):
ATATATATATGT
Found at i:76308312 original size:60 final size:60
Alignment explanation
Indices: 76308219--76308335 Score: 216
Period size: 60 Copynumber: 1.9 Consensus size: 60
76308209 TCATATATAT
*
76308219 TTCCTTATTTATTTATGACATAATGACTTATTTGGTCTTCCAACTTTATAAGAAAAATCA
1 TTCCTTATTTATTTATGACATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAATCA
*
76308279 TTCCTTATTTATTTATGGCATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAA
1 TTCCTTATTTATTTATGACATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAA
76308336 AATCATTTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.43
Consensus pattern (60 bp):
TTCCTTATTTATTTATGACATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAATCA
Found at i:76309578 original size:18 final size:19
Alignment explanation
Indices: 76309555--76309590 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
76309545 TTAAAAAAAA
*
76309555 CATTATTGTTAT-ATTATG
1 CATTATAGTTATCATTATG
76309573 CATTATAGTTATCATTAT
1 CATTATAGTTATCATTAT
76309591 ATATTTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (19 bp):
CATTATAGTTATCATTATG
Found at i:76311482 original size:3 final size:3
Alignment explanation
Indices: 76311476--76311522 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
76311466 TTTAGCCACT
*
76311476 TTA TTA TT- TTG TTTA TT- TTA TTA TTA TTA TTA TTA TTA TTA CTTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
76311521 TT
1 TT
76311523 TGTTTATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
2 4 0.10
3 30 0.77
4 5 0.13
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:76313814 original size:8 final size:7
Alignment explanation
Indices: 76313797--76313846 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
76313787 CTTGGGCCCC
76313797 TTTTTCT
1 TTTTTCT
76313804 TTTTTCT
1 TTTTTCT
76313811 TTTTT-T
1 TTTTTCT
*
76313817 TTTCTCT
1 TTTTTCT
76313824 TTTTTC-
1 TTTTTCT
* *
76313830 CTCTTCT
1 TTTTTCT
76313837 TTTTTCT
1 TTTTTCT
76313844 TTT
1 TTT
76313847 CTTTTTCTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 9 0.26
7 26 0.74
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:76313814 original size:13 final size:13
Alignment explanation
Indices: 76313797--76313852 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
76313787 CTTGGGCCCC
76313797 TTTTTCTTTTTTCT
1 TTTTTC-TTTTTCT
76313811 TTTTT-TTTTCTCT
1 TTTTTCTTTT-TCT
* *
76313824 TTTTTCCTCTTCT
1 TTTTTCTTTTTCT
76313837 TTTTTC-TTTTCT
1 TTTTTCTTTTTCT
76313849 TTTT
1 TTTT
76313853 CTGGCCTGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
12 13 0.35
13 17 0.46
14 7 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:76313818 original size:12 final size:12
Alignment explanation
Indices: 76313798--76313852 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
76313788 TTGGGCCCCT
76313798 TTTTCTTTTTTC
1 TTTTCTTTTTTC
76313810 TTTT-TTTTTTC
1 TTTTCTTTTTTC
76313821 ---TCTTTTTTCC
1 TTTTCTTTTTT-C
*
76313831 TCTTCTTTTTTC
1 TTTTCTTTTTTC
76313843 TTTTCTTTTT
1 TTTTCTTTTT
76313853 CTGGCCTGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
8 1 0.03
9 6 0.16
10 1 0.03
11 7 0.19
12 14 0.38
13 8 0.22
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:76313844 original size:20 final size:19
Alignment explanation
Indices: 76313797--76313846 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
76313787 CTTGGGCCCC
* *
76313797 TTTTTCTTTTTTCTTTTTT
1 TTTTTCTTTTTTCTCTTCT
76313816 TTTTCTCTTTTTTCCTCTTCT
1 TTTT-TCTTTTTT-CTCTTCT
76313837 TTTTTCTTTT
1 TTTTTCTTTT
76313847 CTTTTTCTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 4 0.15
20 14 0.52
21 9 0.33
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTCTTTTTTCTCTTCT
Found at i:76313913 original size:23 final size:23
Alignment explanation
Indices: 76313887--76313945 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
76313877 GCTTGGAGGC
*
76313887 CTGCTGGCCTGCTAGGGGCTGGG
1 CTGCTGGCCTGCTAGGGACTGGG
76313910 CTGCTGGCCTGCTAGGGACTGGG
1 CTGCTGGCCTGCTAGGGACTGGG
76313933 CTGCTGGCCTGCT
1 CTGCTGGCCTGCT
76313946 GGGCTGCCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.05, C:0.29, G:0.42, T:0.24
Consensus pattern (23 bp):
CTGCTGGCCTGCTAGGGACTGGG
Found at i:76314125 original size:13 final size:13
Alignment explanation
Indices: 76314109--76314150 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
76314099 ATTTTTTATT
76314109 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
76314122 TTTTTTCTTTTTTC
1 TTTTTTC-TTTTTC
* *
76314136 TTTCTTCTTCTTC
1 TTTTTTCTTTTTC
76314149 TT
1 TT
76314151 CTTCAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:76314135 original size:7 final size:7
Alignment explanation
Indices: 76314093--76314144 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
76314083 TGTTATAATA
*
76314093 TTTTTTA
1 TTTTTTC
*
76314100 TTTTTTA
1 TTTTTTC
*
76314107 TTTTTTT
1 TTTTTTC
76314114 TCTTTTTC
1 T-TTTTTC
76314122 TTTTTTC
1 TTTTTTC
76314129 TTTTTTC
1 TTTTTTC
*
76314136 TTTCTTC
1 TTTTTTC
76314143 TT
1 TT
76314145 CTTCTTCTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
7 35 0.85
8 6 0.15
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:76314510 original size:30 final size:30
Alignment explanation
Indices: 76314476--76314582 Score: 112
Period size: 30 Copynumber: 3.6 Consensus size: 30
76314466 AAATGTAGGA
* *
76314476 AAAGTTTTGGGGCCAAAACATAATGTGT-AG
1 AAAGTTTAGGGGTCAAAACATAAT-TGTAAG
* *
76314506 AAAGTTTAGGGGTTAAAACATAATTTTAAG
1 AAAGTTTAGGGGTCAAAACATAATTGTAAG
**
76314536 AAAGTTTAGGGGTCAAAATGTAATT-TCAA-
1 AAAGTTTAGGGGTCAAAACATAATTGT-AAG
*
76314565 AAAGTTTAGGGGTAAAAA
1 AAAGTTTAGGGGTCAAAA
76314583 TGTAATTTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
29 20 0.30
30 47 0.70
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAGTTTAGGGGTCAAAACATAATTGTAAG
Found at i:76314603 original size:30 final size:29
Alignment explanation
Indices: 76314506--76314614 Score: 146
Period size: 30 Copynumber: 3.7 Consensus size: 29
76314496 TAATGTGTAG
**
76314506 AAAGTTTAGGGGTTAAAACATAATTTTAA
1 AAAGTTTAGGGGTTAAAATGTAATTTTAA
* *
76314535 GAAAGTTTAGGGGTCAAAATGTAATTTCAA
1 -AAAGTTTAGGGGTTAAAATGTAATTTTAA
*
76314565 AAAGTTTAGGGGTAAAAATGTAATTTTGAA
1 AAAGTTTAGGGGTTAAAATGTAATTTT-AA
*
76314595 AAATTTTAGGGGTTAAAATG
1 AAAGTTTAGGGGTTAAAATG
76314615 AACTTTTTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
29 25 0.36
30 45 0.64
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (29 bp):
AAAGTTTAGGGGTTAAAATGTAATTTTAA
Found at i:76315025 original size:26 final size:27
Alignment explanation
Indices: 76314975--76315040 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
76314965 GTACACATAC
*
76314975 ATACATACATTTTGATAATATATATAT
1 ATACATATATTTTGATAATATATATAT
* *
76315002 GTACATATATTTT-ATAATTTATATAT
1 ATACATATATTTTGATAATATATATAT
*
76315028 ATACATATGTTTT
1 ATACATATATTTT
76315041 TGTCATATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (27 bp):
ATACATATATTTTGATAATATATATAT
Found at i:76316223 original size:109 final size:108
Alignment explanation
Indices: 76315991--76316280 Score: 433
Period size: 111 Copynumber: 2.7 Consensus size: 108
76315981 AATTCAAGAA
* * *
76315991 GATATTTGGCTATTTGGTTAAATGAG--AAATCGAAACCCAGCACATTAGGGCACG-TTCCTCGA
1 GATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
**
76316053 ATTTCCAAACGCAAAACATTGCCTTATTTGAAATTTTTGGAAG
66 ATTTCCAAACGCAAAACATTGCCTTATTTGAAATTTTTAAAAG
*
76316096 GATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGACACGTTTTCTCGA
1 GATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
*
76316161 ATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTTTTAAAAG
66 ATTTCCAAACGCAAAACATTGCCTTA-TTTGAAATTTTTAAAAG
* ** *
76316205 GATATTTAGCTATTTGGTTGAACGAGAAAAAAATCGAATGCCAGCACATTAGGGCACATTTTCTC
1 GATATTTGGCTATTTGGTTGAACGAG--AAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
76316270 GAATTTCCAAA
64 GAATTTCCAAA
76316281 AAACTAAATA
Statistics
Matches: 167, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
105 24 0.14
107 27 0.16
108 32 0.19
109 40 0.24
111 44 0.26
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (108 bp):
GATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
ATTTCCAAACGCAAAACATTGCCTTATTTGAAATTTTTAAAAG
Found at i:76316564 original size:4 final size:4
Alignment explanation
Indices: 76316555--76316588 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
76316545 AACATATTGG
* *
76316555 ATAA ATAA ATAA GTAA ATAA ATAA ATGA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
76316589 GAATCAAGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:76317947 original size:8 final size:7
Alignment explanation
Indices: 76317930--76317979 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
76317920 CTTGGGCCCC
76317930 TTTTTCT
1 TTTTTCT
76317937 TTTTTCT
1 TTTTTCT
76317944 TTTTT-T
1 TTTTTCT
*
76317950 TTTCTCT
1 TTTTTCT
76317957 TTTTTC-
1 TTTTTCT
* *
76317963 CTCTTCT
1 TTTTTCT
76317970 TTTTTCT
1 TTTTTCT
76317977 TTT
1 TTT
76317980 CTTTTTCTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 9 0.26
7 26 0.74
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:76317947 original size:13 final size:13
Alignment explanation
Indices: 76317930--76317985 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
76317920 CTTGGGCCCC
76317930 TTTTTCTTTTTTCT
1 TTTTTC-TTTTTCT
76317944 TTTTT-TTTTCTCT
1 TTTTTCTTTT-TCT
* *
76317957 TTTTTCCTCTTCT
1 TTTTTCTTTTTCT
76317970 TTTTTC-TTTTCT
1 TTTTTCTTTTTCT
76317982 TTTT
1 TTTT
76317986 CTGGCCTGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
12 13 0.35
13 17 0.46
14 7 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:76317951 original size:12 final size:12
Alignment explanation
Indices: 76317931--76317985 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
76317921 TTGGGCCCCT
76317931 TTTTCTTTTTTC
1 TTTTCTTTTTTC
76317943 TTTT-TTTTTTC
1 TTTTCTTTTTTC
76317954 ---TCTTTTTTCC
1 TTTTCTTTTTT-C
*
76317964 TCTTCTTTTTTC
1 TTTTCTTTTTTC
76317976 TTTTCTTTTT
1 TTTTCTTTTT
76317986 CTGGCCTGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
8 1 0.03
9 6 0.16
10 1 0.03
11 7 0.19
12 14 0.38
13 8 0.22
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:76317977 original size:20 final size:19
Alignment explanation
Indices: 76317930--76317979 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
76317920 CTTGGGCCCC
* *
76317930 TTTTTCTTTTTTCTTTTTT
1 TTTTTCTTTTTTCTCTTCT
76317949 TTTTCTCTTTTTTCCTCTTCT
1 TTTT-TCTTTTTT-CTCTTCT
76317970 TTTTTCTTTT
1 TTTTTCTTTT
76317980 CTTTTTCTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 4 0.15
20 14 0.52
21 9 0.33
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTCTTTTTTCTCTTCT
Found at i:76318046 original size:23 final size:23
Alignment explanation
Indices: 76318020--76318078 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
76318010 GCTTGGAGGC
*
76318020 CTGCTGGCCTGCTAGGGGCTGGG
1 CTGCTGGCCTGCTAGGGACTGGG
76318043 CTGCTGGCCTGCTAGGGACTGGG
1 CTGCTGGCCTGCTAGGGACTGGG
76318066 CTGCTGGCCTGCT
1 CTGCTGGCCTGCT
76318079 GGGCTGCCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.05, C:0.29, G:0.42, T:0.24
Consensus pattern (23 bp):
CTGCTGGCCTGCTAGGGACTGGG
Found at i:76318258 original size:13 final size:13
Alignment explanation
Indices: 76318242--76318283 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
76318232 ATTTTTTATT
76318242 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
76318255 TTTTTTCTTTTTTC
1 TTTTTTC-TTTTTC
* *
76318269 TTTCTTCTTCTTC
1 TTTTTTCTTTTTC
76318282 TT
1 TT
76318284 CTTCAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:76318268 original size:7 final size:7
Alignment explanation
Indices: 76318226--76318277 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
76318216 TGTTATAATA
*
76318226 TTTTTTA
1 TTTTTTC
*
76318233 TTTTTTA
1 TTTTTTC
*
76318240 TTTTTTT
1 TTTTTTC
76318247 TCTTTTTC
1 T-TTTTTC
76318255 TTTTTTC
1 TTTTTTC
76318262 TTTTTTC
1 TTTTTTC
*
76318269 TTTCTTC
1 TTTTTTC
76318276 TT
1 TT
76318278 CTTCTTCTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
7 35 0.85
8 6 0.15
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:76318643 original size:30 final size:30
Alignment explanation
Indices: 76318609--76318715 Score: 112
Period size: 30 Copynumber: 3.6 Consensus size: 30
76318599 AAATGTAGGA
* *
76318609 AAAGTTTTGGGGCCAAAACATAATGTGT-AG
1 AAAGTTTAGGGGTCAAAACATAAT-TGTAAG
* *
76318639 AAAGTTTAGGGGTTAAAACATAATTTTAAG
1 AAAGTTTAGGGGTCAAAACATAATTGTAAG
**
76318669 AAAGTTTAGGGGTCAAAATGTAATT-TCAA-
1 AAAGTTTAGGGGTCAAAACATAATTGT-AAG
*
76318698 AAAGTTTAGGGGTAAAAA
1 AAAGTTTAGGGGTCAAAA
76318716 TGTAATTTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
29 20 0.30
30 47 0.70
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAGTTTAGGGGTCAAAACATAATTGTAAG
Found at i:76318736 original size:30 final size:29
Alignment explanation
Indices: 76318639--76318747 Score: 146
Period size: 30 Copynumber: 3.7 Consensus size: 29
76318629 TAATGTGTAG
**
76318639 AAAGTTTAGGGGTTAAAACATAATTTTAA
1 AAAGTTTAGGGGTTAAAATGTAATTTTAA
* *
76318668 GAAAGTTTAGGGGTCAAAATGTAATTTCAA
1 -AAAGTTTAGGGGTTAAAATGTAATTTTAA
*
76318698 AAAGTTTAGGGGTAAAAATGTAATTTTGAA
1 AAAGTTTAGGGGTTAAAATGTAATTTT-AA
*
76318728 AAATTTTAGGGGTTAAAATG
1 AAAGTTTAGGGGTTAAAATG
76318748 AACTTTTTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
29 25 0.36
30 45 0.64
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (29 bp):
AAAGTTTAGGGGTTAAAATGTAATTTTAA
Found at i:76319158 original size:26 final size:27
Alignment explanation
Indices: 76319108--76319173 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
76319098 GTACACATAC
*
76319108 ATACATACATTTTGATAATATATATAT
1 ATACATATATTTTGATAATATATATAT
* *
76319135 GTACATATATTTT-ATAATTTATATAT
1 ATACATATATTTTGATAATATATATAT
*
76319161 ATACATATGTTTT
1 ATACATATATTTT
76319174 TGTCATATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (27 bp):
ATACATATATTTTGATAATATATATAT
Found at i:76320582 original size:4 final size:4
Alignment explanation
Indices: 76320573--76320606 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
76320563 AACATATTGG
* *
76320573 ATAA ATAA ATAA GTAA ATAA ATAA ATGA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
76320607 GAATCAAGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:76321032 original size:39 final size:40
Alignment explanation
Indices: 76320974--76321053 Score: 110
Period size: 39 Copynumber: 2.0 Consensus size: 40
76320964 AATCTTTTAG
76320974 AAAAGAAAGAAAAAATAAAT-AAATAA-ATAATAAAAATA
1 AAAAGAAAGAAAAAATAAATGAAATAAGATAATAAAAATA
* *
76321012 AAAATGAAAGAAAACATAAATGAAATAAGGATAATAATAATA
1 AAAA-GAAAGAAAAAATAAATGAAATAA-GATAATAAAAATA
76321054 TTACTAATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 4 0.11
39 15 0.42
40 6 0.17
42 11 0.31
ACGTcount: A:0.72, C:0.01, G:0.09, T:0.17
Consensus pattern (40 bp):
AAAAGAAAGAAAAAATAAATGAAATAAGATAATAAAAATA
Found at i:76321212 original size:3 final size:3
Alignment explanation
Indices: 76321204--76321229 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
76321194 CAATGTTAGC
76321204 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
76321230 ATGCTAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:76339602 original size:19 final size:20
Alignment explanation
Indices: 76339568--76339606 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
76339558 TTTCTTTCAC
76339568 TAGCCTCATCAATTTCTCAAA
1 TAGCCTCA-CAATTTCTCAAA
76339589 TAGCCTCA-AATTTCTCAA
1 TAGCCTCACAATTTCTCAA
76339607 CTTTTCTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (20 bp):
TAGCCTCACAATTTCTCAAA
Found at i:76347943 original size:43 final size:44
Alignment explanation
Indices: 76347794--76347962 Score: 139
Period size: 43 Copynumber: 3.9 Consensus size: 44
76347784 TAAAGCTCAT
* * * * * *
76347794 ACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA-TATA
1 ACAATGCCAATGTCCCAGACATAGTCTTACACGTAATCACAATA
* * * * * * * *
76347836 TCGATGCCACTGTCCTAGACAGAGTCTTACACGAAATC-GATTA
1 ACAATGCCAATGTCCCAGACATAGTCTTACACGTAATCACAATA
*
76347879 ACAATGCCAATGTCCCAGACATAGTTTTACACGTAATCACAAT-
1 ACAATGCCAATGTCCCAGACATAGTCTTACACGTAATCACAATA
* * * *
76347922 ACAATGCCAGTGTCCCAGACATGGTCTGACATGTAATCACA
1 ACAATGCCAATGTCCCAGACATAGTCTTACACGTAATCACA
76347963 TCTTAGTAAC
Statistics
Matches: 97, Mismatches: 27, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 6 0.06
43 89 0.92
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (44 bp):
ACAATGCCAATGTCCCAGACATAGTCTTACACGTAATCACAATA
Found at i:76348178 original size:39 final size:39
Alignment explanation
Indices: 76348124--76348200 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
76348114 CAATGTAAGT
*
76348124 ACGTCTATTAGCATACGAACTTGCTTCGTTCGCTGAAAG
1 ACGTCTATTAGCATACGAACTTACTTCGTTCGCTGAAAG
76348163 ACGTCTATTAGCATACGAACTTACTTCGTTCGCTGAAA
1 ACGTCTATTAGCATACGAACTTACTTCGTTCGCTGAAA
76348201 CGATGAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (39 bp):
ACGTCTATTAGCATACGAACTTACTTCGTTCGCTGAAAG
Found at i:76350142 original size:21 final size:21
Alignment explanation
Indices: 76350116--76350156 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76350106 AGCCTCCTAA
*
76350116 AGTTGT-TGTTTCTCTTTCTTT
1 AGTTGTATGTTT-TCTATCTTT
76350137 AGTTGTATGTTTTCTATCTT
1 AGTTGTATGTTTTCTATCTT
76350157 CAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.10, C:0.12, G:0.15, T:0.63
Consensus pattern (21 bp):
AGTTGTATGTTTTCTATCTTT
Done.