Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 233 of 310
Found at i:76791931 original size:46 final size:46
Alignment explanation
Indices: 76791879--76792106 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
76791869 AGTGTGCTCT
76791879 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76791925 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
76791971 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
76792017 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
76792063 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGATACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76792107 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76793281 original size:23 final size:23
Alignment explanation
Indices: 76793249--76793312 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
76793239 ACCAATATCG
*
76793249 CAGCATAGCTGCTAATAGTAACA
1 CAGCAAAGCTGCTAATAGTAACA
* *
76793272 CAGTAAAGCTGCTAATAGTAACG
1 CAGCAAAGCTGCTAATAGTAACA
*
76793295 CAGCAAAGTTGCTAATAG
1 CAGCAAAGCTGCTAATAG
76793313 AGGTAAACGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (23 bp):
CAGCAAAGCTGCTAATAGTAACA
Found at i:76797061 original size:16 final size:17
Alignment explanation
Indices: 76797040--76797078 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
76797030 ACTATAACGC
76797040 CCCAAAAATCTCGAAA-
1 CCCAAAAATCTCGAAAT
76797056 CCCAAAAATCTCGAAAT
1 CCCAAAAATCTCGAAAT
76797073 CCCAAA
1 CCCAAA
76797079 CTTTTTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCTCGAAAT
Found at i:76797688 original size:14 final size:14
Alignment explanation
Indices: 76797669--76797696 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76797659 AGAAAAGGGG
76797669 AGTAAGCTTTACGC
1 AGTAAGCTTTACGC
76797683 AGTAAGCTTTACGC
1 AGTAAGCTTTACGC
76797697 TTAGTAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
AGTAAGCTTTACGC
Found at i:76798957 original size:28 final size:28
Alignment explanation
Indices: 76798919--76799025 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
76798909 GAATCATTCG
* *
76798919 ATATTTTGCACACTAAGTGACATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
76798947 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
76798975 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
76799003 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
76799026 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:76801618 original size:28 final size:29
Alignment explanation
Indices: 76801582--76801693 Score: 156
Period size: 29 Copynumber: 3.9 Consensus size: 29
76801572 ATGAGCATGA
*
76801582 ATATGAATGTGA-TTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
76801610 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
76801639 ATATACAGGTGATTTGGGCCTAATGAGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
76801668 ATATAAATATGA-TTGGGCTTAATGGG
1 ATATAAATGTGATTTGGGCCTAATGGG
76801694 GCAGATACAG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 23 0.31
29 51 0.69
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:76801692 original size:57 final size:57
Alignment explanation
Indices: 76801590--76801705 Score: 171
Period size: 57 Copynumber: 2.0 Consensus size: 57
76801580 GAATATGAAT
* * *
76801590 GTGATTGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAATGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
* *
76801647 GTGATTTGGGCCTAATGAGCCATATAAATATGA-TTGGGCTTAATGGGGCAGATACAG
1 GTGA-TTGGGCCTAATGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
76801704 GT
1 GT
76801706 ATGTGAAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
57 27 0.51
58 26 0.49
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAATGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
Found at i:76817328 original size:54 final size:54
Alignment explanation
Indices: 76817150--76817301 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 54
76817140 GGACATGGGC
* * ** * * *
76817150 TGAGACACGGGCATGTCG-CCCAAGTCAGTGAGTTACACGGTCTGGCATACGGGT
1 TGAGACACGGGCGTGT-GACCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
* * ** *
76817204 TGTGACATGATCGTGTGGCCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
1 TGAGACACGGGCGTGTGACCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
*
76817258 TGAGACACGGGCGTGTGACCCAAGTTAGTGAGTTACATGGTCTA
1 TGAGACACGGGCGTGTGACCCAAGTCAGTGAGTTACATGGTCTA
76817302 GTAGATGATT
Statistics
Matches: 80, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 79 0.99
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (54 bp):
TGAGACACGGGCGTGTGACCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
Found at i:76819555 original size:20 final size:19
Alignment explanation
Indices: 76819529--76819580 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 19
76819519 TTAGAGCTGG
*
76819529 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAAGAA
76819548 ACATATCGATACCTTAAGAA
1 A-ATATCGATACCTTAAGAA
76819568 AATTATCGATACC
1 AA-TATCGATACC
76819581 GGATCGATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:76819979 original size:32 final size:33
Alignment explanation
Indices: 76819925--76819990 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
76819915 TGAATAGATT
* *
76819925 GCTCCCCTTTAATAAAAGTCATTTTCAATTTAA
1 GCTCCCCTATAATAAAAATCATTTTCAATTTAA
76819958 GCTCCCCTAT-ATAAAAATCATTTTCAATTTAA
1 GCTCCCCTATAATAAAAATCATTTTCAATTTAA
76819990 G
1 G
76819991 GCATAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 22 0.71
33 9 0.29
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (33 bp):
GCTCCCCTATAATAAAAATCATTTTCAATTTAA
Found at i:76821481 original size:55 final size:53
Alignment explanation
Indices: 76821414--76821551 Score: 150
Period size: 53 Copynumber: 2.6 Consensus size: 53
76821404 GCAAGGAAAT
* * *
76821414 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGTAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATG-TAAACTAC-ATAAGGCAAAGATAC
* * ** * * *
76821469 CATGTAAGACCATGCCAAGGCATGGCAATGTTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCAATGTAAACTACATAAGGCAAAGATAC
* *
76821522 CACGTAAGACCATATCAAGACATGGCAATG
1 CATGTAAGACCATGTCAAGACATGGCAATG
76821552 GTAAGTTAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
53 38 0.55
54 4 0.06
55 27 0.39
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATGTAAACTACATAAGGCAAAGATAC
Found at i:76827060 original size:3 final size:3
Alignment explanation
Indices: 76827054--76827084 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
76827044 TGAAGGAGGA
76827054 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
76827085 GAGAAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:76833732 original size:38 final size:38
Alignment explanation
Indices: 76833690--76833800 Score: 94
Period size: 38 Copynumber: 3.1 Consensus size: 38
76833680 GGTTTTCTAC
*
76833690 ATTAACATAATACATTAAATATTATTGTTAAACTAAAT
1 ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
* ** **
76833728 ATTAAAATAAT--ATT--ATCTT-GGGTT-TTCT--AT
1 ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
* *
76833758 ATTAATATAATACATTAAATATTATTTTTAAACTAAAT
1 ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
76833796 ATTAA
1 ATTAA
76833801 TATTAAAAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 16
0.64 0.16 0.20
Matches are distributed among these distances:
30 12 0.23
32 5 0.10
33 3 0.06
34 8 0.15
35 2 0.04
36 5 0.10
38 17 0.33
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (38 bp):
ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
Found at i:76833737 original size:68 final size:68
Alignment explanation
Indices: 76833639--76833800 Score: 227
Period size: 68 Copynumber: 2.4 Consensus size: 68
76833629 TGGTTAGAGT
* * * *
76833639 AATATTAATATTAAAAT-AAGATTTACAATAAGATTATCTTGGGTTTTCTACATTAACATAATAC
1 AATATTATTATTAAACTAAATA-TTAAAATAAGATTATCTTGGGTTTTCTACATTAACATAATAC
76833703 ATTA
65 ATTA
* * * *
76833707 AATATTATTGTTAAACTAAATATTAAAATAATATTATCTTGGGTTTTCTATATTAATATAATACA
1 AATATTATTATTAAACTAAATATTAAAATAAGATTATCTTGGGTTTTCTACATTAACATAATACA
76833772 TTA
66 TTA
*
76833775 AATATTATTTTTAAACTAAATATTAA
1 AATATTATTATTAAACTAAATATTAA
76833801 TATTAAAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
68 81 0.96
69 3 0.04
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (68 bp):
AATATTATTATTAAACTAAATATTAAAATAAGATTATCTTGGGTTTTCTACATTAACATAATACA
TTA
Found at i:76833806 original size:18 final size:18
Alignment explanation
Indices: 76833773--76833807 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76833763 TATAATACAT
* *
76833773 TAAATATTATTTTTAAAC
1 TAAATATTAATATTAAAC
76833791 TAAATATTAATATTAAA
1 TAAATATTAATATTAAA
76833808 AATTAATTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATATTAATATTAAAC
Found at i:76842488 original size:13 final size:13
Alignment explanation
Indices: 76842470--76842495 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76842460 ATTAACATAG
76842470 CACATTTTATATT
1 CACATTTTATATT
76842483 CACATTTTATATT
1 CACATTTTATATT
76842496 TTACACTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
CACATTTTATATT
Found at i:76844970 original size:11 final size:11
Alignment explanation
Indices: 76844954--76844984 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
76844944 GGACACACGA
76844954 CTGTGTCCAAC
1 CTGTGTCCAAC
76844965 CTGTGTCCAAC
1 CTGTGTCCAAC
76844976 CTGTGTCCA
1 CTGTGTCCA
76844985 TACCAGTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.35, G:0.19, T:0.29
Consensus pattern (11 bp):
CTGTGTCCAAC
Found at i:76848901 original size:21 final size:20
Alignment explanation
Indices: 76848855--76848925 Score: 81
Period size: 21 Copynumber: 3.5 Consensus size: 20
76848845 CAAATATGCC
*
76848855 AACAGAAGCT-TAAAAGCTA
1 AACAGAAGCTCTAAGAGCTA
* *
76848874 AATAGAAGCTCATAAGAGCTG
1 AACAGAAGCTC-TAAGAGCTA
76848895 AACAGAAGCTCGTAAGAGCTA
1 AACAGAAGCTC-TAAGAGCTA
*
76848916 AACAAAAGCT
1 AACAGAAGCT
76848926 AAACAGAAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.21
21 34 0.79
ACGTcount: A:0.48, C:0.17, G:0.20, T:0.15
Consensus pattern (20 bp):
AACAGAAGCTCTAAGAGCTA
Found at i:76848934 original size:53 final size:53
Alignment explanation
Indices: 76848866--76848975 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 53
76848856 ACAGAAGCTT
* * * *
76848866 AAAAGCTAAATAGAAGCTCATAAGAGCTGAACAGAAGCTCGTAAGAGCTAAAC
1 AAAAGCTAAACAGAAGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAAC
* * *
76848919 AAAAGCTAAACAGAAGCTCATAAGAACTTAAAAGAAGCTCATAAGAGTTGAAC
1 AAAAGCTAAACAGAAGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAAC
76848972 AAAA
1 AAAA
76848976 AGTAAAACAC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (53 bp):
AAAAGCTAAACAGAAGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAAC
Found at i:76850514 original size:22 final size:22
Alignment explanation
Indices: 76850475--76850553 Score: 88
Period size: 24 Copynumber: 3.5 Consensus size: 22
76850465 TAGCTCGTAT
*
76850475 GAGCTTATTGTTTCAGCTCAGA-A
1 GAGCTTACTG-TTCAGCTCA-ATA
76850498 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
*
76850520 GAGCTTACCGTTTTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
*
76850544 GGGCTTACTG
1 GAGCTTACTG
76850554 GCCATGTCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.37
23 11 0.22
24 19 0.39
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:76851684 original size:24 final size:24
Alignment explanation
Indices: 76851652--76851699 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
76851642 GCCACGACTT
76851652 AGACACACGGGCGTGTCTAAAGCC
1 AGACACACGGGCGTGTCTAAAGCC
*
76851676 AGACACACGTGCGTGTCTAAAGCC
1 AGACACACGGGCGTGTCTAAAGCC
76851700 GTGTGAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (24 bp):
AGACACACGGGCGTGTCTAAAGCC
Found at i:76860508 original size:22 final size:22
Alignment explanation
Indices: 76860483--76860539 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
76860473 AGCTCGCAAA
76860483 AGCTTATTGTTCAGCTCAATAG
1 AGCTTATTGTTCAGCTCAATAG
76860505 AGCTTACCGTT-TTCAGCTCAATAG
1 AGCTTA---TTGTTCAGCTCAATAG
*
76860529 AGCTTACTGTT
1 AGCTTATTGTT
76860540 ATCAACTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 8 0.27
24 19 0.63
25 2 0.07
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (22 bp):
AGCTTATTGTTCAGCTCAATAG
Found at i:76860548 original size:24 final size:24
Alignment explanation
Indices: 76860497--76860562 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
76860487 TATTGTTCAG
* * *
76860497 CTCAATAGAGCTTACCGTTTTCAG
1 CTCAATAGAGCTTACTGTTATCAA
76860521 CTCAATAGAGCTTACTGTTATCAA
1 CTCAATAGAGCTTACTGTTATCAA
76860545 CTC-ATGAAGAGCTTACTG
1 CTCAAT--AGAGCTTACTG
76860563 GCCATGTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.05
24 24 0.65
25 11 0.30
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (24 bp):
CTCAATAGAGCTTACTGTTATCAA
Found at i:76861103 original size:18 final size:18
Alignment explanation
Indices: 76861056--76861095 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
76861046 GCTAGAGTTT
76861056 ATGAAAGATTATGAGCTG
1 ATGAAAGATTATGAGCTG
*
76861074 TTGAAAGATTATGAGCTG
1 ATGAAAGATTATGAGCTG
76861092 ATGA
1 ATGA
76861096 TTGATTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.28, T:0.30
Consensus pattern (18 bp):
ATGAAAGATTATGAGCTG
Found at i:76869485 original size:22 final size:22
Alignment explanation
Indices: 76869460--76869516 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
76869450 AGCTCGCAAA
76869460 AGCTTATTGTTCAGCTCAATAG
1 AGCTTATTGTTCAGCTCAATAG
76869482 AGCTTACCGTT-TTCAGCTCAATAG
1 AGCTTA---TTGTTCAGCTCAATAG
*
76869506 AGCTTACTGTT
1 AGCTTATTGTT
76869517 ATCAACTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 8 0.27
24 19 0.63
25 2 0.07
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (22 bp):
AGCTTATTGTTCAGCTCAATAG
Found at i:76869525 original size:24 final size:24
Alignment explanation
Indices: 76869474--76869539 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
76869464 TATTGTTCAG
* * *
76869474 CTCAATAGAGCTTACCGTTTTCAG
1 CTCAATAGAGCTTACTGTTATCAA
76869498 CTCAATAGAGCTTACTGTTATCAA
1 CTCAATAGAGCTTACTGTTATCAA
76869522 CTC-ATGAAGAGCTTACTG
1 CTCAAT--AGAGCTTACTG
76869540 GCCATGTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.05
24 24 0.65
25 11 0.30
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (24 bp):
CTCAATAGAGCTTACTGTTATCAA
Found at i:76870080 original size:18 final size:18
Alignment explanation
Indices: 76870033--76870072 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
76870023 GCTAGAGTTT
76870033 ATGAAAGATTATGAGCTG
1 ATGAAAGATTATGAGCTG
*
76870051 TTGAAAGATTATGAGCTG
1 ATGAAAGATTATGAGCTG
76870069 ATGA
1 ATGA
76870073 TTGATTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.28, T:0.30
Consensus pattern (18 bp):
ATGAAAGATTATGAGCTG
Found at i:76875819 original size:47 final size:48
Alignment explanation
Indices: 76875757--76875931 Score: 157
Period size: 47 Copynumber: 3.7 Consensus size: 48
76875747 TTATGAGATC
* *
76875757 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACGA-GAG-
1 CAGTCTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGACGATG-GT
*
76875804 CTAGTCTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGATGGT
1 C-AGTCTAAGACCATGTCTGGGACATGGCATCGGCTATGAGACGATGGT
* * * * * * *
76875851 CAGTGTAAGATCATGTCTGGGACATGGCATCGACT-TGATA-TATAAGC
1 CAGTCTAAGACCATGTCTGGGACATGGCATCGGCTATGAGACGAT-GGT
* *
76875898 CAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 CAGTCTAAGACCATGTCTGGGACATGGCATCGGC
76875932 ACCTTACCCA
Statistics
Matches: 109, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
46 26 0.24
47 67 0.61
48 16 0.15
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
CAGTCTAAGACCATGTCTGGGACATGGCATCGGCTATGAGACGATGGT
Found at i:76875874 original size:94 final size:94
Alignment explanation
Indices: 76875709--76875882 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 94
76875699 GTTATTGTTG
* * *
76875709 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCACATTATGAGATCCAGTGTAAGACCATGTC
1 GCTAGTCTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGATCCAGTGTAAGACCATGTC
76875774 TAGGACATGGCATCGGCATTGAGACGAGA
66 TAGGACATGGCATCGGCATTGAGACGAGA
* * * * *
76875803 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATGGT-CAGTGTAAGATCATG
1 GCTAGTCTAAGACATGTCTAGGACATGCATCGGCCA-CATGATGA-GATCCAGTGTAAGACCATG
*
76875866 TCTGGGACATGGCATCG
64 TCTAGGACATGGCATCG
76875883 ACTTGATATA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 66 0.96
95 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
GCTAGTCTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGATCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCATTGAGACGAGA
Found at i:76875913 original size:94 final size:95
Alignment explanation
Indices: 76875757--76875931 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 95
76875747 TTATGAGATC
* * *
76875757 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTCTAAGACATGTCT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAAAGCCAGTCTAAGACATGTCT
76875822 GGGACAT-GCATCGGCTATGAGATGATGGT
66 GGGACATGGCATCGGCTATGAGATGATGGT
* * * * *
76875851 CAGTGTAAGATCATGTCTGGGACATGGCATCGAC-TTGATA-TATAAGCCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGA-AAGCCAGTCTAAGA-CATGT
*
76875914 TTGGGACATGGCATCGGC
64 CTGGGACATGGCATCGGC
76875932 ACCTTACCCA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
92 1 0.01
93 16 0.23
94 44 0.64
95 8 0.12
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAAAGCCAGTCTAAGACATGTCT
GGGACATGGCATCGGCTATGAGATGATGGT
Found at i:76879526 original size:46 final size:45
Alignment explanation
Indices: 76879382--76879551 Score: 186
Period size: 47 Copynumber: 3.7 Consensus size: 45
76879372 ATTGTTGGCT
* * *
76879382 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCAGA-GATGAGAG-C
*
76879428 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--GAGATGAGAGC
*
76879475 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGC-A-GAGATGAGAG-C
76879522 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
76879552 AGGACCTTAC
Statistics
Matches: 108, Mismatches: 7, Indels: 16
0.82 0.05 0.12
Matches are distributed among these distances:
46 34 0.31
47 48 0.44
48 25 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGAGAGC
Found at i:76879540 original size:94 final size:94
Alignment explanation
Indices: 76879379--76879551 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 94
76879369 GTTATTGTTG
* *
76879379 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAGATGATGAGAGCCAGTGTAAGACCATGTC
76879444 TGGGACATGGCATCGGCATTGAGAAGAGA
66 TGGGACATGGCATCGGCATTGAGAAGAGA
* * * *
76879473 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-GATGATGAGAGCCAGTGTAAGACCATGT
76879537 CTGGGACATGGCATC
65 CTGGGACATGGCATC
76879552 AGGACCTTAC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 71 0.99
95 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAGATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGAAGAGA
Found at i:76894288 original size:94 final size:94
Alignment explanation
Indices: 76894127--76894447 Score: 346
Period size: 94 Copynumber: 3.4 Consensus size: 94
76894117 GGGTTATTGT
* * * * *
76894127 GAGCTAGTGCAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGAGAGCCAGTGTAAGACCAT
76894191 GTCTGGAACATGGCATCGGCATTGAGACAA
66 GTCTGG-ACATGGCATCGGCATTGAGACAA
*
76894221 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGTGAAGTA-AGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAG-AGAGCCAGTGTAAGACCA
* ** * *
76894284 TGTCTGGGACATGGCATTGGCACGGATATGCGA
65 TGTCT-GGACATGGCATCGGCATTGAGA--CAA
* * *
76894317 GAGCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCCTCAATGACGATAGTCAGTGTAAGAC
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGA-CCTC-ATGAAGAGAGCCAGTGTAAGAC
** *
76894381 CATGTCTAGGACATGGCATCAAC-TTGAGACAT
63 CATGTCT-GGACATGGCATCGGCATTGAGACAA
* *
76894413 GAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
76894448 AGCATTACAC
Statistics
Matches: 192, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
94 76 0.40
95 3 0.02
96 48 0.25
97 17 0.09
98 12 0.06
99 36 0.19
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (94 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGAGAGCCAGTGTAAGACCAT
GTCTGGACATGGCATCGGCATTGAGACAA
Found at i:76894394 original size:49 final size:48
Alignment explanation
Indices: 76894126--76894450 Score: 231
Period size: 47 Copynumber: 6.8 Consensus size: 48
76894116 TGGGTTATTG
* * * * ** *
76894126 TGAGCTAGTGCAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGA-CA
* * * **
76894173 -GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGACA
* * **
76894220 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GACCTCGTGA-A
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTCAAGACA
* ** **
76894265 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACGGATATG-CGA
1 -TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCA-A-GAC-A
* *
76894317 -GAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAA-GAC-A
* * * **
76894366 T-AGTCAGTGTAAGACCATGTCTAGGACATGGCATCA-ACTTGAGACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGACA
*
76894412 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
76894451 ATTACACCTT
Statistics
Matches: 220, Mismatches: 41, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 36 0.16
47 76 0.35
48 33 0.15
49 38 0.17
50 33 0.15
51 1 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGACA
Found at i:76894430 original size:146 final size:144
Alignment explanation
Indices: 76894171--76894446 Score: 351
Period size: 146 Copynumber: 1.9 Consensus size: 144
76894161 GCCACATTAT
* * **
76894171 GAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACAAGAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCAGCATCAAGACAAGAGCTAGTGTAAGAC
* * * *
76894236 ATGTCTGGGACATGCATCGACCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
66 ATGTCTAGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
76894301 TGGCACGGATATGC
131 TGGCACGGATATGC
* * * * *
76894315 GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACGATAG-TCAGTGTAAG
1 GAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCAGCATCAA-GACAAGAGCT-AGTGTAAG
* *
76894379 ACCATGTCTAGGACATGGCATC-AACTTGAGACA-TGAGCCAATGTAAGACCATGTCTGGGACAT
64 A-CATGTCTAGGACAT-GCATCGAACTCGAGA-AGTAAGCCAATGTAAGACCATGTCTGGGACAT
76894442 GGCAT
126 GGCAT
76894447 CAGCATTACA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 39 0.35
145 15 0.13
146 52 0.46
147 6 0.05
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (144 bp):
GAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCAGCATCAAGACAAGAGCTAGTGTAAGAC
ATGTCTAGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
TGGCACGGATATGC
Found at i:76894677 original size:22 final size:22
Alignment explanation
Indices: 76894652--76894693 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
76894642 GTGCTTATGC
76894652 CTTCTTTTGTATTATGAGCATG
1 CTTCTTTTGTATTATGAGCATG
76894674 CTTCTTTTGTATTATGAGCA
1 CTTCTTTTGTATTATGAGCA
76894694 CGTTGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (22 bp):
CTTCTTTTGTATTATGAGCATG
Found at i:76901059 original size:13 final size:13
Alignment explanation
Indices: 76901041--76901065 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76901031 GTAAGTGATT
76901041 TTGATGATTTTTC
1 TTGATGATTTTTC
76901054 TTGATGATTTTT
1 TTGATGATTTTT
76901066 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:76901799 original size:47 final size:48
Alignment explanation
Indices: 76901734--76902054 Score: 254
Period size: 47 Copynumber: 6.7 Consensus size: 48
76901724 GGGTTATTGT
* * * * *
76901734 GAGCTAGTGCAAGA-CATGTCTAGGACAT-GCATCGGCCATATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGACGA
* *
76901780 GAGCCAGTGTAAGACCATGTCCGGAACATGGCATCGG-CAT-TGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAT--GACGA
* * * *
76901828 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACC-TCGTGAAGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATGACG-A
*
76901875 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACGGATATG-CGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C--ATATGACGA
* * *
76901924 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCC-TCAATGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--ATGACGA
* * * ** *
76901973 TAGTCAGTGTAAGACCATGTCTTGGACATGGCATC-AACTTGA-GAC-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATGACGA
*
76902019 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
76902055 AGCATTACAC
Statistics
Matches: 222, Mismatches: 33, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
46 37 0.17
47 76 0.34
48 35 0.16
49 37 0.17
50 34 0.15
51 2 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGACGA
Found at i:76901903 original size:94 final size:95
Alignment explanation
Indices: 76901734--76902054 Score: 332
Period size: 94 Copynumber: 3.4 Consensus size: 95
76901724 GGGTTATTGT
* * * * *
76901734 GAGCTAGTGCAAGA-CATGTCTAGGACATGCATCGGCCAT-ATTATGAGAGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACC-TCATGAAGAGAGCCAGTGTAAGACCA
* *
76901797 TGTCCGGAACATGGCATCGGCATTGAGACGA
65 TGTCTGGGACATGGCATCGGCATTGAGACGA
*
76901828 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGTGAAGTA-AGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAG-AGAGCCAGTGTAAGACCA
* ** *
76901891 TGTCTGGGACATGGCATTGGCACGGATATGCGA
65 TGTCTGGGACATGGCATCGGCATTGAGA--CGA
* * *
76901924 GAGCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCCTCAATGACGATAGTCAGTGTAAGAC
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGA-CCTC-ATGAAGAGAGCCAGTGTAAGAC
* **
76901988 CATGTCTTGGACATGGCATCAAC-TTGAGAC-A
63 CATGTCTGGGACATGGCATCGGCATTGAGACGA
* *
76902019 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
76902055 AGCATTACAC
Statistics
Matches: 192, Mismatches: 24, Indels: 20
0.81 0.10 0.08
Matches are distributed among these distances:
93 1 0.01
94 75 0.39
95 2 0.01
96 49 0.26
97 17 0.09
98 12 0.06
99 36 0.19
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (95 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCATTGAGACGA
Found at i:76902034 original size:146 final size:144
Alignment explanation
Indices: 76901778--76902053 Score: 351
Period size: 146 Copynumber: 1.9 Consensus size: 144
76901768 GCCATATTAT
* * **
76901778 GAGAGCCAGTGTAAGACCATGTCCGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCCGGAACATGACATCAGCATCAAGACGAGAGCTAGTGTAAGAC
* * *
76901843 ATGTCTGGGACATGCATCGACCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
66 ATGTCTGGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
76901908 TGGCACGGATATGC
131 TGGCACGGATATGC
* * * * *
76901922 GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACGATAG-TCAGTGTAAG
1 GAGAGCCAGTGTAAGACCATGTCCGGAACATGACATCAGCATCAA-GACGAGAGCT-AGTGTAAG
* * *
76901986 ACCATGTCTTGGACATGGCATC-AACTTGAGACA-TGAGCCAATGTAAGACCATGTCTGGGACAT
64 A-CATGTCTGGGACAT-GCATCGAACTCGAGA-AGTAAGCCAATGTAAGACCATGTCTGGGACAT
76902049 GGCAT
126 GGCAT
76902054 CAGCATTACA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 38 0.34
145 16 0.14
146 52 0.46
147 6 0.05
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (144 bp):
GAGAGCCAGTGTAAGACCATGTCCGGAACATGACATCAGCATCAAGACGAGAGCTAGTGTAAGAC
ATGTCTGGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
TGGCACGGATATGC
Found at i:76902283 original size:22 final size:22
Alignment explanation
Indices: 76902258--76902299 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
76902248 GTGCTTATGC
76902258 CTTCTTTTGTATTATGAGCATG
1 CTTCTTTTGTATTATGAGCATG
76902280 CTTCTTTTGTATTATGAGCA
1 CTTCTTTTGTATTATGAGCA
76902300 CGTTGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (22 bp):
CTTCTTTTGTATTATGAGCATG
Found at i:76908025 original size:33 final size:34
Alignment explanation
Indices: 76907972--76908297 Score: 190
Period size: 33 Copynumber: 9.7 Consensus size: 34
76907962 CCTTATATGT
76907972 AAGACCATAGCTGGGCTATGGCA-TATTAATGAA
1 AAGACCATAGCTGGGCTATGGCACTATTAATGAA
* * * * *
76908005 AAGATCATAACTGGGTTATGGCACT-TTAAACGTA
1 AAGACCATAGCTGGGCTATGGCACTATT-AATGAA
* * * * * *
76908039 AA-ACCATGGTTGGACTATGACAGTAATTATATG-T
1 AAGACCATAGCTGGGCTATGGCACT-ATTA-ATGAA
76908073 AAGACCATAGCTGGGCTATGGCA-TATTAATGAA
1 AAGACCATAGCTGGGCTATGGCACTATTAATGAA
* * * * *
76908106 AAGATCATAACTGGGTTATGGCACT-TTAAACGTA
1 AAGACCATAGCTGGGCTATGGCACTATT-AATGAA
* * * * * *
76908140 AA-ACCATGGTTGGACTATGACAGTAATTATATG-T
1 AAGACCATAGCTGGGCTATGGCACT-ATTA-ATGAA
76908174 AAGACCATAGCTGGGCTATGGCA-TATTAATGAA
1 AAGACCATAGCTGGGCTATGGCACTATTAATGAA
* * * * *
76908207 AAGATCATAACTGGGTTATGGCACT-TTAAACGTA
1 AAGACCATAGCTGGGCTATGGCACTATT-AATGAA
* * * * * *
76908241 AA-ACCATGGTTGGACTATGACAGTAATTATATG-T
1 AAGACCATAGCTGGGCTATGGCACT-ATTA-ATGAA
76908275 AAGACCATAGCTGGGCTATGGCA
1 AAGACCATAGCTGGGCTATGGCA
76908298 TTCTGACAAT
Statistics
Matches: 214, Mismatches: 59, Indels: 38
0.69 0.19 0.12
Matches are distributed among these distances:
32 6 0.03
33 116 0.54
34 32 0.15
35 60 0.28
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (34 bp):
AAGACCATAGCTGGGCTATGGCACTATTAATGAA
Found at i:76908350 original size:101 final size:101
Alignment explanation
Indices: 76907940--76908332 Score: 675
Period size: 101 Copynumber: 3.9 Consensus size: 101
76907930 GATGGATAAG
* **
76907940 ACCATGGTTGGACCATGGA-AGTCCTTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGA
1 ACCATGGTTGGACTAT-GACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGA
76908004 AAAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
65 AAAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
76908041 ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAA
1 ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAA
76908106 AAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
66 AAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
76908142 ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAA
1 ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAA
76908207 AAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
66 AAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
* *
76908243 ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCAT-TCTGA-CA
1 ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATAT-TAATGA
* *
76908306 ATAAGACCATAACTAGGTTATGGCACT
65 A-AAGATCATAACTGGGTTATGGCACT
76908333 ACGAATGTAA
Statistics
Matches: 282, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
100 5 0.02
101 277 0.98
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (101 bp):
ACCATGGTTGGACTATGACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAA
AAGATCATAACTGGGTTATGGCACTTTAAACGTAAA
Found at i:76908654 original size:17 final size:16
Alignment explanation
Indices: 76908622--76908655 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76908612 CATGAAAATG
*
76908622 AATGAAATATTGATAT
1 AATGAAATAATGATAT
76908638 AATGAAATGAATGATAT
1 AATGAAAT-AATGATAT
76908655 A
1 A
76908656 TGTTTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
AATGAAATAATGATAT
Found at i:76912466 original size:47 final size:47
Alignment explanation
Indices: 76912403--76912753 Score: 522
Period size: 47 Copynumber: 7.4 Consensus size: 47
76912393 CCCTTCGGGA
* *
76912403 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
76912450 ATTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76912497 CTTATCTCATATATACACGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76912544 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76912591 CTTATCTCATATATACACGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76912638 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
76912685 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76912734 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
76912754 GTACGTCAAT
Statistics
Matches: 277, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 232 0.84
49 45 0.16
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:76912482 original size:25 final size:24
Alignment explanation
Indices: 76912406--76912485 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
76912396 TTCGGGACTT
*
76912406 ATCACATTTATACACTTTCACATCC
1 ATCACA-TTATACACTTTCACATTC
** * *
76912431 ATCACATT-GGC-CATTCGGCATT-
1 ATCACATTATACACTTTC-ACATTC
76912453 ATCACATATATACACTTTCACATTC
1 ATCACAT-TATACACTTTCACATTC
76912478 ATCACATT
1 ATCACATT
76912486 GGCCATTAGG
Statistics
Matches: 41, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 8 0.20
25 17 0.41
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (24 bp):
ATCACATTATACACTTTCACATTC
Found at i:76916571 original size:43 final size:41
Alignment explanation
Indices: 76916408--76916572 Score: 109
Period size: 43 Copynumber: 3.9 Consensus size: 41
76916398 AGCTCATACA
* ***
76916408 ATGCCAACGTCCCTGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATC-AA-ATCG
* * *
76916451 ATGCC-ACTGTCCAAGACAG-AGTCTTACACAAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACAAAATCAAAT-CG
*** * * * * *
76916493 ATTTTAATGTCCCAAACATCGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAATCA-AA-TCG
76916537 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCA
76916573 CATATCAAAA
Statistics
Matches: 89, Mismatches: 25, Indels: 16
0.68 0.19 0.12
Matches are distributed among these distances:
41 2 0.02
42 23 0.26
43 37 0.42
44 26 0.29
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATCG
Found at i:76921687 original size:33 final size:33
Alignment explanation
Indices: 76921604--76921915 Score: 238
Period size: 33 Copynumber: 9.3 Consensus size: 33
76921594 AATTGACGGA
* * * *
76921604 TAAGACCATAGTTGGACCATGGCAGTGTTTATATG
1 TAAGACCATAGTTGGGCTATGGCACT-ATTA-ATG
76921639 TAAGACCATAGTTGGGCTATGGCA-TATTAATG
1 TAAGACCATAGTTGGGCTATGGCACTATTAATG
* * * *
76921671 AAAAGACCATAATTGGGTTATGGCACT-TTGAACG
1 -TAAGACCATAGTTGGGCTATGGCACTATT-AATG
* * * *
76921705 TAAGACCATGGTTGGACCATGGCAGTAATTATATG
1 TAAGACCATAGTTGGGCTATGGCACT-ATTA-ATG
*
76921740 TAAGACCATAGCTGGGCTATGGCA-TATTAATG
1 TAAGACCATAGTTGGGCTATGGCACTATTAATG
* * * *
76921772 AAAAGACCATAATTGGGTTATGGCACT-TTGAACG
1 -TAAGACCATAGTTGGGCTATGGCACTATT-AATG
* * * *
76921806 TAAGACCATGGTTGGACCATGGCAGTAATTATATG
1 TAAGACCATAGTTGGGCTATGGCACT-ATTA-ATG
*
76921841 TAAGACCATAGCTGGGCTATGGCA-TATTAATG
1 TAAGACCATAGTTGGGCTATGGCACTATTAATG
* ** * **
76921873 AAAAGACCATAACTGGGTTATGGCACTACGAATG
1 -TAAGACCATAGTTGGGCTATGGCACTATTAATG
76921907 TAAGACCAT
1 TAAGACCAT
76921916 GACAAGGCCA
Statistics
Matches: 221, Mismatches: 42, Indels: 30
0.75 0.14 0.10
Matches are distributed among these distances:
32 9 0.04
33 123 0.56
34 19 0.09
35 70 0.32
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (33 bp):
TAAGACCATAGTTGGGCTATGGCACTATTAATG
Found at i:76921746 original size:68 final size:66
Alignment explanation
Indices: 76921638--76921915 Score: 163
Period size: 68 Copynumber: 4.2 Consensus size: 66
76921628 GTGTTTATAT
* * * *
76921638 GTAAGACCATAGTTGGGCTATGGCATATTAATGAAAAGACCATAATTGGGTTATGGCACTTTGAA
1 GTAAGACCATAGTTGGACCATGGCATATTAATGAAAAGACCATAACTGGGCTATGGCACTTTGAA
76921703 C
66 C
* * *
76921704 GTAAGACCATGGTTGGACCATGGCAGTAATTATATG-TAAGACCATAGCTGGGCTATGGCA-TAT
1 GTAAGACCATAGTTGGACCATGGCA-T-ATTA-ATGAAAAGACCATAACTGGGCTATGGCACT-T
*
76921767 T-AAT
62 TGAAC
* * *** * * *** * * *
76921771 GAAAAGACCATAATTGGGTTATGGCACT-TTGAACG-TAAGACCATGGTTGGACCATGGCAGTAA
1 G-TAAGACCATAGTTGGACCATGGCA-TATT-AATGAAAAGACCATAACTGGGCTATGGCACT--
*
76921834 TT-ATAT
61 TTGA-AC
* * * * **
76921840 GTAAGACCATAGCTGGGCTATGGCATATTAATGAAAAGACCATAACTGGGTTATGGCACTACGAA
1 GTAAGACCATAGTTGGACCATGGCATATTAATGAAAAGACCATAACTGGGCTATGGCACTTTGAA
*
76921905 T
66 C
76921906 GTAAGACCAT
1 GTAAGACCAT
76921916 GACAAGGCCA
Statistics
Matches: 165, Mismatches: 35, Indels: 24
0.74 0.16 0.11
Matches are distributed among these distances:
66 58 0.35
67 12 0.07
68 89 0.54
69 6 0.04
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (66 bp):
GTAAGACCATAGTTGGACCATGGCATATTAATGAAAAGACCATAACTGGGCTATGGCACTTTGAA
C
Found at i:76921930 original size:101 final size:101
Alignment explanation
Indices: 76921604--76921916 Score: 554
Period size: 101 Copynumber: 3.1 Consensus size: 101
76921594 AATTGACGGA
* ** *
76921604 TAAGACCATAGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
76921669 TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
66 TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
76921705 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
76921770 TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
66 TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
76921806 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
* ** *
76921871 TGAAAAGACCATAACTGGGTTATGGCACTACGAATG
66 TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
76921907 TAAGACCATG
1 TAAGACCATG
76921917 ACAAGGCCAT
Statistics
Matches: 204, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 204 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
Found at i:76926989 original size:14 final size:14
Alignment explanation
Indices: 76926972--76927018 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
76926962 TATAATGTGT
76926972 TCAATATTTAACTA
1 TCAATATTTAACTA
* *
76926986 TCAA-ATTAAATTAA
1 TCAATATTTAACT-A
76927000 TTCAATATTTAACTA
1 -TCAATATTTAACTA
76927015 TCAA
1 TCAA
76927019 CTATAGGGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 6 0.23
14 9 0.35
15 5 0.19
16 6 0.23
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TCAATATTTAACTA
Found at i:76930088 original size:40 final size:39
Alignment explanation
Indices: 76930005--76930093 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 39
76929995 TTGAGCAAGA
*
76930005 ACTAAGTGTGCGGTTCGAAATAACTTCGGCTATAAATGAC
1 ACTAAGTGTACGGTTCGAAATAACTTCGGCTAT-AATGAC
* *
76930045 ACTAAGTGTACGAGTT-GGAATAGCTTCGGCTAT-ATGAGGC
1 ACTAAGTGTACG-GTTCGAAATAACTTCGGCTATAATGA--C
76930085 ACTAAGTGT
1 ACTAAGTGT
76930094 GCGATACCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
38 4 0.09
40 36 0.84
41 3 0.07
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (39 bp):
ACTAAGTGTACGGTTCGAAATAACTTCGGCTATAATGAC
Found at i:76958285 original size:19 final size:19
Alignment explanation
Indices: 76958263--76958331 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 19
76958253 AAAACATAAC
76958263 AAAATTTATAAAAATTATA
1 AAAATTTATAAAAATTATA
* * *
76958282 AAAAATCATTAAAATTAT-
1 AAAATTTATAAAAATTATA
* *
76958300 ACAATTT-TTAAAATTATTA
1 AAAATTTATAAAAATTA-TA
* *
76958319 GAAATTAATAAAA
1 AAAATTTATAAAA
76958332 TAAAAATAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
17 9 0.24
18 5 0.14
19 19 0.51
20 4 0.11
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAATTTATAAAAATTATA
Found at i:76958286 original size:20 final size:20
Alignment explanation
Indices: 76958246--76958300 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
76958236 TTTGGACTAG
*
76958246 AATTATAAAAA-CATAACAA
1 AATTATAAAAATTATAACAA
76958265 AATTTATAAAAATTATAA-AA
1 AA-TTATAAAAATTATAACAA
* *
76958285 AATCATTAAAATTATA
1 AATTATAAAAATTATA
76958301 CAATTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 14 0.45
20 13 0.42
21 4 0.13
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
AATTATAAAAATTATAACAA
Found at i:76958491 original size:33 final size:34
Alignment explanation
Indices: 76958454--76958534 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 34
76958444 AATTTTATGG
*
76958454 TTTTTAATTAATTTTTAAT-AATTA-TTTTTATAT
1 TTTTTAATT-ATTTTTAATAAATTATTTTTTATAA
* ** *
76958487 TTTTTTATGGTTTTTAGTAAATTATTTTTTATAA
1 TTTTTAATTATTTTTAATAAATTATTTTTTATAA
*
76958521 ATTTTAATTATTTT
1 TTTTTAATTATTTT
76958535 AATGATATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
32 7 0.19
33 12 0.32
34 18 0.49
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (34 bp):
TTTTTAATTATTTTTAATAAATTATTTTTTATAA
Found at i:76963975 original size:26 final size:26
Alignment explanation
Indices: 76963946--76963996 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
76963936 ACCAATATCA
76963946 GTATCGCAGCAAAGCTACCAGTAATG
1 GTATCGCAGCAAAGCTACCAGTAATG
*
76963972 GTATCGCAGCAAAGCTGCCAGTAAT
1 GTATCGCAGCAAAGCTACCAGTAAT
76963997 CAGTATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (26 bp):
GTATCGCAGCAAAGCTACCAGTAATG
Found at i:76966829 original size:48 final size:48
Alignment explanation
Indices: 76966721--76967197 Score: 434
Period size: 48 Copynumber: 9.9 Consensus size: 48
76966711 AAAGGGTAAG
* * * * * * * *
76966721 ATGCTGATGCTATGTTCCAAACATGGTTTTACACTAGCGCACATGTCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
76966769 AGGCCGATGCCATGTCCCAGACATGGTCTTATACTAACTCTCCTATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * ** * * *
76966817 ATGTCAATGCCATGTTCCAAACATGGTCTTGTACCAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
76966865 AGGCCGATGCCATGTCCCAAACATGGTTTTACACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * * * *
76966913 ATACCGATGTCATGTTCCAAATATGGTCTTACACTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
76966961 AGGCTGATGCCATGTCTCAGACATGGTCTTATACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* ** * * * * * *
76967009 AAGTTGATGTCATGTTCCAAACATAGTCTTACACTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
76967057 AGGCCCATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
76967105 ATGCCGATG-CATTGTCCCAGACATAGTCTTACACTAGCTCTCATATCA
1 ATGCCGATGCCA-TGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
76967153 ATACCGATGCCATGTTCCAAAGATGGTCTTACACTAACTCACATA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA
76967198 ACCCTAGTAT
Statistics
Matches: 338, Mismatches: 89, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
47 2 0.01
48 334 0.99
49 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
Found at i:76966906 original size:96 final size:96
Alignment explanation
Indices: 76966721--76967197 Score: 551
Period size: 96 Copynumber: 5.0 Consensus size: 96
76966711 AAAGGGTAAG
* * * * *
76966721 ATGCTGATGCTATGTTCCAAACATGGTTTTACACTAGCGCACATGTCGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
* * *
76966786 CAGACATGGTCTTATACTAACTCTCCTATCA
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* * ** *
76966817 ATGTCAATGCCATGTTCCAAACATGGTCTTGTACCAGCTCACATATCGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
* *
76966882 CAAACATGGTTTTACACTAGCTCTCATATCA
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* * * * * *
76966913 ATACCGATGTCATGTTCCAAATATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
*
76966978 CAGACATGGTCTTATACTAGCTCTCATATCA
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* ** * * * *
76967009 AAGTTGATGTCATGTTCCAAACATAGTCTTACACTGGCTCACATATCGAGGCCCATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
* *
76967074 CAGACATGGTCTCACACTAGCTCTCATATCG
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* * * * * ** *
76967105 ATGCCGATG-CATTGTCCCAGACATAGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTT
1 ATGCCGATGCCA-TGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTC
* * * *
76967169 CCAAAGATGGTCTTACACTAACTCACATA
65 CCAGACATGGTCTTACACTAGCTCTCATA
76967198 ACCCTAGTAT
Statistics
Matches: 322, Mismatches: 58, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
95 2 0.01
96 320 0.99
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTCATATCA
Found at i:76967254 original size:48 final size:48
Alignment explanation
Indices: 76967193--76967288 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
76967183 ACACTAACTC
*
76967193 ACATAACCCTAGTATTACAGCATGGATATCTGATCTATTCTTATGGTT
1 ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
76967241 ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
1 ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
76967289 CAATAGGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (48 bp):
ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
Found at i:76968781 original size:25 final size:25
Alignment explanation
Indices: 76968753--76968808 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
76968743 AAGCTCCTTT
* *
76968753 GAGCTGAATAACGGTAAACTCATAC
1 GAGCTGAATAACAGTAAACTCATAA
* * *
76968778 GAGCTGAGTATCAGTAAGCTCATAA
1 GAGCTGAATAACAGTAAACTCATAA
76968803 GAGCTG
1 GAGCTG
76968809 GAATCGGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (25 bp):
GAGCTGAATAACAGTAAACTCATAA
Found at i:76969631 original size:21 final size:23
Alignment explanation
Indices: 76969606--76969651 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
76969596 TGGGCTACAC
76969606 AAAAT-AGAGAAAGAA-AGA-AGA
1 AAAATGAGAG-AAGAATAGAGAGA
76969627 AAAATGAGAGAAGAATAGAGAGA
1 AAAATGAGAGAAGAATAGAGAGA
76969650 AA
1 AA
76969652 GAAGGCTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.45
22 7 0.32
23 5 0.23
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.07
Consensus pattern (23 bp):
AAAATGAGAGAAGAATAGAGAGA
Found at i:76969928 original size:22 final size:22
Alignment explanation
Indices: 76969895--76969938 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
76969885 ATAATTTTAC
*
76969895 GGATTTAAAATTA-AGAGTTTG
1 GGATTTAAAATTACACAGTTTG
*
76969916 GGATGTTACAATTACACAGTTTG
1 GGAT-TTAAAATTACACAGTTTG
76969939 TTTGCACGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 7 0.37
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (22 bp):
GGATTTAAAATTACACAGTTTG
Found at i:76972187 original size:26 final size:25
Alignment explanation
Indices: 76972152--76972227 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 25
76972142 GCAGCTCTTA
*
76972152 TGAGCGTCCCGTTATATGGCTCTTCG
1 TGAGCTTCCCGTTA-ATGGCTCTTCG
* * * *
76972178 TGAGTTTCCCAATTAAAGGCTCTTTG
1 TGAGCTTCCC-GTTAATGGCTCTTCG
*
76972204 TGAGCTTCCTGATTAATGGCTCTT
1 TGAGCTTCCCG-TTAATGGCTCTT
76972228 TGGAGCTACT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 36 0.92
27 3 0.08
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (25 bp):
TGAGCTTCCCGTTAATGGCTCTTCG
Found at i:76972228 original size:26 final size:26
Alignment explanation
Indices: 76972167--76972234 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
76972157 GTCCCGTTAT
* *
76972167 ATGGCTCTTCGTGAGTTTCCCAATTA
1 ATGGCTCTTTGTGAGCTTCCCAATTA
* **
76972193 AAGGCTCTTTGTGAGCTTCCTGATTA
1 ATGGCTCTTTGTGAGCTTCCCAATTA
76972219 ATGGCTCTTTG-GAGCT
1 ATGGCTCTTTGTGAGCT
76972235 ACTCATTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 5 0.14
26 31 0.86
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCCCAATTA
Found at i:76972273 original size:24 final size:23
Alignment explanation
Indices: 76972246--76972291 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
76972236 CTCATTGTTA
76972246 GCTCGTATGAGCTTCCTGATTATG
1 GCTCGTATGAGCTTCCTG-TTATG
* *
76972270 GCTCTTATGAGTTTCCTGTTAT
1 GCTCGTATGAGCTTCCTGTTAT
76972292 ACAACCCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.43
Consensus pattern (23 bp):
GCTCGTATGAGCTTCCTGTTATG
Found at i:76977354 original size:68 final size:69
Alignment explanation
Indices: 76977245--76977386 Score: 205
Period size: 68 Copynumber: 2.1 Consensus size: 69
76977235 AATGGCATTG
* * * * * * *
76977245 TAATCAATTTGATCAATTATTTTAGCAGTAGTAACTAAATTAAAA-AATAAATGTGATCAAAATA
1 TAATCAATTTAATCAATTATTTTAACAATAATAACCAAATTAAAAGAAAAAAAGTGATCAAAATA
76977309 AAAA
66 AAAA
76977313 TAATCAATTTAATCAATTATTTTAACAATAATAACCAAATTAAAAGAAAAAAAGTGATCAAAATA
1 TAATCAATTTAATCAATTATTTTAACAATAATAACCAAATTAAAAGAAAAAAAGTGATCAAAATA
76977378 AAAA
66 AAAA
*
76977382 CAATC
1 TAATC
76977387 CACTTTGAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
68 40 0.62
69 25 0.38
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (69 bp):
TAATCAATTTAATCAATTATTTTAACAATAATAACCAAATTAAAAGAAAAAAAGTGATCAAAATA
AAAA
Found at i:76978894 original size:25 final size:28
Alignment explanation
Indices: 76978848--76978902 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 28
76978838 TCATACACAT
*
76978848 TTAAATAAATACCTCAATTTATTTTTATA
1 TTAAATAAATA-CTCAATTTATTTATATA
76978877 TTAAATAAATA-T-AA-TTATTTATATA
1 TTAAATAAATACTCAATTTATTTATATA
76978902 T
1 T
76978903 ATAATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 11 0.44
26 2 0.08
27 1 0.04
29 11 0.44
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.49
Consensus pattern (28 bp):
TTAAATAAATACTCAATTTATTTATATA
Found at i:76978896 original size:29 final size:29
Alignment explanation
Indices: 76978864--76978919 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
76978854 AAATACCTCA
* * *
76978864 ATTTATTTTTATATTAAATAAATATAATT
1 ATTTATATATATAATAAATAAATATAATT
*
76978893 ATTTATATATATAATATATAAATATAA
1 ATTTATATATATAATAAATAAATATAA
76978920 AATAATAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (29 bp):
ATTTATATATATAATAAATAAATATAATT
Found at i:76978929 original size:14 final size:15
Alignment explanation
Indices: 76978881--76978944 Score: 60
Period size: 15 Copynumber: 4.3 Consensus size: 15
76978871 TTTATATTAA
*
76978881 ATAAATAT-AATTAT
1 ATAAATATAAAATAT
* * *
76978895 TTATATATATAATAT
1 ATAAATATAAAATAT
76978910 ATAAATATAAAATA-
1 ATAAATATAAAATAT
*
76978924 ATAAATATAATAATTT
1 ATAAATATAA-AATAT
76978940 ATAAA
1 ATAAA
76978945 ATTTAAATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 16 0.41
15 18 0.46
16 5 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAAATATAAAATAT
Found at i:76989302 original size:49 final size:49
Alignment explanation
Indices: 76989175--76989304 Score: 188
Period size: 49 Copynumber: 2.7 Consensus size: 49
76989165 CATCAAAGTT
* * *
76989175 GATGCCATGTCCTAGACAGGTCTTACACTAACTTTCATATATCGATGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGATGCC
* * *
76989224 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATCTAACGATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGATGCC
* *
76989273 GATGCCATGTCCCAGAAAGGTATTACACTGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTGAC
76989305 ACACAACAAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGATGCC
Found at i:76989384 original size:48 final size:48
Alignment explanation
Indices: 76989330--76989443 Score: 192
Period size: 48 Copynumber: 2.4 Consensus size: 48
76989320 GCCATGTACC
* *
76989330 GACATGTCTTACACTAGCTTGTATATCTTGAGGCCGATGCATATCCCA
1 GACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATATCCCA
* *
76989378 GACATGTCTTACACTGGCTTGTATATCTCGAGGCCAATGCATGTCCCA
1 GACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATATCCCA
76989426 GACATGTCTTACACTAGC
1 GACATGTCTTACACTAGC
76989444 ACACATATCA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
GACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATATCCCA
Found at i:76990028 original size:20 final size:20
Alignment explanation
Indices: 76990003--76990041 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
76989993 ACAATTTCAA
76990003 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
76990023 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
76990042 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:76998032 original size:99 final size:99
Alignment explanation
Indices: 76997861--76998058 Score: 396
Period size: 99 Copynumber: 2.0 Consensus size: 99
76997851 TATAGCTCTA
76997861 ACCTCTACTCGGATTATCGGTGAGACCTTTAGCTCAGACGAAATCTCCACATGAAGTTATCGGGT
1 ACCTCTACTCGGATTATCGGTGAGACCTTTAGCTCAGACGAAATCTCCACATGAAGTTATCGGGT
76997926 CTTACCCGGACAAAATCTCCACACGTAGTCATCG
66 CTTACCCGGACAAAATCTCCACACGTAGTCATCG
76997960 ACCTCTACTCGGATTATCGGTGAGACCTTTAGCTCAGACGAAATCTCCACATGAAGTTATCGGGT
1 ACCTCTACTCGGATTATCGGTGAGACCTTTAGCTCAGACGAAATCTCCACATGAAGTTATCGGGT
76998025 CTTACCCGGACAAAATCTCCACACGTAGTCATCG
66 CTTACCCGGACAAAATCTCCACACGTAGTCATCG
76998059 GGTCTTACCC
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 99 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
ACCTCTACTCGGATTATCGGTGAGACCTTTAGCTCAGACGAAATCTCCACATGAAGTTATCGGGT
CTTACCCGGACAAAATCTCCACACGTAGTCATCG
Found at i:76998059 original size:37 final size:37
Alignment explanation
Indices: 76998000--76998093 Score: 152
Period size: 37 Copynumber: 2.5 Consensus size: 37
76997990 AGCTCAGACG
* * *
76998000 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76998037 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76998074 TAATCTCCACACGTAGTCAT
1 AAATCTCCACACGTAGTCAT
76998094 ATTTCCAAGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76998363 original size:47 final size:47
Alignment explanation
Indices: 76998306--76998492 Score: 239
Period size: 47 Copynumber: 3.9 Consensus size: 47
76998296 CGCATTAGCT
*
76998306 ATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTACCACATATATGCATGTTCACATTCATCACATTGGCC
* *
76998353 ATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTACCACATATATGCATGTTCACATTCATCACATTGGCC
* **
76998400 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTA-C-CAC--ATATATGCATGTTCACATTCATCACATTGGCC
* * * * *
76998451 ATTCGACCTTATCACACATACGCATGTTCACATCCATCACAT
1 ATTCGGCCTTACCACATATATGCATGTTCACATTCATCACAT
76998493 AAAATCCTAA
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
47 76 0.63
49 5 0.04
51 39 0.32
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
ATTCGGCCTTACCACATATATGCATGTTCACATTCATCACATTGGCC
Found at i:76998440 original size:98 final size:94
Alignment explanation
Indices: 76998306--76998492 Score: 275
Period size: 98 Copynumber: 1.9 Consensus size: 94
76998296 CGCATTAGCT
* * * *
76998306 ATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
1 ATTCGGCCTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACA
* *
76998371 TATGCATGTTCACATTCATCACATTGGCC
66 TACGCATGTTCACATCCATCACATTGGCC
*
76998400 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGACCTTATCA
1 ATTCGGCCTTA-C-CACATATAT-T-CAGGTTCACATTCATCACATTGGCCATTCGACCTTATCA
76998465 CACATACGCATGTTCACATCCATCACAT
62 CACATACGCATGTTCACATCCATCACAT
76998493 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
94 11 0.13
95 1 0.01
96 9 0.11
97 1 0.01
98 60 0.73
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (94 bp):
ATTCGGCCTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACA
TACGCATGTTCACATCCATCACATTGGCC
Found at i:77000804 original size:85 final size:85
Alignment explanation
Indices: 77000675--77000853 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
77000665 TATTTTATTG
* *
77000675 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACGTGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
77000740 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
77000760 CCCATGCTCTTTATTTTATTAATCCTTACATAATGTACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
77000825 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
77000845 CCCATGCTC
1 CCCATGCTC
77000854 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:77001853 original size:46 final size:45
Alignment explanation
Indices: 77001801--77002012 Score: 143
Period size: 46 Copynumber: 4.6 Consensus size: 45
77001791 GTCAATGCCG
* * *
77001801 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCAT-GCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CATAGCCGACGCA
*
77001847 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCATAGCCGACGCA
* * * * * *
77001891 TGTCCCAGACATGTCTTACACTG-TCTC-TCATAATGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-TCA--TAGCCGACGCA
* * * *
77001937 TGTCCCAGACATGTCTTACA-TTAGCCTTCGTCTCA-ATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGAG-C-ACATCTCATA-GCCGACG-CA
77001984 TGTCCCAGACATGGTCTTACACTG-GCACA
1 TGTCCCAGACAT-GTCTTACACTGAGCACA
77002013 CAAATCTCAT
Statistics
Matches: 133, Mismatches: 19, Indels: 28
0.74 0.11 0.16
Matches are distributed among these distances:
43 4 0.03
44 33 0.25
45 2 0.02
46 62 0.47
47 16 0.12
48 13 0.10
49 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCATAGCCGACGCA
Found at i:77001901 original size:44 final size:45
Alignment explanation
Indices: 77001838--77002012 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
77001828 ATGTAACCAT
77001838 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCATCGTA
* * * *
77001882 GCCGACGCATGTCCCAGACATGTCTTACACT-GTCTC-TCATAATGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG-CACATCAT--CGTA
* * * *
77001928 GCTGATGCATGTCCCAGACATGTCTTACATTAGC-CTTCGTC-TCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCATCGT--A
*
77001973 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACA
77002013 CAAATCTCAT
Statistics
Matches: 105, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
43 4 0.04
44 33 0.31
45 1 0.01
46 40 0.38
47 15 0.14
48 11 0.10
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCATCGTA
Found at i:77001907 original size:90 final size:93
Alignment explanation
Indices: 77001801--77002012 Score: 231
Period size: 90 Copynumber: 2.3 Consensus size: 93
77001791 GTCAATGCCG
* *
77001801 TGTCCCAGACAGGTCTTACACTGACACAT-GTAACCAT-GCCGATGCATGTCCCAGACATGTCTT
1 TGTCCCAGACATGTCTTACACTGACACATCATAA-CATGGCCGATGCATGTCCCAGACATGTCTT
77001864 ACACTAGCACATC-TCGT-A-GCCGACG-CA
65 ACACTAGC-CATCGTC-TAATGCCGACGCCA
* * ** *
77001891 TGTCCCAGACATGTCTTACACTGTCTC-TCATAATGTGGCTGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACATGTCTTACACTGACACATCATAACATGGCCGATGCATGTCCCAGACATGTCTTA
* * *
77001955 CATTAGCCTTCGTCTCAATGCCGATGCCA
66 CACTAGCCATCGTCT-AATGCCGACGCCA
*
77001984 TGTCCCAGACATGGTCTTACACTGGCACA
1 TGTCCCAGACAT-GTCTTACACTGACACA
77002013 CAAATCTCAT
Statistics
Matches: 101, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
89 6 0.06
90 61 0.60
91 1 0.01
92 6 0.06
93 14 0.14
94 13 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (93 bp):
TGTCCCAGACATGTCTTACACTGACACATCATAACATGGCCGATGCATGTCCCAGACATGTCTTA
CACTAGCCATCGTCTAATGCCGACGCCA
Found at i:77009904 original size:10 final size:10
Alignment explanation
Indices: 77009891--77009948 Score: 73
Period size: 10 Copynumber: 5.8 Consensus size: 10
77009881 AATTTAGGAT
* *
77009891 TTATTTTTAT
1 TTATCTTTAA
77009901 TTATCTTTAA
1 TTATCTTTAA
77009911 TTATCTTTAA
1 TTATCTTTAA
77009921 TTATCTTTAA
1 TTATCTTTAA
*
77009931 TTAT-TTGTAT
1 TTATCTT-TAA
77009941 TTATCTTT
1 TTATCTTT
77009949 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:77009919 original size:20 final size:19
Alignment explanation
Indices: 77009895--77009948 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
77009885 TAGGATTTAT
77009895 TTTTATTTATCTTTAATTA
1 TTTTATTTATCTTTAATTA
*
77009914 TCTTTAATTATCTTTAATTA
1 T-TTTATTTATCTTTAATTA
77009934 TTTGTATTTATCTTT
1 TTT-TATTTATCTTT
77009949 TAGAATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 3 0.10
20 28 0.90
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTATTTATCTTTAATTA
Found at i:77011281 original size:49 final size:48
Alignment explanation
Indices: 77011218--77011435 Score: 191
Period size: 49 Copynumber: 4.6 Consensus size: 48
77011208 ATCAAAGTTT
*
77011218 ATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATC-AGGCTG
* * *
77011267 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTG-TCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAG-GCT-G
* * * *
77011316 ATGCCATGTCCCAGAAAGGTCTTACACTGA----CATACAACAAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGGCTG
* * * * *
77011360 ACGCCATGTACCAGACAGGTCTTACACT-AGCTTGT-ACATCTCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATC-AGGCTG
* *
77011409 ATG-CATGTCCAAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
77011436 AGCTCTCATT
Statistics
Matches: 136, Mismatches: 23, Indels: 21
0.76 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 27 0.20
45 7 0.05
48 27 0.20
49 74 0.54
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGGCTG
Found at i:77011411 original size:93 final size:94
Alignment explanation
Indices: 77011218--77011435 Score: 230
Period size: 93 Copynumber: 2.3 Consensus size: 94
77011208 ATCAAAGTTT
* * * * * *
77011218 ATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATATCGAGGCTGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGA---TCATACAACGAAGCTGACGCCATGTACCAGAC
* *
77011283 AGGTCTTACACTGGCTCTCATCTATCAGTGTCG
63 AGGTCTTACACTAGCTCTCATC-ATCAGTGCCG
*
77011316 ATGCCATGTCCCAGAAAGGTCTTACACTGA-CATACAAC-AAGCTGACGCCATGTACCAGACAGG
1 ATGCCATGTCCCAGACAGGTCTTACACTGATCATACAACGAAGCTGACGCCATGTACCAGACAGG
*
77011379 TCTTACACTAGCTTGTACATC-TCGAG-GCCG
66 TCTTACACTAGC-TCT-CATCATC-AGTGCCG
* *
77011409 ATG-CATGTCCAAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
77011436 AGCTCTCATT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
92 21 0.20
93 41 0.39
94 10 0.10
95 4 0.04
98 28 0.27
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (94 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGATCATACAACGAAGCTGACGCCATGTACCAGACAGG
TCTTACACTAGCTCTCATCATCAGTGCCG
Found at i:77012871 original size:49 final size:49
Alignment explanation
Indices: 77012783--77012897 Score: 128
Period size: 49 Copynumber: 2.3 Consensus size: 49
77012773 TGTTGTGTGT
* * * *
77012783 CAGTGTAAGACTTGTCTGGGACCTGGCATTGACACCGATAGT-TGAAAGC
1 CAGTGTAAGACCTGTCTGGAACATGGCATAGACACCGATA-TATGAAAGC
*
77012832 CAGTGTAAGACCTGTCTGGAACATGGCATCAG-C-CTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGAACATGGCAT-AGACAC-CGATATATGAAAGC
*
77012881 CAATGTAAGACCTGTCT
1 CAGTGTAAGACCTGTCT
77012898 AAGACACGAC
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
48 2 0.04
49 54 0.95
50 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGAACATGGCATAGACACCGATATATGAAAGC
Found at i:77014497 original size:46 final size:47
Alignment explanation
Indices: 77014381--77014501 Score: 142
Period size: 48 Copynumber: 2.6 Consensus size: 47
77014371 TCGTCTCAAT
77014381 GTCGATGCATG-CCTCAGACATGTCTTACATTGGCTTGTATATCTCGA
1 GTCGATGCATGTCC-CAGACATGTCTTACATTGGCTTGTATATCTCGA
* * * *
77014428 GGCTGATGCTTGTCCCAAACATGTCTTACATTGGCTCTAGTA-ATGT-G-
1 GTC-GATGCATGTCCCAGACATGTCTTACATTGGCT-T-GTATATCTCGA
77014475 GTCGATGCATGTCCCAGACATGTCTTA
1 GTCGATGCATGTCCCAGACATGTCTTA
77014502 TACTAGCACA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
46 22 0.35
47 4 0.06
48 28 0.44
49 6 0.10
50 3 0.05
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (47 bp):
GTCGATGCATGTCCCAGACATGTCTTACATTGGCTTGTATATCTCGA
Found at i:77017703 original size:26 final size:26
Alignment explanation
Indices: 77017673--77017722 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
77017663 CTATTGGAGG
*
77017673 GCTTAGAATCCTTTTTATTTCTGCTC
1 GCTTAGAATCCCTTTTATTTCTGCTC
77017699 GCTTAGAATCCCTTTTATTTCTGC
1 GCTTAGAATCCCTTTTATTTCTGC
77017723 CCCTTTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.24, G:0.12, T:0.48
Consensus pattern (26 bp):
GCTTAGAATCCCTTTTATTTCTGCTC
Found at i:77025902 original size:27 final size:27
Alignment explanation
Indices: 77025872--77025950 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
77025862 GTCTCGGTGA
* *
77025872 ACTATCTCTTGTTTAACGTCCCATTAG
1 ACTATCCCGTGTTTAACGTCCCATTAG
* **
77025899 ACTATCCCGTGTTTAGCGTCCCACCAG
1 ACTATCCCGTGTTTAACGTCCCATTAG
* *
77025926 ACTATCCCGTGTTTAATGTCTCATT
1 ACTATCCCGTGTTTAACGTCCCATT
77025951 GAACTTTCTA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.20, C:0.29, G:0.14, T:0.37
Consensus pattern (27 bp):
ACTATCCCGTGTTTAACGTCCCATTAG
Found at i:77026185 original size:45 final size:44
Alignment explanation
Indices: 77026027--77026189 Score: 156
Period size: 45 Copynumber: 3.7 Consensus size: 44
77026017 CAAAGTATAC
* * * * *
77026027 CATAGCCTTTTTCAGCTATGGTCTTAGC-CTTGTTTA-CTATGACG
1 CATAGCATCTTTCAGCTATGGTCTTA-CTCATGTATATC-ATGATG
** *
77026071 CCATAGCATCTTTCAGCCGTGGTCTTACTCATTTATATCATGATG
1 -CATAGCATCTTTCAGCTATGGTCTTACTCATGTATATCATGATG
* *
77026116 C-GA-CGTCTTTCAGCTATGGTCTTACTCATCGT-TATCATGATG
1 CATAGCATCTTTCAGCTATGGTCTTACTCAT-GTATATCATGATG
77026158 TCATAGCATCTTTCAGCTATGGTCTTACTCAT
1 -CATAGCATCTTTCAGCTATGGTCTTACTCAT
77026190 TTTAGGTGTA
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 33 0.34
43 3 0.03
44 3 0.03
45 57 0.59
46 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (44 bp):
CATAGCATCTTTCAGCTATGGTCTTACTCATGTATATCATGATG
Found at i:77030987 original size:22 final size:22
Alignment explanation
Indices: 77030950--77030994 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
77030940 TTGATGTTCT
77030950 AGTTGGAATCGTAATGTGTCTAA
1 AGTTGGAATCGTAATGTGT-TAA
*
77030973 AGTTGGTAT-GTAATGTGTTAA
1 AGTTGGAATCGTAATGTGTTAA
77030994 A
1 A
77030995 CTTAATTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 9 0.43
23 8 0.38
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (22 bp):
AGTTGGAATCGTAATGTGTTAA
Found at i:77041659 original size:49 final size:49
Alignment explanation
Indices: 77041589--77042121 Score: 1039
Period size: 49 Copynumber: 10.9 Consensus size: 49
77041579 NNNNNNNNNN
*
77041589 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
77041638 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77041687 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77041736 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77041785 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77041834 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77041883 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77041932 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
77041981 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77042030 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
77042079 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
77042122 CTATCATTTC
Statistics
Matches: 479, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 479 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:77047108 original size:40 final size:39
Alignment explanation
Indices: 77047071--77047162 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
77047061 GCTACTCGTT
*
77047071 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* * *
77047111 CAAATTCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
77047150 CAAATGCCTTCGG
1 CAAATGCCTTCGG
77047163 ATCTTAGTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 32 0.70
40 14 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:77047142 original size:39 final size:40
Alignment explanation
Indices: 77047052--77047212 Score: 143
Period size: 40 Copynumber: 4.0 Consensus size: 40
77047042 CGGAATTTAA
**
77047052 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGC
* * *
77047092 CCGGTTATAGTAACTCGCACAAATTCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
* * *
77047131 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAGC
* * * *
77047171 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAGC
77047211 CC
1 CC
77047213 AGACATCATT
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.31
40 54 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:77049715 original size:48 final size:47
Alignment explanation
Indices: 77049658--77049751 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 47
77049648 TAGTTACGAC
77049658 AATGGGGAAAAGAAAGATGAACATACCTTGTTTCTATCACTCATTTCT
1 AATGGGGAAAAGAAAGATGAACATACCTTGTTTCTATCACTC-TTTCT
*
77049706 AATGGGGAAAAGAAAGATGAACATACCTTGTTTCTATCCCTCTTTC
1 AATGGGGAAAAGAAAGATGAACATACCTTGTTTCTATCACTCTTTC
77049752 CTTCTTTTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 4 0.09
48 41 0.91
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (47 bp):
AATGGGGAAAAGAAAGATGAACATACCTTGTTTCTATCACTCTTTCT
Found at i:77057276 original size:28 final size:28
Alignment explanation
Indices: 77057240--77057346 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
77057230 GCAATCAAAT
* * *
77057240 ATGGTACTTAATGTACGAAATATTTAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
77057268 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
77057296 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
77057324 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
77057347 CGAATGATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:77059352 original size:28 final size:28
Alignment explanation
Indices: 77059321--77059475 Score: 121
Period size: 28 Copynumber: 5.5 Consensus size: 28
77059311 GTAAACATAG
*
77059321 GCACTGTGTGTGTGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
77059349 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* *
77059378 GCACTGTATGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
77059406 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
*
77059435 GCACTGTGTGTGTGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
*
77059463 GCACCGTGTGTGC
1 GCACTGTGTGTGC
77059476 AAGATCGGTT
Statistics
Matches: 89, Mismatches: 36, Indels: 4
0.69 0.28 0.03
Matches are distributed among these distances:
28 50 0.56
29 39 0.44
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:77059389 original size:29 final size:29
Alignment explanation
Indices: 77059349--77059446 Score: 126
Period size: 29 Copynumber: 3.4 Consensus size: 29
77059339 CCGTAACCAA
77059349 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * ****
77059378 GCACTGTATGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
77059406 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
77059435 GCACTGTGTGTG
1 GCACTGTGTGTG
77059447 TGAGTTCCGT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 21 0.39
29 33 0.61
ACGTcount: A:0.15, C:0.17, G:0.38, T:0.30
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:77059395 original size:57 final size:57
Alignment explanation
Indices: 77059319--77059506 Score: 304
Period size: 57 Copynumber: 3.3 Consensus size: 57
77059309 AAGTAAACAT
77059319 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
77059376 AGGCACTGTATGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
77059433 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACCGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* **
77059490 GGGCACTAAGTGTGTGA
1 AGGCACTGTGTGTGTGA
77059507 AATGAGATCA
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 120 1.00
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:77063859 original size:28 final size:28
Alignment explanation
Indices: 77063828--77063929 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
77063818 CAAATATGGT
* *
77063828 ACTTAATGTACGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
77063856 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
77063884 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
77063912 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
77063930 CGAATGATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:77065928 original size:28 final size:28
Alignment explanation
Indices: 77065897--77066051 Score: 112
Period size: 28 Copynumber: 5.5 Consensus size: 28
77065887 GTGAACATAG
*
77065897 GCACTGTGTGTGTGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * * **** *
77065925 GCACTGTGTGTGAGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* * *
77065954 GCACTGTATGTGCGAGTTACGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
77065982 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
77066011 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
*
77066039 GCACCGTGTGTGC
1 GCACTGTGTGTGC
77066052 AAGATCGGTT
Statistics
Matches: 88, Mismatches: 37, Indels: 4
0.68 0.29 0.03
Matches are distributed among these distances:
28 50 0.57
29 38 0.43
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:77065965 original size:29 final size:29
Alignment explanation
Indices: 77065925--77066026 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
77065915 CCGTAACCAA
*
77065925 GCACTGTGTGTGAGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
77065954 GCACTGTATGTGCGAGTTAC-GTAACCGA-
1 GCACTGTGTGTGCGAGAT-CGGTTGTTGAG
77065982 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
77066011 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
77066027 TTCCGTAACC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 1 0.02
28 20 0.35
29 35 0.61
30 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.28
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:77065985 original size:57 final size:57
Alignment explanation
Indices: 77065895--77066081 Score: 277
Period size: 57 Copynumber: 3.2 Consensus size: 57
77065885 AAGTGAACAT
*
77065895 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
* * * *
77065952 AGGCACTGTATGTGCGAGTTACGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
*
77066009 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACCGTGTGTGCA-AGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTG-AGAGATCGGTTGTTG
*
77066066 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
77066082 AAATGAGATC
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
Found at i:77066308 original size:46 final size:46
Alignment explanation
Indices: 77066255--77066391 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
77066245 TATATATACA
* * * *
77066255 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
77066301 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
77066347 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACTACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
77066392 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:77066425 original size:47 final size:47
Alignment explanation
Indices: 77066365--77066649 Score: 383
Period size: 47 Copynumber: 6.0 Consensus size: 47
77066355 ACACATTTCG
*
77066365 CATTAGCCATTCGGCCTTA-CTACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATC-ACATATATACATGTTCACATTCATCA
* *
77066412 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
77066459 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * ** *
77066506 CATTGGCCATTTGGCCTTATCACACATACGCATGTTAACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
77066553 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
77066604 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATC
77066650 CCATAAAATC
Statistics
Matches: 215, Mismatches: 18, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
47 173 0.80
48 1 0.00
49 2 0.01
51 39 0.18
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:77073307 original size:27 final size:28
Alignment explanation
Indices: 77073276--77073328 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
77073266 AGCACAATTT
77073276 GGGCCTAAGCCC-TTTCAGTAACAGTTA
1 GGGCCTAAGCCCATTTCAGTAACAGTTA
* *
77073303 GGGCCTTAGCCCATTTTAGTAACAGT
1 GGGCCTAAGCCCATTTCAGTAACAGT
77073329 AGCAATCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (28 bp):
GGGCCTAAGCCCATTTCAGTAACAGTTA
Found at i:77073341 original size:34 final size:34
Alignment explanation
Indices: 77073303--77073382 Score: 133
Period size: 34 Copynumber: 2.4 Consensus size: 34
77073293 GTAACAGTTA
*
77073303 GGGCCTTAGCCCATTTTAGTAACAGTAGCAATCT
1 GGGCCTGAGCCCATTTTAGTAACAGTAGCAATCT
* *
77073337 GGGCCTGAGCCCATTTTAGTAACAGTAGCAGTTT
1 GGGCCTGAGCCCATTTTAGTAACAGTAGCAATCT
77073371 GGGCCTGAGCCC
1 GGGCCTGAGCCC
77073383 GTTAACATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (34 bp):
GGGCCTGAGCCCATTTTAGTAACAGTAGCAATCT
Found at i:77085570 original size:18 final size:18
Alignment explanation
Indices: 77085547--77085582 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
77085537 TTTCCTAAGT
*
77085547 ATAAAACAATAAATTAAA
1 ATAAAACAAGAAATTAAA
*
77085565 ATAAAACAGGAAATTAAA
1 ATAAAACAAGAAATTAAA
77085583 GGATTAGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (18 bp):
ATAAAACAAGAAATTAAA
Found at i:77090630 original size:32 final size:32
Alignment explanation
Indices: 77090594--77090657 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
77090584 TTAAGTGTTA
77090594 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
1 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
77090626 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
1 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
77090658 CCTTCTTTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (32 bp):
GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
Found at i:77093883 original size:13 final size:13
Alignment explanation
Indices: 77093865--77093889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77093855 GGCACACGCT
77093865 CGTGTCCATGACC
1 CGTGTCCATGACC
77093878 CGTGTCCATGAC
1 CGTGTCCATGAC
77093890 ATGGCCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (13 bp):
CGTGTCCATGACC
Found at i:77095011 original size:48 final size:48
Alignment explanation
Indices: 77094935--77095160 Score: 224
Period size: 48 Copynumber: 4.7 Consensus size: 48
77094925 GGTAAATTGG
* * * * * * *
77094935 CGATGCCATGTCTCAGACATGGTATTACGCTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAGGC
* * *
77094983 CGATGCCATGTCCCAGACATTGTCTTACGCTAGCTCTTATCTCAATGG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA-GGC
* **
77095031 CGATGCCATGT-CCAGTACATGGTCTTACACTAGCTTTCATCTCAATAC
1 CGATGCCATGTCCCAG-ACATGGTCTTACACTAGCTCTCATCTCAAGGC
* * * *
77095079 CGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTCAAGGC
* * *
77095127 TGATGTCATGTCCCAAACATGGTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC
77095161 ACACATATCA
Statistics
Matches: 147, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
47 4 0.03
48 136 0.93
49 7 0.05
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAGGC
Found at i:77095096 original size:96 final size:94
Alignment explanation
Indices: 77094932--77095166 Score: 247
Period size: 96 Copynumber: 2.4 Consensus size: 94
77094922 GAGGGTAAAT
* * * * * *
77094932 TGGCGATGCCATGTCTCAGACATGGTATTACGCTGGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGGCGATGCCATGTC-CAGACATGGTCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCC
* * * *
77094997 AGACATTGTCTTACGCTAGCTCTTAT-CTCAA
65 AGACATGGTCTTACACTAGCTCTCATAAT--A
** * *
77095028 TGGCGATGCCATGTCCAGTACATGGTCTTACACTAGCTTTCATCTCAATACCGATTCCATGTCCC
1 TGGCGATGCCATGTCCAG-ACATGGTCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCC
*
77095093 AGACATGGTCTTACACTGGCTCTCATAATA
65 AGACATGGTCTTACACTAGCTCTCATAATA
* * *
77095123 TGGCTGATGTCATGTCCCAAACATGGTCTTACACTAGCACACAT
1 TGGC-GATGCCATGT-CCAGACATGGTCTTACACTAGCTCACAT
77095167 ATCACCCAAA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
95 8 0.07
96 103 0.90
97 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (94 bp):
TGGCGATGCCATGTCCAGACATGGTCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATAATA
Found at i:77098915 original size:45 final size:44
Alignment explanation
Indices: 77098836--77098998 Score: 146
Period size: 45 Copynumber: 3.6 Consensus size: 44
77098826 TGCCATAGTG
* * * * *
77098836 TCTTTCAGCTATGGTTTTATTCCTATTTACCATGATGCCATAACG
1 TCTTTCAGCTATGGTCTTACTCAT-TTTATCATGATGCCATAACA
* * * * *
77098881 TCTTTCAGCCATGGTTTTACTCATTTATATCATGACGTCACAACA
1 TCTTTCAGCTATGGTCTTACTCATTT-TATCATGATGCCATAACA
* * * * *
77098926 TGTTTTAGCTATGGTCTTACTTACTTTTATCATGATGTCATAGCA
1 TCTTTCAGCTATGGTCTTACTCA-TTTTATCATGATGCCATAACA
* *
77098971 TCTTTCAGTTATGGTCTTACTGATTTTA
1 TCTTTCAGCTATGGTCTTACTCATTTTA
77098999 AGCGTATAGC
Statistics
Matches: 96, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
44 7 0.07
45 86 0.90
46 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (44 bp):
TCTTTCAGCTATGGTCTTACTCATTTTATCATGATGCCATAACA
Found at i:77102310 original size:47 final size:47
Alignment explanation
Indices: 77102243--77102727 Score: 808
Period size: 47 Copynumber: 10.3 Consensus size: 47
77102233 TTATCATATT
* * ** * * **
77102243 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102290 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
* * **
77102337 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102384 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102431 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102478 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102525 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102572 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
77102619 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
** **
77102666 TATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
* *
77102713 TATATACATTCACAT
1 TATACACTTTCACAT
77102728 CACAATTATC
Statistics
Matches: 416, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 416 1.00
ACGTcount: A:0.31, C:0.33, G:0.07, T:0.29
Consensus pattern (47 bp):
TATACACTTTCACATTCATCACATCAGCCATTAGGCCCCATCACATA
Found at i:77107752 original size:40 final size:39
Alignment explanation
Indices: 77107708--77107932 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 39
77107698 TACTTGCTCG
* * *
77107708 AATGCCTTCGGGGCATAGCCCGGTTATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACA
*
77107748 AATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACA
* * *
77107788 AATGCCTTCGGGACTTAGCCCGAATTTGGTAACTCGGACA
1 AATGCCTTCGGGACTTAGCCCG-GTTTAGTAACTCGCACA
77107828 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACA
* *
77107868 AATGCCTTCGGGACTTAGCCCAGATTTAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCC-GGTTTAGTAACTCGCACA
* *
77107908 AATACCTTTGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACTTAGCCCGGTT
77107933 ATCATCCGAA
Statistics
Matches: 167, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 161 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACA
Found at i:77107921 original size:120 final size:120
Alignment explanation
Indices: 77107708--77107929 Score: 356
Period size: 120 Copynumber: 1.9 Consensus size: 120
77107698 TACTTGCTCG
* * *
77107708 AATGCCTTCGGGGCATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAT
* *
77107773 TTGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTGGTAACTCGGACA
66 TTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGAATTTGGTAACTCGGACA
*
77107828 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
1 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
* *
77107892 TTTAGTAGCTCGCACAAATACCTTTGGGACTTAGCCCG
65 TTTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCG
77107930 GTTATCATCC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
120 91 0.98
121 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAT
TTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGAATTTGGTAACTCGGACA
Found at i:77115918 original size:40 final size:40
Alignment explanation
Indices: 77115860--77116056 Score: 340
Period size: 40 Copynumber: 4.9 Consensus size: 40
77115850 AGCTCGGTTA
*
77115860 TAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
* *
77115900 TGGTAACTCGCACAAATGCCTTCGGAACTTAGCCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
*
77115940 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
*
77115980 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
*
77116020 TAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
77116057 TTATCATCCG
Statistics
Matches: 149, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
Found at i:77117355 original size:45 final size:45
Alignment explanation
Indices: 77117272--77117363 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 45
77117262 ATGGTAGAAT
* *
77117272 ATGAAGGCTGAAATTATGTTAAACAACTTTTACAAAGCGGTTTTA
1 ATGAAGGCTGAAATTATGTTAAACAACTTTGACAAAGCGATTTTA
* *
77117317 ATGAA-GCTTGAAATTATGTTAAACGAC-TTGAGCTAAGCGATTTTA
1 ATGAAGGC-TGAAATTATGTTAAACAACTTTGA-CAAAGCGATTTTA
77117362 AT
1 AT
77117364 CGAAAACGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 5 0.12
45 36 0.88
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (45 bp):
ATGAAGGCTGAAATTATGTTAAACAACTTTGACAAAGCGATTTTA
Found at i:77122368 original size:38 final size:38
Alignment explanation
Indices: 77122312--77122386 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
77122302 GATGTGTATT
* * *
77122312 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
77122350 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
77122387 TCGAGCCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:77122638 original size:43 final size:43
Alignment explanation
Indices: 77122384--77122625 Score: 394
Period size: 43 Copynumber: 5.6 Consensus size: 43
77122374 GCTGGTATTA
* *
77122384 TATTCGAGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
77122427 TATTCGGGCCTTCGTGTCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
77122470 TATTCGAGCCTTCGTGTCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
77122513 TATTCAGGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
77122556 TATTTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
1 TA-TTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
77122600 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
77122626 GTAATTTCGG
Statistics
Matches: 186, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 144 0.77
44 42 0.23
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:77129954 original size:37 final size:37
Alignment explanation
Indices: 77129895--77129966 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
77129885 AGCTCAGAAG
*
77129895 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
77129932 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
77129967 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Done.