Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 234 of 310
Found at i:77130255 original size:48 final size:48
Alignment explanation
Indices: 77130112--77130298 Score: 250
Period size: 48 Copynumber: 3.8 Consensus size: 48
77130102 GCACATCGCC
*
77130112 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
77130164 TATATATTTCACATT-GACCATTCGGCTTTACCACATTTGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
77130212 TACATGTTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
**
77130260 TACATATTTCACATTAGCCATTCGATTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
77130299 TGCATGTTCA
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
48 77 0.64
49 1 0.01
51 1 0.01
52 41 0.34
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:77130347 original size:47 final size:47
Alignment explanation
Indices: 77130291--77130385 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
77130281 TCGATTTTAC
* * *
77130291 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTAT
1 CACACATATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTAT
*
77130338 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACACATATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTAT
77130385 C
1 C
77130386 TCATATATAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.32
Consensus pattern (47 bp):
CACACATATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTAT
Found at i:77130404 original size:47 final size:47
Alignment explanation
Indices: 77130305--77130414 Score: 148
Period size: 47 Copynumber: 2.3 Consensus size: 47
77130295 TATATGCATG
* * * **
77130305 TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATG
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACA
* * *
77130352 CTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACACA
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACA
77130399 TTCACATTCATCACAT
1 TTCACATTCATCACAT
77130415 AAAATCCTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACA
Found at i:77139784 original size:40 final size:40
Alignment explanation
Indices: 77139736--77140621 Score: 1720
Period size: 40 Copynumber: 22.2 Consensus size: 40
77139726 GGACTAAGAT
* *
77139736 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77139776 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77139816 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77139856 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77139896 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77139936 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77139976 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140016 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140056 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140096 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140136 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140176 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140216 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140256 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140296 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140336 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140376 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140416 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140456 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140496 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140536 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
77140576 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77140615 CCGAAGG
1 CCGAAGG
77140622 TACTTGGGTT
Statistics
Matches: 841, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
39 15 0.02
40 826 0.98
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:77148495 original size:39 final size:40
Alignment explanation
Indices: 77148410--77148495 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
77148400 GGACTAAGAT
* *
77148410 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
*
77148450 CCGAAGGCATTTGTGCGAGTTG-TTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAATC
77148489 CCGAAGG
1 CCGAAGG
77148496 TACTTGGGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 15 0.36
40 25 0.60
41 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
Found at i:77170578 original size:42 final size:44
Alignment explanation
Indices: 77170515--77170598 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 44
77170505 CATATAATTC
**
77170515 AATATCGATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATAA
1 AATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAATAA
* *
77170558 AATAT-GATGCCAATGTCCCAGACATGGTCTTATACGTAAAT
1 AATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAAT
77170599 CTCAATCGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 27 0.75
43 9 0.25
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (44 bp):
AATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAATAA
Found at i:77172996 original size:12 final size:12
Alignment explanation
Indices: 77172979--77173007 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
77172969 TCATGTCCCA
77172979 GACACGGGCAAT
1 GACACGGGCAAT
77172991 GACACGGGCAAT
1 GACACGGGCAAT
77173003 GACAC
1 GACAC
77173008 AACCATAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.07
Consensus pattern (12 bp):
GACACGGGCAAT
Found at i:77187200 original size:27 final size:27
Alignment explanation
Indices: 77187170--77187261 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
77187160 ATTACCAAAG
*
77187170 TACCCTCGATATA-AAGAATTATCGTTT
1 TACCCTCGATTTACAA-AATTATCGTTT
* *
77187197 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCGTTT
*
77187224 TACCCT-TAGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTACAAAATTATCGTTT
*
77187251 TGCCCTCGATT
1 TACCCTCGATT
77187262 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 50 0.93
28 3 0.06
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCGTTT
Found at i:77187323 original size:27 final size:26
Alignment explanation
Indices: 77187293--77187388 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 26
77187283 TGTAGGATAG
*
77187293 AATTACCAAAATACCACTGGTTTGAGA
1 AATTACCAAAATACCACTGATTTGA-A
* *
77187320 AATTACCGAAATA-CACTCAATTTGTAA
1 AATTACCAAAATACCACT-GATTTG-AA
* *
77187347 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCACTGATTT-GAA
*
77187374 AATTACAAAAATACC
1 AATTACCAAAATACC
77187389 CTTGACTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.07
27 49 0.86
28 4 0.07
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.26
Consensus pattern (26 bp):
AATTACCAAAATACCACTGATTTGAA
Found at i:77187428 original size:27 final size:27
Alignment explanation
Indices: 77187398--77187454 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
77187388 CCTTGACTTT
*
77187398 TTTAAAAAATTA-TAGGAATACCATTGG
1 TTTAAAAAATTACT-GAAATACCATTGG
* *
77187425 TTTACAAAATTACTGAAATACCCTTGG
1 TTTAAAAAATTACTGAAATACCATTGG
77187452 TTT
1 TTT
77187455 GTAGATTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
TTTAAAAAATTACTGAAATACCATTGG
Found at i:77187531 original size:27 final size:27
Alignment explanation
Indices: 77187499--77187550 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
77187489 GACTAAAATA
77187499 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
77187526 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
77187551 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:77188428 original size:25 final size:25
Alignment explanation
Indices: 77188364--77188432 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
77188354 GGAAGTGCTA
* *
77188364 AAAGGGCGCTGCCCCAGTTTACCGG
1 AAAGGGCTCTGCCCCAGTTTACCAG
* *
77188389 AAAGGGCTCTACCCCAGTTTATCAG
1 AAAGGGCTCTGCCCCAGTTTACCAG
* *
77188414 AAAGGGTTTTGCCCCAGTT
1 AAAGGGCTCTGCCCCAGTT
77188433 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (25 bp):
AAAGGGCTCTGCCCCAGTTTACCAG
Found at i:77188639 original size:42 final size:42
Alignment explanation
Indices: 77188580--77188671 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
77188570 TAGTCTCCCC
* ** *
77188580 AAATGGGCTTGCATACATTCATTGGTATTTCATGTCATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
*
77188622 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
77188664 AAATGGGC
1 AAATGGGC
77188672 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
Found at i:77191034 original size:27 final size:27
Alignment explanation
Indices: 77191001--77191106 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
77190991 CCTTGACTTG
***
77191001 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
77191028 TAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
77191055 CAAAATTACCATTTTACCCTCAATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
**
77191082 TAAAATTACTGTTTTACCCTCGATT
1 TAAAATTACCATTTTACCCTCGATT
77191107 GTGAAATTAT
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
TAAAATTACCATTTTACCCTCGATTTA
Found at i:77191060 original size:54 final size:54
Alignment explanation
Indices: 77191002--77191106 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 54
77190992 CTTGACTTGT
* *
77191002 AAAATTACCAAAGTACCCTCGATTTATAGAATTA-TCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAATTTATAAAATTACT-GTTTTACCCTCGATTTAC
***
77191056 AAAATTACCATTTTACCCTCAATTTATAAAATTACTGTTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCAATTTATAAAATTACTGTTTTACCCTCGATT
77191107 GTGAAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
54 44 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAATTTATAAAATTACTGTTTTACCCTCGATTTAC
Found at i:77191168 original size:27 final size:27
Alignment explanation
Indices: 77191138--77191233 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
77191128 TATAGGATAG
**
77191138 AATTACCAAAATACCACT-GGTTTG-AGA
1 AATTACCAAAATACC-CTCAATTTGTA-A
*
77191165 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTCAATTTGTAA
**
77191192 AATTACCAAAATACCC-CTAATTTACAA
1 AATTACCAAAATACCCTC-AATTTGTAA
*
77191219 AATTACAAAAATACC
1 AATTACCAAAATACC
77191234 ATTGACTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.05
27 55 0.93
28 1 0.02
ACGTcount: A:0.46, C:0.22, G:0.06, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTGTAA
Found at i:77191282 original size:27 final size:27
Alignment explanation
Indices: 77191212--77191299 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
77191202 ATACCCCTAA
* * *
77191212 TTTACAAAATTACAAAAATACCATTGACTT
1 TTTACAAAATTATAGAAATACCATTG---G
* *
77191242 TTTAAAAAAATTATAGGAATACCATTGG
1 TTT-ACAAAATTATAGAAATACCATTGG
* *
77191270 TTTACAAAATTATTGAAATACCCTTGG
1 TTTACAAAATTATAGAAATACCATTGG
77191297 TTT
1 TTT
77191300 GTAGATTTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 23 0.48
28 3 0.06
30 3 0.06
31 19 0.40
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:77192249 original size:25 final size:24
Alignment explanation
Indices: 77192215--77192284 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
77192205 AGGAAGTGCT
* *
77192215 AAAAAGGCTCTGCCCCAGTTTACTG
1 AAAAGGGCTCTGCCCCAGTTTA-TC
77192240 AAAAGGGCTCTGCCCCAGTTTATC
1 AAAAGGGCTCTGCCCCAGTTTATC
* *
77192264 AGAAAGGGTTTTGCCCCAGTT
1 A-AAAGGGCTCTGCCCCAGTT
77192285 GTTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 2 0.05
25 38 0.95
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTATC
Found at i:77192491 original size:42 final size:42
Alignment explanation
Indices: 77192432--77192523 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
77192422 TAGTCTCCCC
* ** *
77192432 AAATGGGCTTGCATACATTCATTGGTATTTCATGTCATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
*
77192474 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
77192516 AAATGGGC
1 AAATGGGC
77192524 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
Found at i:77196448 original size:35 final size:35
Alignment explanation
Indices: 77196408--77196566 Score: 165
Period size: 35 Copynumber: 4.5 Consensus size: 35
77196398 GTATGTACAT
77196408 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * * *
77196443 ATGTGATGTTATATTAAACTTGAATATCTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
77196478 ATGTGATGTTTTATTGAGCTTGTATATTTGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
77196513 ATATGATGATATATTGTACTTGTATGTTTGGCGAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
77196548 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
77196567 CTTGAGTATT
Statistics
Matches: 98, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 98 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:77196875 original size:59 final size:59
Alignment explanation
Indices: 77196783--77196902 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
77196773 TGAAAAGTTG
*
77196783 AATAATATTATGCTAAATGAGAAATATTAGTATTCGGCCAAGGTAAATTATTTGTGTTA
1 AATAATATTATGCTAAATGAGAAATATTAGTATTCGGCCAAGGTAAATTATTTATGTTA
* * *
77196842 AATAATATTATGCTGAATGAGAAATATTAGTATTCGGCTAAGGTAACTTATTTATGTTA
1 AATAATATTATGCTAAATGAGAAATATTAGTATTCGGCCAAGGTAAATTATTTATGTTA
77196901 AA
1 AA
77196903 GTATAACATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.38
Consensus pattern (59 bp):
AATAATATTATGCTAAATGAGAAATATTAGTATTCGGCCAAGGTAAATTATTTATGTTA
Found at i:77201832 original size:28 final size:28
Alignment explanation
Indices: 77201789--77201904 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
77201779 GGAGGAAGCG
77201789 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
77201817 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
77201845 TTCTGGTGGCCCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * * *
77201873 ATCTAGTGACTCTGTCAC-AATTTCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
77201899 TTCTGG
1 TTCTGG
77201905 CAGCCATACT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.05
27 7 0.09
28 66 0.86
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:77202496 original size:26 final size:26
Alignment explanation
Indices: 77202467--77202518 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
77202457 CGACAACAAA
77202467 GCAAAACTTCCGCAACGAAAACGTTT
1 GCAAAACTTCCGCAACGAAAACGTTT
77202493 GCAAAACTTCCGCAACGAAAACGTTT
1 GCAAAACTTCCGCAACGAAAACGTTT
77202519 TCCAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.19
Consensus pattern (26 bp):
GCAAAACTTCCGCAACGAAAACGTTT
Found at i:77208323 original size:27 final size:27
Alignment explanation
Indices: 77208293--77208470 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77208283 ATATTGAGTC
* * * *
77208293 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
77208320 CGCACATTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77208347 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** *
77208375 CGCACACTTAGTGCCGCATGGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77208402 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77208429 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77208456 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77208471 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77218687 original size:3 final size:3
Alignment explanation
Indices: 77218674--77218705 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
77218664 CTCTATGGGA
*
77218674 TCT TAT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
77218706 GGGATCCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:77224195 original size:27 final size:27
Alignment explanation
Indices: 77224152--77224568 Score: 505
Period size: 27 Copynumber: 15.4 Consensus size: 27
77224142 CTTGTGATTT
* *
77224152 AGGGGAAAATGATCGAAATACCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
* *
77224179 AGGGTAAACTGACCGAAATACCCTTGA
1 AGGGTAAAATGACCGAAATACCCTCGA
*
77224206 AGGGTAAAATGATCGAAATACCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
* **
77224233 AGGGTAAAATGATCGAAATACCCTTAA
1 AGGGTAAAATGACCGAAATACCCTCGA
* * * *
77224260 AGGGTAAATTAACTGAAATACCCTCAA
1 AGGGTAAAATGACCGAAATACCCTCGA
*
77224287 AGGGTAAAATGACTGAAATACCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
*
77224314 AGGGTAAAATGACCGAAATACCCTCAA
1 AGGGTAAAATGACCGAAATACCCTCGA
* *
77224341 AGGGTAGAATGACCAAAATACCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
77224368 AGGGTAAAATGACCGAAATACCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
* * *
77224395 AGGGTAGAATGATCGAAATATCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
* **
77224422 AGGGTAGAATGATAGAAATACCCTCGA
1 AGGGTAAAATGACCGAAATACCCTCGA
* * *
77224449 AGGGTAGAATGATCGAAATACCCTTGA
1 AGGGTAAAATGACCGAAATACCCTCGA
* ** **
77224476 AGGGTAGAATGATTGAAATACCCTTAA
1 AGGGTAAAATGACCGAAATACCCTCGA
* * *
77224503 AGGGTAAAATGACAGAAATACCCCCAA
1 AGGGTAAAATGACCGAAATACCCTCGA
77224530 AGGGTAAAATGACCGAAATACCCAT--A
1 AGGGTAAAATGACCGAAATACCC-TCGA
77224556 TAGGGTAAAATGA
1 -AGGGTAAAATGA
77224569 GTGTTATACC
Statistics
Matches: 348, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 347 1.00
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (27 bp):
AGGGTAAAATGACCGAAATACCCTCGA
Found at i:77243579 original size:15 final size:13
Alignment explanation
Indices: 77243551--77243575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77243541 AACAAGTAAT
77243551 AAAGTGACAATTA
1 AAAGTGACAATTA
77243564 AAAGTGACAATT
1 AAAGTGACAATT
77243576 TTAAACACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (13 bp):
AAAGTGACAATTA
Found at i:77243950 original size:57 final size:57
Alignment explanation
Indices: 77243862--77243976 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
77243852 GACTATATCT
77243862 CTATGTCAATTCAACCGATTAAACAAATTTTAATAAGCAAATGTGTTAATGCACATA
1 CTATGTCAATTCAACCGATTAAACAAATTTTAATAAGCAAATGTGTTAATGCACATA
77243919 CTATGTCAATTCAACCGATTAAACAAATTTTAATAAGCAAATGTGTTAATGCACATA
1 CTATGTCAATTCAACCGATTAAACAAATTTTAATAAGCAAATGTGTTAATGCACATA
77243976 C
1 C
77243977 ATACCTATGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (57 bp):
CTATGTCAATTCAACCGATTAAACAAATTTTAATAAGCAAATGTGTTAATGCACATA
Found at i:77245776 original size:18 final size:18
Alignment explanation
Indices: 77245753--77245787 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
77245743 ACAGTCATTT
77245753 TACCCTATGGGGGTATTC
1 TACCCTATGGGGGTATTC
77245771 TACCCTATGGGGGTATT
1 TACCCTATGGGGGTATT
77245788 TCGATCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (18 bp):
TACCCTATGGGGGTATTC
Found at i:77245811 original size:27 final size:27
Alignment explanation
Indices: 77245771--77245884 Score: 167
Period size: 27 Copynumber: 4.2 Consensus size: 27
77245761 GGGGGTATTC
*
77245771 TACCCTATGGGGGTATTTCGATCATTT
1 TACCCTATGAGGGTATTTCGATCATTT
* *
77245798 TACCCTATGAGGGTATTTTGGTCATTT
1 TACCCTATGAGGGTATTTCGATCATTT
77245825 TACCCTATGAGGGTATTTCGATCATTT
1 TACCCTATGAGGGTATTTCGATCATTT
* *
77245852 TACCCTATGGGGGTAGTTC-AGTCATTT
1 TACCCTATGAGGGTATTTCGA-TCATTT
77245879 TACCCT
1 TACCCT
77245885 GTAACACCCC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (27 bp):
TACCCTATGAGGGTATTTCGATCATTT
Found at i:77246060 original size:22 final size:22
Alignment explanation
Indices: 77246019--77246060 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
77246009 TCGTGATTTA
*
77246019 AAAAGTTATTCCTTTTAAAAAC
1 AAAAGTTATTCCTTTCAAAAAC
77246041 AAAAGTTATTACC-TTCAAAA
1 AAAAGTTATT-CCTTTCAAAA
77246061 CCTTGTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (22 bp):
AAAAGTTATTCCTTTCAAAAAC
Found at i:77246651 original size:27 final size:27
Alignment explanation
Indices: 77246611--77246666 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
77246601 CAATAACAGA
* * *
77246611 ACAGAACAATGTGGGCTTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCAAAT
77246638 ACAGAACAAGGTGGGCCTTAGCCAAAT
1 ACAGAACAAGGTGGGCCTTAGCCAAAT
77246665 AC
1 AC
77246667 CATATTAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCTTAGCCAAAT
Found at i:77246885 original size:26 final size:26
Alignment explanation
Indices: 77246818--77246869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
77246808 CCTAAACAAC
* *
77246818 AATATTGCAGCAAAGTTGCCAGTAAT
1 AATAATGCAGCAAAGCTGCCAGTAAT
77246844 AATAATGCAGCAAAGCTGCCAG-AAT
1 AATAATGCAGCAAAGCTGCCAGTAAT
77246869 A
1 A
77246870 GTATATGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.21
Consensus pattern (26 bp):
AATAATGCAGCAAAGCTGCCAGTAAT
Found at i:77247123 original size:27 final size:27
Alignment explanation
Indices: 77247109--77247225 Score: 103
Period size: 27 Copynumber: 4.3 Consensus size: 27
77247099 TTTTACCATA
77247109 TAAGGGTATTTCAGTAATTTTCCAAAC
1 TAAGGGTATTTCAGTAATTTTCCAAAC
* * **
77247136 TAAGGGTATTT-TGATAACTTTGTAAAC
1 TAAGGGTATTTCAG-TAATTTTCCAAAC
* * * *
77247163 TAGGGGTACTTT-GGCAATTTTGCAAAC
1 TAAGGGTA-TTTCAGTAATTTTCCAAAC
* *
77247190 TAAGGGTATTTCGGTAATTTTGCAAAC
1 TAAGGGTATTTCAGTAATTTTCCAAAC
*
77247217 TGAGGGTAT
1 TAAGGGTAT
77247226 GTAACACCCC
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 67 0.89
28 4 0.05
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (27 bp):
TAAGGGTATTTCAGTAATTTTCCAAAC
Found at i:77255379 original size:169 final size:169
Alignment explanation
Indices: 77255100--77255436 Score: 665
Period size: 169 Copynumber: 2.0 Consensus size: 169
77255090 CCTCAATGTT
77255100 GGGATGTTTCGAGAGTATTAACTGGAATTTTACAGGAAGTTCATTCATTCCCAAATCACGTACCT
1 GGGATGTTTCGAGAGTATTAACTGGAATTTTACAGGAAGTTCATTCATTCCCAAATCACGTACCT
77255165 TCGGAATTTAACCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT
66 TCGGAATTTAACCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT
*
77255230 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
131 TCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTAA
77255269 GGGATGTTTCGAGAGTATTAACTGGAATTTTACAGGAAGTTCATTCATTCCCAAATCACGTACCT
1 GGGATGTTTCGAGAGTATTAACTGGAATTTTACAGGAAGTTCATTCATTCCCAAATCACGTACCT
77255334 TCGGAATTTAACCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT
66 TCGGAATTTAACCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT
77255399 TCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTA
131 TCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTA
77255437 TCTCGCACAA
Statistics
Matches: 167, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 167 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (169 bp):
GGGATGTTTCGAGAGTATTAACTGGAATTTTACAGGAAGTTCATTCATTCCCAAATCACGTACCT
TCGGAATTTAACCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT
TCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTAA
Found at i:77255408 original size:40 final size:40
Alignment explanation
Indices: 77255364--77255546 Score: 193
Period size: 40 Copynumber: 4.6 Consensus size: 40
77255354 GCTCCTCGTT
*
77255364 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGT-ATCTCGCA
*
77255404 CAAATGCCTTCGGGACTTAACCCGGATTA-AGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTATCTCGCA
*
77255444 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTATCTCGCA
* * * *
77255483 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-ATC-TCGCA
77255524 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
77255547 ACATCATTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 21
0.81 0.06 0.14
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 48 0.39
40 63 0.51
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTATCTCGCA
Found at i:77255541 original size:79 final size:81
Alignment explanation
Indices: 77255364--77255547 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 81
77255354 GCTCCTCGTT
* *
77255364 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
77255428 GATTAAGTATCTCGCA
66 GATTAAGTATCTAGCA
**
77255444 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
77255505 CGGA-TATTGTCA-CTTAGCA
64 CGGATTA-AGT-ATC-TAGCA
77255524 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77255548 CATCATTCAA
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
78 16 0.18
79 54 0.59
80 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATTAAGTATCTAGCA
Found at i:77256738 original size:27 final size:27
Alignment explanation
Indices: 77256700--77257017 Score: 297
Period size: 27 Copynumber: 11.8 Consensus size: 27
77256690 AAGACCTCGA
* *
77256700 ATTGTAAAATTACCGAAATACCATCGG
1 ATTGTAAAATTACCGAAATACCCTCAG
77256727 ATTGTAAAATTACC-AATATA-CCTCAG
1 ATTGTAAAATTACCGAA-ATACCCTCAG
* *
77256753 TTTGTAAAATTACCAAAATACCCTCAG
1 ATTGTAAAATTACCGAAATACCCTCAG
**
77256780 ATTGTAAAATTACTAAAATACCC-CTAG
1 ATTGTAAAATTACCGAAATACCCTC-AG
* *** *
77256807 TTTGTAAAATTATTAAAATACCCTTAG
1 ATTGTAAAATTACCGAAATACCCTCAG
*
77256834 ATTGTAAAATTACTGAAATACCCTC-G
1 ATTGTAAAATTACCGAAATACCCTCAG
*
77256860 ATTTGTAAAATTACCGAAATACTCTCAG
1 A-TTGTAAAATTACCGAAATACCCTCAG
* * * *
77256888 ATTGTAAAATTATCAAAATACCCCCGG
1 ATTGTAAAATTACCGAAATACCCTCAG
* * * *
77256915 TTTGTAAAATTACTGAAGTACCCCCAG
1 ATTGTAAAATTACCGAAATACCCTCAG
* *
77256942 TTTGTAAAATTACCGAAATATCCC-CGG
1 ATTGTAAAATTACCGAAATA-CCCTCAG
* * *
77256969 TTTGTAAAATTATCGAAATACCCT-TG
1 ATTGTAAAATTACCGAAATACCCTCAG
* *
77256995 TAGTGTAAAATTATCGAAATACC
1 -ATTGTAAAATTACCGAAATACC
77257018 TTTGTAGGGT
Statistics
Matches: 249, Mismatches: 32, Indels: 20
0.83 0.11 0.07
Matches are distributed among these distances:
26 29 0.12
27 215 0.86
28 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
ATTGTAAAATTACCGAAATACCCTCAG
Found at i:77256827 original size:54 final size:53
Alignment explanation
Indices: 77256701--77256992 Score: 327
Period size: 54 Copynumber: 5.4 Consensus size: 53
77256691 AGACCTCGAA
* * * * *
77256701 TTGTAAAATTACCGAAATACCATCGGATTGTAAAATTACCAATATACCTCAGT
1 TTGTAAAATTACCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCCAGT
*
77256754 TTGTAAAATTACCAAAATACCCTCAGATTGTAAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCC-AGT
*** * *
77256808 TTGTAAAATTATTAAAATACCCTTAGATTGTAAAATTACTGAAATACCCTC-GAT
1 TTGTAAAATTACCGAAATACCCTCAGATTGTAAAATTACTAAAATACCC-CAG-T
* *
77256862 TTGTAAAATTACCGAAATACTCTCAGATTGTAAAATTA-TCAAAATACCCCCGGT
1 TTGTAAAATTACCGAAATACCCTCAGATTGTAAAATTACT-AAAATA-CCCCAGT
* * * * ** *
77256916 TTGTAAAATTACTGAAGTACCCCCAGTTTGTAAAATTACCGAAATATCCCCGGT
1 TTGTAAAATTACCGAAATACCCTCAGATTGTAAAATTACTAAAATA-CCCCAGT
*
77256970 TTGTAAAATTATCGAAATACCCT
1 TTGTAAAATTACCGAAATACCCT
77256993 TGTAGTGTAA
Statistics
Matches: 204, Mismatches: 28, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
53 46 0.23
54 153 0.75
55 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (53 bp):
TTGTAAAATTACCGAAATACCCTCAGATTGTAAAATTACTAAAATACCCCAGT
Found at i:77257434 original size:22 final size:22
Alignment explanation
Indices: 77257383--77257445 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
77257373 CTACTTAATC
77257383 TGATTATGGCTCTGTGCCAACCT
1 TGATTATGGCTCTGTG-CAACCT
* * **
77257406 T-AATATGGCTCTGTGCTATGT
1 TGATTATGGCTCTGTGCAACCT
*
77257427 TGATTATGGCTTTGTGCAA
1 TGATTATGGCTCTGTGCAA
77257446 ATCGTATTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 4 0.12
22 27 0.84
23 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.40
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCAACCT
Found at i:77257496 original size:27 final size:27
Alignment explanation
Indices: 77257436--77257511 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
77257426 TTGATTATGG
* * *
77257436 CTTTGTGCAAATCGTATTTACCAATGG
1 CTTTGTGCCAATCATATTTACCAATGA
* * *
77257463 CTATGTGCCAATCATATTTATCGATGA
1 CTTTGTGCCAATCATATTTACCAATGA
*
77257490 CTTTGTGCCTAT-ATATTTACCA
1 CTTTGTGCCAATCATATTTACCA
77257512 TGGCTGTGTG
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 8 0.21
27 31 0.79
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (27 bp):
CTTTGTGCCAATCATATTTACCAATGA
Found at i:77257871 original size:27 final size:27
Alignment explanation
Indices: 77257803--77257871 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
77257793 TTGTTACTGA
* * **
77257803 GATGGGC-TAGGCCCAATTGATTCTGT
1 GATGGGCTTTGGCCCAAATGATAATGT
* * *
77257829 TATGGGCTGTGACCCAAATGATAATGT
1 GATGGGCTTTGGCCCAAATGATAATGT
77257856 GATGGGCTTTGGCCCA
1 GATGGGCTTTGGCCCA
77257872 CTTATGCTCT
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
GATGGGCTTTGGCCCAAATGATAATGT
Found at i:77258684 original size:42 final size:44
Alignment explanation
Indices: 77258620--77258739 Score: 154
Period size: 44 Copynumber: 2.8 Consensus size: 44
77258610 AGCTCATACA
*
77258620 ATGCCAATGTCCTAGACGTGGTCTTACAC-AAAATCA-AAGACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAATCATAAGACG
* * * *
77258662 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAATCATAAGACG
* * *
77258706 ATGTCAACGTCCCAGACGTGGTCTTACATGAAAA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAA
77258740 CACATATCGG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 26 0.40
43 6 0.09
44 33 0.51
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAAATCATAAGACG
Found at i:77261499 original size:48 final size:48
Alignment explanation
Indices: 77261267--77261486 Score: 251
Period size: 48 Copynumber: 4.6 Consensus size: 48
77261257 TGAGATCTCA
* ** * *** *
77261267 TGTAAGACCATATCTGGGACATGGCATCGGTATTCGAGATGAAAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTT-GATATGTGTGCCAG
* * *
77261316 AGTAAGACCATGTCTGAGACATGGCATCGGCGTTGATATGTGTACCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* *** **
77261364 TGTAAGACCCTGTCTCAAACATGGCATCAACGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* * *
77261412 TGTAAGACCTTGTCTGGGACATGGCATTGGCGTTGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
77261460 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
77261487 TGGCACTGAT
Statistics
Matches: 144, Mismatches: 27, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
48 115 0.80
49 29 0.20
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
Found at i:77261514 original size:48 final size:47
Alignment explanation
Indices: 77261269--77261573 Score: 136
Period size: 48 Copynumber: 6.5 Consensus size: 47
77261259 AGATCTCATG
* * * * * ** *
77261269 TAAGACCATATCTGGGACATGGCATCGGTATTCGAGATGAAAGCTAGA
1 TAAGACCATGTCTGGGACATGGCATTGGCACT-GATATGAGTGCTATA
* * ** * * * *
77261317 GTAAGACCATGTCTGAGACATGGCATCGGCGTTGATATGTGTACCAGTG
1 -TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGTGCTA-TA
* *** *** ** * * *
77261366 TAAGACCCTGTCTCAAACATGGCATCAACGTTGATATGTGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGTGCTA-TA
* ** * *
77261414 TAAGACCTTGTCTGGGACATGGCATTGGCGTTGATATGTGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGTGCTA-TA
*
77261462 TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGACTTCT-TA
1 TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAG--TGCTATA
* * * * * * *
77261510 TAAGACCATATATGGGATATGGCATCGGCA-TG-T-GGA-T-CCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGTGCTATA
77261552 TAAGACCATGTCTGGGACATGG
1 TAAGACCATGTCTGGGACATGG
77261574 ATTTGGTACT
Statistics
Matches: 210, Mismatches: 42, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
41 1 0.00
42 21 0.10
45 2 0.01
46 1 0.00
47 2 0.01
48 152 0.72
49 28 0.13
50 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGTGCTATA
Found at i:77266702 original size:15 final size:16
Alignment explanation
Indices: 77266669--77266706 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
77266659 TTGGAATAAA
*
77266669 TTGAATGAAAATATGT
1 TTGAATGAAAATATAT
*
77266685 TTGAATGAAATTA-AT
1 TTGAATGAAAATATAT
77266700 TTGAATG
1 TTGAATG
77266707 TGTTTAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (16 bp):
TTGAATGAAAATATAT
Found at i:77270695 original size:39 final size:40
Alignment explanation
Indices: 77270578--77270761 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
77270568 GCTCCTCGTT
* *
77270578 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
77270618 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
77270658 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
77270697 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
*
77270738 C-AA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77270762 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.02
39 50 0.40
40 63 0.50
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:77270722 original size:79 final size:81
Alignment explanation
Indices: 77270578--77270761 Score: 195
Period size: 79 Copynumber: 2.3 Consensus size: 81
77270568 GCTCCTCGTT
* * *
77270578 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGTACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
77270642 GAT-TTAGTAAC-TCGCA
65 GATATT-GTAACTTAGCA
**
77270658 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACCC
*
77270720 GGATATTGTCACTTAGCA
64 GGATATTGTAACTTAGCA
*
77270738 C-AA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTC-GGGCTTAGCCCGGA
77270762 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
78 11 0.12
79 57 0.63
80 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCA
Found at i:77271620 original size:42 final size:42
Alignment explanation
Indices: 77271561--77271641 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
77271551 CACAACCTCT
* *
77271561 ACCTAGGTCGAATCTTAACTCATCCTCATGTCTCATCACTCC
1 ACCTAGGCCGAATCTTAACTCATCCTCATGCCTCATCACTCC
*
77271603 ACCTAGGCCGAATCTTAACTCATCTTCATGCCTCATCAC
1 ACCTAGGCCGAATCTTAACTCATCCTCATGCCTCATCAC
77271642 CACAACATCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.25, C:0.36, G:0.10, T:0.30
Consensus pattern (42 bp):
ACCTAGGCCGAATCTTAACTCATCCTCATGCCTCATCACTCC
Found at i:77275946 original size:78 final size:78
Alignment explanation
Indices: 77275857--77276011 Score: 301
Period size: 78 Copynumber: 2.0 Consensus size: 78
77275847 CCACCACCAG
77275857 CATTGCCCGTATTTTCAGATGGTCTACCTCGAGCAGTAGTAGCACCCGGTTTCCCACTCTGATTT
1 CATTGCCCGTATTTTCAGATGGTCTACCTCGAGCAGTAGTAGCACCCGGTTTCCCACTCTGATTT
*
77275922 TCATTCTGTTCAA
66 ACATTCTGTTCAA
77275935 CATTGCCCGTATTTTCAGATGGTCTACCTCGAGCAGTAGTAGCACCCGGTTTCCCACTCTGATTT
1 CATTGCCCGTATTTTCAGATGGTCTACCTCGAGCAGTAGTAGCACCCGGTTTCCCACTCTGATTT
77276000 ACATTCTGTTCA
66 ACATTCTGTTCA
77276012 GACAACCTCG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (78 bp):
CATTGCCCGTATTTTCAGATGGTCTACCTCGAGCAGTAGTAGCACCCGGTTTCCCACTCTGATTT
ACATTCTGTTCAA
Found at i:77277652 original size:74 final size:74
Alignment explanation
Indices: 77277531--77277678 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
77277521 ACTACACTGA
* *
77277531 CCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCT
1 CCTTTGCCCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCT
*
77277596 ATGGAAACT
66 ATGAAAACT
* *
77277605 CCTTTGCCCATTACGACTTGGATATCTCCCTGCACGGGGCTTCAATACTGATGCCGTTTGTTTCT
1 CCTTTGCCCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCT
77277670 ATGAAAACT
66 ATGAAAACT
77277679 AGACTCAGAG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (74 bp):
CCTTTGCCCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCT
ATGAAAACT
Found at i:77278704 original size:27 final size:27
Alignment explanation
Indices: 77278674--77278851 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77278664 ATATTGAGTC
* * * *
77278674 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77278701 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77278728 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77278756 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77278783 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77278810 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77278837 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77278852 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77278813 original size:82 final size:81
Alignment explanation
Indices: 77278695--77278850 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77278685 TGCTATATAA
* *
77278695 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77278760 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77278777 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77278841 CACTTAGTGC
65 CACTTAGTGC
77278851 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77281604 original size:56 final size:57
Alignment explanation
Indices: 77281511--77281618 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 57
77281501 ATATATATGG
* * * *
77281511 CCCACTAGGCCCAATCTCTTTCATATGGCCCATTAGGCCC-ATTCACATTTATGTGA
1 CCCACTAGGCCCAATCACATTCATATGGCCCACTAGGCCCAAATCACATTTATGTGA
*
77281567 CCCATTAGGCCCATATCACATTCATATGG-CCACTAGGCCCAAATCACATTTA
1 CCCACTAGGCCCA-ATCACATTCATATGGCCCACTAGGCCCAAATCACATTTA
77281619 CAATCATGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 22 0.49
57 23 0.51
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (57 bp):
CCCACTAGGCCCAATCACATTCATATGGCCCACTAGGCCCAAATCACATTTATGTGA
Found at i:77281614 original size:28 final size:28
Alignment explanation
Indices: 77281505--77281616 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
77281495 ACCTATATAT
* *
77281505 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACATTC
* * *
77281533 ATATGGCCCATTAGGCCCATTCACATTT
1 ATATGGCCCACTAGGCCCAATCACATTC
* * *
77281561 ATGTGACCCATTAGGCCCATATCACATTC
1 ATATGGCCCACTAGGCCCA-ATCACATTC
77281590 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCACTAGGCCC-AATCACATT
77281617 TACAATCATG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 58 0.83
29 12 0.17
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTC
Found at i:77287811 original size:17 final size:17
Alignment explanation
Indices: 77287789--77287830 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
77287779 AAGTAAACAG
77287789 AGTAAGCTGTAAAGCTT
1 AGTAAGCTGTAAAGCTT
77287806 AGTAAGCTGTAAAGCTT
1 AGTAAGCTGTAAAGCTT
77287823 AGTAAGCT
1 AGTAAGCT
77287831 CATATGCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
AGTAAGCTGTAAAGCTT
Found at i:77292017 original size:24 final size:25
Alignment explanation
Indices: 77291964--77292018 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
77291954 TGTTTTTATT
*
77291964 TAATTTAACATTAAAAACCTATTTAC
1 TAATTTAACATTAAAAA-CTATTTAA
77291990 TAATTTAAGC-TTAAAAA-TATTTAA
1 TAATTTAA-CATTAAAAACTATTTAA
77292014 TAATT
1 TAATT
77292019 ACACTTATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 11 0.41
26 15 0.56
27 1 0.04
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (25 bp):
TAATTTAACATTAAAAACTATTTAA
Found at i:77308031 original size:28 final size:28
Alignment explanation
Indices: 77307968--77308205 Score: 345
Period size: 28 Copynumber: 8.5 Consensus size: 28
77307958 ATTTTAAGTC
* *
77307968 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77307995 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77308023 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77308051 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77308079 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77308107 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
77308135 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
77308163 CGCACACTTAGTGCTGTACA-ATTTAAACC
1 CGCACACTTAGTGC--TACATAATCAAACT
77308192 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77308206 CAATCTCATG
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.11
28 148 0.77
29 19 0.10
30 4 0.02
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:77311814 original size:27 final size:27
Alignment explanation
Indices: 77311778--77311863 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
77311768 CAAAATTAGT
77311778 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTATTTTGCCCTTATGAGGTA
*
77311805 AAATGGCTATTTTGCCCTTATG-GAGTA
1 AAATGACTATTTTGCCCTTATGAG-GTA
* *
77311832 AAATGACTGTTTTGCCCTTATAAGGTA
1 AAATGACTATTTTGCCCTTATGAGGTA
77311859 AAATG
1 AAATG
77311864 TTTGTGGGGT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 51 0.96
28 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGAGGTA
Found at i:77311952 original size:26 final size:27
Alignment explanation
Indices: 77311871--77311976 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
77311861 ATGTTTGTGG
* *
77311871 GGTAAAATGATTGTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTACCCTTATGA
* * *
77311898 GGTAAAATAATTGTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTACCCTTATGA
77311925 GGTAAAATGACTG-TTTACCCTTATGA
1 GGTAAAATGACTGTTTTACCCTTATGA
*
77311951 GGTAAAATGACTGTTTTACCCCTATG
1 GGTAAAATGACTGTTTTACCCTTATG
77311977 TGATGTATGT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.34
27 48 0.66
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTACCCTTATGA
Found at i:77311956 original size:53 final size:54
Alignment explanation
Indices: 77311871--77311976 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 54
77311861 ATGTTTGTGG
* * * * *
77311871 GGTAAAATGATTGTTTTTCCCTTATGAGGTAAAATAATTGTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTACCCTTATGAGGTAAAATAACTGTTTTACCCCTATGA
*
77311925 GGTAAAATGACTG-TTTACCCTTATGAGGTAAAATGACTGTTTTACCCCTATG
1 GGTAAAATGACTGTTTTACCCTTATGAGGTAAAATAACTGTTTTACCCCTATG
77311977 TGATGTATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 34 0.74
54 12 0.26
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (54 bp):
GGTAAAATGACTGTTTTACCCTTATGAGGTAAAATAACTGTTTTACCCCTATGA
Found at i:77312312 original size:18 final size:18
Alignment explanation
Indices: 77312291--77312360 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
77312281 ACTTGCATAT
* *
77312291 TGTTTACTATTACTGCAT
1 TGTTTACTGTTACTGCAC
**
77312309 TGTTTACTGTTACTATAC
1 TGTTTACTGTTACTGCAC
77312327 TG-TTACTGTTACTGCAC
1 TGTTTACTGTTACTGCAC
*
77312344 TATTTACTGTTACTGCA
1 TGTTTACTGTTACTGCA
77312361 ATGGGCCATG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 14 0.32
18 30 0.68
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (18 bp):
TGTTTACTGTTACTGCAC
Found at i:77326350 original size:29 final size:28
Alignment explanation
Indices: 77326284--77326377 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
77326274 AAGTCTACAT
* * *
77326284 ACATGCATATAGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*** *
77326312 TTTTTCATATGGCCCTTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
*
77326341 CCATTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
77326369 ACATTCATA
1 ACATTCATA
77326378 GTCATGCAAT
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 29 0.55
29 24 0.45
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.28
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:77326616 original size:16 final size:16
Alignment explanation
Indices: 77326595--77326625 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77326585 CAAACTTTCT
77326595 GCTTTTCAGCATTTTA
1 GCTTTTCAGCATTTTA
*
77326611 GCTTTTCGGCATTTT
1 GCTTTTCAGCATTTT
77326626 GGGATTTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.19, G:0.16, T:0.52
Consensus pattern (16 bp):
GCTTTTCAGCATTTTA
Found at i:77330722 original size:29 final size:29
Alignment explanation
Indices: 77330688--77330761 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
77330678 TAATCAACCG
*
77330688 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
77330717 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
77330746 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
77330762 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:77334104 original size:29 final size:28
Alignment explanation
Indices: 77334043--77334131 Score: 115
Period size: 28 Copynumber: 3.1 Consensus size: 28
77334033 TACATATATG
* * * *
77334043 CATATGGCTCACTAGGCCCAATCTCTTT
1 CATATGGCCCATTAGGCCCAATCACATT
* *
77334071 CATATGGCCCTTTGGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCC-AATCACATT
77334100 CATATGGCCCATTAGGCCCAATCACATT
1 CATATGGCCCATTAGGCCCAATCACATT
77334128 CATA
1 CATA
77334132 GTTATGTAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 28 0.54
29 24 0.46
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCACATT
Found at i:77346116 original size:27 final size:27
Alignment explanation
Indices: 77346074--77346219 Score: 150
Period size: 27 Copynumber: 5.4 Consensus size: 27
77346064 TGGATACGTT
*
77346074 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* **
77346101 GTAGATTTACTAAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
77346127 GATAGAATTACCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* *
77346155 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * * **
77346182 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
77346209 GTAAAATTACC
1 GTAGAATTACC
77346220 ATTTTGCCCT
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.03
27 94 0.95
28 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:77346211 original size:54 final size:54
Alignment explanation
Indices: 77346074--77346220 Score: 197
Period size: 54 Copynumber: 2.7 Consensus size: 54
77346064 TGGATACGTT
* ** *
77346074 GTAGAATTACCGAAATACCCTTGTAAGGTAGATTTACTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
* *
77346128 ATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
* * *
77346182 GTAGAATTATCGAGATACCCTTGTGGGGTA-AAATTACCA
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCA
77346221 TTTTGCCCTT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 3 0.04
54 78 0.96
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
Found at i:77347047 original size:21 final size:21
Alignment explanation
Indices: 77346994--77347050 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
77346984 ACAATATTTG
77346994 TATTTGGT-GACTTCATCACAA
1 TATTTGGTAG-CTTCATCACAA
* * * *
77347015 TATCTAGCAGCTTCGTCACAA
1 TATTTGGTAGCTTCATCACAA
77347036 TATTTGGTAGCTTCA
1 TATTTGGTAGCTTCA
77347051 CTGTAATTTC
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (21 bp):
TATTTGGTAGCTTCATCACAA
Found at i:77347253 original size:28 final size:28
Alignment explanation
Indices: 77347213--77347268 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
77347203 ATTCTGATTT
*
77347213 CTGTACTGTGCCAAGGCCCAGATAAGTC
1 CTGTACTGGGCCAAGGCCCAGATAAGTC
77347241 CTGTACTGGGCCAAGGCCCAGATAAGTC
1 CTGTACTGGGCCAAGGCCCAGATAAGTC
77347269 TGACTCTGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (28 bp):
CTGTACTGGGCCAAGGCCCAGATAAGTC
Found at i:77348521 original size:105 final size:105
Alignment explanation
Indices: 77348339--77348547 Score: 355
Period size: 105 Copynumber: 2.0 Consensus size: 105
77348329 ATGCTCAGGC
* *
77348339 TGAATCTTCATCTTCAAGACATGTGCTAGTAGCAGATGCACCGGTACCACCAGCAACGGAGGTAG
1 TGAATCTTCATCTTCAAGACATGTGCCAGCAGCAGATGCACCGGTACCACCAGCAACGGAGGTAG
77348404 AGTCTCATGATCGAGGTGCCGGGGATGATGCTCTGTCCCT
66 AGTCTCATGATCGAGGTGCCGGGGATGATGCTCTGTCCCT
* * * * *
77348444 TGAATCTTCGTCTTCAGGACATGTGCCGGCAGTAGATGCACCGGTACCACCGGCAACGGAGGTAG
1 TGAATCTTCATCTTCAAGACATGTGCCAGCAGCAGATGCACCGGTACCACCAGCAACGGAGGTAG
77348509 AGTCTCATGATCGAGGTGCCGGGGATGATGCTCTGTCCC
66 AGTCTCATGATCGAGGTGCCGGGGATGATGCTCTGTCCC
77348548 AGGCAATGCT
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (105 bp):
TGAATCTTCATCTTCAAGACATGTGCCAGCAGCAGATGCACCGGTACCACCAGCAACGGAGGTAG
AGTCTCATGATCGAGGTGCCGGGGATGATGCTCTGTCCCT
Found at i:77355596 original size:27 final size:27
Alignment explanation
Indices: 77355562--77355688 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
77355552 TGGATAAGTT
77355562 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
77355589 GTAGAATTACCAAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
77355615 GATAGAATTACTGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* *
77355643 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
77355670 GTAGAATTACCGAGATACC
1 GTAGAATTACCGAAATACC
77355689 TTTTGGGGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.03
27 83 0.94
28 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:77355646 original size:54 final size:54
Alignment explanation
Indices: 77355563--77355707 Score: 193
Period size: 54 Copynumber: 2.7 Consensus size: 54
77355553 GGATAAGTTG
* *
77355563 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGA
* * * *
77355617 TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGA
* * * *
77355671 TAGAATTACCGAGATA-CCTTTTGGGGTAAAATTACCA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCA
77355708 TTTTGCCCCT
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 16 0.21
54 62 0.79
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGA
Found at i:77356478 original size:27 final size:26
Alignment explanation
Indices: 77356426--77356485 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
77356416 CGCCACATAT
*
77356426 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGGACTAGCCACA
* *
77356452 GTATCTGTATCTGGT-GACTACGTCACA
1 ATATCTGT-TCTGGTGGACTA-GCCACA
77356479 ATATCTG
1 ATATCTG
77356486 GTAGCTTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGGACTAGCCACA
Found at i:77364995 original size:14 final size:15
Alignment explanation
Indices: 77364976--77365005 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
77364966 GGGCTATTTG
77364976 CAACTTA-AAAGCCT
1 CAACTTAGAAAGCCT
77364990 CAACTTAGAAAGCCT
1 CAACTTAGAAAGCCT
77365005 C
1 C
77365006 TAAATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.40, C:0.30, G:0.10, T:0.20
Consensus pattern (15 bp):
CAACTTAGAAAGCCT
Found at i:77377233 original size:7 final size:7
Alignment explanation
Indices: 77377205--77377254 Score: 75
Period size: 7 Copynumber: 7.1 Consensus size: 7
77377195 TTGCAGCGAC
77377205 TAGGG-T
1 TAGGGTT
77377211 TAGGGTTT
1 TAGGG-TT
*
77377219 TTGGGTT
1 TAGGGTT
77377226 TAGGGTT
1 TAGGGTT
77377233 TAGGGTT
1 TAGGGTT
77377240 TAGGGTT
1 TAGGGTT
77377247 TAGGGTT
1 TAGGGTT
77377254 T
1 T
77377255 CATTTTCTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
6 5 0.12
7 30 0.75
8 5 0.12
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.46
Consensus pattern (7 bp):
TAGGGTT
Found at i:77381457 original size:27 final size:27
Alignment explanation
Indices: 77381416--77381469 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77381406 TGTCATGTGA
* *
77381416 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
77381443 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
77381470 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:77381793 original size:49 final size:50
Alignment explanation
Indices: 77381716--77381961 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
77381706 TCTATTGTGA
*
77381716 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
* * * *
77381765 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTC
* * * * * ** *
77381816 GATCACGTGTGTAGTACTAAGGGCAGGCTATTACGTGTATCAGATGGTTG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
* * *
77381866 GGTCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCTGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
* *
77381915 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
77381962 CCTTGTCTGC
Statistics
Matches: 166, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 85 0.51
50 45 0.27
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
Found at i:77381906 original size:101 final size:98
Alignment explanation
Indices: 77381718--77381961 Score: 326
Period size: 100 Copynumber: 2.5 Consensus size: 98
77381708 TATTGTGAGG
* * *
77381718 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAAT
*
77381783 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCTGATAA-TT-GA
* * * * ** *
77381818 TCACGTGTGTAGTACTAAGGGCAGGCTATTACGTGTATCAGATGGTTGGGTCACGTGTGTAGTAA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAA
* *
77381883 TAAGTGCAGGCTACTACGTGTACCTGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCTGATAATTGA
* *
77381917 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
77381962 CCTTGTCTGC
Statistics
Matches: 122, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 38 0.31
100 42 0.34
101 42 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAAT
AAGTGCAGGCTACTACGCGTACCTGATAATTGA
Found at i:77402952 original size:22 final size:22
Alignment explanation
Indices: 77402927--77402968 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
77402917 TCCACCTAAA
77402927 AACATCAAATGGCATGTAACAT
1 AACATCAAATGGCATGTAACAT
77402949 AACATCAAATGGCATGTAAC
1 AACATCAAATGGCATGTAAC
77402969 CAATCTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.21
Consensus pattern (22 bp):
AACATCAAATGGCATGTAACAT
Found at i:77409759 original size:7 final size:7
Alignment explanation
Indices: 77409747--77409788 Score: 57
Period size: 7 Copynumber: 5.6 Consensus size: 7
77409737 AGATTTCAGC
77409747 AGTTAGA
1 AGTTAGA
77409754 AGTTAGA
1 AGTTAGA
77409761 AGTTAGA
1 AGTTAGA
77409768 AGTTATCTGA
1 AGTTA---GA
77409778 AGTTAGA
1 AGTTAGA
77409785 AGTT
1 AGTT
77409789 CTCTAGGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
7 25 0.78
10 7 0.22
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.33
Consensus pattern (7 bp):
AGTTAGA
Found at i:77409781 original size:17 final size:14
Alignment explanation
Indices: 77409747--77409788 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 14
77409737 AGATTTCAGC
77409747 AGTTAGAAGTTAGA
1 AGTTAGAAGTTAGA
77409761 AGTTAGAAGTTATCTGA
1 AGTTAGAAGTTA---GA
77409778 AGTTAGAAGTT
1 AGTTAGAAGTT
77409789 CTCTAGGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 12 0.48
17 13 0.52
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.33
Consensus pattern (14 bp):
AGTTAGAAGTTAGA
Found at i:77418010 original size:46 final size:45
Alignment explanation
Indices: 77417957--77418218 Score: 237
Period size: 46 Copynumber: 5.7 Consensus size: 45
77417947 TTTGTGTGCC
*
77417957 AGTGTAAGACATGTCCGGGACATGCATCGGCCACATTATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACATTATGATAGCT
*
77418003 AGTGTAAGACCATGTTTGGGACATGGCATCGG--CATTGA-GATGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACATT-ATGAT-A--GCT
* * *
77418051 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCACATTATGATAGCT
* ** * * *
77418097 AGTGTAAGACATGTCTGGGACATGCATTGGCATCAAGATGTTAACA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA-CATTATGATAGCT
** * ** *
77418143 AGTGCCAGACATGTCTGGGACATGCATCAG-TTATGA-GATATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGATA-GCT
*
77418187 AGTGTAAGACATGTCTGGGACATTCATCGGCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA
77418219 AGGGTACATG
Statistics
Matches: 173, Mismatches: 30, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 30 0.17
45 10 0.06
46 78 0.45
47 26 0.15
48 21 0.12
49 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGATAGCT
Found at i:77418075 original size:94 final size:92
Alignment explanation
Indices: 77417957--77418218 Score: 294
Period size: 94 Copynumber: 2.8 Consensus size: 92
77417947 TTTGTGTGCC
* * * * *
77417957 AGTGTAAGACATGTCCGGGACATGCATCGGCCACATTATGATAGCTAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAAAGCTAGTGTAAGA-CATGTCTGG
** ** *
77418022 GACATGGCATCGGCATTGAGATGAGGGCT
65 GACAT-GCATCGGCATCAAGATGAGAACA
77418051 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAAAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAAAGCTAGTGTAAGACATGTCTGGG
* **
77418116 ACATGCATTGGCATCAAGATGTTAACA
66 ACATGCATCGGCATCAAGATGAGAACA
** ** * * * *
77418143 AGTGCCAGACATGTCTGGGACATGCATCAG--TTATGAGATATGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAAAGCTAGTGTAAGACATGTCTGGG
*
77418206 ACATTCATCGGCA
66 ACATGCATCGGCA
77418219 AGGGTACATG
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
90 38 0.26
92 43 0.30
93 13 0.09
94 51 0.35
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAAAGCTAGTGTAAGACATGTCTGGG
ACATGCATCGGCATCAAGATGAGAACA
Found at i:77429988 original size:22 final size:22
Alignment explanation
Indices: 77429960--77430005 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
77429950 TATTGAGAAG
*
77429960 TCGAAAGCTCAATCTAACTCTT
1 TCGAAAGCTCAATCAAACTCTT
77429982 TCGAAAGCTCAATCAAACTCTT
1 TCGAAAGCTCAATCAAACTCTT
77430004 TC
1 TC
77430006 TTTTACTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (22 bp):
TCGAAAGCTCAATCAAACTCTT
Found at i:77436621 original size:174 final size:174
Alignment explanation
Indices: 77436331--77436674 Score: 564
Period size: 174 Copynumber: 2.0 Consensus size: 174
77436321 CGGGAAAAAT
**
77436331 GTCTAGAAAGTCTTTAACTGTTCTGATATCTTTAACAAATGGAACCTCTAAACCCGAAGCACTGA
1 GTCTAGAAAGTCTTTAACTGTTCTGATATCTTTAACAAACAGAACCTCTAAACCCGAAGCACTGA
77436396 TATAGGCTAGATACGCCTCACAACCCTTACGAACCAACTTCTCAGCTCTAAGTGCAAAAATCACA
66 TATAGGCTAGATACGCCTCACAACCCTTACGAACCAACTTCTCAGCTCTAAGTGCAAAAATCACA
* * *
77436461 TTTGATAGATAATTTTGATGCTCCCCAATCACAACCACCTAAAC
131 TTTGACAGATAATTCTAATGCTCCCCAATCACAACCACCTAAAC
* *
77436505 GTCTAGAAAGTCTTTAACTGTTCTGATATCTTTAACAAACAGAACGTC-AGAACTCGAAGCACTG
1 GTCTAGAAAGTCTTTAACTGTTCTGATATCTTTAACAAACAGAACCTCTA-AACCCGAAGCACTG
* * * *
77436569 ATGTAGGCTAGATACGCCTCACAACCCTTACGAACCAAGTTCTCAGCTCTAAGTGTAGAAATCAC
65 ATATAGGCTAGATACGCCTCACAACCCTTACGAACCAACTTCTCAGCTCTAAGTGCAAAAATCAC
*
77436634 ATTTGACAGATAATTCTAATGCTTCCCAATCACAACCACCT
130 ATTTGACAGATAATTCTAATGCTCCCCAATCACAACCACCT
77436675 CATTACCCTT
Statistics
Matches: 157, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
173 1 0.01
174 156 0.99
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (174 bp):
GTCTAGAAAGTCTTTAACTGTTCTGATATCTTTAACAAACAGAACCTCTAAACCCGAAGCACTGA
TATAGGCTAGATACGCCTCACAACCCTTACGAACCAACTTCTCAGCTCTAAGTGCAAAAATCACA
TTTGACAGATAATTCTAATGCTCCCCAATCACAACCACCTAAAC
Found at i:77454300 original size:2 final size:2
Alignment explanation
Indices: 77454293--77454339 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
77454283 GAATATGCTT
*
77454293 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
77454335 TC TC T
1 TC TC T
77454340 TCTTACAAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.47, G:0.02, T:0.51
Consensus pattern (2 bp):
TC
Found at i:77456905 original size:24 final size:24
Alignment explanation
Indices: 77456873--77456918 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
77456863 TTTCTAAAAT
* *
77456873 ATTTGGTATTTATTAGTATAATAC
1 ATTTAGTATTTATTAGCATAATAC
77456897 ATTTAGTATTTATTAGCATAAT
1 ATTTAGTATTTATTAGCATAAT
77456919 TTATTTGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.50
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAC
Found at i:77456924 original size:24 final size:24
Alignment explanation
Indices: 77456871--77456924 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
77456861 TCTTTCTAAA
* *
77456871 ATATTTGGTATTTATTAGTATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
77456895 ACATTTAGTATTTATTAGCATAAT
1 ATATTTAGTATTTATTAGCATAAT
*
77456919 TTATTT
1 ATATTT
77456925 GACCTACTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (24 bp):
ATATTTAGTATTTATTAGCATAAT
Found at i:77461862 original size:24 final size:24
Alignment explanation
Indices: 77461809--77461862 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
77461799 TTTGTAGGTC
* *
77461809 AAATAAATTATGCTAATAAATACT
1 AAATATATTATACTAATAAATACT
77461833 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
77461857 AAATAT
1 AAATAT
77461863 TTTAGAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:77466626 original size:46 final size:48
Alignment explanation
Indices: 77466558--77466778 Score: 160
Period size: 49 Copynumber: 4.6 Consensus size: 48
77466548 TTTGGGTGCC
77466558 AGTGTAAGACATGTCTGAGACAT-GCATCGGCCTCAAGATGT-A-AGCT
1 AGTGTAAGACATGTCTG-GACATGGCATCGGCCTCAAGATGTGAGAGCT
** *
77466604 AGTGTAAGACATGTCTAGGACATGGCATCGGCAC-GGATATGTGAGAGCT
1 AGTGTAAGACATGTCT-GGACATGGCATCGGC-CTCAAGATGTGAGAGCT
* * *
77466653 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC--GATTTCGATAG-T
1 AGTGTAAGA-CATGTCT-GGACATGGCATCGGCCTCAAGATGT-GAGAGCT
* * * *
77466701 CAGCGTAAGACCATGTCTGGGACATGGCATC-GACT--TGATG-GATGAGCC
1 -AGTGTAAGA-CATGTCT-GGACATGGCATCGGCCTCAAGATGTGA-GAGCT
77466749 AGTGTAAGACCAT-TCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCT-GGACATGGCATCG
77466779 ACATTACACC
Statistics
Matches: 146, Mismatches: 16, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
46 39 0.27
47 28 0.19
48 12 0.08
49 46 0.32
50 21 0.14
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGACATGGCATCGGCCTCAAGATGTGAGAGCT
Found at i:77466779 original size:46 final size:48
Alignment explanation
Indices: 77466555--77466780 Score: 175
Period size: 46 Copynumber: 4.8 Consensus size: 48
77466545 TTATTTGGGT
* * *
77466555 GCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCTCAAGA-T-G-TAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTC--GATTCGATGA
* * * * *
77466601 GCTAGTGTAAGA-CATGTCTAGGACATGGCATCGGCACGGATATGTGA-GA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTC-GAT-T-CGATGA
* * *
77466650 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA-TTCGATGA
* * * *
77466699 GTCAGCGTAAGACCATGTCTGGGACATGGCATCGACTTGA-TGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATTCGATGA
77466746 GCCAGTGTAAGACCAT-TCTGGGACATGGCATCGAC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
77466781 ATTACACCCT
Statistics
Matches: 148, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.01
46 49 0.33
47 21 0.14
48 5 0.03
49 46 0.31
50 21 0.14
51 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATTCGATGA
Found at i:77468203 original size:31 final size:32
Alignment explanation
Indices: 77468139--77468203 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
77468129 TATTTCACAC
*
77468139 TTCATATTTCATAACACTGGGCCCCGAAGCCTT
1 TTCATATTTCATAACACTGGG-CCCAAAGCCTT
**
77468172 TTCATATTTCATATTACTGGG-CCAAAGCCTT
1 TTCATATTTCATAACACTGGGCCCAAAGCCTT
77468203 T
1 T
77468204 ACTTAAACGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 10 0.34
33 19 0.66
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (32 bp):
TTCATATTTCATAACACTGGGCCCAAAGCCTT
Found at i:77468447 original size:24 final size:24
Alignment explanation
Indices: 77468394--77468511 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
77468384 GCTTTATCGT
*
77468394 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
77468419 GTAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77468443 ATAACTGGTGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77468466 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77468489 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77468512 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 45 0.54
24 28 0.33
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77468593 original size:20 final size:20
Alignment explanation
Indices: 77468564--77468627 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
77468554 TGAATACAGT
77468564 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
* * * *
77468584 ATGTGTATATCATATATGTT
1 ATGTGCATATCATACATATC
*
77468604 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATATC
77468624 ATGT
1 ATGT
77468628 TTATCAAAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:77470116 original size:31 final size:32
Alignment explanation
Indices: 77470052--77470116 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
77470042 TATTTCACAC
*
77470052 TTCATATTTCATAACACTGGGCCCCGAAGCCTT
1 TTCATATTTCATAACACTGGG-CCCAAAGCCTT
**
77470085 TTCATATTTCATATTACTGGG-CCAAAGCCTT
1 TTCATATTTCATAACACTGGGCCCAAAGCCTT
77470116 T
1 T
77470117 ACTTAAACGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 10 0.34
33 19 0.66
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (32 bp):
TTCATATTTCATAACACTGGGCCCAAAGCCTT
Found at i:77470351 original size:25 final size:24
Alignment explanation
Indices: 77470309--77470480 Score: 238
Period size: 25 Copynumber: 7.0 Consensus size: 24
77470299 GCTTTATCAT
* *
77470309 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTC
*
77470334 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTC
77470358 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
77470383 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
77470408 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
77470433 ATAACTAGGGCATAAGCCCTATATC
1 ATAACTGGGGCATAAGCCCT-TTTC
77470458 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77470481 ACACTTCCTC
Statistics
Matches: 138, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
24 34 0.25
25 103 0.75
26 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:77470555 original size:20 final size:20
Alignment explanation
Indices: 77470530--77470596 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
77470520 TTATGAATAC
77470530 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77470550 ATCATGTGCATATCATACAC
1 ATCATGTGCATATCATACAT
* *
77470570 GTTATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77470590 ACCATGT
1 ATCATGT
77470597 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77475906 original size:20 final size:22
Alignment explanation
Indices: 77475877--77475918 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
77475867 ATTTCTTATC
*
77475877 TTCTAGTCC-TTT-CCTTTCTT
1 TTCTAATCCTTTTACCTTTCTT
77475897 TTCTAATCCTTTTACCTTTCTT
1 TTCTAATCCTTTTACCTTTCTT
77475919 CTTTCCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 3 0.16
22 8 0.42
ACGTcount: A:0.10, C:0.29, G:0.02, T:0.60
Consensus pattern (22 bp):
TTCTAATCCTTTTACCTTTCTT
Found at i:77480288 original size:94 final size:93
Alignment explanation
Indices: 77480128--77480318 Score: 364
Period size: 94 Copynumber: 2.0 Consensus size: 93
77480118 GAAATTGCAT
*
77480128 TTGAGGTAAGTCCGTGTGATTAAATAGCATGATATTTATGCCATTGTTGTATACTTGAAAATCTA
1 TTGAGGTAAGTCCGTGTGATTAAATAGCATGATATTTATGCCATTGTTATATACTTGAAAATCTA
77480193 TCTTTCCATGATTGTATTAAAGTTTAGG
66 TCTTTCCATGATTGTATTAAAGTTTAGG
77480221 TTGAGGTAAGTCCGTGTGATTAAATGAGCATGATATTTATGCCATTGTTATATACTTGAAAATCT
1 TTGAGGTAAGTCCGTGTGATTAAAT-AGCATGATATTTATGCCATTGTTATATACTTGAAAATCT
77480286 ATCTTTCCATGATTGTATTAAAGTTTAGG
65 ATCTTTCCATGATTGTATTAAAGTTTAGG
77480315 TTGA
1 TTGA
77480319 TGATATTGTA
Statistics
Matches: 96, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
93 25 0.26
94 71 0.74
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (93 bp):
TTGAGGTAAGTCCGTGTGATTAAATAGCATGATATTTATGCCATTGTTATATACTTGAAAATCTA
TCTTTCCATGATTGTATTAAAGTTTAGG
Found at i:77480671 original size:46 final size:46
Alignment explanation
Indices: 77480596--77480685 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
77480586 TTATTTGTGT
* *
77480596 GCCAATGTAAGACATGTCTGGGATATGCATCAGTCT-CGAGATGTAA
1 GCCAATGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATGTAA
*
77480642 GCCAATGTAAGACATGTCTGGGACGTGCATCGGCTACGAGATGT
1 GCCAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT
77480686 GTCAGCGTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 3 0.08
46 37 0.93
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCCAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAA
Found at i:77501182 original size:27 final size:27
Alignment explanation
Indices: 77501152--77501213 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
77501142 ATTGTAGTGC
* *
77501152 AAAATGACTGTAATGCCCCTATAGGGT
1 AAAATGACTATAATACCCCTATAGGGT
* *
77501179 AAAATGACTATAATACCCCTGTATGGT
1 AAAATGACTATAATACCCCTATAGGGT
*
77501206 AGAATGAC
1 AAAATGAC
77501214 GATTATGCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAAATGACTATAATACCCCTATAGGGT
Found at i:77501532 original size:95 final size:96
Alignment explanation
Indices: 77501359--77501562 Score: 272
Period size: 95 Copynumber: 2.1 Consensus size: 96
77501349 GTGTACTGCC
* * * *
77501359 TGTAGCCGTCTTGTATAAGGCTTTTAGCCTTTCTGCGATACTTATGGCTTATAGCTGTTTTATTA
1 TGTAGTCGTCCTGTATAAGGCTTTTAGCCTTCCTGCGATACTTATGGCTTATAGCTGTTCTATTA
*
77501424 ACTAGCCGTGTTGCTGCGATATTTACGG-CT
66 ACTAGCCATGTTGCTGCGATATTTACGGCCT
* * *
77501454 TGTAGTCGTCCTGTATATGGCTTTTAGCCTTCCTGTGATACTTATGGCTTATAG-TCGTTCTGTT
1 TGTAGTCGTCCTGTATAAGGCTTTTAGCCTTCCTGCGATACTTATGGCTTATAGCT-GTTCTATT
*
77501518 AACT-GGCATCGTTGCTGCGATATTTACGGCCT
65 AACTAGCCAT-GTTGCTGCGATATTTACGGCCT
*
77501550 T-TAGTCATCCTGT
1 TGTAGTCGTCCTGT
77501563 CTACGACGTT
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
94 4 0.04
95 89 0.93
96 3 0.03
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (96 bp):
TGTAGTCGTCCTGTATAAGGCTTTTAGCCTTCCTGCGATACTTATGGCTTATAGCTGTTCTATTA
ACTAGCCATGTTGCTGCGATATTTACGGCCT
Found at i:77521804 original size:27 final size:27
Alignment explanation
Indices: 77521767--77521951 Score: 244
Period size: 27 Copynumber: 6.8 Consensus size: 27
77521757 CAAAATTGAT
*
77521767 AAATGACTGTTTTGCCTTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* *
77521794 AAATGATTGTTTTGCCCTTGTGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
77521821 AAATGACTGTTTTGCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
77521848 AAATGACTGTTTTGCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* *
77521875 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* * * **
77521902 AAATGATTGTTTTTTCCCTTTTATGGTA
1 AAATGACTG-TTTTGCCCTTATGGGGTA
* * *
77521930 AGATGACTGTTTTACCCCTATG
1 AAATGACTGTTTTGCCCTTATG
77521952 TGATGTATGT
Statistics
Matches: 138, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 117 0.85
28 21 0.15
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.41
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGGGGTA
Found at i:77523333 original size:20 final size:19
Alignment explanation
Indices: 77523310--77523384 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 19
77523300 AGCATGAATA
77523310 TGCTATCAAGAGCATCGTAG
1 TGCTATCAAGAGCA-CGTAG
* *
77523330 TGCTAACTAA-AGCACGAATG
1 TGCTATC-AAGAGCACGTA-G
* *
77523350 TGCTATCAGGAGCACCATAG
1 TGCTATCAAGAGCA-CGTAG
*
77523370 TGCTATCAGGAGCAC
1 TGCTATCAAGAGCAC
77523385 TTATTCAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
19 5 0.11
20 36 0.80
21 4 0.09
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (19 bp):
TGCTATCAAGAGCACGTAG
Found at i:77523384 original size:40 final size:40
Alignment explanation
Indices: 77523294--77523384 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
77523284 TCGTAATGCA
* * *
77523294 AACAGGAGCATGAATATGCTATCAAGAGCATCGTAGTGCT
1 AACAGGAGCACGAATATGCTATCAAGAGCACCATAGTGCT
* * *
77523334 AACTA-AAGCACGAATGTGCTATCAGGAGCACCATAGTGCT
1 AAC-AGGAGCACGAATATGCTATCAAGAGCACCATAGTGCT
*
77523374 ATCAGGAGCAC
1 AACAGGAGCAC
77523385 TTATTCAAGA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.02
40 39 0.95
41 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (40 bp):
AACAGGAGCACGAATATGCTATCAAGAGCACCATAGTGCT
Found at i:77526721 original size:84 final size:84
Alignment explanation
Indices: 77526573--77526726 Score: 195
Period size: 84 Copynumber: 1.8 Consensus size: 84
77526563 AAGTCATACA
* * * * *
77526573 ATGCCATATCCCGGATATGGTTTACATGTAATCTCATATCGATGCTAATAGCCCAGCTATGGTCT
1 ATGCCATATCCCAGACATGGTTTACACGTAATATCATATCGATGCTAATAGCCCAGATATGGTCT
77526638 TACACAAAATTTCGAATCG
66 TACACAAAATTTCGAATCG
* * * *
77526657 ATGCCATGTCCCAGACATGGTCTTACACGTAATATCATA-CTGATGC-CATATCCTAGATATGGT
1 ATGCCATATCCCAGACATGGT-TTACACGTAATATCATATC-GATGCTAATAGCCCAGATATGGT
77526720 CTTACAC
64 CTTACAC
77526727 GTATTCTCAT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
84 39 0.66
85 20 0.34
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTTTACACGTAATATCATATCGATGCTAATAGCCCAGATATGGTCT
TACACAAAATTTCGAATCG
Found at i:77530253 original size:20 final size:20
Alignment explanation
Indices: 77530228--77530265 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
77530218 AAAACGAAAA
77530228 CAAATAACAA-TAACATCTAC
1 CAAATAA-AACTAACATCTAC
77530248 CAAATAAAACTAACATCT
1 CAAATAAAACTAACATCT
77530266 TGCTTGGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (20 bp):
CAAATAAAACTAACATCTAC
Found at i:77530563 original size:39 final size:39
Alignment explanation
Indices: 77530520--77530689 Score: 218
Period size: 39 Copynumber: 4.4 Consensus size: 39
77530510 TTTAATTATG
* *
77530520 TATCACATTACACATATAATCACATAACATTTAAGCATA
1 TATCACAATACTCATATAATCACATAACATTTAAGCATA
* *
77530559 TATCACAATACCCATATAACCACATAACATTTAAGCATA
1 TATCACAATACTCATATAATCACATAACATTTAAGCATA
* * *
77530598 TATTACAATACTCATTTAATCGCAT-AC-TGTTCAAGCATA
1 TATCACAATACTCATATAATCACATAACAT-TT-AAGCATA
* * *
77530637 TATCACAGTACTCATATAATCACAAAACATTCAAGCATA
1 TATCACAATACTCATATAATCACATAACATTTAAGCATA
77530676 TATCACAATACTCA
1 TATCACAATACTCA
77530690 AAAACAAGTT
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
37 1 0.01
38 4 0.04
39 103 0.92
40 3 0.03
41 1 0.01
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.29
Consensus pattern (39 bp):
TATCACAATACTCATATAATCACATAACATTTAAGCATA
Found at i:77534889 original size:30 final size:30
Alignment explanation
Indices: 77534831--77534889 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
77534821 ATTTTTGGGC
* **
77534831 CTAGGGGTAAAATGGTCATTATGTCAAAAT
1 CTAGGGGCAAAATGGTCATTATACCAAAAT
*
77534861 CTAGGGGCAAAATGGTCATTTTACCAAAA
1 CTAGGGGCAAAATGGTCATTATACCAAAA
77534890 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTATACCAAAAT
Found at i:77539414 original size:79 final size:81
Alignment explanation
Indices: 77539278--77539462 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
77539268 TTGAATGATG
*
77539278 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
77539342 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
77539357 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
77539419 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
77539437 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77539463 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:77539476 original size:40 final size:40
Alignment explanation
Indices: 77539279--77539462 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
77539269 TGAATGATGT
* * * *
77539279 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
77539319 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
77539359 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77539397 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77539438 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77539463 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:77539484 original size:79 final size:79
Alignment explanation
Indices: 77539279--77539495 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
77539269 TGAATGATGT
** * * * **
77539279 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
77539342 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
77539359 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
77539424 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
77539438 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
77539496 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:77553194 original size:20 final size:20
Alignment explanation
Indices: 77553134--77553188 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
77553124 ATAAATATGG
77553134 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
77553154 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77553174 TATGTATGATATGCA
1 TATGTATGATATGCA
77553189 AGTGATGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:77553275 original size:23 final size:23
Alignment explanation
Indices: 77553245--77553339 Score: 163
Period size: 23 Copynumber: 4.1 Consensus size: 23
77553235 AGGAAGTGAA
* *
77553245 AAAGGGCTTGTGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
77553268 AAAGGGCTTATGCCCCACTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77553291 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77553314 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77553337 AAA
1 AAA
77553340 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:77553356 original size:25 final size:23
Alignment explanation
Indices: 77553245--77553356 Score: 129
Period size: 23 Copynumber: 4.8 Consensus size: 23
77553235 AGGAAGTGAA
*
77553245 AAAGGGCTT-GTGCCCCAATTATT
1 AAAGGGCTTAG-GCCCCAGTTATT
* *
77553268 AAAGGGCTTATGCCCCACTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
*
77553291 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
*
77553314 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
77553337 AAAAGAGGC-TAGGCCTCCAG
1 -AAAG-GGCTTAGGCC-CCAG
77553357 ATATATGATA
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 65 0.80
24 9 0.11
25 7 0.09
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTAGGCCCCAGTTATT
Found at i:77557435 original size:20 final size:20
Alignment explanation
Indices: 77557369--77557435 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
77557359 ATTTTGATAA
*
77557369 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77557389 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
77557409 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77557429 ACGTGAT
1 ACATGAT
77557436 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77557516 original size:23 final size:23
Alignment explanation
Indices: 77557486--77558317 Score: 1621
Period size: 23 Copynumber: 36.1 Consensus size: 23
77557476 AGGAAGTGAA
*
77557486 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557509 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557532 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557555 AAAAGGGC-TATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
77557578 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557601 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557624 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557647 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557670 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557693 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557716 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557739 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557762 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557785 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557808 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557831 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557854 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557877 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557900 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557923 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557946 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557969 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77557992 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558015 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558038 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558061 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558084 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558107 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558130 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558153 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558176 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558199 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558222 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558245 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77558268 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
77558291 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
77558315 AAA
1 AAA
77558318 AGAGGCTAGG
Statistics
Matches: 804, Mismatches: 2, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
22 7 0.01
23 768 0.96
24 29 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:77561475 original size:28 final size:29
Alignment explanation
Indices: 77561440--77561509 Score: 124
Period size: 28 Copynumber: 2.4 Consensus size: 29
77561430 GTCTAAAGGT
77561440 AAAATGGTCATTTGTGAAAGTCT-GGGGC
1 AAAATGGTCATTTGTGAAAGTCTAGGGGC
*
77561468 AAACTGGTCATTTGTGAAAGTCTAGGGGC
1 AAAATGGTCATTTGTGAAAGTCTAGGGGC
77561497 AAAATGGTCATTT
1 AAAATGGTCATTT
77561510 TACCAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 22 0.56
29 17 0.44
ACGTcount: A:0.30, C:0.11, G:0.29, T:0.30
Consensus pattern (29 bp):
AAAATGGTCATTTGTGAAAGTCTAGGGGC
Found at i:77563274 original size:55 final size:53
Alignment explanation
Indices: 77563175--77563351 Score: 194
Period size: 55 Copynumber: 3.3 Consensus size: 53
77563165 CATGTCTAGA
* * * * *
77563175 CATGGTCTTACGTGGTATCCTTGCTTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGGGA-CCTTTCCTTATAGAACTCATCAATGCCATGCCTTGG
* ** *
77563228 CATGGTCTTCCATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTTTTGT
1 CATGGTCTTACATGGGACC-TTTCCTTATAG-AACTCATCAATGCCATGCCTTGG
*** *
77563283 CATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATG-GGACCTTTCCTTATAGAACTCATCAATGCCATGCCTTGG
77563337 CATGGTCTTACATGG
1 CATGGTCTTACATGG
77563352 TATCCTTGTC
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 21 0.21
54 34 0.33
55 43 0.42
56 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
CATGGTCTTACATGGGACCTTTCCTTATAGAACTCATCAATGCCATGCCTTGG
Done.