Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 236 of 310
Found at i:77838874 original size:27 final size:27
Alignment explanation
Indices: 77838802--77838876 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
77838792 GGCTGTCACA
*
77838802 CTACAGGGGTATTGTGA-TAATTCTACC
1 CTACAGGGGTATT-TCAGTAATTCTACC
* *
77838829 CTA-TGGGGTATTTCGGTAATTCTACC
1 CTACAGGGGTATTTCAGTAATTCTACC
*
77838855 CTACAAGGGTATTTCAGTAATT
1 CTACAGGGGTATTTCAGTAATT
77838877 TCACAAATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.03
26 21 0.52
27 18 0.45
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36
Consensus pattern (27 bp):
CTACAGGGGTATTTCAGTAATTCTACC
Found at i:77838891 original size:27 final size:26
Alignment explanation
Indices: 77838861--77838963 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 26
77838851 TACCCTACAA
77838861 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTCAGTAATTTCACAAA-TAG
** *
77838888 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTCACAAA-TAG
** **
77838915 GGGTATTTTGGTAA-TTCTATCCGATAG
1 GGGTATTTCAGTAATTTC-A-CAAATAG
77838942 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTCACAA
77838964 TCGAGGGTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 3 0.05
27 54 0.87
28 5 0.08
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTCACAAATAG
Found at i:77838996 original size:27 final size:27
Alignment explanation
Indices: 77838962--77839185 Score: 252
Period size: 27 Copynumber: 8.3 Consensus size: 27
77838952 GTAATTTCAC
* * *
77838962 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
77838989 AATTGAGGGTAAAATGGTAATTTT-TA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * *
77839015 AATCGAAGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
77839042 AATCGAGGGTAAAATGGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * * *
77839069 AGTCGAGGATGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
77839096 AATCGAGGGTAAAATGGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * * *
77839123 AGTCGAGGATGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
77839150 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
77839177 AATCGAGGG
1 AATCGAGGG
77839186 CATTTTAGTA
Statistics
Matches: 162, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 22 0.14
27 140 0.86
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:77839094 original size:54 final size:54
Alignment explanation
Indices: 77838964--77839171 Score: 303
Period size: 54 Copynumber: 3.9 Consensus size: 54
77838954 AATTTCACAA
* * * * *
77838964 TCGAGGGTAAAACGATAATTTTGTAAATTGAGGGTAAAATGGTAA-TTTTTAAA
1 TCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTTTAAG
*
77839017 TCGAAGG-TAAAATGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTTTAAG
1 TCG-AGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTTTAAG
* *
77839071 TCGAGGATGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTTTAAG
1 TCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTTTAAG
* *
77839125 TCGAGGATGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
1 TCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATT
77839172 CTACAAATCG
Statistics
Matches: 144, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
53 40 0.28
54 104 0.72
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (54 bp):
TCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTTTAAG
Found at i:77839226 original size:26 final size:25
Alignment explanation
Indices: 77839150--77839278 Score: 78
Period size: 26 Copynumber: 4.9 Consensus size: 25
77839140 TAATTCTATA
** *
77839150 AATCGAGGGTAAAATGGTAATTCTAC
1 AATCGAGGGT-ATTTGGTAATTTTAC
* * *
77839176 AAATCGAGGGCATTTTAGTACTTTTAC
1 -AATCGAGGGTA-TTTGGTAATTTTAC
* *
77839203 AATCGACGGTATTTCGGTAATTTTATA
1 AATCGAGGGTATTT-GGTAATTTTA-C
* *
77839230 AACCGGGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTA-TTTGGTAATTTTAC
* * *
77839256 AATTGGGGGTATTTTAGTAATTT
1 AATCGAGGGTA-TTTGGTAATTT
77839279 GGTAATTTTA
Statistics
Matches: 79, Mismatches: 19, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
25 3 0.04
26 37 0.47
27 36 0.46
28 3 0.04
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.37
Consensus pattern (25 bp):
AATCGAGGGTATTTGGTAATTTTAC
Found at i:77842871 original size:33 final size:32
Alignment explanation
Indices: 77842822--77842885 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
77842812 CTCGCTGCAA
* *
77842822 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
77842855 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
77842886 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:77848040 original size:40 final size:40
Alignment explanation
Indices: 77847983--77848160 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
77847973 CGGATGATAA
*
77847983 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
* *
77848023 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
77848063 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
77848103 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
*
77848143 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77848161 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 110 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:77853541 original size:27 final size:26
Alignment explanation
Indices: 77853501--77853559 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
77853491 TATATGTATG
*
77853501 TATCTGTTCTGGTGGCCTAGCCACAA
1 TATCTGTTCTGGTGACCTAGCCACAA
* * *
77853527 TATCTGTATCTGGTGACTTCGTCACAA
1 TATCTGT-TCTGGTGACCTAGCCACAA
77853554 TATCTG
1 TATCTG
77853560 GTAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
TATCTGTTCTGGTGACCTAGCCACAA
Found at i:77863689 original size:18 final size:19
Alignment explanation
Indices: 77863655--77863690 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
77863645 TCCTAACGCA
77863655 AATTAAATTAAACCATATT
1 AATTAAATTAAACCATATT
*
77863674 AATTAAA-TAAATCATAT
1 AATTAAATTAAACCATAT
77863691 CAACATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
AATTAAATTAAACCATATT
Found at i:77864519 original size:22 final size:22
Alignment explanation
Indices: 77864492--77864535 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
77864482 AAAAATGATA
*
77864492 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
* *
77864514 AAAATTATTTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
77864536 GTTAGTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:77869175 original size:41 final size:40
Alignment explanation
Indices: 77869132--77869271 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
77869122 TAGCAGCTTT
* *
77869132 TATGAGAAAAATGCCGCAAAAGGTCAAGCATTAGCGGCGTT
1 TATGAGAAAAATGCCACAAAAGGTCAAGCATTAGCGGCG-C
77869173 TATGAGAAAAATGCCACAAAAGG-CAAGCATTAGCGGCGC
1 TATGAGAAAAATGCCACAAAAGGTCAAGCATTAGCGGCGC
* * * * * *
77869212 TATGAGAAAAACGCTACCAAATGTCAAGCATTAGTGTCGC
1 TATGAGAAAAATGCCACAAAAGGTCAAGCATTAGCGGCGC
*
77869252 TGTGAGAAAAATGCCACAAA
1 TATGAGAAAAATGCCACAAA
77869272 GTATCATTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 19 0.22
40 45 0.52
41 22 0.26
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.18
Consensus pattern (40 bp):
TATGAGAAAAATGCCACAAAAGGTCAAGCATTAGCGGCGC
Found at i:77869432 original size:27 final size:27
Alignment explanation
Indices: 77869397--77869457 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
77869387 CGACCATCTA
* *
77869397 CTGCATCGTTGTC-AGCTGTCCCCTCTG
1 CTGCATCGTCGTCGA-CTATCCCCTCTG
*
77869424 CTGCATCGTCGTCGACTATCCCTTCTG
1 CTGCATCGTCGTCGACTATCCCCTCTG
77869451 CTGCATC
1 CTGCATC
77869458 ACCGTCAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.10, C:0.38, G:0.20, T:0.33
Consensus pattern (27 bp):
CTGCATCGTCGTCGACTATCCCCTCTG
Found at i:77869693 original size:25 final size:25
Alignment explanation
Indices: 77869664--77869711 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
77869654 CCTTAGCTTA
77869664 ATTTTTATTATTTCATTTAACAATT
1 ATTTTTATTATTTCATTTAACAATT
77869689 ATTTTTATTATTTCATTTAACAA
1 ATTTTTATTATTTCATTTAACAA
77869712 AATCCTATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTTATTATTTCATTTAACAATT
Found at i:77872010 original size:28 final size:28
Alignment explanation
Indices: 77871977--77872043 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
77871967 CGATATTTCA
77871977 CACACTAAGTGTCATTCTCAACATCTCG
1 CACACTAAGTGTCATTCTCAACATCTCG
* *
77872005 CACACTAAGTGTCATTCTCAATATTTCG
1 CACACTAAGTGTCATTCTCAACATCTCG
* *
77872033 TACACTGAGTG
1 CACACTAAGTG
77872044 CCATATTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (28 bp):
CACACTAAGTGTCATTCTCAACATCTCG
Found at i:77873906 original size:46 final size:46
Alignment explanation
Indices: 77873853--77874020 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
77873843 TATTTGGGCA
77873853 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
77873899 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
77873946 TCCGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
77873992 CCCCAGCTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
77874021 GGGCGAGTTA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 57 0.57
47 31 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:77874008 original size:93 final size:93
Alignment explanation
Indices: 77873849--77874021 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
77873839 GGGATATTTG
* * * *
77873849 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
77873914 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
77873942 GGCATCCGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCCAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
*
77874007 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
77874022 GGCGAGTTAC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:77876068 original size:30 final size:30
Alignment explanation
Indices: 77876027--77876139 Score: 160
Period size: 31 Copynumber: 3.8 Consensus size: 30
77876017 TGAGTCTTGA
*
77876027 CATAT-ACTGGGCCAAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTT-CATAAAT
*
77876057 CATAT-ATTGGGCCG-AGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCC-TTTCATAAAT
77876086 CATATCACTGGGCCGAAGCCATTTCATAAAT
1 CATATCACTGGGCCGAAGCC-TTTCATAAAT
77876117 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
77876140 ACTGTAAACA
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
29 16 0.21
30 26 0.34
31 34 0.45
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (30 bp):
CATATCACTGGGCCGAAGCCTTTCATAAAT
Found at i:77876210 original size:42 final size:42
Alignment explanation
Indices: 77876163--77876254 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
77876153 TGGCCCTTAG
*
77876163 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
77876205 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
77876247 GCCCATTT
1 GCCCATTT
77876255 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:77876437 original size:25 final size:25
Alignment explanation
Indices: 77876402--77876471 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
77876392 CTCTTTTAAT
*
77876402 AACTGGTGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
77876427 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
77876452 AACTAGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
77876472 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:77878088 original size:27 final size:27
Alignment explanation
Indices: 77878058--77878235 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
77878048 ATATTGAGCC
* *
77878058 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** *
77878085 CGCACACTTAGTGCTATGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
77878112 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * *
77878140 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
77878167 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
77878194 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
77878221 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77878236 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:77878197 original size:82 final size:81
Alignment explanation
Indices: 77878078--77878234 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
77878068 GTGCTATATA
* *
77878078 ATCAACTCGCACACTTAGTGCTATGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ATCAACTCGCACACTTAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
77878143 ACACTTAGTGCCGCATG
65 ACACTTAGTGCCGCATG
* * ** *
77878160 ATCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGC
1 ATCAACTCGCACACTTAGTGCTAT-ATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGC
77878224 ACACTTAGTGC
65 ACACTTAGTGC
77878235 TGTACAATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.25
82 50 0.75
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATG
Found at i:77880545 original size:27 final size:27
Alignment explanation
Indices: 77880515--77880579 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
77880505 GGGCATATTC
77880515 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
77880542 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
77880569 GTCTTTTTACC
1 GTCATTTTACC
77880580 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:77880581 original size:26 final size:28
Alignment explanation
Indices: 77880537--77880588 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
77880527 TACAAGGGTA
77880537 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
77880564 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
77880589 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:77880663 original size:27 final size:26
Alignment explanation
Indices: 77880633--77880688 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
77880623 GTAAATCTAC
77880633 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTT-T
*
77880660 AAACCAATGGTATTTCTATAATTTTT
1 AAACCAAGGGTATTTCTATAATTTTT
77880686 AAA
1 AAA
77880689 AAGTCAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
AAACCAAGGGTATTTCTATAATTTTT
Found at i:77880736 original size:27 final size:27
Alignment explanation
Indices: 77880697--77880811 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
77880687 AAAAGTCAAT
* **
77880697 GGTATTTTTGTAATTTTGTAAATTAGG
1 GGTATTTTGGTAATTTTACAAATTAGG
77880724 GGTATTTTGGTAATTTTACAAATT-GAG
1 GGTATTTTGGTAATTTTACAAATTAG-G
* * ** *
77880751 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAATTAGG
*
77880778 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAATTAGG
*
77880805 GTTATTT
1 GGTATTT
77880812 CAGTCATTTC
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 71 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATTAGG
Found at i:77880924 original size:81 final size:81
Alignment explanation
Indices: 77880824--77881173 Score: 468
Period size: 81 Copynumber: 4.3 Consensus size: 81
77880814 GTCATTTCAT
* * * *
77880824 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
* *
77880889 AAACAGTAATTTTGTA
66 AAACGGTAATTCTGTA
** * *
77880905 AATCGAGGGTAAATTGGTAATTTTGTAAATCGAGGGTGAAATGATAATTCTATAAATCTG-GGGT
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGT
*
77880969 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTGTA
* * * *
77880986 AATCAAGGGTAAAACGGTAATTTTATAAATCGAAGATAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
* *
77881051 AAATGGTAATTCTGCA
66 AAACGGTAATTCTGTA
* * *
77881067 AATAGAGGGTAAAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGG
1 AATCGAGGGT--AAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
77881132 TAAAACGGTAATTCTGTA
64 TAAAACGGTAATTCTGTA
* *
77881150 AATCGATGGTAAAACAGTAATTTT
1 AATCGAGGGTAAAACGGTAATTTT
77881174 ACAAATTGAG
Statistics
Matches: 230, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.00
81 156 0.68
82 1 0.00
83 72 0.31
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:77881179 original size:27 final size:27
Alignment explanation
Indices: 77880824--77881171 Score: 392
Period size: 27 Copynumber: 12.8 Consensus size: 27
77880814 GTCATTTCAT
*
77880824 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
77880851 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
77880878 AATTGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
77880905 AATCGAGGGTAAATTGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
77880932 AATCGAGGGTGAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
77880959 AATCTG-GGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
77880986 AATCAAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
77881013 AATCGAAGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
77881040 AATCGAGGGTAAAATGGTAATTCTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
77881067 AATAGAGGGTAAAAAACGGTAATTCTGTA
1 AATCGAGGGT--AAAACGGTAATTCTGTA
* *
77881096 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
77881123 AATCGAAGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
77881150 AATCGATGGTAAAACAGTAATT
1 AATCGAGGGTAAAACGGTAATT
77881172 TTACAAATTG
Statistics
Matches: 279, Mismatches: 38, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
27 254 0.91
28 1 0.00
29 24 0.09
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:77883602 original size:27 final size:27
Alignment explanation
Indices: 77883571--77883748 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77883561 TAAATTGTAC
77883571 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77883598 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77883624 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77883652 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77883680 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77883707 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77883734 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77883749 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77883685 original size:82 final size:81
Alignment explanation
Indices: 77883572--77883727 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77883562 AAATTGTACA
* *
77883572 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77883636 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77883653 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77883718 TGCGAGTTGA
65 TGCGAATTGA
77883728 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77883739 original size:82 final size:81
Alignment explanation
Indices: 77883568--77883748 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77883558 GATTAAATTG
* *
77883568 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77883633 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77883649 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77883713 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77883731 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77883749 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77904247 original size:29 final size:30
Alignment explanation
Indices: 77904176--77904284 Score: 75
Period size: 29 Copynumber: 3.8 Consensus size: 30
77904166 ACCCCTACAT
* * *
77904176 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATAGCCCATTTAGGCCCAATTC
** * * *
77904204 TTATTCAAATGGCCCATTTA-GCCCAGTTC
1 ACATTCATATAGCCCATTTAGGCCCAATTC
* * *
77904233 ATATTCCTATAGCCCA-CTAGGCCCAATTC
1 ACATTCATATAGCCCATTTAGGCCCAATTC
*
77904262 ACATTCATATGGCCCA-TTAGGCC
1 ACATTCATATAGCCCATTTAGGCC
77904285 TAAATCATAT
Statistics
Matches: 62, Mismatches: 16, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 19 0.31
29 43 0.69
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (30 bp):
ACATTCATATAGCCCATTTAGGCCCAATTC
Found at i:77904293 original size:58 final size:57
Alignment explanation
Indices: 77904187--77904295 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 57
77904177 CATGCATATG
** **
77904187 GCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTAGCCCAGTTCATATTCCTATA
1 GCCCACTAGGCCCAATCACATTCAAATGGCCCATTTAGCCCAAATCATATTCCTATA
* *
77904244 GCCCACTAGGCCCAATTCACATTCATATGGCCCA-TTAGGCCTAAATCATATT
1 GCCCACTAGGCCCAA-TCACATTCAAATGGCCCATTTA-GCCCAAATCATATT
77904296 ATATTCATGC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 18 0.41
58 26 0.59
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCACATTCAAATGGCCCATTTAGCCCAAATCATATTCCTATA
Found at i:77904401 original size:19 final size:19
Alignment explanation
Indices: 77904368--77904414 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
77904358 TAGGCCCAAC
*
77904368 AGCCCA-TCAGGCCCATTT
1 AGCCCATTCTGGCCCATTT
77904386 AGCCCATTCTGGCCCATTT
1 AGCCCATTCTGGCCCATTT
* *
77904405 GGCCAATTCT
1 AGCCCATTCT
77904415 CAACCCAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (19 bp):
AGCCCATTCTGGCCCATTT
Found at i:77907342 original size:18 final size:18
Alignment explanation
Indices: 77907316--77907351 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
77907306 TAAATCGTAA
*
77907316 TTTCACTACAGTTTTCAG
1 TTTCACTACAATTTTCAG
*
77907334 TTTCTCTACAATTTTCAG
1 TTTCACTACAATTTTCAG
77907352 AATACACTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.47
Consensus pattern (18 bp):
TTTCACTACAATTTTCAG
Found at i:77911313 original size:72 final size:72
Alignment explanation
Indices: 77911133--77911339 Score: 211
Period size: 71 Copynumber: 2.9 Consensus size: 72
77911123 AGTAAATTCG
* * *
77911133 TTTATTTAATTATGTGTTTTTAAAAAGTTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
* * *
77911198 GAAACCG
66 AAAAACA
* * ** * ** *
77911205 TTTATTTAGTTAT-ACATTTTCAAAAGCTTAATTTAGTTTGATTTATTGAAATTTT-ATCTTAAG
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATT-AAATTTTGATATTAAG
*
77911268 TAAAAACA
65 CAAAAACA
* * * * *
77911276 TTTGTTCAATTATGAGTTTTTAAAAAGGTTAATTTAGTTCAACTTATTGAGTTTTGATATTAAG
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAATTTTGATATTAAG
77911340 TGGAACCATT
Statistics
Matches: 106, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
71 53 0.50
72 53 0.50
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (72 bp):
TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
AAAAACA
Found at i:77911350 original size:72 final size:72
Alignment explanation
Indices: 77911133--77911354 Score: 232
Period size: 72 Copynumber: 3.1 Consensus size: 72
77911123 AGTAAATTCG
* * * * *
77911133 TTTATTTAATTATGTGTTTTTAAAAAGTTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT
*
77911198 GAAACCG
66 GAAACCA
* * ** * ** *
77911205 TTTATTTAGTTAT-ACATTTTCAAAAGCTTAATTTAGTTTGATTTATTGAAATTTT-ATCTTAAG
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTG-AATTTTGATATTAAG
* *
77911268 TAAAAACA
65 TGAAACCA
* * * *
77911276 TTTGTTCAATTATGAGTTTTTAAAAAGGTTAATTTAGTTCAACTTATTGAGTTTTGATATTAAGT
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT
*
77911341 GGAACCA
66 GAAACCA
77911348 TTTATTC
1 TTTATTC
77911355 TGTTATACAA
Statistics
Matches: 117, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
71 53 0.45
72 64 0.55
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.48
Consensus pattern (72 bp):
TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT
GAAACCA
Found at i:77912259 original size:14 final size:14
Alignment explanation
Indices: 77912244--77912277 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
77912234 AAGAGTATAA
77912244 TTAAAGGGTTAAAAT
1 TTAAA-GGTTAAAAT
77912259 TTAAA-GTTAAAAT
1 TTAAAGGTTAAAAT
77912272 TTAAAG
1 TTAAAG
77912278 ATGATAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.72
15 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAAAGGTTAAAAT
Found at i:77912267 original size:13 final size:13
Alignment explanation
Indices: 77912251--77912277 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77912241 TAATTAAAGG
77912251 GTTAAAATTTAAA
1 GTTAAAATTTAAA
77912264 GTTAAAATTTAAA
1 GTTAAAATTTAAA
77912277 G
1 G
77912278 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:77912344 original size:9 final size:9
Alignment explanation
Indices: 77912328--77912457 Score: 97
Period size: 9 Copynumber: 14.7 Consensus size: 9
77912318 AAAACTTTGG
77912328 ACATAACTT
1 ACATAACTT
*
77912337 AAATAACTT
1 ACATAACTT
77912346 ACATAACTT
1 ACATAACTT
77912355 ACATAA--T
1 ACATAACTT
*
77912362 ACATAA-AT
1 ACATAACTT
* * *
77912370 ATATATCAT
1 ACATAACTT
*
77912379 ATCATAAATT
1 A-CATAACTT
77912389 ACATAACTT
1 ACATAACTT
77912398 ACATAACTT
1 ACATAACTT
*
77912407 ACATTACTT
1 ACATAACTT
*
77912416 ACATAA-AT
1 ACATAACTT
* * *
77912424 ATATATCAT
1 ACATAACTT
77912433 ATCATAACTT
1 A-CATAACTT
*
77912443 ACAGAACTT
1 ACATAACTT
*
77912452 AAATAA
1 ACATAA
77912458 ACTTTGGATC
Statistics
Matches: 96, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
7 7 0.07
8 10 0.10
9 68 0.71
10 11 0.11
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.34
Consensus pattern (9 bp):
ACATAACTT
Found at i:77912445 original size:54 final size:52
Alignment explanation
Indices: 77912329--77912457 Score: 195
Period size: 54 Copynumber: 2.4 Consensus size: 52
77912319 AAACTTTGGA
*
77912329 CATAACTTAAATAACTTACATAACTTACATAATACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCATAT
* *
77912381 CATAAATTACATAACTTACATAACTTACATTACTTACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTTACA-TA-ATACATAAATATATATCATAT
* *
77912435 CATAACTTACAGAACTTAAATAA
1 CATAACTTACATAACTTACATAA
77912458 ACTTTGGATC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
52 27 0.39
53 2 0.03
54 40 0.58
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.34
Consensus pattern (52 bp):
CATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCATAT
Found at i:77917504 original size:81 final size:81
Alignment explanation
Indices: 77917418--77917617 Score: 283
Period size: 81 Copynumber: 2.5 Consensus size: 81
77917408 ATTACTGAAA
* * * **
77917418 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATTGTTTCACCCTCAATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATT
*
77917483 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
* *
77917499 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATT
77917564 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * * *
77917580 TACCCCCACTTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATT
77917618 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATT
TACAAAATTACCATTT
Found at i:77917580 original size:27 final size:27
Alignment explanation
Indices: 77917418--77917617 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
77917408 ATTACTGAAA
** *
77917418 TACCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
77917445 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
77917472 CACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
77917499 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
77917526 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
77917553 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
77917580 TACCC-CCACTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
77917607 TACCCTCGATT
1 TACCCTCGATT
77917618 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 145 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:77917651 original size:27 final size:27
Alignment explanation
Indices: 77917616--77917798 Score: 196
Period size: 27 Copynumber: 6.8 Consensus size: 27
77917606 TTACCCTCGA
*
77917616 TTGTGAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGT
77917643 TTGTAAAATTA-TCAAAATA-CCCTAGT
1 TTGTAAAATTACT-AAAATACCCCTAGT
*
77917669 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGT
* *
77917696 TTGTAAAATTACTAAAATACCACTGGT
1 TTGTAAAATTACTAAAATACCCCTAGT
* ** *
77917723 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACTAAAATACCCCT-AGT
*
77917750 TTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACTAAAATACCCCTAG-T
**
77917777 TTACAAAATTA-TAGAAATACCC
1 TTGTAAAATTACTA-AAATACCC
77917799 TTGACTTTCT
Statistics
Matches: 132, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 29 0.22
27 99 0.75
28 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTAAAATACCCCTAGT
Found at i:77917651 original size:53 final size:53
Alignment explanation
Indices: 77917607--77917771 Score: 206
Period size: 53 Copynumber: 3.1 Consensus size: 53
77917597 ATTACCGTTT
* * * *
77917607 TACCCTCGATTGTGAAATTACTAAAATACCCCTAGTTTGTAAAATTATCAAAA
1 TACCCTAGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* *
77917660 TACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 TACCCTAGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * * * *
77917713 TACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTAGATTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAA
77917767 TACCC
1 TACCC
77917772 CTGATTTACA
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
53 56 0.57
54 43 0.43
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (53 bp):
TACCCTAGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
Found at i:77917849 original size:27 final size:27
Alignment explanation
Indices: 77917764--77917861 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
77917754 AAAATTACCA
* *
77917764 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGGTTTACAAAATTATAG
*
77917791 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTG-GTTTAC--AAAATTATAG
*
77917820 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGGTTTACAAAATTA-TAG
77917847 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
77917862 GTAGATTTAC
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
27 33 0.54
28 7 0.11
29 21 0.34
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTATAG
Found at i:77919659 original size:68 final size:64
Alignment explanation
Indices: 77919540--77919801 Score: 230
Period size: 68 Copynumber: 4.0 Consensus size: 64
77919530 GATTGGATGA
** * * *
77919540 TACA-GATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGT-GTACAAGAGAG
1 TACAGGATA-TATGTAGCTAGGTCACATGGGTGGTACTATGTGCACACCATGTAG-ACAAGAGAG
77919603 C
64 C
* *
77919604 TACAAGGCATTATGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAG
1 TAC-AGG-A-TAT-ATGTAGCTAGGTCACATGGGTGGTACTATGTGCACACCATGTAGACAAGAG
77919669 AGC
62 AGC
* * * * *
77919672 TACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGCACACCATGTAGACAAGAGA
1 TACAGGATATATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGCACACCATGTAGACAAGAGA
77919737 GC
63 GC
* * **
77919739 TAC-GAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGA
1 TACAG-GATATATGTAGCTAGGTCACATGGGTGGTACT-ATGTGCACACCATGTAG-ACAAGAGA
77919800 GC
63 GC
77919802 CAAACTATAT
Statistics
Matches: 163, Mismatches: 23, Indels: 25
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 27 0.17
65 4 0.02
66 24 0.15
67 37 0.23
68 50 0.31
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
TACAGGATATATGTAGCTAGGTCACATGGGTGGTACTATGTGCACACCATGTAGACAAGAGAGC
Found at i:77922610 original size:42 final size:42
Alignment explanation
Indices: 77922551--77922643 Score: 177
Period size: 42 Copynumber: 2.2 Consensus size: 42
77922541 TAGTCTCCCC
*
77922551 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
77922593 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
77922635 AAATGGGCT
1 AAATGGGCT
77922644 AAGGGCCATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:77922700 original size:31 final size:31
Alignment explanation
Indices: 77922665--77922779 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
77922655 CATTTACAGT
77922665 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
77922696 AAAGGCTTCGGCCTAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
77922727 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
77922758 AAAGGGTTCGGCCCTGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
77922780 TCAAGATGAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:77925519 original size:24 final size:24
Alignment explanation
Indices: 77925473--77925537 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
77925463 ATGAGAGGTT
* *** *
77925473 GGAGTGATTTATGGAGTGTATCAT
1 GGAGAGATTTATGGAGAAAATCAA
77925497 GGAGAGATATTA-GGAGAAAATCAA
1 GGAGAGAT-TTATGGAGAAAATCAA
*
77925521 GGAGTGATTTATGGAGA
1 GGAGAGATTTATGGAGA
77925538 GATTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.35, C:0.03, G:0.34, T:0.28
Consensus pattern (24 bp):
GGAGAGATTTATGGAGAAAATCAA
Found at i:77925525 original size:36 final size:37
Alignment explanation
Indices: 77925485--77925554 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
77925475 AGTGATTTAT
77925485 GGAGTG-TATCATGGAGAGATATT-AGGA-GAAAATCAA
1 GGAGTGAT-TCATGGAGAGAT-TTAAGGAGGAAAATCAA
*
77925521 GGAGTGATTTATGGAGAGATTTAAGGAGGAAAAT
1 GGAGTGATTCATGGAGAGATTTAAGGAGGAAAAT
77925555 ATAGGATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
35 2 0.07
36 21 0.70
37 7 0.23
ACGTcount: A:0.40, C:0.03, G:0.33, T:0.24
Consensus pattern (37 bp):
GGAGTGATTCATGGAGAGATTTAAGGAGGAAAATCAA
Found at i:77931738 original size:60 final size:59
Alignment explanation
Indices: 77931658--77931798 Score: 171
Period size: 60 Copynumber: 2.4 Consensus size: 59
77931648 TTTAGTGTTA
*
77931658 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCT-TAC-AGTAAC-AGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAG-CCCTATACAAGT--CGAGA-TAT
* *
77931719 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATACAAGTCGAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
* *
77931778 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
77931799 CACAGTTGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
59 26 0.37
60 34 0.48
61 11 0.15
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
Found at i:77934879 original size:27 final size:26
Alignment explanation
Indices: 77934846--77934914 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 26
77934836 GCCAAACTAT
*
77934846 TTAAATTACCGAAATACCCCTAATTTG
1 TTAAATTACCGAAATACCCC-AACTTG
* *
77934873 TTAAATTACCAAAATACCCCCACTTG
1 TTAAATTACCGAAATACCCCAACTTG
*
77934899 TAAAATTACCGAAATA
1 TTAAATTACCGAAATA
77934915 ACCTTGTAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 18 0.49
27 19 0.51
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (26 bp):
TTAAATTACCGAAATACCCCAACTTG
Found at i:77934906 original size:26 final size:27
Alignment explanation
Indices: 77934848--77934914 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
77934838 CAAACTATTT
* *
77934848 AAATTACCGAAATACCCCTAATTTGTT
1 AAATTACCGAAATACCCCTAACTTGTA
* *
77934875 AAATTACCAAAATACCCC-CACTTGTA
1 AAATTACCGAAATACCCCTAACTTGTA
77934901 AAATTACCGAAATA
1 AAATTACCGAAATA
77934915 ACCTTGTAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 18 0.51
27 17 0.49
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTAACTTGTA
Found at i:77934946 original size:27 final size:27
Alignment explanation
Indices: 77934897--77934958 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
77934887 TACCCCCACT
* *
77934897 TGTAAAATTACCGAAATAACCTTGTAG
1 TGTAAAATTACCGAAAGAACCTTATAG
* *
77934924 TGTAAAATTACCGAACGACCCTTATAG
1 TGTAAAATTACCGAAAGAACCTTATAG
*
77934951 GGTAAAAT
1 TGTAAAAT
77934959 GACTATTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
TGTAAAATTACCGAAAGAACCTTATAG
Found at i:77936895 original size:27 final size:26
Alignment explanation
Indices: 77936853--77936925 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
77936843 GGCCAAACTG
* *
77936853 TTTAAATTATCGAAATACCCCTAATT
1 TTTAAATTACCGAAATACCCCCAATT
* *
77936879 TGTTAAATTACCAAAATACCCCCACTT
1 T-TTAAATTACCGAAATACCCCCAATT
*
77936906 TTAAAATTACCGAAATACCC
1 TTTAAATTACCGAAATACCC
77936926 TTGTAGTGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.32
Consensus pattern (26 bp):
TTTAAATTACCGAAATACCCCCAATT
Found at i:77936942 original size:27 final size:27
Alignment explanation
Indices: 77936907--77936966 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
77936897 CCCCCACTTT
*
77936907 TAAAATTACCGAAA-TACCCTTGTAGTG-
1 TAAAATTACC-AAACTACCCCTGTAG-GA
77936934 TAAAATTACCAAACTACCCCTGTAGGA
1 TAAAATTACCAAACTACCCCTGTAGGA
77936961 TAAAAT
1 TAAAAT
77936967 GACTGTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.27
Consensus pattern (27 bp):
TAAAATTACCAAACTACCCCTGTAGGA
Found at i:77937457 original size:27 final size:27
Alignment explanation
Indices: 77937407--77937468 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
77937397 CTATGTGCCT
* *
77937407 ATCATATTTATCGATGACTCTGTGTCG
1 ATCATATTTACCCATGACTCTGTGTCG
* * *
77937434 ATCATATTTACCCATGTCTGTGTGTTG
1 ATCATATTTACCCATGACTCTGTGTCG
*
77937461 ATTATATT
1 ATCATATT
77937469 ACCATCGCTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (27 bp):
ATCATATTTACCCATGACTCTGTGTCG
Found at i:77939643 original size:25 final size:25
Alignment explanation
Indices: 77939614--77939665 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
77939604 TACCAACTGC
77939614 CTGCTGAAATTTCTTTTTCTTTCTT
1 CTGCTGAAATTTCTTTTTCTTTCTT
*
77939639 CTGCTGAACTTTCTTTTTCTTTCTT
1 CTGCTGAAATTTCTTTTTCTTTCTT
77939664 CT
1 CT
77939666 CACAGCTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.10, C:0.23, G:0.08, T:0.60
Consensus pattern (25 bp):
CTGCTGAAATTTCTTTTTCTTTCTT
Found at i:77940737 original size:27 final size:27
Alignment explanation
Indices: 77940707--77940779 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
77940697 AAAATTGTTT
* *
77940707 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCAAAATACCCTTAACTTGTA
**
77940734 AAATTA-CAGAAATAGCCC-GCACTTGTA
1 AAATTACCA-AAATA-CCCTTAACTTGTA
*
77940761 AAATTACCGAAATACCCTT
1 AAATTACCAAAATACCCTT
77940780 GTAGTGTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
26 5 0.14
27 27 0.75
28 4 0.11
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAACTTGTA
Found at i:77940787 original size:27 final size:27
Alignment explanation
Indices: 77940757--77940810 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
77940747 AGCCCGCACT
*
77940757 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
*
77940784 TGTAAAATTACCGAACTACCCCTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
77940811 GGCAAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCCTGTAG
Found at i:77940817 original size:27 final size:27
Alignment explanation
Indices: 77940760--77940818 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
77940750 CCGCACTTGT
* * *
77940760 AAAATTACCGAAATACCCTTGTAGTGT
1 AAAATTACCGAAATACCCCTGTAGGGC
*
77940787 AAAATTACCGAACTACCCCTGTAGGGC
1 AAAATTACCGAAATACCCCTGTAGGGC
77940814 AAAAT
1 AAAAT
77940819 GATTATTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGC
Found at i:77942201 original size:46 final size:46
Alignment explanation
Indices: 77942133--77942356 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
77942123 TGTAACCCGC
* * *
77942133 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* * * * *
77942179 CCATAAGTGAACTCGAAATCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * *
77942225 ACATTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
77942272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
77942318 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
77942357 CCCAAATATC
Statistics
Matches: 153, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.01
46 115 0.75
47 34 0.22
48 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:77942248 original size:93 final size:93
Alignment explanation
Indices: 77942141--77942310 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
77942131 GCCCATAAGC
**
77942141 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
77942206 CGAGTTCGGATGCCTAGTTACATTTCAT
66 CGAGTTCGGATGCCTAGTTACATTTCAT
* * *
77942234 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
*
77942299 CGAGTTTGGATG
66 CGAGTTCGGATG
77942311 TTCGCATCCA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAT
Found at i:77945531 original size:27 final size:27
Alignment explanation
Indices: 77945497--77945555 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
77945487 CCCGTACTTG
*
77945497 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
77945524 AAAATTACCGAACTACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
77945551 AAAAT
1 AAAAT
77945556 GATTGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:77946093 original size:39 final size:39
Alignment explanation
Indices: 77946039--77946117 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
77946029 TTTACCCATG
77946039 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
1 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
77946078 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
1 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
77946117 G
1 G
77946118 TCGAACTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
Found at i:77966937 original size:40 final size:40
Alignment explanation
Indices: 77966882--77967064 Score: 312
Period size: 40 Copynumber: 4.6 Consensus size: 40
77966872 ATTTGAATAC
77966882 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
77966922 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
77966962 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
77967002 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
77967042 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
77967065 ATTGAGCTTG
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:77970471 original size:12 final size:10
Alignment explanation
Indices: 77970435--77970463 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
77970425 TAATTTCGTA
77970435 TTTTTTGA-T
1 TTTTTTGACT
77970444 TTTTTTGACT
1 TTTTTTGACT
77970454 TTTTTTGACT
1 TTTTTTGACT
77970464 GATTTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.72
Consensus pattern (10 bp):
TTTTTTGACT
Found at i:77971986 original size:47 final size:47
Alignment explanation
Indices: 77971912--77972008 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
77971902 TGAACTTATC
*
77971912 ACCATCCTGGTGTGGCGTTCATCCACCTTTTTATACCTTTGGTTCCT
1 ACCACCCTGGTGTGGCGTTCATCCACCTTTTTATACCTTTGGTTCCT
77971959 ACCACCCTGGTGTGGCGTTCATCCACCTTTTTATACCTTTGGTTCCT
1 ACCACCCTGGTGTGGCGTTCATCCACCTTTTTATACCTTTGGTTCCT
77972006 ACC
1 ACC
77972009 TCTCTATAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.13, C:0.32, G:0.16, T:0.38
Consensus pattern (47 bp):
ACCACCCTGGTGTGGCGTTCATCCACCTTTTTATACCTTTGGTTCCT
Found at i:77972518 original size:12 final size:12
Alignment explanation
Indices: 77972501--77972573 Score: 56
Period size: 12 Copynumber: 5.6 Consensus size: 12
77972491 TTGGAGTAAC
77972501 AAAAAAAATCAA
1 AAAAAAAATCAA
77972513 AAAAAAAATTCGAA
1 AAAAAAAA-TC-AA
* *
77972527 AAAAAATTGATTGAA
1 AAAAAA---AATCAA
*
77972542 AAAAAAAATTAA
1 AAAAAAAATCAA
*
77972554 AAAAAAAAGTGAA
1 AAAAAAAA-TCAA
77972567 AAAAAAA
1 AAAAAAA
77972574 TCGAGCAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
12 20 0.40
13 12 0.24
14 8 0.16
15 8 0.16
16 1 0.02
17 1 0.02
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAAATCAA
Found at i:77972519 original size:13 final size:13
Alignment explanation
Indices: 77972501--77972573 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
77972491 TTGGAGTAAC
77972501 AAAAAAAATCAAA
1 AAAAAAAATCAAA
*
77972514 AAAAAAATTCGAAA
1 AAAAAAAATC-AAA
** **
77972528 AAAAATTGATTGAA
1 AAAAA-AAATCAAA
*
77972542 AAAAAAAATTAAA
1 AAAAAAAATCAAA
* *
77972555 AAAAAAAGTGAAA
1 AAAAAAAATCAAA
77972568 AAAAAA
1 AAAAAA
77972574 TCGAGCAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
13 31 0.66
14 15 0.32
15 1 0.02
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.14
Consensus pattern (13 bp):
AAAAAAAATCAAA
Found at i:77972572 original size:29 final size:29
Alignment explanation
Indices: 77972511--77972573 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
77972501 AAAAAAAATC
** * ***
77972511 AAAAAAAAAATTCGAAAAAAAATTGATTG
1 AAAAAAAAAATTAAAAAAAAAAGTGAAAA
77972540 AAAAAAAAAATTAAAAAAAAAAGTGAAAA
1 AAAAAAAAAATTAAAAAAAAAAGTGAAAA
77972569 AAAAA
1 AAAAA
77972574 TCGAGCAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (29 bp):
AAAAAAAAAATTAAAAAAAAAAGTGAAAA
Found at i:77972583 original size:15 final size:15
Alignment explanation
Indices: 77972553--77972603 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
77972543 AAAAAAATTA
77972553 AAAAAAAAAGT--G-
1 AAAAAAAAAGTGAGC
77972565 AAAAAAAAA-TCGAGC
1 AAAAAAAAAGT-GAGC
77972580 AAAAAAAAAGGTGAGC
1 AAAAAAAAA-GTGAGC
77972596 AAAAAAAA
1 AAAAAAAA
77972604 TCAAGTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 1 0.03
12 9 0.27
14 1 0.03
15 9 0.27
16 12 0.36
17 1 0.03
ACGTcount: A:0.73, C:0.06, G:0.16, T:0.06
Consensus pattern (15 bp):
AAAAAAAAAGTGAGC
Found at i:77972585 original size:41 final size:41
Alignment explanation
Indices: 77972501--77972588 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
77972491 TTGGAGTAAC
* * ***
77972501 AAAAAAAATCAAAAAAAAAATTCGAAAAAAAATTGATTGAA
1 AAAAAAAATCAAAAAAAAAAGTCGAAAAAAAATCGAGCAAA
*
77972542 AAAAAAAATTAAAAAAAAAAGT-GAAAAAAAAATCGAGCAAA
1 AAAAAAAATCAAAAAAAAAAGTCG-AAAAAAAATCGAGCAAA
77972583 AAAAAA
1 AAAAAA
77972589 GGTGAGCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.75, C:0.05, G:0.08, T:0.12
Consensus pattern (41 bp):
AAAAAAAATCAAAAAAAAAAGTCGAAAAAAAATCGAGCAAA
Found at i:77972868 original size:11 final size:12
Alignment explanation
Indices: 77972836--77972866 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
77972826 TTGAGAGAAC
77972836 TTGAAAAAGCCT
1 TTGAAAAAGCCT
77972848 TTGAAAAAGCCT
1 TTGAAAAAGCCT
77972860 TTGAAAA
1 TTGAAAA
77972867 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:77975064 original size:30 final size:30
Alignment explanation
Indices: 77975028--77975124 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
77975018 AGCTCACTCC
77975028 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
77975058 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
77975088 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
77975118 TAGCTCA
1 TAGCTCA
77975125 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:77976960 original size:11 final size:12
Alignment explanation
Indices: 77976934--77976959 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77976924 AAAGGAGAAG
77976934 AAATTCAAAAAA
1 AAATTCAAAAAA
77976946 AAATTCAAAAAA
1 AAATTCAAAAAA
77976958 AA
1 AA
77976960 TCGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:77977968 original size:37 final size:37
Alignment explanation
Indices: 77977917--77977987 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
77977907 CATTCTTGTA
77977917 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
77977954 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
77977988 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:77977987 original size:6 final size:6
Alignment explanation
Indices: 77977927--77977976 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
77977917 AAGAGAAAAC
*
77977927 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
77977976 A
1 A
77977977 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:77978069 original size:11 final size:12
Alignment explanation
Indices: 77978037--77978067 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
77978027 TTGAGAGAAC
77978037 TTGAAAAAGCCT
1 TTGAAAAAGCCT
77978049 TTGAAAAAGCCT
1 TTGAAAAAGCCT
77978061 TTGAAAA
1 TTGAAAA
77978068 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:77980264 original size:30 final size:30
Alignment explanation
Indices: 77980230--77980326 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
77980220 AGCTCACTCC
77980230 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
77980260 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
77980290 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
77980320 TAGCTCA
1 TAGCTCA
77980327 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:77984600 original size:55 final size:56
Alignment explanation
Indices: 77984516--77984634 Score: 222
Period size: 55 Copynumber: 2.1 Consensus size: 56
77984506 ACAAGGGATG
77984516 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAA-AAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
77984571 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
77984627 ATGGGCAA
1 ATGGGCAA
77984635 TAAACTAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 50 0.81
56 12 0.19
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:77984899 original size:17 final size:17
Alignment explanation
Indices: 77984879--77984913 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
77984869 CTAAATAGCC
77984879 CATGGTTCAAATCTTTA
1 CATGGTTCAAATCTTTA
77984896 CATGGTTCAAATCTTTA
1 CATGGTTCAAATCTTTA
77984913 C
1 C
77984914 TATGTCATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (17 bp):
CATGGTTCAAATCTTTA
Found at i:77986014 original size:40 final size:40
Alignment explanation
Indices: 77985776--77986000 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
77985766 TCGAATGATG
* * * *
77985776 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77985816 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77985856 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77985895 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77985935 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77985976 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77986001 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77986022 original size:119 final size:119
Alignment explanation
Indices: 77985776--77986033 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
77985766 TCGAATGATG
* *
77985776 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
77985841 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
77985895 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
77985958 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
77986015 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77986034 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:77991406 original size:25 final size:25
Alignment explanation
Indices: 77991378--77991425 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
77991368 TATCGATTCT
77991378 CAGCTAGT-ATGAGCTTACCGATTTG
1 CAGCTAGTGA-GAGCTTACCGATTTG
*
77991403 CAGCTCGTGAGAGCTTACCGATT
1 CAGCTAGTGAGAGCTTACCGATT
77991426 CTCATATCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (25 bp):
CAGCTAGTGAGAGCTTACCGATTTG
Found at i:77991435 original size:25 final size:23
Alignment explanation
Indices: 77991388--77991475 Score: 70
Period size: 25 Copynumber: 3.6 Consensus size: 23
77991378 CAGCTAGTAT
*
77991388 GAGCTTACCGATTTGCAGCTCGTGA
1 GAGCTTACCGATTT-CA-ATCGTGA
77991413 GAGCTTACCGATTCTCATATCGT-A
1 GAGCTTACCGATT-TCA-ATCGTGA
*
77991437 TGAGCTTACCAAATTTCAACTCGTGA
1 -GAGCTTACC-GATTTCAA-TCGTGA
* *
77991463 GAGCATACAGATT
1 GAGCTTACCGATT
77991476 CATAGCTCGG
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
24 5 0.10
25 42 0.81
26 5 0.10
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (23 bp):
GAGCTTACCGATTTCAATCGTGA
Found at i:77992963 original size:27 final size:27
Alignment explanation
Indices: 77992933--77993110 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
77992923 ATATTGAGCC
* *
77992933 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
77992960 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
77992987 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
77993015 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
77993042 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
77993069 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
77993096 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77993111 GTACAATTTA
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.02
27 103 0.80
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:77993072 original size:82 final size:81
Alignment explanation
Indices: 77992954--77993109 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
77992944 TGCTATATAA
* *
77992954 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCA-AACTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACAAAGT-AGAA-TCGC
77993018 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
77993036 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACAAAGTAGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACAAAGTAGAATCGCA
77993100 CACTTAGTGC
65 CACTTAGTGC
77993110 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 17 0.26
82 49 0.74
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACAAAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78002358 original size:27 final size:27
Alignment explanation
Indices: 78002328--78002505 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
78002318 ATATTGAGCC
* *
78002328 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
78002355 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
78002382 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
78002410 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
78002437 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
78002464 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
78002491 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78002506 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:78002440 original size:55 final size:54
Alignment explanation
Indices: 78002328--78002505 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
78002318 ATATTGAGCC
* * * * *
78002328 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
78002382 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
78002437 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
78002491 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78002506 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:78007597 original size:25 final size:25
Alignment explanation
Indices: 78007543--78007613 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 25
78007533 CCGATTGAAG
*
78007543 CTCGTAAGAGCTTATCGATTCTCAG
1 CTCGTAAGAGCTTATCGATTCTCAA
* * *
78007568 TTCGTATGAGCTTATTGATT-TACAA
1 CTCGTAAGAGCTTATCGATTCT-CAA
* * *
78007593 CTCGTGAGAGCATACCGATTC
1 CTCGTAAGAGCTTATCGATTC
78007614 ATAGCTCGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (25 bp):
CTCGTAAGAGCTTATCGATTCTCAA
Found at i:78008562 original size:54 final size:54
Alignment explanation
Indices: 78008494--78008608 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
78008484 GCATATAAGT
* *
78008494 GTAAAATTACTGAAATACCCTCGAAAAGCATAATGATAAAAATACACTCGAAGG
1 GTAAAATTACTGAAATACCCCCGAAAAGCAAAATGATAAAAATACACTCGAAGG
* ** * ** * *
78008548 GTAAAATTATTGAAATACCCCCGAAGGGTAAAATGATCGAAATACCCTCGATGG
1 GTAAAATTACTGAAATACCCCCGAAAAGCAAAATGATAAAAATACACTCGAAGG
78008602 GTAAAAT
1 GTAAAAT
78008609 GACCGTAACG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (54 bp):
GTAAAATTACTGAAATACCCCCGAAAAGCAAAATGATAAAAATACACTCGAAGG
Found at i:78008563 original size:27 final size:27
Alignment explanation
Indices: 78008505--78008667 Score: 116
Period size: 27 Copynumber: 6.0 Consensus size: 27
78008495 TAAAATTACT
** * * *
78008505 GAAATACCCTCGAAAAGCATAATGATA
1 GAAATACCCTCGAAGGGTAAAATGATC
* * * *
78008532 AAAATACACTCGAAGGGTAAAATTATT
1 GAAATACCCTCGAAGGGTAAAATGATC
*
78008559 GAAATACCCCCGAAGGGTAAAATGATC
1 GAAATACCCTCGAAGGGTAAAATGATC
* *
78008586 GAAATACCCTCGATGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGATC
* ** *
78008613 GTAACGCCC-CTGTAA-GGTAAAATGACC
1 GAAATACCCTC-G-AAGGGTAAAATGATC
* *
78008640 GTAATA-CCTCTATAGGGTAAAATGATC
1 GAAATACCCTCGA-AGGGTAAAATGATC
78008667 G
1 G
78008668 TAATGTCGCT
Statistics
Matches: 107, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.01
26 4 0.04
27 101 0.94
28 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (27 bp):
GAAATACCCTCGAAGGGTAAAATGATC
Found at i:78008632 original size:54 final size:54
Alignment explanation
Indices: 78008574--78008692 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
78008564 ACCCCCGAAG
*
78008574 GGTAAAATGATCGAAATACCCTCGAT-GGGTAAAATGACCGTAACGCCCCTGTAA
1 GGTAAAATGACCGAAATA-CCTCGATAGGGTAAAATGACCGTAACGCCCCTGTAA
* * * * * * *
78008628 GGTAAAATGACCGTAATACCTCTATAGGGTAAAATGATCGTAATGTCGCTGTAG
1 GGTAAAATGACCGAAATACCTCGATAGGGTAAAATGACCGTAACGCCCCTGTAA
78008682 GGTAAAATGAC
1 GGTAAAATGAC
78008693 TATTTTACCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 6 0.11
54 50 0.89
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (54 bp):
GGTAAAATGACCGAAATACCTCGATAGGGTAAAATGACCGTAACGCCCCTGTAA
Found at i:78008669 original size:27 final size:27
Alignment explanation
Indices: 78008572--78008692 Score: 109
Period size: 27 Copynumber: 4.5 Consensus size: 27
78008562 ATACCCCCGA
* * *
78008572 AGGGTAAAATGATCGAAATACCCTCGAT
1 AGGGTAAAATGACCGTAATA-CCTCTAT
** * *
78008600 -GGGTAAAATGACCGTAACGCCCCTGT
1 AGGGTAAAATGACCGTAATACCTCTAT
*
78008626 AAGGTAAAATGACCGTAATACCTCTAT
1 AGGGTAAAATGACCGTAATACCTCTAT
* ** * *
78008653 AGGGTAAAATGATCGTAATGTCGCTGT
1 AGGGTAAAATGACCGTAATACCTCTAT
78008680 AGGGTAAAATGAC
1 AGGGTAAAATGAC
78008693 TATTTTACCC
Statistics
Matches: 73, Mismatches: 19, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
26 4 0.05
27 69 0.95
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATACCTCTAT
Found at i:78008741 original size:24 final size:24
Alignment explanation
Indices: 78008711--78008796 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 24
78008701 CCCTCGGGGT
* *
78008711 TAAATGAGTGATTTGCCTATGATG
1 TAAATGATTGATTTGTCTATGATG
*
78008735 TAAATGATTGATTTTTCTGA-GATG
1 TAAATGATTGATTTGTCT-ATGATG
* * * *
78008759 TAAATGACTGATTTGTTTGTGATT
1 TAAATGATTGATTTGTCTATGATG
78008783 TAAATGATTGATTT
1 TAAATGATTGATTT
78008797 ATTTGTGATT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 50 0.98
25 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (24 bp):
TAAATGATTGATTTGTCTATGATG
Found at i:78008807 original size:24 final size:23
Alignment explanation
Indices: 78008730--78008805 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 23
78008720 GATTTGCCTA
78008730 TGATGTAAATGATTGATTTTTCTG
1 TGATGTAAATGATTGATTTTT-TG
* *
78008754 AGATGTAAATGACTGATTTGTTTG
1 TGATGTAAATGATTGATTT-TTTG
*
78008778 TGATTTAAATGATTGATTTATTTG
1 TGATGTAAATGATTGATTT-TTTG
78008802 TGAT
1 TGAT
78008806 TTGTATGACT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 43 0.96
25 2 0.04
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (23 bp):
TGATGTAAATGATTGATTTTTTG
Found at i:78008813 original size:24 final size:24
Alignment explanation
Indices: 78008730--78008819 Score: 92
Period size: 24 Copynumber: 3.8 Consensus size: 24
78008720 GATTTGCCTA
* *
78008730 TGATGTAAATGATTGATTT-TTCTG
1 TGATTTAAATGACTGATTTATT-TG
* * *
78008754 AGATGTAAATGACTGATTTGTTTG
1 TGATTTAAATGACTGATTTATTTG
*
78008778 TGATTTAAATGATTGATTTATTTG
1 TGATTTAAATGACTGATTTATTTG
**
78008802 TGATTTGTATGACTGATT
1 TGATTTAAATGACTGATT
78008820 CTGTGCATGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
24 54 0.96
25 2 0.04
ACGTcount: A:0.27, C:0.03, G:0.21, T:0.49
Consensus pattern (24 bp):
TGATTTAAATGACTGATTTATTTG
Found at i:78008973 original size:26 final size:26
Alignment explanation
Indices: 78008935--78008985 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
78008925 TTGACCACAT
78008935 ATACTGTTACTGGCAACTTTGCTACA
1 ATACTGTTACTGGCAACTTTGCTACA
* *
78008961 ATACTGTTGCTGGCAGCTTTGCTAC
1 ATACTGTTACTGGCAACTTTGCTAC
78008986 GATGCTATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
ATACTGTTACTGGCAACTTTGCTACA
Found at i:78009000 original size:26 final size:26
Alignment explanation
Indices: 78008945--78009000 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
78008935 ATACTGTTAC
* *
78008945 TGGCAACTTTGCTACAATACTGTTGC
1 TGGCAACTTTGCTACAATACTATTGA
* * *
78008971 TGGCAGCTTTGCTACGATGCTATTGA
1 TGGCAACTTTGCTACAATACTATTGA
78008997 TGGC
1 TGGC
78009001 TTTGTGCCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (26 bp):
TGGCAACTTTGCTACAATACTATTGA
Found at i:78009168 original size:32 final size:32
Alignment explanation
Indices: 78008994--78009179 Score: 205
Period size: 32 Copynumber: 5.8 Consensus size: 32
78008984 ACGATGCTAT
*
78008994 TGATGGCTTTGTGCCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
** *
78009026 TGATGG-TTGTGTGATGATCATATTAACCATTAC
1 TGATGGCTT-TGTGCCGATCATATT-ACTATTAC
* * * *
78009059 TGATGGCTGTGTACCGATCATATCACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
78009091 TAATGGCTTTATGCCGATCATACTACTATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
78009123 TGATGG-TTGTGTGCCGATCATATTACTACTAC
1 TGATGGCTT-TGTGCCGATCATATTACTATTAC
* *
78009155 TGATGGCTTTGTGCCAACCATATTA
1 TGATGGCTTTGTGCCGATCATATTA
78009180 TTGTACTTAT
Statistics
Matches: 127, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
31 4 0.03
32 95 0.75
33 27 0.21
34 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTATTAC
Found at i:78012117 original size:19 final size:18
Alignment explanation
Indices: 78012081--78012120 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
78012071 TTTCCACTCG
*
78012081 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
78012099 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
78012118 TTT
1 TTT
78012121 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:78013164 original size:17 final size:16
Alignment explanation
Indices: 78013139--78013195 Score: 82
Period size: 15 Copynumber: 3.6 Consensus size: 16
78013129 TAGCTTCTTC
78013139 TTTTTTTTCACGAAAT
1 TTTTTTTTCACGAAAT
78013155 TTTGTTTTTCAC-AAAT
1 TTT-TTTTTCACGAAAT
*
78013171 TTTTTTTTCACG-ATT
1 TTTTTTTTCACGAAAT
78013186 TTTTTTTTCA
1 TTTTTTTTCA
78013196 ACTTGATATC
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
15 20 0.53
16 10 0.26
17 8 0.21
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.63
Consensus pattern (16 bp):
TTTTTTTTCACGAAAT
Found at i:78013254 original size:11 final size:11
Alignment explanation
Indices: 78013238--78013269 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
78013228 AGCCCAATTT
78013238 TTTTTTTTGAA
1 TTTTTTTTGAA
78013249 -TTTTTTTGAA
1 TTTTTTTTGAA
78013259 TTTTTTTTGAA
1 TTTTTTTTGAA
78013270 AAAACTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:78021356 original size:19 final size:18
Alignment explanation
Indices: 78021320--78021359 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
78021310 TTTCCACTCG
*
78021320 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
78021338 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
78021357 TTT
1 TTT
78021360 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:78029787 original size:14 final size:14
Alignment explanation
Indices: 78029768--78029794 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78029758 AATGGAAAGG
78029768 ACCGTATACCATCT
1 ACCGTATACCATCT
78029782 ACCGTATACCATC
1 ACCGTATACCATC
78029795 AAACTATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.26
Consensus pattern (14 bp):
ACCGTATACCATCT
Found at i:78033532 original size:37 final size:37
Alignment explanation
Indices: 78033470--78033608 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
78033460 AGCTCAGACG
* *
78033470 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78033507 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78033544 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78033581 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
78033609 TAGAGCTCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78034042 original size:49 final size:47
Alignment explanation
Indices: 78033727--78034324 Score: 980
Period size: 47 Copynumber: 12.6 Consensus size: 47
78033717 CCCTTCGGCA
* * * * * *
78033727 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78033774 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78033821 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78033868 CTTATCACATATCTACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78033915 CTTATCACATATCTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78033962 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78034009 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78034058 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78034105 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78034154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78034201 CTTATCACATATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78034250 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78034299 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
78034325 ATACACACTG
Statistics
Matches: 523, Mismatches: 22, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 338 0.65
49 185 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78034067 original size:96 final size:96
Alignment explanation
Indices: 78033727--78034324 Score: 987
Period size: 96 Copynumber: 6.3 Consensus size: 96
78033717 CCCTTCGGCA
* * * * * * *
78033727 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
78033790 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
78033821 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGGCATTAGGCCTTATCACATATCTAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78033884 ACTTTCACATTCATCACATCGGGCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
78033915 CTTATCAC--ATATCTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78033978 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
78034009 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78034074 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
78034105 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
78034170 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
78034201 CTTATCACATATATATACACTTTCACATTCATCAGATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
78034266 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
78034299 CTTATCAC--ATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
78034325 ATACACACTG
Statistics
Matches: 476, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 178 0.37
96 250 0.53
98 47 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78034324 original size:16 final size:16
Alignment explanation
Indices: 78034303--78034333 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78034293 TTAGGCCTTA
*
78034303 TCACATATATACACTT
1 TCACATATACACACTT
78034319 TCACATATACACACT
1 TCACATATACACACT
78034334 GTCTTGGCTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (16 bp):
TCACATATACACACTT
Found at i:78038447 original size:40 final size:40
Alignment explanation
Indices: 78038397--78038625 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
78038387 CACCAGCATG
* * * * *
78038397 ATTGCTCTTCGGGACCTAGCCCGGATATAACCACAAGCTCA
1 ATTGC-CTTCGGGTCTTAGCCCGGATATAACAACTAGCACA
* * * *
78038438 ATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGA
1 ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-A
* * *
78038479 A-TGCCTTCGGGTCTTAGCCCGGATGTATCAACTTGCACA
1 ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACA
* *
78038518 ATTGCCTTCGGGTCTTAGCCCGGATATATCAATTCA-CACA
1 ATTGCCTTCGGGTCTTAGCCCGGATATAACAACT-AGCACA
* * * *
78038558 AATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACA
1 ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACA
* *
78038598 AATGCCTTCGGGTCTTATCCCGGATATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATA
78038626 TCAATTCGCA
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.01
40 155 0.95
41 7 0.04
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACA
Found at i:78038626 original size:40 final size:40
Alignment explanation
Indices: 78038440--78038637 Score: 299
Period size: 40 Copynumber: 5.0 Consensus size: 40
78038430 CAAGCTCAAT
* * * * *
78038440 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
78038480 TGCCTTCGGGTCTTAGCCCGGATGTATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
78038520 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
78038560 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
78038600 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACA
78038638 CATAGTGCTT
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 141 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:78038721 original size:29 final size:29
Alignment explanation
Indices: 78038655--78038726 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
78038645 CTTAATAATC
*
78038655 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
78038685 AACTCGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
78038714 AGCCCGCACACTT
1 AACCCGCACACTT
78038727 GAATACTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 3 0.08
29 31 0.84
30 3 0.08
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:78038792 original size:43 final size:43
Alignment explanation
Indices: 78038726--78039063 Score: 559
Period size: 43 Copynumber: 7.7 Consensus size: 43
78038716 CCCGCACACT
* *
78038726 TGAATACTTATTGCCCGCACACTTAGTGCCAATCTCGCAACCG
1 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
78038769 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
1 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
78038812 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
1 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
78038855 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
1 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
78038898 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
1 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
*
78038941 TGAACACTTATTGCCCGATTGCCCGTACACTTAGTGCCAATCTCGCAACCG
1 TGAACACTTATTGCCC----G--C--ACACTTAGTGCCAATCTCACAACCG
* *
78038992 TGAATACTTATTGCCCGCACACTTAGTGCCAATCTCGCAACCG
1 TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
78039035 TGAACACTTATTGCCCGCACACTTAGTGC
1 TGAACACTTATTGCCCGCACACTTAGTGC
78039064 TGAAAACCAA
Statistics
Matches: 282, Mismatches: 5, Indels: 16
0.93 0.02 0.05
Matches are distributed among these distances:
43 239 0.85
45 1 0.00
47 2 0.01
49 1 0.00
51 39 0.14
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (43 bp):
TGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCG
Found at i:78038983 original size:51 final size:50
Alignment explanation
Indices: 78038907--78039051 Score: 205
Period size: 51 Copynumber: 3.0 Consensus size: 50
78038897 GTGAACACTT
*
78038907 ATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCG
1 ATTGCCCG-ACACTTAGTGCCAATCTCGCAACCGTGAACACTTATTGCCCG
*
78038958 ATTGCCCGTACACTTAGTGCCAATCTCGCAACCGTGAATACTTATTGCCC-
1 ATTGCCCG-ACACTTAGTGCCAATCTCGCAACCGTGAACACTTATTGCCCG
78039008 ---G--C-ACACTTAGTGCCAATCTCGCAACCGTGAACACTTATTGCCCG
1 ATTGCCCGACACTTAGTGCCAATCTCGCAACCGTGAACACTTATTGCCCG
78039052 CACACTTAGT
Statistics
Matches: 89, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
43 40 0.45
45 1 0.01
47 1 0.01
51 47 0.53
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (50 bp):
ATTGCCCGACACTTAGTGCCAATCTCGCAACCGTGAACACTTATTGCCCG
Found at i:78039001 original size:28 final size:28
Alignment explanation
Indices: 78038916--78039006 Score: 86
Period size: 28 Copynumber: 3.4 Consensus size: 28
78038906 TATTGCCCGC
*
78038916 ACACTTAGTGCCAATCTCACAACCGTGA
1 ACACTTAGTGCCAATCTCGCAACCGTGA
* *
78038944 ACACTTATTGCCCGAT-T-GC--CCGT--
1 ACACTTAGTG-CCAATCTCGCAACCGTGA
78038967 ACACTTAGTGCCAATCTCGCAACCGTGA
1 ACACTTAGTGCCAATCTCGCAACCGTGA
* *
78038995 ATACTTATTGCC
1 ACACTTAGTGCC
78039007 CGCACACTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
22 4 0.08
23 10 0.20
24 2 0.04
25 4 0.08
26 4 0.08
27 1 0.02
28 20 0.41
29 4 0.08
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (28 bp):
ACACTTAGTGCCAATCTCGCAACCGTGA
Found at i:78039025 original size:94 final size:94
Alignment explanation
Indices: 78038864--78039051 Score: 340
Period size: 94 Copynumber: 2.0 Consensus size: 94
78038854 GTGAACACTT
78038864 ATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCA
1 ATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCA
78038929 ATCTCACAACCGTGAACACTTATTGCCCG
66 ATCTCACAACCGTGAACACTTATTGCCCG
* * *
78038958 ATTGCCCGTACACTTAGTGCCAATCTCGCAACCGTGAATACTTATTGCCCGCACACTTAGTGCCA
1 ATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCA
*
78039023 ATCTCGCAACCGTGAACACTTATTGCCCG
66 ATCTCACAACCGTGAACACTTATTGCCCG
78039052 CACACTTAGT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (94 bp):
ATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCA
ATCTCACAACCGTGAACACTTATTGCCCG
Found at i:78041164 original size:47 final size:47
Alignment explanation
Indices: 78041091--78041216 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
78041081 CGGGACTTAT
* * * * * *
78041091 CACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGC
1 CACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTAC
* * * *
78041138 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTAC
78041185 CACATATATACACTTTCACATTCATCACATCG
1 CACATATATACACTTTCACATTCATCACATCG
78041217 AATCCTAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.31
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTAC
Found at i:78044589 original size:43 final size:43
Alignment explanation
Indices: 78044454--78044589 Score: 129
Period size: 43 Copynumber: 3.2 Consensus size: 43
78044444 GCATTTGAGC
* * *
78044454 CTAGAAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCTGGTGAAATGATATCGAACTTAAAGGT
* * * ** *
78044497 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATC-AGGCTTCGA-GC
1 CTAGCAGGC-GTAATGCTGGTGAAATGA-TATCGA-ACTTAAAGGT
78044538 CTAGCAGGCGTAATGCTGGTGAAATGATATCGAACTTAAAGGT
1 CTAGCAGGCGTAATGCTGGTGAAATGATATCGAACTTAAAGGT
78044581 CTAGCAGGC
1 CTAGCAGGC
78044590 TTATTGCCAG
Statistics
Matches: 70, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
40 3 0.04
41 17 0.24
42 22 0.31
43 25 0.36
44 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (43 bp):
CTAGCAGGCGTAATGCTGGTGAAATGATATCGAACTTAAAGGT
Found at i:78050288 original size:27 final size:24
Alignment explanation
Indices: 78050233--78050299 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 24
78050223 TTAATAAATT
*
78050233 CGCACACATAGTGCATATATTCATT
1 CGCACACATAGTGC-TATATTCATA
*
78050258 CGCACACATAGTGCTAGCTTTTCCATA
1 CGCACACATAGTGCTA--TATT-CATA
*
78050285 CGCACACATAATGCT
1 CGCACACATAGTGCT
78050300 GCCCCATTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 2 0.06
25 14 0.39
26 3 0.08
27 17 0.47
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (24 bp):
CGCACACATAGTGCTATATTCATA
Done.