Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 240 of 310
Found at i:78986029 original size:13 final size:13
Alignment explanation
Indices: 78986011--78986036 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78986001 TAGCACCTCG
78986011 AACAGGTCAAGGT
1 AACAGGTCAAGGT
78986024 AACAGGTCAAGGT
1 AACAGGTCAAGGT
78986037 TCCTATCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15
Consensus pattern (13 bp):
AACAGGTCAAGGT
Found at i:78986939 original size:49 final size:50
Alignment explanation
Indices: 78986885--78986982 Score: 153
Period size: 51 Copynumber: 2.0 Consensus size: 50
78986875 GTTATTCTAG
* *
78986885 TTTAATTAATTAAGTTG-TTTTAATTGTCTTTAGTTGTTTAAATAATTAT
1 TTTAATTAATTAAGTTGTTTTTAATTGTCTTTAGCTGCTTAAATAATTAT
*
78986934 TTTAATTAATTAAGTTGTTTTTTAATTTTCTTTAGCTGCTTAAATAATT
1 TTTAATTAATTAAGTTG-TTTTTAATTGTCTTTAGCTGCTTAAATAATT
78986983 TCAGCAATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 17 0.39
51 27 0.61
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (50 bp):
TTTAATTAATTAAGTTGTTTTTAATTGTCTTTAGCTGCTTAAATAATTAT
Found at i:78986992 original size:51 final size:49
Alignment explanation
Indices: 78986888--78986994 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 49
78986878 ATTCTAGTTT
* * ***
78986888 AATTAATTAAGTTGTTTTAATTGTCTTTAGTTGTTTAAATAATTATTTT
1 AATTAATTAAGTTGTTTTAATTGTCTTTAGCTGCTTAAATAATTATAGC
*
78986937 AATTAATTAAGTTGTTTTTTAATTTTCTTTAGCTGCTTAAATAATT-TCAGC
1 AATTAATTAAGTTG--TTTTAATTGTCTTTAGCTGCTTAAATAATTAT-AGC
78986988 AATTAAT
1 AATTAAT
78986995 ATGTTCTAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 14 0.29
50 1 0.02
51 34 0.69
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.53
Consensus pattern (49 bp):
AATTAATTAAGTTGTTTTAATTGTCTTTAGCTGCTTAAATAATTATAGC
Found at i:78994136 original size:80 final size:79
Alignment explanation
Indices: 78994052--78994223 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
78994042 GGACTAAGAT
*
78994052 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
78994116 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
78994132 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
78994197 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
78994211 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78994224 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:78994203 original size:39 final size:39
Alignment explanation
Indices: 78993999--78994221 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
78993989 TTGAATGCTG
* * * * *
78993999 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
78994039 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
78994078 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* **
78994119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
78994159 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
78994198 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
78994222 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:78994241 original size:79 final size:80
Alignment explanation
Indices: 78994079--78994256 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
78994069 AGATACAAAT
* * * *
78994079 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
78994144 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
78994159 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
78994223 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
78994238 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78994257 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:78998149 original size:214 final size:214
Alignment explanation
Indices: 78997780--78998207 Score: 847
Period size: 214 Copynumber: 2.0 Consensus size: 214
78997770 TATTTGTCAC
78997780 ATAGGTTCAAACTTACCGAGCTCAACACCAAGTATAAGCATAGCACCTATTAGCCACGTGCTCAA
1 ATAGGTTCAAACTTACCGAGCTCAACACCAAGTATAAGCATAGCACCTATTAGCCACGTGCTCAA
78997845 GACACTTACCCGACCCGCTGTCCGCGATCGACTCAATAGTGTCGCACACATAGTGTCCATAATGA
66 GACACTTACCCGACCCGCTGTCCGCGATCGACTCAATAGTGTCGCACACATAGTGTCCATAATGA
78997910 TTCACGAATGTATATTGAGCCCGCACACTCAGTGCTATACAATCAAATCGCACACTTAGTGCTAC
131 TTCACGAATGTATATTGAGCCCGCACACTCAGTGCTATACAATCAAATCGCACACTTAGTGCTAC
78997975 ATAGTTAGACTCGCACACT
196 ATAGTTAGACTCGCACACT
*
78997994 ATAGGTTCGAACTTACCGAGCTCAACACCAAGTATAAGCATAGCACCTATTAGCCACGTGCTCAA
1 ATAGGTTCAAACTTACCGAGCTCAACACCAAGTATAAGCATAGCACCTATTAGCCACGTGCTCAA
78998059 GACACTTACCCGACCCGCTGTCCGCGATCGACTCAATAGTGTCGCACACATAGTGTCCATAATGA
66 GACACTTACCCGACCCGCTGTCCGCGATCGACTCAATAGTGTCGCACACATAGTGTCCATAATGA
78998124 TTCACGAATGTATATTGAGCCCGCACACTCAGTGCTATACAATCAAATCGCACACTTAGTGCTAC
131 TTCACGAATGTATATTGAGCCCGCACACTCAGTGCTATACAATCAAATCGCACACTTAGTGCTAC
78998189 ATAGTTAGACTCGCACACT
196 ATAGTTAGACTCGCACACT
78998208 TAGTGCCGCA
Statistics
Matches: 213, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 213 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (214 bp):
ATAGGTTCAAACTTACCGAGCTCAACACCAAGTATAAGCATAGCACCTATTAGCCACGTGCTCAA
GACACTTACCCGACCCGCTGTCCGCGATCGACTCAATAGTGTCGCACACATAGTGTCCATAATGA
TTCACGAATGTATATTGAGCCCGCACACTCAGTGCTATACAATCAAATCGCACACTTAGTGCTAC
ATAGTTAGACTCGCACACT
Found at i:78998175 original size:27 final size:27
Alignment explanation
Indices: 78998145--78998459 Score: 202
Period size: 27 Copynumber: 11.6 Consensus size: 27
78998135 ATATTGAGCC
* *
78998145 CGCACACTCAGTGCTATACAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
78998172 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
78998200 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
78998227 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
78998254 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
** **
78998281 CGCACACTTAGTGCTGTACAATTTAAT
1 CGCACACTTAGTGCTACACAATCAAAT
**
78998308 CCGCACACTTAGTGCTACGTAATCAAAT
1 -CGCACACTTAGTGCTACACAATCAAAT
* *
78998336 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACACAATCAAA-T
** *** *
78998364 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
78998391 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * *
78998418 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
78998445 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78998460 GTACAATTTA
Statistics
Matches: 235, Mismatches: 46, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
27 167 0.71
28 68 0.29
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:78998257 original size:82 final size:82
Alignment explanation
Indices: 78998171--78998458 Score: 390
Period size: 82 Copynumber: 3.5 Consensus size: 82
78998161 TACAATCAAA
* * *
78998171 TCGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTT
1 TCGCACACTTAGTGCAACATAGTCAGAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTT
78998236 AGTGCATCATATTCATT
66 AGTGCATCATATTCATT
* * *
78998253 TCGCACACTTAGTGCAACATAGTC-GAATCGCACACTTAGTGCTGTACAAT--TTAATCCGCACA
1 TCGCACACTTAGTGCAACATAGTCAGAATCGCACACTTAGTGCCG--C-ATGGTCAATTCGCACA
* * **
78998315 CTTAGTGC-TACGTAATCAAA
63 CTTAGTGCAT-CATATTCATT
*
78998335 TCGCACACTTAGTGCTACATAGTCA-AACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACT
1 TCGCACACTTAGTGCAACATAGTCAGAA-TCGCACACTTAGTGCCGCATGGTCAATTCGCACACT
78998399 TAGTGCATCATATTCATT
65 TAGTGCATCATATTCATT
78998417 TCGCACACTTAGTGCAACATAGTCA-AATCGCACACTTAGTGC
1 TCGCACACTTAGTGCAACATAGTCAGAATCGCACACTTAGTGC
78998459 TGTACAATTT
Statistics
Matches: 178, Mismatches: 19, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
80 2 0.01
81 35 0.20
82 121 0.68
83 18 0.10
84 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (82 bp):
TCGCACACTTAGTGCAACATAGTCAGAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTT
AGTGCATCATATTCATT
Found at i:78998415 original size:164 final size:164
Alignment explanation
Indices: 78998144--78998473 Score: 597
Period size: 164 Copynumber: 2.0 Consensus size: 164
78998134 TATATTGAGC
* * *
78998144 CCGCACACTCAGTGCTATACAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCACACTT
1 CCGCACACTCAGTGCTACACAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
78998209 AGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATA
66 AGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATA
*
78998274 GTCGAATCGCACACTTAGTGCTGTACAATTTAAT
131 GTCAAATCGCACACTTAGTGCTGTACAATTTAAT
* **
78998308 CCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CCGCACACTCAGTGCTACACAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
78998373 AGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATA
66 AGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATA
78998438 GTCAAATCGCACACTTAGTGCTGTACAATTTAAT
131 GTCAAATCGCACACTTAGTGCTGTACAATTTAAT
78998472 CC
1 CC
78998474 CGCGCACCTA
Statistics
Matches: 159, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
164 159 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (164 bp):
CCGCACACTCAGTGCTACACAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
AGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATA
GTCAAATCGCACACTTAGTGCTGTACAATTTAAT
Found at i:79004809 original size:50 final size:50
Alignment explanation
Indices: 79004757--79004888 Score: 151
Period size: 50 Copynumber: 2.6 Consensus size: 50
79004747 ATGAACAAAT
* *
79004757 GAGTTACTTAATGCATGACTTAATTTAATCATGCAAGATTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATCATGCAA-ACTTAACTAACAT-A
* * *
79004809 GAGTTACATAATGCATGTA-ATAAATT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATG-ACTTAATTTAATCATGCAAACTTAACTAACAT-A
* *
79004859 GAGTTACATAATGCATGACTTTATTAAATC
1 GAGTTACATAATGCATGACTTAATTTAATC
79004889 CAAAAAACAT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
49 1 0.01
50 34 0.51
51 10 0.15
52 21 0.31
53 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATTTAATCATGCAAACTTAACTAACATA
Found at i:79013814 original size:50 final size:49
Alignment explanation
Indices: 79013740--79014630 Score: 1507
Period size: 50 Copynumber: 17.8 Consensus size: 49
79013730 CATGGTTTAA
* * * * *
79013740 GATGCAAAC-TAAATGAACAAATGAGTTACTTAATGCATG-ACTTAATTTAAT
1 GATGCAAACTTAACT-AACATA-GAGTTACATAATGCATGTA-ATAAATT-AT
* *
79013791 CATGCAAGATTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAA-ACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79013842 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79013892 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79013942 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79013992 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014042 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014092 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014142 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014192 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014242 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014292 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014342 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014392 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014442 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014492 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014542 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTAT
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATGTAATAAATTAT
79014592 GATGCAAACTTAACTAACATGAGAGTTACATAATGCATG
1 GATGCAAACTTAACTAACAT-AGAGTTACATAATGCATG
79014631 ACTTTATTAA
Statistics
Matches: 827, Mismatches: 9, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
50 781 0.94
51 14 0.02
52 26 0.03
53 6 0.01
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (49 bp):
GATGCAAACTTAACTAACATAGAGTTACATAATGCATGTAATAAATTAT
Found at i:79013921 original size:100 final size:100
Alignment explanation
Indices: 79013792--79014630 Score: 1660
Period size: 100 Copynumber: 8.4 Consensus size: 100
79013782 TAATTTAATC
*
79013792 ATGCAAGATTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACT
1 ATGCAA-ACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACT
79013857 AACATGAGAGTTACATAATGCATGTAATAAATTATG
65 AACATGAGAGTTACATAATGCATGTAATAAATTATG
79013893 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79013958 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79013993 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014058 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79014093 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014158 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79014193 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014258 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79014293 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014358 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79014393 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014458 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79014493 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014558 ACATGAGAGTTACATAATGCATGTAATAAATTATG
66 ACATGAGAGTTACATAATGCATGTAATAAATTATG
79014593 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATG
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATG
79014631 ACTTTATTAA
Statistics
Matches: 737, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
100 731 0.99
101 6 0.01
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (100 bp):
ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
ACATGAGAGTTACATAATGCATGTAATAAATTATG
Found at i:79013971 original size:150 final size:150
Alignment explanation
Indices: 79013792--79014630 Score: 1660
Period size: 150 Copynumber: 5.6 Consensus size: 150
79013782 TAATTTAATC
*
79013792 ATGCAAGATTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACT
1 ATGCAA-ACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACT
79013857 AACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACA
65 AACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACA
79013922 TAATGCATGTAATAAATTATG
130 TAATGCATGTAATAAATTATG
79013943 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014008 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
66 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
79014073 AATGCATGTAATAAATTATG
131 AATGCATGTAATAAATTATG
79014093 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014158 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
66 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
79014223 AATGCATGTAATAAATTATG
131 AATGCATGTAATAAATTATG
79014243 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014308 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
66 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
79014373 AATGCATGTAATAAATTATG
131 AATGCATGTAATAAATTATG
79014393 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014458 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
66 ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
79014523 AATGCATGTAATAAATTATG
131 AATGCATGTAATAAATTATG
79014543 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
1 ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
79014608 ACATGAGAGTTACATAATGCATG
66 ACATGAGAGTTACATAATGCATG
79014631 ACTTTATTAA
Statistics
Matches: 687, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
150 681 0.99
151 6 0.01
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (150 bp):
ATGCAAACTTAACTAACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTA
ACATGAGAGTTACATAATGCATGTAATAAATTATGATGCAAACTTAACTAACATGAGAGTTACAT
AATGCATGTAATAAATTATG
Found at i:79018267 original size:19 final size:19
Alignment explanation
Indices: 79018243--79018290 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
79018233 CCGTGTGAGA
79018243 CACACAGGCCCATTGGGCC
1 CACACAGGCCCATTGGGCC
* *
79018262 CACACA-GCCAATTTGGCC
1 CACACAGGCCCATTGGGCC
*
79018280 CA-AAAGGCCCA
1 CACACAGGCCCA
79018291 ATATCATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 2 0.08
18 16 0.67
19 6 0.25
ACGTcount: A:0.29, C:0.40, G:0.21, T:0.10
Consensus pattern (19 bp):
CACACAGGCCCATTGGGCC
Found at i:79018814 original size:40 final size:39
Alignment explanation
Indices: 79018760--79018837 Score: 138
Period size: 40 Copynumber: 2.0 Consensus size: 39
79018750 CTTGTAGGGA
*
79018760 AAAAGCAGTTGGCCTAACACCTTGTTATGAAATTGAGCNG
1 AAAAGCAGTCGGCCTAACACCTTGTTATGAAATTGAGC-G
79018800 AAAAGCAGTCGGCCTAACACCTTGTTATGAAATTGAGC
1 AAAAGCAGTCGGCCTAACACCTTGTTATGAAATTGAGC
79018838 CCCTAACATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.24
Consensus pattern (39 bp):
AAAAGCAGTCGGCCTAACACCTTGTTATGAAATTGAGCG
Found at i:79032069 original size:28 final size:28
Alignment explanation
Indices: 79032029--79032107 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
79032019 CATGCATATA
* *
79032029 CCCACTAGGCCCAATCTTATTCAAATGG
1 CCCATTAGGCCCAATCATATTCAAATGG
* * **
79032057 CCCATTTGGCCCAGTTCATATTCTTATGG
1 CCCATTAGGCCCA-ATCATATTCAAATGG
79032086 CCCATTAGGCCCAAATCATATT
1 CCCATTAGGCCC-AATCATATT
79032108 ATACTCATGC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 11 0.27
29 29 0.71
30 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (28 bp):
CCCATTAGGCCCAATCATATTCAAATGG
Found at i:79032339 original size:8 final size:8
Alignment explanation
Indices: 79032312--79032347 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
79032302 GTAGCCCAAC
79032312 TTTCAGCT
1 TTTCAGCT
* *
79032320 TTTCGGCA
1 TTTCAGCT
79032328 TTTCAGCT
1 TTTCAGCT
79032336 TTTCAGCT
1 TTTCAGCT
79032344 TTTC
1 TTTC
79032348 GGGTTTTTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.11, C:0.25, G:0.14, T:0.50
Consensus pattern (8 bp):
TTTCAGCT
Found at i:79035903 original size:13 final size:13
Alignment explanation
Indices: 79035885--79035909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79035875 TCCCATACTT
79035885 ACACACATTATAG
1 ACACACATTATAG
79035898 ACACACATTATA
1 ACACACATTATA
79035910 ACATCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (13 bp):
ACACACATTATAG
Found at i:79037102 original size:16 final size:16
Alignment explanation
Indices: 79037083--79037114 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79037073 AATTGTTTTA
79037083 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
79037099 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
79037115 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:79037417 original size:50 final size:50
Alignment explanation
Indices: 79037329--79037913 Score: 316
Period size: 51 Copynumber: 11.6 Consensus size: 50
79037319 TAAGCATAAG
* * * *
79037329 AGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACACGTAGT
* *
79037379 AGCCTACACTTAGTACTACACATGTGACTTAACCATCTGATACACGTAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACACGTAGT
* * * * * *
79037429 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * * * *
79037480 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * * * *
79037531 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * * * *
79037582 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * * * *
79037633 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * * * *
79037684 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * * * *
79037735 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-C-GTATACACATAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAA--CAATCTG-ATACACGTAGT
* * * *
79037786 AGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACACGTAGT
* * * * * * * * *
79037836 GGTCTGCACTTAGTACCACAGACGTGGCTTAACCATCTGATACACGTAGT
1 AGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACACGTAGT
* *
79037886 AGCCTGCACTTAGTACTACACACGTGAC
1 AGCCTACACTTAGTACTACACATGTGAC
79037914 TCACAACGGA
Statistics
Matches: 492, Mismatches: 38, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
49 2 0.00
50 144 0.29
51 345 0.70
52 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
AGCCTACACTTAGTACTACACATGTGACCTAACAATCTGATACACGTAGT
Found at i:79037485 original size:51 final size:51
Alignment explanation
Indices: 79037418--79037807 Score: 771
Period size: 51 Copynumber: 7.6 Consensus size: 51
79037408 TAACCATCTG
*
79037418 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037469 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037520 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037571 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037622 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037673 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037724 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
1 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
79037775 ATACACATAGTAGCCTGCACTTAGTACTACACA
1 ATACACATAGTAGCCTGCACTTAGTACTACACA
79037808 TGCGACCTAT
Statistics
Matches: 338, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 338 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (51 bp):
ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGT
Found at i:79043720 original size:29 final size:29
Alignment explanation
Indices: 79043675--79043742 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
79043665 GCGGAAAAGG
*
79043675 TAAGTGTGCGAACTTAAAATGCATGGCAC
1 TAAGTGTGCGAACTTAAAATACATGGCAC
** *
79043704 TAAGTGTGCGAGTTTAAAGTACATGGCAC
1 TAAGTGTGCGAACTTAAAATACATGGCAC
79043733 TAAGTGTGCG
1 TAAGTGTGCG
79043743 TGGTTGATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (29 bp):
TAAGTGTGCGAACTTAAAATACATGGCAC
Found at i:79043905 original size:174 final size:174
Alignment explanation
Indices: 79043615--79044027 Score: 763
Period size: 174 Copynumber: 2.4 Consensus size: 174
79043605 AAGGAAGTGA
*
79043615 TATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGATAGCGGAAAAGGTAAGT
1 TATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
79043680 GTGCGAACTTAAAATGCATGGCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTG
66 GTGCGAACTTAAAATGCATGGCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTG
79043745 GTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTC
131 GTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTC
79043789 TATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
1 TATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
* * *
79043854 GTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTG
66 GTGCGAACTTAAAATGCATGGCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTG
79043919 GTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTC
131 GTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTC
* * *
79043963 TATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
1 TATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
79044028 ACCTTGAGTT
Statistics
Matches: 232, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 232 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
TATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
GTGCGAACTTAAAATGCATGGCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTG
GTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTC
Found at i:79045446 original size:43 final size:43
Alignment explanation
Indices: 79045391--79045476 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
79045381 CTGTTAACAT
* * *
79045391 CTCGTGTTCGACTCCGGTGTCAGTCTCGGGTTCGGGGTGTTAC
1 CTCGTGTTCGACTCCGGCGACAGCCTCGGGTTCGGGGTGTTAC
*
79045434 CTCGTGTTCGACTCCGGCGACGGCCTCGGGTTCGGGGTGTTAC
1 CTCGTGTTCGACTCCGGCGACAGCCTCGGGTTCGGGGTGTTAC
79045477 ATTTGATTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.07, C:0.28, G:0.36, T:0.29
Consensus pattern (43 bp):
CTCGTGTTCGACTCCGGCGACAGCCTCGGGTTCGGGGTGTTAC
Found at i:79045535 original size:22 final size:22
Alignment explanation
Indices: 79045507--79045552 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
79045497 ATAGTTTAGT
79045507 CGGTTCTAGGACTACCATAGCA
1 CGGTTCTAGGACTACCATAGCA
79045529 CGGTTCTAGGACTACCATAGCA
1 CGGTTCTAGGACTACCATAGCA
79045551 CG
1 CG
79045553 TATGAGTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (22 bp):
CGGTTCTAGGACTACCATAGCA
Found at i:79051908 original size:29 final size:28
Alignment explanation
Indices: 79051872--79051949 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
79051862 TCATGAGATT
79051872 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
79051902 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
79051929 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
79051950 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:79052096 original size:29 final size:29
Alignment explanation
Indices: 79052051--79052118 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
79052041 GCGGAAAAGG
*
79052051 TAAGTGTGCGAACTTAAAATGCATGGCAC
1 TAAGTGTGCGAACTTAAAATACATGGCAC
** *
79052080 TAAGTGTGCGAGTTTAAAGTACATGGCAC
1 TAAGTGTGCGAACTTAAAATACATGGCAC
79052109 TAAGTGTGCG
1 TAAGTGTGCG
79052119 TGGTTGATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (29 bp):
TAAGTGTGCGAACTTAAAATACATGGCAC
Found at i:79052167 original size:174 final size:174
Alignment explanation
Indices: 79051902--79052403 Score: 950
Period size: 174 Copynumber: 2.9 Consensus size: 174
79051892 AAATTGTACA
79051902 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
79051967 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
79052032 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATG
79052076 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
79052141 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
*
79052206 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATG
* *
79052250 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
* * *
79052315 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
79052380 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
79052404 ACCTTGAGTT
Statistics
Matches: 322, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 322 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTAAAATGCATG
Found at i:79058827 original size:28 final size:28
Alignment explanation
Indices: 79058796--79058849 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
79058786 TGTGTTTTAA
*
79058796 TTTATTACATGTTATTAATG-TGTCTACT
1 TTTATTACAAGTT-TTAATGATGTCTACT
79058824 TTTATTACAAGTTTTAATGATGTCTA
1 TTTATTACAAGTTTTAATGATGTCTA
79058850 AGTCCAGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.52
Consensus pattern (28 bp):
TTTATTACAAGTTTTAATGATGTCTACT
Found at i:79062392 original size:27 final size:27
Alignment explanation
Indices: 79062335--79062393 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 27
79062325 TTTCAACAAC
*
79062335 GAAAAAAAGTGAAAAGCAAAGAAAGATT
1 GAAAAAAAGTGAAAAGAAAAGAAAGA-T
79062363 GAAAAAAA-TGAAAAGGAAAAAGAAAG-T
1 GAAAAAAAGTGAAAA-G-AAAAGAAAGAT
79062390 GAAA
1 GAAA
79062394 TAAACTTGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 11 0.39
28 9 0.32
29 8 0.29
ACGTcount: A:0.68, C:0.02, G:0.22, T:0.08
Consensus pattern (27 bp):
GAAAAAAAGTGAAAAGAAAAGAAAGAT
Found at i:79063618 original size:28 final size:28
Alignment explanation
Indices: 79063587--79063641 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
79063577 TGTGTTTTAA
* *
79063587 TTTATTACATGTTATTAATG-TGTCTAAT
1 TTTATTACAAGAT-TTAATGATGTCTAAT
79063615 TTTATTACAAGATTTAATGATGTCTAA
1 TTTATTACAAGATTTAATGATGTCTAA
79063642 GTCCAGCCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (28 bp):
TTTATTACAAGATTTAATGATGTCTAAT
Found at i:79071397 original size:39 final size:40
Alignment explanation
Indices: 79071352--79071523 Score: 186
Period size: 40 Copynumber: 4.3 Consensus size: 40
79071342 GCTCCTCGTT
* * *
79071352 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
** *
79071392 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGTA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
79071431 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
79071471 CAAAGGCCTTCGGGGCTTAACCCGAAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCG-GATTTAGTAACTCGCA
*
79071511 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
79071524 ATCTCAGTCC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.29
40 77 0.68
41 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:79071452 original size:40 final size:40
Alignment explanation
Indices: 79071319--79071523 Score: 173
Period size: 40 Copynumber: 5.2 Consensus size: 40
79071309 AAATCACGTA
* * ** **
79071319 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATG
* * * * *
79071358 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATG
* * * *
79071397 CCTTCGGGACATAACCCGGATTTAACAACTCGTACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATG
* * *
79071437 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATG
* * * * *
79071477 CCTTCGGGGCTTAACCCGAAATTT-GTATCTCGCACAAAAG
1 CCTTCGGGACTTAACCCG-GATTTAGCAACTCGCACAAATG
79071517 CCTTCGG
1 CCTTCGG
79071524 ATCTCAGTCC
Statistics
Matches: 136, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 44 0.32
40 88 0.65
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATG
Found at i:79076370 original size:33 final size:34
Alignment explanation
Indices: 79076319--79076393 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
79076309 AGATTTAAAC
*
79076319 AAATTAATTACTAACACTTATTTAAGGTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
79076353 AAATTAATT-CTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
79076386 AATTTAAT
1 AAATTAAT
79076394 AAACTAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:79078174 original size:18 final size:17
Alignment explanation
Indices: 79078151--79078189 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
79078141 CTTTTTTTGC
79078151 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
79078169 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
79078187 TCT
1 TCT
79078190 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:79081654 original size:18 final size:18
Alignment explanation
Indices: 79081627--79081666 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
79081617 CAGGTGCGTT
*
79081627 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
79081645 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
79081663 TCCT
1 TCCT
79081667 TTTTTGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:79096387 original size:27 final size:27
Alignment explanation
Indices: 79096356--79096533 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
79096346 TAAATTGAAC
79096356 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79096383 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79096409 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79096437 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
79096465 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79096492 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79096519 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79096534 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79096470 original size:82 final size:81
Alignment explanation
Indices: 79096357--79096512 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
79096347 AAATTGAACA
* *
79096357 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
79096421 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79096438 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
79096503 TGCGAGTTGA
65 TGCGAATTGA
79096513 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79096524 original size:82 final size:81
Alignment explanation
Indices: 79096354--79096533 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
79096344 ATTAAATTGA
* *
79096354 ACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 ACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
79096419 TGTGCGAATTGACCAT
66 TGTGCGAATTGACCAT
* * ** *
79096435 GCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 ACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
79096499 AGTGTGCGAGTTGATTAT
64 AGTGTGCGAATTGACCAT
* *
79096517 ATAGCACTGAGTGTGCG
1 ACAGCACTAAGTGTGCG
79096534 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCAT
Found at i:79099277 original size:41 final size:41
Alignment explanation
Indices: 79099230--79099351 Score: 110
Period size: 41 Copynumber: 3.0 Consensus size: 41
79099220 GATTTCCAAG
79099230 ATTTGAAATCCTGATTTTCTTGATTCTTGAAATAGCTCAAA
1 ATTTGAAATCCTGATTTTCTTGATTCTTGAAATAGCTCAAA
*** * * * ** *
79099271 ATTTGAAAGATTCAGTTTCTTGGA--C--CAAGATTTC-CAAG
1 ATTTGAAATCCTGATTTTCTT-GATTCTTGAA-ATAGCTCAAA
79099309 ATTTGAAATCCTGATTTTCTTGATTCTTGAAATAGCTCAAA
1 ATTTGAAATCCTGATTTTCTTGATTCTTGAAATAGCTCAAA
79099350 AT
1 AT
79099352 AGCAAGATTG
Statistics
Matches: 56, Mismatches: 18, Indels: 14
0.64 0.20 0.16
Matches are distributed among these distances:
37 2 0.04
38 21 0.38
39 4 0.07
40 4 0.07
41 23 0.41
42 2 0.04
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (41 bp):
ATTTGAAATCCTGATTTTCTTGATTCTTGAAATAGCTCAAA
Found at i:79099329 original size:79 final size:79
Alignment explanation
Indices: 79099198--79099351 Score: 308
Period size: 79 Copynumber: 1.9 Consensus size: 79
79099188 CCTTTACTAC
79099198 AAGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCCTGATTTTCTTGATTCTTGAAAT
1 AAGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCCTGATTTTCTTGATTCTTGAAAT
79099263 AGCTCAAAATTTGA
66 AGCTCAAAATTTGA
79099277 AAGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCCTGATTTTCTTGATTCTTGAAAT
1 AAGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCCTGATTTTCTTGATTCTTGAAAT
79099342 AGCTCAAAAT
66 AGCTCAAAAT
79099352 AGCAAGATTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38
Consensus pattern (79 bp):
AAGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCCTGATTTTCTTGATTCTTGAAAT
AGCTCAAAATTTGA
Found at i:79101990 original size:18 final size:19
Alignment explanation
Indices: 79101969--79102005 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
79101959 AAAGGAAGAC
79101969 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
79101987 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
79102006 GACCAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:79108083 original size:33 final size:33
Alignment explanation
Indices: 79108034--79108108 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 33
79108024 AGATTTAAAC
79108034 AAATTAATTTCTAACACTTATTTAA-CGTGAACTA
1 AAATTAA-TTCTAACACTTATTTAAGC-TGAACTA
*
79108068 AAATTAATTCTAACACTTATTTGAGCTGAACTA
1 AAATTAATTCTAACACTTATTTAAGCTGAACTA
*
79108101 AATTTAAT
1 AAATTAAT
79108109 AAACTAACTC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 30 0.79
34 8 0.21
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (33 bp):
AAATTAATTCTAACACTTATTTAAGCTGAACTA
Found at i:79109865 original size:18 final size:17
Alignment explanation
Indices: 79109842--79109880 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
79109832 CTCCTTTTGC
79109842 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
79109860 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
79109878 TCT
1 TCT
79109881 GTCTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:79114148 original size:31 final size:31
Alignment explanation
Indices: 79114113--79114174 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
79114103 CTGATTCGAC
79114113 ATCATTCTTAGGCATCAAGAAACGTTCTTTG
1 ATCATTCTTAGGCATCAAGAAACGTTCTTTG
79114144 ATCATTCTTAGGCATCAAGAAACGTTCTTTG
1 ATCATTCTTAGGCATCAAGAAACGTTCTTTG
79114175 TTATAATTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (31 bp):
ATCATTCTTAGGCATCAAGAAACGTTCTTTG
Found at i:79117487 original size:33 final size:34
Alignment explanation
Indices: 79117444--79117518 Score: 100
Period size: 33 Copynumber: 2.2 Consensus size: 34
79117434 GAGTTGGTTT
*
79117444 ATTAAATTTAGTT-AAGCTCAAATAAGTGTTAG-A
1 ATTAATTTTAGTTCAA-CTCAAATAAGTGTTAGTA
* *
79117477 TTTAATTTTAGTTCAACTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAACTCAAATAAGTGTTAGTA
79117511 ATTAATTT
1 ATTAATTT
79117519 GTTTAAATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 26 0.72
34 10 0.28
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (34 bp):
ATTAATTTTAGTTCAACTCAAATAAGTGTTAGTA
Found at i:79120443 original size:8 final size:8
Alignment explanation
Indices: 79120430--79120466 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
79120420 TTCACGCCAC
79120430 TAAAACCA
1 TAAAACCA
79120438 TAAAACCA
1 TAAAACCA
79120446 TAAAACC-
1 TAAAACCA
*
79120453 T-AAACCC
1 TAAAACCA
79120460 TAAAACC
1 TAAAACC
79120467 CTTTCCTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 5 0.19
7 2 0.07
8 20 0.74
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.14
Consensus pattern (8 bp):
TAAAACCA
Found at i:79121510 original size:20 final size:21
Alignment explanation
Indices: 79121472--79121510 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
79121462 TTCATGGCTT
*
79121472 TAAATAATTTTTGGGTAAAAA
1 TAAATAATTTTAGGGTAAAAA
*
79121493 TAAAT-ATTTTAGGTTAAA
1 TAAATAATTTTAGGGTAAA
79121511 TTGGAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (21 bp):
TAAATAATTTTAGGGTAAAAA
Found at i:79121952 original size:20 final size:21
Alignment explanation
Indices: 79121927--79121972 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
79121917 TTTGAATTTG
79121927 TTCAAGCATTTTGATTCAAA-
1 TTCAAGCATTTTGATTCAAAC
79121947 TTCAAGCATTTTGATTCAAAC
1 TTCAAGCATTTTGATTCAAAC
79121968 TTCAA
1 TTCAA
79121973 AATTAATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (21 bp):
TTCAAGCATTTTGATTCAAAC
Found at i:79130391 original size:20 final size:20
Alignment explanation
Indices: 79130366--79130415 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
79130356 ATTGAGCGAG
*
79130366 AAAGAGAAAAAGAGAAAAAA
1 AAAGAGAAAAAGAAAAAAAA
*
79130386 AAAGAGTGAAAAGAAAAAAAA
1 AAAGAG-AAAAAGAAAAAAAA
79130407 AGAAGAGAA
1 A-AAGAGAA
79130416 TGATGAGAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (20 bp):
AAAGAGAAAAAGAAAAAAAA
Found at i:79130399 original size:21 final size:22
Alignment explanation
Indices: 79130373--79130413 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
79130363 GAGAAAGAGA
*
79130373 AAAAGAGAAAAAAA-AAGAGTG
1 AAAAGAAAAAAAAAGAAGAGTG
79130394 AAAAGAAAAAAAAAGAAGAG
1 AAAAGAAAAAAAAAGAAGAG
79130414 AATGATGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAAAAAAGAAGAGTG
Found at i:79136665 original size:25 final size:25
Alignment explanation
Indices: 79136632--79136707 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 25
79136622 AAATGATTTT
79136632 TAGA-TGTGAAAACAATAGAAACTA
1 TAGATTGTGAAAACAATAGAAACTA
* * *
79136656 TAGATTGTG-AAACTATAGGAGACAA
1 TAGATTGTGAAAACAATA-GAAACTA
* ** *
79136681 TAGATTATGAAAATGATATAAACTA
1 TAGATTGTGAAAACAATAGAAACTA
79136706 TA
1 TA
79136708 TTATAGAGGG
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
24 11 0.28
25 23 0.57
26 6 0.15
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.26
Consensus pattern (25 bp):
TAGATTGTGAAAACAATAGAAACTA
Found at i:79143341 original size:18 final size:20
Alignment explanation
Indices: 79143320--79143369 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
79143310 AAAGGAAGAC
79143320 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
79143338 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
79143358 AGAAAAAAGAGA
1 AG-AAAAAGAGA
79143370 TTGAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.74, C:0.02, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:79145085 original size:33 final size:34
Alignment explanation
Indices: 79145048--79145128 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 34
79145038 GAGTTAGTTT
*
79145048 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
* *
79145081 ATTAATTTTAGTTCAACTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
79145115 ATT-AATTT-GTTCAA
1 ATTAAATTTAGTTCAA
79145129 ATCTGGACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
32 6 0.14
33 33 0.77
34 4 0.09
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.42
Consensus pattern (34 bp):
ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
Found at i:79154342 original size:21 final size:22
Alignment explanation
Indices: 79154303--79154344 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
79154293 ATATTTCTTG
* *
79154303 CAAAAAAATTAGTAGAAAAAGT
1 CAAAAAAATTAGAAAAAAAAGT
79154325 CAAAAAAATT-GAAAAAAAAG
1 CAAAAAAATTAGAAAAAAAAG
79154345 AAATTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (22 bp):
CAAAAAAATTAGAAAAAAAAGT
Found at i:79156241 original size:13 final size:13
Alignment explanation
Indices: 79156223--79156252 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79156213 TCCAGCAACA
79156223 ATGAATTTATTTC
1 ATGAATTTATTTC
*
79156236 ATGAATTTATTTG
1 ATGAATTTATTTC
79156249 ATGA
1 ATGA
79156253 TGATCCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:79156410 original size:50 final size:50
Alignment explanation
Indices: 79156347--79156538 Score: 282
Period size: 50 Copynumber: 3.8 Consensus size: 50
79156337 ATTGGGGTAA
*
79156347 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
79156397 AGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
79156447 AGAGGTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
79156496 AGTA-CATCCCATGTAAGACCATGGCTGGGACATGG-ATTTGGCA
1 AG-AGC-TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
79156539 TGTTATTATC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
49 39 0.30
50 63 0.49
51 27 0.21
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGCTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:79159187 original size:37 final size:37
Alignment explanation
Indices: 79159137--79159215 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
79159127 TTATTACGAA
* *
79159137 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
79159174 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
79159211 GTCTT
1 GTCTT
79159216 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:79159512 original size:51 final size:51
Alignment explanation
Indices: 79159389--79159740 Score: 567
Period size: 51 Copynumber: 7.1 Consensus size: 51
79159379 GCCCTGTCAC
79159389 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
79159436 ATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
79159487 ATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
79159538 ATGTATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
79159589 ATGTATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC----
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* * *
79159636 ATATATACGCTTTCACATTGATCACATCGGCCATTAGGCCTTATCCCATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79159687 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79159738 ATA
1 ATA
79159741 CACTTTCACA
Statistics
Matches: 285, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
47 88 0.31
51 197 0.69
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (51 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:79159531 original size:98 final size:98
Alignment explanation
Indices: 79159334--79159752 Score: 630
Period size: 98 Copynumber: 4.3 Consensus size: 98
79159324 CCCTTCGGGA
* * * * * * * *
79159334 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC----ATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
*
79159395 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCAGCCATTAGGC
*
79159428 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
79159493 ACACTTTCACATTCATCACATCAGCCATTAGGC
66 ACACTTTCACATTCATCACATCAGCCATTAGGC
*
79159526 CTTATCACATATATGTATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATA--TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
79159591 GTATACACTTTCACATTCATCACATCAGCCATTAGGC
62 ATATACACTTTCACATTCATCACATCAGCCATTAGGC
* * *
79159628 CTTATCACATATATACGCTTTCACATTGATCACATCGGCCATTAGGCCTTATCCCATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
*
79159693 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCAGCCATTAGGC
79159726 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
79159753 TATTCAAATA
Statistics
Matches: 297, Mismatches: 20, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
94 46 0.15
98 153 0.52
100 6 0.02
102 92 0.31
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (98 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
ACACTTTCACATTCATCACATCAGCCATTAGGC
Found at i:79159640 original size:149 final size:147
Alignment explanation
Indices: 79159334--79159739 Score: 572
Period size: 149 Copynumber: 2.8 Consensus size: 147
79159324 CCCTTCGGGA
* * * * * * * *
79159334 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATA-TATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTATA
79159396 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATA-TATACACTCTCACATTCAT
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTATACACTCTCACATTCAT
*
79159458 CACATCGGCCATTAGGC
131 CACATCAGCCATTAGGC
*
79159475 CTTATCACATATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
79159540 GTATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATGTATACACTTTCAC
62 -TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-TATACACTCTCAC
79159605 ATTCATCACATCAGCCATTAGGC
125 ATTCATCACATCAGCCATTAGGC
* * *
79159628 CTTATCACATATATACGCTTTCACATTGATCACATCGGCCATTAGGCCTTATCCCATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-TAT
79159693 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
79159740 ACACTTTCAC
Statistics
Matches: 235, Mismatches: 18, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
141 8 0.03
145 38 0.16
147 3 0.01
149 141 0.60
151 3 0.01
153 42 0.18
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (147 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTATACACTCTCACATTCAT
CACATCAGCCATTAGGC
Found at i:79159758 original size:51 final size:47
Alignment explanation
Indices: 79159334--79159752 Score: 559
Period size: 51 Copynumber: 8.6 Consensus size: 47
79159324 CCCTTCGGGA
* * * * * *
79159334 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79159381 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79159428 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79159475 CTTATCACATATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79159526 CTTATCACATATATGTATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79159577 CTTATCACATATATGTATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79159628 CTTATCACATATATACGCTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79159675 CTTATCCCATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--C--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79159726 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
79159753 TATTCAAATA
Statistics
Matches: 342, Mismatches: 20, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
47 149 0.44
49 10 0.03
51 183 0.54
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79159758 original size:149 final size:146
Alignment explanation
Indices: 79159389--79159752 Score: 586
Period size: 149 Copynumber: 2.5 Consensus size: 146
79159379 GCCCTGTCAC
*
79159389 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
79159454 TCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCAGCC
66 TCATCACATCAGCCATTAGGCCTTATCAC--A-ATATATACACTTTCACATTCATCACATCAGCC
79159519 ATTAGGCCTTATCACATAT
128 ATTAGGCCTTATCACATAT
* *
79159538 ATGTATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATGTATACACTTTC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATA--TATACACTTTC
* * *
79159603 ACATTCATCACATCAGCCATTAGGCCTTATCAC-ATATATACGCTTTCACATTGATCACATCGGC
62 ACATTCATCACATCAGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCAGC
*
79159667 CATTAGGCCTTATCCCATAT
127 CATTAGGCCTTATCACATAT
79159687 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
79159752 T
66 T
79159753 TATTCAAATA
Statistics
Matches: 201, Mismatches: 10, Indels: 12
0.90 0.04 0.05
Matches are distributed among these distances:
145 16 0.08
147 3 0.01
149 137 0.68
151 3 0.01
153 42 0.21
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (146 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCAGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCAGCCATT
AGGCCTTATCACATAT
Found at i:79168123 original size:13 final size:13
Alignment explanation
Indices: 79168105--79168134 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79168095 TACAGCAACA
79168105 ATGAATTTATTTC
1 ATGAATTTATTTC
*
79168118 ATGAATTTATTTG
1 ATGAATTTATTTC
79168131 ATGA
1 ATGA
79168135 TGATCCATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:79168297 original size:50 final size:50
Alignment explanation
Indices: 79168229--79168471 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
79168219 ATTGGGGTAA
* *
79168229 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGGGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
79168279 AGAGGTCCCAAGTGAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
79168329 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
79168379 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
79168429 AGTACATCCCATCTAAGACCATGTCTGGGACATGCCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
79168472 TGTTATTATC
Statistics
Matches: 176, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 143 0.81
51 33 0.19
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:79197630 original size:20 final size:20
Alignment explanation
Indices: 79197605--79197649 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
79197595 GCTAATGGAA
* *
79197605 AGCTAAATTGAGCTCGAATG
1 AGCTAAACTGAGCTCAAATG
79197625 AGCTAAACTGAGCTCAAATG
1 AGCTAAACTGAGCTCAAATG
79197645 AGCTA
1 AGCTA
79197650 GTTGGAGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (20 bp):
AGCTAAACTGAGCTCAAATG
Found at i:79197657 original size:20 final size:19
Alignment explanation
Indices: 79197634--79197689 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
79197624 GAGCTAAACT
* *
79197634 GAGCTCAAATGAGCTAGTTG
1 GAGCTAAAATGAGCTAG-GG
*
79197654 GAGCTAAAACGAGCTAGGG
1 GAGCTAAAATGAGCTAGGG
*
79197673 GAGCTGAAATTGAGCTA
1 GAGCT-AAAATGAGCTA
79197690 AAATCAGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 6 0.20
20 24 0.80
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (19 bp):
GAGCTAAAATGAGCTAGGG
Found at i:79200743 original size:20 final size:19
Alignment explanation
Indices: 79200713--79200762 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
79200703 GCACTCCCAA
79200713 TCTCTTTTTTCTCTTTTTCAT
1 TCTC-TTTTTCT-TTTTTCAT
*
79200734 TCTCTTTTTCTTTTTTGAT
1 TCTCTTTTTCTTTTTTCAT
79200753 T-TCTTTTTCT
1 TCTCTTTTTCT
79200763 GTCTTCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 7 0.25
21 4 0.14
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (19 bp):
TCTCTTTTTCTTTTTTCAT
Found at i:79200747 original size:18 final size:17
Alignment explanation
Indices: 79200719--79200762 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
79200709 CCAATCTCTT
79200719 TTTTCTCTTTTTCATTCTC
1 TTTT-TCTTTTTCATT-TC
*
79200738 TTTTTCTTTTTTGATTTC
1 TTTTTC-TTTTTCATTTC
79200756 TTTTTCT
1 TTTTTCT
79200763 GTCTTCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTTCATTTC
Found at i:79209669 original size:145 final size:146
Alignment explanation
Indices: 79209405--79209694 Score: 573
Period size: 145 Copynumber: 2.0 Consensus size: 146
79209395 CAAAAAAAAG
79209405 AAAAGAAAGGATGTGTGTGATTGTTCCCCCCCATTGCCGTGAGTAAAGAAAAGAAAAAAAGAAAA
1 AAAAGAAAGGATGTGTGTGATTGTTCCCCCCCATTGCCGTGAGTAAAGAAAAGAAAAAAAGAAAA
79209470 TTTGTTCATCCTCTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAAGGAGTTCTTGCTT
66 TTTGTTCATCCTCTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAAGGAGTTCTTGCTT
79209535 CATGTTTGGTTTGGAT
131 CATGTTTGGTTTGGAT
79209551 AAAAGAAAGGATGTGTGTGATTG-TCCCCCCCATTGCCGTGAGTAAAGAAAAGAAAAAAAGAAAA
1 AAAAGAAAGGATGTGTGTGATTGTTCCCCCCCATTGCCGTGAGTAAAGAAAAGAAAAAAAGAAAA
79209615 TTTGTTCATCCTCTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAAGGAGTTCTTGCTT
66 TTTGTTCATCCTCTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAAGGAGTTCTTGCTT
79209680 CATGTTTGGTTTGGA
131 CATGTTTGGTTTGGA
79209695 AGAGGATTAG
Statistics
Matches: 144, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
145 121 0.84
146 23 0.16
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (146 bp):
AAAAGAAAGGATGTGTGTGATTGTTCCCCCCCATTGCCGTGAGTAAAGAAAAGAAAAAAAGAAAA
TTTGTTCATCCTCTTTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAAGGAGTTCTTGCTT
CATGTTTGGTTTGGAT
Found at i:79213370 original size:40 final size:40
Alignment explanation
Indices: 79213308--79213708 Score: 615
Period size: 40 Copynumber: 10.1 Consensus size: 40
79213298 AGGTCTCGAC
79213308 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
79213347 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79213387 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
79213427 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79213467 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
79213507 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79213547 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
79213587 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
79213627 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * * *
79213667 GTTATATCTGGGCTAGGTCTCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
79213707 GA
1 GA
79213709 CGTGTATTCG
Statistics
Matches: 333, Mismatches: 28, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 4 0.01
40 329 0.99
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:79219963 original size:47 final size:47
Alignment explanation
Indices: 79219894--79219986 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
79219884 CCTTCAGGAG
*
79219894 TTTTGGGTTTTCTTATGTTTTGTTCTATTTATGCTTTTGAGATGTTC
1 TTTTGGGTTTTCTTATGTTTTGTTATATTTATGCTTTTGAGATGTTC
79219941 TTTTGGGTTTTCTTATGTTTTGTTATATTTATGCTTTTGAGATGTT
1 TTTTGGGTTTTCTTATGTTTTGTTATATTTATGCTTTTGAGATGTT
79219987 TTCTTTCATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.12, C:0.06, G:0.19, T:0.62
Consensus pattern (47 bp):
TTTTGGGTTTTCTTATGTTTTGTTATATTTATGCTTTTGAGATGTTC
Found at i:79223727 original size:18 final size:18
Alignment explanation
Indices: 79223686--79223721 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79223676 CATTCCGAAG
* *
79223686 TATATATATATATACATA
1 TATATGTATATATACACA
79223704 TATATGTATATATACACA
1 TATATGTATATATACACA
79223722 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:79224235 original size:27 final size:27
Alignment explanation
Indices: 79224204--79224381 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
79224194 TAAATTGTAC
*
79224204 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79224231 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79224257 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79224285 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
79224313 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79224340 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79224367 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79224382 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79224322 original size:82 final size:81
Alignment explanation
Indices: 79224205--79224360 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
79224195 AAATTGTACA
* * *
79224205 GCACTAAGTGTGCGATTTGGCTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
79224269 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79224286 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
79224351 TGCGAGTTGA
65 TGCGAATTGA
79224361 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79224372 original size:82 final size:81
Alignment explanation
Indices: 79224201--79224381 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
79224191 GATTAAATTG
* * *
79224201 TACAGCACTAAGTGTGCGATTTGGCTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
79224266 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
79224282 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
79224346 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79224364 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79224382 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79230245 original size:21 final size:21
Alignment explanation
Indices: 79230221--79230262 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79230211 TCATCAGATC
*
79230221 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
79230242 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
79230263 AGGTGGGGGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:79232525 original size:30 final size:30
Alignment explanation
Indices: 79232480--79232540 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
79232470 ATTTAATACG
* *
79232480 AACTTTGGCAAAATTATATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
79232510 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
79232540 A
1 A
79232541 GCTCGGGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:79236390 original size:16 final size:16
Alignment explanation
Indices: 79236369--79236400 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79236359 CTACGAAGGT
79236369 TGAAAGGCTGAAAAGC
1 TGAAAGGCTGAAAAGC
*
79236385 TGAAAGGCTGACAAGC
1 TGAAAGGCTGAAAAGC
79236401 CAGAAAAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.16, G:0.31, T:0.12
Consensus pattern (16 bp):
TGAAAGGCTGAAAAGC
Found at i:79245258 original size:27 final size:27
Alignment explanation
Indices: 79245228--79245425 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
79245218 TACTGAAATG
* *
79245228 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
79245255 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
79245282 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
79245309 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
79245336 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
79245363 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
79245390 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
79245417 CCCTCGATT
1 CCCTCGATT
79245426 GTGAAATTAT
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:79245343 original size:81 final size:81
Alignment explanation
Indices: 79245228--79245425 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
79245218 TACTGAAATG
* *
79245228 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
* *
79245293 CAAAATTATCGTTTTA
66 CAAAATTACCATTTTA
* *
79245309 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
79245374 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
79245390 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
79245426 GTGAAATTAT
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 106 0.99
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
CAAAATTACCATTTTA
Found at i:79245447 original size:27 final size:27
Alignment explanation
Indices: 79245438--79245579 Score: 189
Period size: 27 Copynumber: 5.3 Consensus size: 27
79245428 GAAATTATTG
79245438 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
79245465 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
*
79245492 AAATATCCCC-AGTTTGTAAAATTACCG
1 AAATA-CCCCTAGTTTGTAAAATTACCA
* * *
79245519 AAATACCACTGGTTTGTGAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * *
79245546 AAATA-CCCTCAATTTCTAAAATTACCG
1 AAATACCCCT-AGTTTGTAAAATTACCA
79245573 AAATACC
1 AAATACC
79245580 ATTACTTTTT
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.06
27 89 0.89
28 5 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATACCCCTAGTTTGTAAAATTACCA
Found at i:79248113 original size:49 final size:49
Alignment explanation
Indices: 79248056--79248153 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
79248046 AATATATATA
*
79248056 TAAGGGTTAAGTACCTTGAATTTCTCTTTGATGTTCAAAATGATTAAAT
1 TAAGGGTTAACTACCTTGAATTTCTCTTTGATGTTCAAAATGATTAAAT
79248105 TAAGGGTTAACTACCTTGAATTTCTCTTTGATGTTCAAAATGATTAAAT
1 TAAGGGTTAACTACCTTGAATTTCTCTTTGATGTTCAAAATGATTAAAT
79248154 CAATTTATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (49 bp):
TAAGGGTTAACTACCTTGAATTTCTCTTTGATGTTCAAAATGATTAAAT
Found at i:79256198 original size:40 final size:40
Alignment explanation
Indices: 79256150--79256229 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
79256140 GGACTAAGAT
79256150 CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTC
* *
79256190 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTC
79256230 TTGTTGTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTC
Found at i:79259668 original size:22 final size:22
Alignment explanation
Indices: 79259643--79259687 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
79259633 GTGTTAAAAA
*
79259643 GATGTGAGGAAACAAACCTTGT
1 GATGTAAGGAAACAAACCTTGT
79259665 GATGTAAGGAAACAAACCTTGT
1 GATGTAAGGAAACAAACCTTGT
79259687 G
1 G
79259688 CTTAACTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (22 bp):
GATGTAAGGAAACAAACCTTGT
Found at i:79272896 original size:14 final size:14
Alignment explanation
Indices: 79272877--79272903 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79272867 ATATTTGACT
79272877 TGTTCTTAATTATG
1 TGTTCTTAATTATG
79272891 TGTTCTTAATTAT
1 TGTTCTTAATTAT
79272904 TTTTTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:79277222 original size:48 final size:47
Alignment explanation
Indices: 79277165--79277260 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 47
79277155 GAGATCAATA
**
79277165 GCAGGAATGAGGAGTATAAACTCCTCAAACCAG-CATGATCATTCAAC
1 GCAGGAATGAGGAGTATAAACTCAACAAACC-GCCATGATCATTCAAC
79277212 GNCAGGAATGAGGAGTATAAACTCAACAAACCGCCATGATCATTCAAC
1 G-CAGGAATGAGGAGTATAAACTCAACAAACCGCCATGATCATTCAAC
79277260 G
1 G
79277261 GAGAGGTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 2 0.04
48 43 0.96
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (47 bp):
GCAGGAATGAGGAGTATAAACTCAACAAACCGCCATGATCATTCAAC
Found at i:79278869 original size:16 final size:16
Alignment explanation
Indices: 79278848--79278882 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
79278838 CATGCTCTCA
79278848 CTCGCCACATACATTT
1 CTCGCCACATACATTT
79278864 CTCGCCACATACATTT
1 CTCGCCACATACATTT
79278880 CTC
1 CTC
79278883 TCCCTCGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.40, G:0.06, T:0.31
Consensus pattern (16 bp):
CTCGCCACATACATTT
Found at i:79284943 original size:63 final size:63
Alignment explanation
Indices: 79284869--79284988 Score: 231
Period size: 63 Copynumber: 1.9 Consensus size: 63
79284859 TGGTTGTTTC
*
79284869 CCCCCCCATTGCCGTGAGTTAAAGAAAAGAAGAGAGAAAATTTTGTTCATCCTTTTTGTTGTT
1 CCCCCCCATTGCCGTGAGTTAAAGAAAAGAAAAGAGAAAATTTTGTTCATCCTTTTTGTTGTT
79284932 CCCCCCCATTGCCGTGAGTTAAAGAAAAGAAAAGAGAAAATTTTGTTCATCCTTTTT
1 CCCCCCCATTGCCGTGAGTTAAAGAAAAGAAAAGAGAAAATTTTGTTCATCCTTTTT
79284989 CATCTTCATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (63 bp):
CCCCCCCATTGCCGTGAGTTAAAGAAAAGAAAAGAGAAAATTTTGTTCATCCTTTTTGTTGTT
Found at i:79285357 original size:59 final size:59
Alignment explanation
Indices: 79285279--79285396 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
79285269 GATGGTGGAT
79285279 TGATGATTCTTGAATCTTCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTG
1 TGATGATTCTTGAATCTTCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTG
79285338 TGATGATTCTTGAATCTTCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTG
1 TGATGATTCTTGAATCTTCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTG
79285397 CTAGATGGAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.20, C:0.12, G:0.22, T:0.46
Consensus pattern (59 bp):
TGATGATTCTTGAATCTTCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTG
Found at i:79286292 original size:79 final size:81
Alignment explanation
Indices: 79286152--79286336 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
79286142 TTAAATGATG
* *
79286152 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
79286216 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * *
79286231 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCC-GGACTAAGAT-CCGAAGGC
* *
79286292 AATTGTGTGAGTTACTATA
63 AATTGTGCGAGATACTATA
* *
79286311 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79286337 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 54 0.60
80 35 0.39
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:79286350 original size:40 final size:40
Alignment explanation
Indices: 79286153--79286336 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
79286143 TAAATGATGT
* * * *
79286153 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
79286193 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
79286233 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
79286271 TCCAGGTTAAGTCCCGAAGGCAATTGTGTGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79286312 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79286337 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:79286358 original size:79 final size:79
Alignment explanation
Indices: 79286205--79286369 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
79286195 GGACTAAGAT
* * **
79286205 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
79286270 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* * *
79286284 CCGAAGGCAATTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
79286347 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
79286363 CCGAAGG
1 CCGAAGG
79286370 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:79294107 original size:40 final size:40
Alignment explanation
Indices: 79294018--79294201 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
79294008 TTGAATGATG
* *
79294018 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
79294056 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
79294097 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79294136 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79294175 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79294202 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 54 0.44
40 61 0.49
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:79294153 original size:79 final size:81
Alignment explanation
Indices: 79294018--79294201 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
79294008 TTGAATGATG
*
79294018 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCAAT
79294081 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
79294096 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
79294157 AATTGTGCGAGTTACTATA
63 AATTGTGCGAGATACTATA
* *
79294176 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79294202 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 10 0.11
79 58 0.64
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:79294223 original size:79 final size:79
Alignment explanation
Indices: 79294070--79294234 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
79294060 GGACTAAGAT
* * ** *
79294070 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
79294135 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79294149 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
79294212 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79294228 CCGAAGG
1 CCGAAGG
79294235 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:79306020 original size:40 final size:40
Alignment explanation
Indices: 79305957--79306138 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
79305947 AACCCAAGTA
* * *
79305957 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
79305996 CCTTCGGGACATAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
79306036 CCTTCGGGACTTAGCCCTGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
79306076 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCATAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
79306116 CATTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79306139 CATTCGAATA
Statistics
Matches: 127, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 11 0.09
40 115 0.91
41 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:79309407 original size:46 final size:45
Alignment explanation
Indices: 79309314--79309408 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 45
79309304 AAAACTACAA
* *
79309314 ATCTGATCTTCGCTGAGAAGAGCGGAGCAAATCAAATTTCGGTAG
1 ATCTGATCTTCGCTGAGAAGAGCGGAGCAAATCAAATTTCAGCAG
* * * *
79309359 ATCTTATCTTCGCTGAGCAAGAGCGTAGCAGATCAAATTTTAGCAG
1 ATCTGATCTTCGCTGAG-AAGAGCGGAGCAAATCAAATTTCAGCAG
79309405 ATCT
1 ATCT
79309409 CATCCCGCTG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 16 0.37
46 27 0.63
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (45 bp):
ATCTGATCTTCGCTGAGAAGAGCGGAGCAAATCAAATTTCAGCAG
Found at i:79309562 original size:90 final size:88
Alignment explanation
Indices: 79309446--79309845 Score: 342
Period size: 88 Copynumber: 4.5 Consensus size: 88
79309436 TAAATTTCGG
* *
79309446 CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAATGAGCCTTAACCCCCTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAATGAGCCTTAACCCCCTAAGCA
*
79309511 GTAGGGTAATAGGCGAGAAAATGA
66 GTAGGGTAATAGGC-AGAAAATTA
* ** *
79309535 CAGATCTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGTGAGTCTTAA-CCCCTAAGC
1 CAGATC-TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAATGAGCCTTAACCCCCTAAGC
*
79309599 AGTAGGGTAACT-GACAGAAAA-TA
65 AGTAGGGTAA-TAGGCAGAAAATTA
* * * * **** * * ** *
79309622 CAGATCCTATTTCCCTAAGCAATAGTGGAGCGGATCGAAA-ATGGCAAGCTTTATCTTCCTGAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAAGATAATGAGCCTTAACCCCCTAAGC
* ** * * *
79309686 AGCAGTGG-AGCAAGCTGAAGATTA
65 AGTAG-GGTAATAGGCAGAAAATTA
* * * *
79309710 CAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAACTCCCTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAATGAGC---C-TTAACCCCCTA
* * **
79309775 AGCAGTAGGGTAAAAGGCTGGAGGATTA
62 AGCAGTAGGGTAATAGGC-AGAAAATTA
*
79309803 CAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 C-AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
79309846 GGCAAACCTT
Statistics
Matches: 250, Mismatches: 46, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
86 36 0.14
87 28 0.11
88 47 0.19
89 27 0.11
90 43 0.17
91 2 0.01
92 19 0.08
93 8 0.03
94 40 0.16
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (88 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAATGAGCCTTAACCCCCTAAGCA
GTAGGGTAATAGGCAGAAAATTA
Found at i:79309850 original size:182 final size:175
Alignment explanation
Indices: 79309534--79309859 Score: 411
Period size: 182 Copynumber: 1.8 Consensus size: 175
79309524 CGAGAAAATG
* * *
79309534 ACAGATCTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGTGAGTCTTAACCCCTAAGC
1 ACAGATCTTTATCTCCCTAAGCAACAGTGGAGCAGATCAAAGATGGAGAGGCTTAACCCCTAAGC
** * *
79309599 AGTAGGGTAACTGACAGAAAATACAGATCCTATTTCCCTAAGCAATAGTGGAGCGGATCGAAAAT
66 AGTAGGGTAAAAGACAGAAAATACAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAAAT
* *
79309664 GGCAAGCTTTATCTTCCTGAGCAGCAGTGGAGCAAGCTGAAGATT
131 GGCAAACCTTATCTTCCTGAGCAGCAGTGGAGCAAGCTGAAGATT
* *
79309709 ACAGATC-TTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGATGAGCAGGCTTTAACTCCC
1 ACAGATCTTTATCTCCCTAAGCAACAGTGGAGCAGATCAAAGATG--GAG-AGGC-TTAAC-CCC
* * * * * *
79309773 TAAGCAGTAGGGTAAAAGGCTGGAGGATTACAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
61 TAAGCAGTAGGGTAAAAGAC-AGA-AAATAC-AGATCCTATCTCCCTAAGCAATAGTGGAGCAGA
*
79309838 TCGAAGATGGCAAACCTTATCT
123 TCGAAAATGGCAAACCTTATCT
79309860 CTCTGAAGTT
Statistics
Matches: 125, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
174 34 0.27
175 7 0.06
176 2 0.02
177 3 0.02
178 5 0.04
179 20 0.16
180 2 0.02
181 4 0.03
182 48 0.38
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (175 bp):
ACAGATCTTTATCTCCCTAAGCAACAGTGGAGCAGATCAAAGATGGAGAGGCTTAACCCCTAAGC
AGTAGGGTAAAAGACAGAAAATACAGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAAAT
GGCAAACCTTATCTTCCTGAGCAGCAGTGGAGCAAGCTGAAGATT
Found at i:79309965 original size:132 final size:132
Alignment explanation
Indices: 79309805--79310685 Score: 1699
Period size: 132 Copynumber: 6.7 Consensus size: 132
79309795 GAGGATTACA
79309805 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
79309870 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
66 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
79309935 AC
131 AC
79309937 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
79310002 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
66 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
79310067 AC
131 AC
79310069 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
79310134 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
66 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
79310199 AC
131 AC
79310201 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
79310266 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
66 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
79310331 AC
131 AC
79310333 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
79310398 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
66 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
79310463 AC
131 AC
79310465 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
79310530 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
66 GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
79310595 AC
131 AC
* ** * *
79310597 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATACCAAACCTTGTTTCTCTGAAGTT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
* *
79310662 GCAGAGAGCAAGTTGAAGATACAA
66 GCAGAGAGCAGGTTGAAGTTACAA
79310686 ACCTTGTGTC
Statistics
Matches: 742, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 742 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (132 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAACCTTATCTCTCTGAAGTT
GCAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCAGAGCATATTGAAGATA
AC
Found at i:79321380 original size:27 final size:27
Alignment explanation
Indices: 79321349--79321402 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
79321339 ACCATTCCAG
*
79321349 GATGTTGTAGGGGATGACCCGCAAATA
1 GATGTTGTAGGGGATGACCCACAAATA
79321376 GATGTTGTAGGGGATGACCCACAAATA
1 GATGTTGTAGGGGATGACCCACAAATA
79321403 TATGCATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.22
Consensus pattern (27 bp):
GATGTTGTAGGGGATGACCCACAAATA
Found at i:79331804 original size:39 final size:40
Alignment explanation
Indices: 79331703--79331908 Score: 199
Period size: 40 Copynumber: 5.2 Consensus size: 40
79331693 TATTCGAATG
* * *
79331703 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
79331744 ATATCCGGACTAAGAT---TAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* * *
79331782 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGAGCGACTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
79331821 AAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
79331861 ATAACCGGGCTATGTCCCAAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
79331901 ATATCCGG
1 ATATCCGG
79331909 TTAAATTTCG
Statistics
Matches: 134, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 17 0.13
39 42 0.31
40 60 0.45
41 13 0.10
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:79331911 original size:79 final size:79
Alignment explanation
Indices: 79331761--79331912 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 79
79331751 GACTAAGATT
* * *
79331761 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGAGCGACTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAGCGACGTACTAAATC
*
79331826 TGGGTTAAGTCCCG
66 TCGGTTAAGTCCCG
* * *
79331840 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAGCGA-GTAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAGCGACGTA-CTAA
79331903 ATC-CGGTTAA
63 ATCTCGGTTAA
79331913 ATTTCGAAGG
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.60
80 23 0.37
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAGCGACGTACTAAATC
TCGGTTAAGTCCCG
Found at i:79332972 original size:195 final size:195
Alignment explanation
Indices: 79332640--79333029 Score: 780
Period size: 195 Copynumber: 2.0 Consensus size: 195
79332630 GGCAGCAGCA
79332640 GTGATGTGGATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGT
1 GTGATGTGGATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGT
79332705 AATCTAACCTTGATGAATCTATTTTCATAGGAGAGTAACGAAACGTTCATATGAACAGTATATTA
66 AATCTAACCTTGATGAATCTATTTTCATAGGAGAGTAACGAAACGTTCATATGAACAGTATATTA
79332770 TGAGATGTTAAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTAGATTCCCTGATTTGACTTTGG
131 TGAGATGTTAAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTAGATTCCCTGATTTGACTTTGG
79332835 GTGATGTGGATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGT
1 GTGATGTGGATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGT
79332900 AATCTAACCTTGATGAATCTATTTTCATAGGAGAGTAACGAAACGTTCATATGAACAGTATATTA
66 AATCTAACCTTGATGAATCTATTTTCATAGGAGAGTAACGAAACGTTCATATGAACAGTATATTA
79332965 TGAGATGTTAAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTAGATTCCCTGATTTGACTTTGG
131 TGAGATGTTAAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTAGATTCCCTGATTTGACTTTGG
79333030 AAATTCATTA
Statistics
Matches: 195, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
195 195 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (195 bp):
GTGATGTGGATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGT
AATCTAACCTTGATGAATCTATTTTCATAGGAGAGTAACGAAACGTTCATATGAACAGTATATTA
TGAGATGTTAAAGTTTTCGTGAGACAGGGCCAGAACGGTTTCTAGATTCCCTGATTTGACTTTGG
Found at i:79341521 original size:47 final size:47
Alignment explanation
Indices: 79341458--79341761 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
79341448 CCCTTCGGGA
* * *
79341458 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
79341505 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
79341552 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
79341599 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
79341646 CCTATCACATATATACACTTTTACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
79341693 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
79341742 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
79341762 GTACATCAAT
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 192 0.81
49 44 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:79344299 original size:40 final size:40
Alignment explanation
Indices: 79344147--79344340 Score: 196
Period size: 40 Copynumber: 4.8 Consensus size: 40
79344137 TTCGAATGAT
* * * *
79344147 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* * * *
79344188 ATTCGGACTAAGAT-CAGAAGGCTTTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
79344228 TTCCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
79344267 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * *
79344308 A-CTGGGCTATGCCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
79344341 AGCTATATCT
Statistics
Matches: 127, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 32 0.25
40 67 0.53
41 27 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:79344355 original size:79 final size:79
Alignment explanation
Indices: 79344204--79344366 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
79344194 ACTAAGATCA
* *
79344204 GAAGGCTTTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAAT
*
79344269 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * *
79344283 GAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGCCCCGAAGGCATTTGAGCGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTA-CTA
* * *
79344346 TAT-CTGGTTAAATTCC
63 AATCCGGGTTAAATCCC
79344362 GAAGG
1 GAAGG
79344367 TATGTGATTC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:79353912 original size:48 final size:48
Alignment explanation
Indices: 79353746--79353912 Score: 153
Period size: 48 Copynumber: 3.5 Consensus size: 48
79353736 AACTACTCAC
* * * * *
79353746 ATCATGGCCTGAAGCCAACTCAAAATATCTCGCG-CCCAAAGTGCTAAT
1 ATCATGGCCCGAAGCCAAATCAAAGTAACTCG-GACCCAAAGTGCAAAT
* * * * *
79353794 ATCATGGCCCGTAGCCAAATC--AGTGAAGTTCGCACCC-AAGATACATAT
1 ATCATGGCCCGAAGCCAAATCAAAGT-AA-CTCGGACCCAAAG-TGCAAAT
* **
79353842 ATCATGACCCGAAGCCAAATCAAAGTAACTCGGACCCAAAGTGCCGAT
1 ATCATGGCCCGAAGCCAAATCAAAGTAACTCGGACCCAAAGTGCAAAT
79353890 ATCATGGCCCGAAGCCAAATCAA
1 ATCATGGCCCGAAGCCAAATCAA
79353913 TATATCCCCT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
46 2 0.02
47 4 0.04
48 80 0.85
49 5 0.05
50 3 0.03
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (48 bp):
ATCATGGCCCGAAGCCAAATCAAAGTAACTCGGACCCAAAGTGCAAAT
Found at i:79360505 original size:40 final size:40
Alignment explanation
Indices: 79360303--79360506 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
79360293 CGGATAATAA
* *
79360303 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
79360343 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
79360383 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATGA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * * *
79360423 CCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79360463 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79360503 CCGG
1 CCGG
79360507 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 142 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79368390 original size:79 final size:81
Alignment explanation
Indices: 79368254--79368438 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
79368244 TTGAATGATG
*
79368254 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
79368318 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
79368333 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
79368395 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
79368413 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79368439 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:79368452 original size:40 final size:40
Alignment explanation
Indices: 79368255--79368438 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
79368245 TGAATGATGT
* * * *
79368255 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
79368295 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
79368335 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79368373 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79368414 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79368439 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:79368460 original size:79 final size:79
Alignment explanation
Indices: 79368307--79368471 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
79368297 GGACTAAGAT
* **
79368307 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
79368372 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79368386 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
79368449 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79368465 CCGAAGG
1 CCGAAGG
79368472 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79370947 original size:43 final size:43
Alignment explanation
Indices: 79370778--79370948 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 43
79370768 CATAGGATTT
* * *
79370778 TCGATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
* * * *
79370821 TCGACATGTGATTACATGTAAGACCATGTCTGGGACATCGACA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
* * *
79370864 TCG-TATTTGATT-CGTGTAAGACC-CTGTCTGGGACAGTGGCA
1 TCGATATGTGATTACATGTAAGACCAC-GTCTGGGACATTGGCA
* **
79370905 TCGATATGTGATTACATGTAAGACCACATCTAAGACATTGGCA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
79370948 T
1 T
79370949 TGTACGATAT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 26 0.25
42 15 0.14
43 62 0.60
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
Found at i:79371126 original size:16 final size:16
Alignment explanation
Indices: 79371102--79371132 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79371092 TGGTTATTTG
*
79371102 ATATGTGATACAAATT
1 ATATATGATACAAATT
79371118 ATATATGATACAAAT
1 ATATATGATACAAAT
79371133 GAAAATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (16 bp):
ATATATGATACAAATT
Found at i:79373901 original size:18 final size:17
Alignment explanation
Indices: 79373878--79373912 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
79373868 TAATAATTCT
79373878 AAAAAAATTCAACTAAAA
1 AAAAAAATTCAAC-AAAA
*
79373896 AAAAAACTTCAACAAAA
1 AAAAAAATTCAACAAAA
79373913 TATAAAGTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAAATTCAACAAAA
Found at i:79380618 original size:14 final size:15
Alignment explanation
Indices: 79380584--79380619 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
79380574 TTTTGCCAAT
79380584 AAAAT-ATTTTTTAG
1 AAAATAATTTTTTAG
79380598 AAAATAATTTTTTA-
1 AAAATAATTTTTTAG
79380612 AAAATAAT
1 AAAATAAT
79380620 ATGATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
AAAATAATTTTTTAG
Found at i:79382719 original size:55 final size:53
Alignment explanation
Indices: 79382657--79382911 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
79382647 ATTAGAGTTT
79382657 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGCTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAAT-GGTAA-G-TTCATAAGGC
* ** * **
79382712 AAGGATACCATGTAAGACCATGTCAATTCATGGCATTTTTAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT-C-ATAAGGC
* * *
79382767 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
* * *
79382820 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCAT-AAGGC
** * * *
79382869 AAGGATATTACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAG
79382912 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
51 1 0.01
52 8 0.05
53 43 0.25
54 4 0.02
55 72 0.43
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
Found at i:79382863 original size:108 final size:110
Alignment explanation
Indices: 79382664--79382864 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
79382654 TTTAAGGATA
79382664 CCATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGA
** * **
79382729 CCATGTCAATTCATGGCATTTTTAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGGTAAGTTACTATAAGGCAAAGGTC
* *
79382774 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGCTTC-TAAGGCAAGGATACCATGTAAG
*
79382836 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGGTAAGTT
79382865 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 6 0.07
110 27 0.33
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGGTAAGTTACTATAAGGCAAAGGTC
Done.