Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 241 of 310
Found at i:79383124 original size:16 final size:16
Alignment explanation
Indices: 79383103--79383133 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79383093 ATAAATTTGA
79383103 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79383119 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79383134 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79387342 original size:26 final size:27
Alignment explanation
Indices: 79387313--79387366 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
79387303 AGAAGTGCCG
*
79387313 AATATTCACTGA-TCACAAAAG-TTTGA
1 AATATTCAATGACTCA-AAAAGATTTGA
*
79387339 AATATTTAATGACTCAAAAAGATTTGA
1 AATATTCAATGACTCAAAAAGATTTGA
79387366 A
1 A
79387367 CTTGAGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (27 bp):
AATATTCAATGACTCAAAAAGATTTGA
Found at i:79390317 original size:55 final size:53
Alignment explanation
Indices: 79390230--79390421 Score: 198
Period size: 53 Copynumber: 3.7 Consensus size: 53
79390220 ATTAGGGTTT
*
79390230 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGACAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * *
79390285 AAAGG-TCCCATGTAAGACCATGACAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCATTGATAAGTTCATAAGGC
*** * *
79390338 AAGGATACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGACAAGACATGGCATTGATAAGTTCAT-AAGGC
* *
79390387 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGACAAGACATGGCA
79390422 ATGGTAAGGT
Statistics
Matches: 117, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
49 30 0.26
51 1 0.01
52 6 0.05
53 40 0.34
54 1 0.01
55 35 0.30
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:79390419 original size:49 final size:50
Alignment explanation
Indices: 79390230--79390429 Score: 163
Period size: 49 Copynumber: 3.9 Consensus size: 50
79390220 ATTAGGGTTT
* * * *
79390230 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTT-C-A-AA-G
* * * * *
79390284 CAAAGG-TCCCATGTAAGACCATGACAAGGCATGGCATTGGTGAGTTCATAAGG
1 --AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTCA-AA-G
* ***
79390337 CAAGGATACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTTTC-AA-
1 -AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAG-TTCAAAG
*
79390387 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAG
79390430 GTACCCGTGT
Statistics
Matches: 124, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
49 38 0.31
52 6 0.05
53 37 0.30
54 4 0.03
55 35 0.28
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (50 bp):
AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTCAAAG
Found at i:79390641 original size:15 final size:16
Alignment explanation
Indices: 79390621--79390650 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
79390611 ATAAATTTGA
79390621 TTAAGTAAGT-AGTAT
1 TTAAGTAAGTGAGTAT
79390636 TTAAGTAAGTGAGTA
1 TTAAGTAAGTGAGTA
79390651 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (16 bp):
TTAAGTAAGTGAGTAT
Found at i:79403963 original size:43 final size:43
Alignment explanation
Indices: 79403902--79403986 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
79403892 CACCTAGGTG
* *
79403902 AATGTTGGGGCAAGTCTACTAGCAGGGCCTGTTACGGGTGCGT
1 AATGTTGGGGCAAGTCTACTAACAGGGCCTGTTACGGATGCGT
*
79403945 AATGTTTGGGCAAGTCTACTAACAGGGCCTGTTACGGATGCG
1 AATGTTGGGGCAAGTCTACTAACAGGGCCTGTTACGGATGCG
79403987 GTTCGAAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (43 bp):
AATGTTGGGGCAAGTCTACTAACAGGGCCTGTTACGGATGCGT
Found at i:79409349 original size:12 final size:13
Alignment explanation
Indices: 79409332--79409366 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
79409322 GCAACCTAAG
79409332 GGGAAGGGGAA-A
1 GGGAAGGGGAAGA
79409344 GGGAAGGGGAAGA
1 GGGAAGGGGAAGA
*
79409357 GGAAAGGGGA
1 GGGAAGGGGA
79409367 GAAAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (13 bp):
GGGAAGGGGAAGA
Found at i:79409352 original size:18 final size:18
Alignment explanation
Indices: 79409329--79409364 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79409319 TTTGCAACCT
*
79409329 AAGGGGAAGGGGAAAGGG
1 AAGGGGAAGAGGAAAGGG
79409347 AAGGGGAAGAGGAAAGGG
1 AAGGGGAAGAGGAAAGGG
79409365 GAGAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (18 bp):
AAGGGGAAGAGGAAAGGG
Found at i:79410759 original size:13 final size:13
Alignment explanation
Indices: 79410741--79410773 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
79410731 GCACAAGGAC
79410741 GTGTGACACAACT
1 GTGTGACACAACT
79410754 GTGTGACACAACT
1 GTGTGACACAACT
79410767 GTGTGAC
1 GTGTGAC
79410774 CCTACTCAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (13 bp):
GTGTGACACAACT
Found at i:79412501 original size:11 final size:11
Alignment explanation
Indices: 79412487--79412536 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
79412477 AGATAAATAT
79412487 TATTTTATTAA
1 TATTTTATTAA
*
79412498 TATTTTAATGAGA
1 TATTTT-ATTA-A
79412511 TA-TTTATTAA
1 TATTTTATTAA
*
79412521 TATTTTATTAT
1 TATTTTATTAA
79412532 TATTT
1 TATTT
79412537 ATTTAGTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 3 0.09
11 21 0.64
12 6 0.18
13 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:79414304 original size:32 final size:32
Alignment explanation
Indices: 79414208--79414320 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 32
79414198 TACCTAAAAG
* *
79414208 GTACAACTGGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACCCT-TGTGT
* * *
79414241 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
79414274 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
79414306 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
79414321 TGGTAGCTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
32 29 0.43
33 38 0.56
34 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (32 bp):
GTACAACTTGAAAAGGAAATGTACCCTTGTGT
Found at i:79414350 original size:31 final size:31
Alignment explanation
Indices: 79414313--79414428 Score: 173
Period size: 31 Copynumber: 3.7 Consensus size: 31
79414303 TGTGTACAAT
79414313 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
79414344 GTGAAAAGTAGTAGCTTCGGCTACCTGA-CTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATC-A
*
79414375 GTGAAAAGTGGTAGC-TCTAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
*
79414406 GTGAATAGTGGTAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
79414429 AAAGTGACAA
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
30 3 0.04
31 70 0.92
32 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:79414382 original size:62 final size:64
Alignment explanation
Indices: 79414308--79414462 Score: 201
Period size: 62 Copynumber: 2.5 Consensus size: 64
79414298 CCTTGTGTGT
* *
79414308 ACAATGTGAAAAGTGGTAGCTTC-GGCTACCTGATCAGTGAAAAGTAGTAGCTTCGGCT-ACCTG
1 ACAA-GTGAAAAGTGGTAGCTTCTAGCTACCTGATCAGTGAAAAGTAGTAGCTTCGGCTAAACTG
* * * *
79414371 ACTAGTGAAAAGTGGTAGC-TCTAGCTACCTGATCAGTGAATAGTGGTAGCTTCGGCTAAAAGTG
1 ACAAGTGAAAAGTGGTAGCTTCTAGCTACCTGATCAGTGAAAAGTAGTAGCTTCGGCT-AAACTG
*
79414435 ACAAGTGATAAGTGGTAGCTT-TAGCTAC
1 ACAAGTGAAAAGTGGTAGCTTCTAGCTAC
79414463 ACTTATCTAA
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
61 2 0.03
62 47 0.59
63 3 0.04
64 27 0.34
65 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (64 bp):
ACAAGTGAAAAGTGGTAGCTTCTAGCTACCTGATCAGTGAAAAGTAGTAGCTTCGGCTAAACTG
Found at i:79414550 original size:27 final size:27
Alignment explanation
Indices: 79414519--79414583 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
79414509 TAGTTGAACT
*
79414519 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
79414546 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
79414573 ATAGCAAAGTG
1 ATGGCAAAGTG
79414584 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:79435767 original size:9 final size:9
Alignment explanation
Indices: 79435755--79435780 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
79435745 ATTGTTATCA
79435755 TTATTATTT
1 TTATTATTT
79435764 TTATTATTT
1 TTATTATTT
79435773 TTATTATT
1 TTATTATT
79435781 ATTTTTGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTATTATTT
Found at i:79441878 original size:41 final size:41
Alignment explanation
Indices: 79441821--79441904 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
79441811 CCACCCGCTG
* *
79441821 TAAAGTGTATACACTGCCGGGGTTACTAATTGATAATAGAT
1 TAAAGGGTATACACTGCCGGGGGTACTAATTGATAATAGAT
79441862 TAAAGGGTATACACTGCCGGGGGTACTAATTGATAATAGAT
1 TAAAGGGTATACACTGCCGGGGGTACTAATTGATAATAGAT
79441903 TA
1 TA
79441905 GCCCTAAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (41 bp):
TAAAGGGTATACACTGCCGGGGGTACTAATTGATAATAGAT
Found at i:79447634 original size:45 final size:45
Alignment explanation
Indices: 79447520--79447773 Score: 156
Period size: 45 Copynumber: 5.6 Consensus size: 45
79447510 AATTATGGTG
* * ** **
79447520 AATCTTATCTCCCTGAAGTTGCAATGAAGCAGATTGAAGCCA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGAAGCAGCCTGAAGAAAGCA
* * * **
79447564 AACCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTGAAGAAAGCA
1 AATCTTATTTCCCTGAAGTTGCAGTGAAGCAGCCTGAAGAAAGCA
* * * * *
79447609 AGTCTTATATT-CCTGAAGTTACAGTGGAGTAGCCTGAAGATAGCA
1 AATCTTAT-TTCCCTGAAGTTGCAGTGAAGCAGCCTGAAGAAAGCA
*** * *
79447654 AATCTTATTTCCCTGAAGTTGCAGTGGAA-CATATTAAAGCTACAAACTA
1 AATCTTATTTCCCTGAAGTTGCAGT-GAAGCAGCCTGAAG--A-AAGC-A
* * * * * *
79447703 AATCTTATTTTCCTGAAGTTGCAATGGAGTAGACTAAAGATAA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGAAGCAGCCTGAAGA-AAGCA
* *
79447748 AATCTTATTTCCCTAAAGTTGAAGTG
1 AATCTTATTTCCCTGAAGTTGCAGTG
79447774 GAATAGATTA
Statistics
Matches: 164, Mismatches: 37, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
44 38 0.23
45 83 0.51
46 4 0.02
47 4 0.02
48 4 0.02
49 31 0.19
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (45 bp):
AATCTTATTTCCCTGAAGTTGCAGTGAAGCAGCCTGAAGAAAGCA
Found at i:79447718 original size:49 final size:48
Alignment explanation
Indices: 79447652--79447841 Score: 233
Period size: 49 Copynumber: 4.0 Consensus size: 48
79447642 CTGAAGATAG
*
79447652 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACATATTAAAGCTACAAA
1 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAA
* * ** * *
79447700 CTAAATCTTATTTTCCTGAAGTTGCAATGGAGTAGACTAAAG--A-TAA
1 C-AAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAA
* * *
79447746 CAAATCTTATTTCCCTAAAGTTGAAGTGGAATAGATTAAAGCTACAAA
1 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAA
* *
79447794 CCAAATCTTATTTCCCTGAAGTCGCAGTGGAGCAGATTAAAGCTACAA
1 -CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
79447842 GTCTATCCAT
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
45 34 0.29
46 3 0.03
47 2 0.02
48 3 0.03
49 76 0.64
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (48 bp):
CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAA
Found at i:79447731 original size:94 final size:94
Alignment explanation
Indices: 79447611--79447835 Score: 315
Period size: 94 Copynumber: 2.4 Consensus size: 94
79447601 AGAAAGCAAG
* * * * * * *
79447611 TCTTATATTCCTGAAGTTACAGTGGAGTAGCCTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
1 TCTTATTTTCCTGAAGTTGCAGTGGAGTAGACTAAAGATAACAAATCTTATTTCCCTAAAGTTGA
* *
79447676 AGTGGAACATATTAAAGCTACAAACTAAA
66 AGTGGAACAGATTAAAGCTACAAACCAAA
*
79447705 TCTTATTTTCCTGAAGTTGCAATGGAGTAGACTAAAGATAACAAATCTTATTTCCCTAAAGTTGA
1 TCTTATTTTCCTGAAGTTGCAGTGGAGTAGACTAAAGATAACAAATCTTATTTCCCTAAAGTTGA
*
79447770 AGTGGAATAGATTAAAGCTACAAACCAAA
66 AGTGGAACAGATTAAAGCTACAAACCAAA
* * * *
79447799 TCTTATTTCCCTGAAGTCGCAGTGGAGCAGATTAAAG
1 TCTTATTTTCCTGAAGTTGCAGTGGAGTAGACTAAAG
79447836 CTACAAGTCT
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 115 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (94 bp):
TCTTATTTTCCTGAAGTTGCAGTGGAGTAGACTAAAGATAACAAATCTTATTTCCCTAAAGTTGA
AGTGGAACAGATTAAAGCTACAAACCAAA
Found at i:79447914 original size:44 final size:43
Alignment explanation
Indices: 79447818--79447918 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 43
79447808 CCTGAAGTCG
* * *
79447818 CAGTGGAGCAGATTAAAGCTACAAGTCTATCCATCTGAAGTTG
1 CAGTGGAGTAGATTAAAGCTACAAGTCTATCCATCTGAAATTA
*
79447861 CAGTGGAGTAGATTAAAGCTAGAAGTCTAGTCTC-TCTGAAATTA
1 CAGTGGAGTAGATTAAAGCTACAAGTCTA-TC-CATCTGAAATTA
79447905 CAGTGGAGTAGATT
1 CAGTGGAGTAGATT
79447919 GAAACACTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
43 27 0.52
44 24 0.46
45 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (43 bp):
CAGTGGAGTAGATTAAAGCTACAAGTCTATCCATCTGAAATTA
Found at i:79454538 original size:51 final size:50
Alignment explanation
Indices: 79454461--79454643 Score: 199
Period size: 51 Copynumber: 3.6 Consensus size: 50
79454451 CGGATACCCG
* *
79454461 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCAAAGCTACCTTCTTCACAAA
* * *
79454512 GTGGCCTTCACATAGTACCACACTTGTGACCAAAACTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-TCAAAGCTA-CCTTCTTCACAAA
* * * * * *
79454564 GTGTCCTTCACATAGTACTC-CACTTGTGACCAAGCTATC-TCTACTCAAA
1 GTGGCCTTCACATAGTAC-CACACTTGTGTCAAAGCTACCTTCTTCACAAA
* *
79454613 GTAGCCTTCACATAGTACCACACTTGAGTCA
1 GTGGCCTTCACATAGTACCACACTTGTGTCA
79454644 CTAGTGACAT
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 32 0.29
50 1 0.01
51 38 0.35
52 37 0.34
53 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
Found at i:79454572 original size:52 final size:50
Alignment explanation
Indices: 79454464--79454638 Score: 205
Period size: 52 Copynumber: 3.5 Consensus size: 50
79454454 ATACCCGGTG
* * * *
79454464 GCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAAAGT
1 GCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAAGT
*
79454514 GGCCTTCACATAGTACCACACTTGTGACCAAAACTATCTTTCTTCACAAAGT
1 -GCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAAGT
* *
79454566 GTCCTTCACATAGTACTC-CACTTGTGACC-AAGCTATC-TCTACTCAAAGT
1 G-CCTTCACATAGTAC-CACACTTGTGACCAAAGCTATCTTCTTCACAAAGT
79454615 AGCCTTCACATAGTACCACACTTG
1 -GCCTTCACATAGTACCACACTTG
79454639 AGTCACTAGT
Statistics
Matches: 110, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
48 1 0.01
49 30 0.27
50 1 0.01
51 38 0.35
52 39 0.35
53 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.28
Consensus pattern (50 bp):
GCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGT
Found at i:79462429 original size:49 final size:49
Alignment explanation
Indices: 79462373--79462540 Score: 205
Period size: 49 Copynumber: 3.4 Consensus size: 49
79462363 GTATGCATAC
* *
79462373 TAGCCTGCACTTAGCACTACACATGCGGCCAATTATTC-GGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGGGTACACGTAG
* * * * *
79462422 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGGGTACACGTAG
* *
79462473 TAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACGTAG
79462522 TAG-CTAGCACTTAGTACTA
1 TAGCCT-GCACTTAGTACTA
79462541 TACACGTGAC
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
48 2 0.02
49 53 0.53
50 8 0.08
51 37 0.37
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACGTAG
Found at i:79462497 original size:100 final size:100
Alignment explanation
Indices: 79462367--79462549 Score: 289
Period size: 100 Copynumber: 1.8 Consensus size: 100
79462357 TATCTAGTAT
* *
79462367 GCATACTAGCCTGCACTTAGCACTACACATGCGGCCAATTAT-TCGGTACACGTAGTAGCCT-GC
1 GCATACTAGCCTACACTTAGCACTACACATGCGACCAATTATCT-GGTACACGTAGTAG-CTAGC
79462430 ACTTAGTACTACACACGTGATCGAAGTTATCGGGTAC
64 ACTTAGTACTACACACGTGATCGAAGTTATCGGGTAC
* *
79462467 GCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCTAGCAC
1 GCATACTAGCCTACACTTAGCACTACACATGCGACCAATTATCTGGTACACGTAGTAGCTAGCAC
*
79462532 TTAGTACTATACACGTGA
66 TTAGTACTACACACGTGA
79462550 CCTTACAATA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
99 2 0.03
100 73 0.96
101 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GCATACTAGCCTACACTTAGCACTACACATGCGACCAATTATCTGGTACACGTAGTAGCTAGCAC
TTAGTACTACACACGTGATCGAAGTTATCGGGTAC
Found at i:79462708 original size:51 final size:49
Alignment explanation
Indices: 79462644--79462766 Score: 156
Period size: 49 Copynumber: 2.5 Consensus size: 49
79462634 CATAGTCCTT
* * * *
79462644 CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTG
1 CACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTA
* * * *
79462695 CACTTACTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTA
1 CACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTA
79462744 CACTTAGTACTACACACGTGACC
1 CACTTAGTACTACACACGTGACC
79462767 TCACAATAGA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.66
50 3 0.05
51 18 0.30
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
CACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTA
Found at i:79462800 original size:215 final size:215
Alignment explanation
Indices: 79462429--79462858 Score: 772
Period size: 215 Copynumber: 2.0 Consensus size: 215
79462419 TAGTAGCCTG
*
79462429 CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACA
1 CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTACTACTACA
* * *
79462494 CATGCGACCAATTATCTGGTACACGTAGTAGCTAGCACTTAGTACTATACACGTGACCTTACAAT
66 CATGCGACCAATTATCCGGTACACGTAGTAGCTAGCACTTAGTACTACACACGTGACCTCACAAT
*
79462559 AGATCATTCATATTGTTTCTATTCCGAAGGCTCAACCGGGAAATTCCTCAATTTCCAACATGTTA
131 AGATCATTCATATCGTTTCTATTCCGAAGGCTCAACCGGGAAATTCCTCAATTTCCAACATGTTA
79462624 CAAATTTATTCATAGTCCTT
196 CAAATTTATTCATAGTCCTT
*
79462644 CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACTTACTACTACA
1 CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTACTACTACA
79462709 CATGCGACCAATTATCCGGTACACGTAGTAGCCTA-CACTTAGTACTACACACGTGACCTCACAA
66 CATGCGACCAATTATCCGGTACACGTAGTAG-CTAGCACTTAGTACTACACACGTGACCTCACAA
* *
79462773 TAGATCATTCGTATCGTTTCTATTCCGAAGGCTCAACCGGGAAATTCCTCACTTTCCAACATGTT
130 TAGATCATTCATATCGTTTCTATTCCGAAGGCTCAACCGGGAAATTCCTCAATTTCCAACATGTT
79462838 ACAAATTTATTCATAGTCCTT
195 ACAAATTTATTCATAGTCCTT
79462859 TTTCAATTTG
Statistics
Matches: 206, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
215 203 0.99
216 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (215 bp):
CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACTTACTACTACA
CATGCGACCAATTATCCGGTACACGTAGTAGCTAGCACTTAGTACTACACACGTGACCTCACAAT
AGATCATTCATATCGTTTCTATTCCGAAGGCTCAACCGGGAAATTCCTCAATTTCCAACATGTTA
CAAATTTATTCATAGTCCTT
Found at i:79472709 original size:29 final size:29
Alignment explanation
Indices: 79472676--79472732 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
79472666 GCATGAATAC
* * *
79472676 AAGGTGATTTGGGCCTAGTGGGCCATATA
1 AAGGTGATTTGGGCATAATGGACCATATA
*
79472705 AAGGTGATTTTGGCATAATGGACCATAT
1 AAGGTGATTTGGGCATAATGGACCATAT
79472733 GAATATGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (29 bp):
AAGGTGATTTGGGCATAATGGACCATATA
Found at i:79472754 original size:29 final size:29
Alignment explanation
Indices: 79472722--79472819 Score: 121
Period size: 29 Copynumber: 3.4 Consensus size: 29
79472712 TTTTGGCATA
*
79472722 ATGGACCATATGAATATGAATTGGGCCTG
1 ATGGGCCATATGAATATGAATTGGGCCTG
79472751 ATGGGCCGA-ATGAATATGAATTGGGCCTG
1 ATGGGCC-ATATGAATATGAATTGGGCCTG
* **
79472780 ATGGGCCACATG-A-ATGAGATTGGGCCAA
1 ATGGGCCATATGAATATGA-ATTGGGCCTG
79472808 ATGGGCCATATG
1 ATGGGCCATATG
79472820 CATTTATGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
27 4 0.06
28 21 0.34
29 36 0.58
30 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (29 bp):
ATGGGCCATATGAATATGAATTGGGCCTG
Found at i:79475719 original size:16 final size:16
Alignment explanation
Indices: 79475698--79475729 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79475688 GTTGTAACGC
*
79475698 CCCAAAAATCTTGAAA
1 CCCAAAAATCCTGAAA
79475714 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
79475730 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:79476988 original size:16 final size:16
Alignment explanation
Indices: 79476966--79477010 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
79476956 CGACAAAAAT
79476966 CGAAAAGCCGAAATGC
1 CGAAAAGCCGAAATGC
* *
79476982 TGAAAAGCAGAAATGC
1 CGAAAAGCCGAAATGC
*
79476998 CGAAAAGTCGAAA
1 CGAAAAGCCGAAA
79477011 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.18, G:0.24, T:0.09
Consensus pattern (16 bp):
CGAAAAGCCGAAATGC
Found at i:79477301 original size:29 final size:29
Alignment explanation
Indices: 79477260--79477338 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
79477250 GATAAAGGAT
79477260 TTGGGCCTAATGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
** * * *
79477289 TTGGGTTTGATGGGTCGA-ATGAATGTGAA
1 TTGGGCCTAATGGG-CCATATGAATATGAA
79477318 TTGGGCCTAATGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
79477339 GATGAGATTG
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
28 2 0.05
29 35 0.90
30 2 0.05
ACGTcount: A:0.25, C:0.11, G:0.33, T:0.30
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:79479458 original size:37 final size:37
Alignment explanation
Indices: 79479399--79479472 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
79479389 AGCTCAGACG
*
79479399 AAATCTCCACACGAAGTTATCGGGTCTCACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
* *
79479436 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
79479473 TTATTTCCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.20
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
Found at i:79479643 original size:91 final size:90
Alignment explanation
Indices: 79479482--79479656 Score: 278
Period size: 91 Copynumber: 1.9 Consensus size: 90
79479472 ATTATTTCCA
* *
79479482 AGTTTCATGTACATTTAATCACATGTTACAACATTCACATCGACTGTCATATTTGTAATTCATTT
1 AGTTTCATGCACATTTAATCACATGTTACAACATTCACATCGACTATCATATTTGTAATTCATTT
*
79479547 GCCTCATCAAATATCTAATATCACAG
66 ACCTCATC-AATATCTAATATCACAG
* * * *
79479573 AGTTTCATGCATATTTATTCACATGTTACAGCATTCACATCGACTATCATATTTGTAATTTATTT
1 AGTTTCATGCACATTTAATCACATGTTACAACATTCACATCGACTATCATATTTGTAATTCATTT
79479638 ACCTCATCAATATCTAATA
66 ACCTCATCAATATCTAATA
79479657 AAACACGCCT
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 11 0.14
91 66 0.86
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (90 bp):
AGTTTCATGCACATTTAATCACATGTTACAACATTCACATCGACTATCATATTTGTAATTCATTT
ACCTCATCAATATCTAATATCACAG
Found at i:79479917 original size:47 final size:47
Alignment explanation
Indices: 79479847--79480036 Score: 281
Period size: 47 Copynumber: 4.0 Consensus size: 47
79479837 TATATATATT
* * * *
79479847 TCACATTGACCGTTCGGCTTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
79479894 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
79479941 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
79479988 TCACATTGGCCGTTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
79480035 TC
1 TC
79480037 GCATGAAATC
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:79479968 original size:22 final size:22
Alignment explanation
Indices: 79479893--79479968 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
79479883 GTTCATATTC
79479893 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
79479915 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
79479939 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
79479962 ATCACAT
1 ATCACAT
79479969 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:79486332 original size:19 final size:19
Alignment explanation
Indices: 79486305--79486343 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
79486295 CCGTTTAAAT
*
79486305 AGTACTTCATCCA-TATAAC
1 AGTAATTCAT-CAGTATAAC
79486324 AGTAATTCATCAGTATAAC
1 AGTAATTCATCAGTATAAC
79486343 A
1 A
79486344 TATAGCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (19 bp):
AGTAATTCATCAGTATAAC
Found at i:79497238 original size:50 final size:50
Alignment explanation
Indices: 79497153--79497292 Score: 117
Period size: 50 Copynumber: 2.8 Consensus size: 50
79497143 ATTATATTGA
* * * * *
79497153 TCTTCGTGAGCTTCCCAAATTA-GGCTTTTCGTGAGCTTCCTG-TTAAATTGT
1 TCTTTGTGAACTTCCC-AATTACGGC-TCTCATGAGCTTCCTGATTAAA-AGT
* * *
79497204 CTCTTTGTGAGCTTCCCGA-TA-GGCTCATCATGAGCTTTCTGATTAAAAGT
1 -TCTTTGTGAACTTCCCAATTACGGCTC-TCATGAGCTTCCTGATTAAAAGT
* *
79497254 TCTTTTTGAACTTCTCAATTACGGCTCTCATGAGCTTCC
1 TCTTTGTGAACTTCCCAATTACGGCTCTCATGAGCTTCC
79497293 CATTATATAG
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
49 15 0.21
50 32 0.44
51 11 0.15
52 15 0.21
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (50 bp):
TCTTTGTGAACTTCCCAATTACGGCTCTCATGAGCTTCCTGATTAAAAGT
Found at i:79497345 original size:23 final size:24
Alignment explanation
Indices: 79497314--79497359 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
79497304 CCAGATAAGC
79497314 TTCTCGATA-GGCTCTTTGTGAGG
1 TTCTCGATATGGCTCTTTGTGAGG
*
79497337 TTCTTGATATGGCTCTTTGTGAG
1 TTCTCGATATGGCTCTTTGTGAG
79497360 CTACCTGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.13, C:0.15, G:0.28, T:0.43
Consensus pattern (24 bp):
TTCTCGATATGGCTCTTTGTGAGG
Found at i:79509718 original size:28 final size:28
Alignment explanation
Indices: 79509686--79509753 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
79509676 AAAACGAAGC
79509686 ACATGCCCGTGTCCTTCACACGGCCTAG
1 ACATGCCCGTGTCCTTCACACGGCCTAG
*
79509714 ACATGACCGTGTCCTTCACACGGCCTAG
1 ACATGCCCGTGTCCTTCACACGGCCTAG
79509742 ACATGCCCGTGT
1 ACATGCCCGTGT
79509754 GGTTGCCCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.19, C:0.37, G:0.22, T:0.22
Consensus pattern (28 bp):
ACATGCCCGTGTCCTTCACACGGCCTAG
Found at i:79515556 original size:41 final size:41
Alignment explanation
Indices: 79515511--79515724 Score: 259
Period size: 41 Copynumber: 5.2 Consensus size: 41
79515501 AGATTATTGT
* *
79515511 TGAATTGCACATACATGCTCCTGTTTGTACTTCGATACCCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * **
79515552 TGAATTGCACATACATGCTCCTTTTTGTACTTCAATACCCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * * * * *
79515593 TAAATTGCAAATATGTGCCCCTATTTGTACTTTGATACTCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * *
79515634 TGAATTGCACATACGTGCTCTTGTTTGTACTTTGGTACCCT
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * *
79515675 TGAATTTCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
79515716 TGAA-TGCAC
1 TGAATTGCAC
79515725 TTTTTTGCCC
Statistics
Matches: 148, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 4 0.03
41 144 0.97
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (41 bp):
TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
Found at i:79517096 original size:49 final size:50
Alignment explanation
Indices: 79517018--79517378 Score: 229
Period size: 46 Copynumber: 7.6 Consensus size: 50
79517008 GTATGATGCT
79517018 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-A-AATCAAG-GCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATC--GTGC-C
* * * * *
79517068 -ATGCCATGTCCCAAACATGGTCTGACACTAGCTCTCAGATATTCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGTGCC
* *
79517117 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTC-TAT-A-CGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA--TCAGATAATCGTGCC
* * * *
79517165 GATGCCATGTCCCAGACAAGGTCTTACACT-G--A-CACAT-CTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGT-GCC
* * * * *
79517211 AATG-CATGTCCTAGACAT-GTCTTACACTGGCT-T-ACAT-CTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCG-TGCC
* * * * * *
79517257 GATG-CATGTCCTAGACA-GGTCTTACACTAGCTCTC-G-T-CTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATC-GTGCC
* *
79517303 GATGCGATGTCCCAGACATGGTCTTACACTGGCTCTC--ATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGT-GCC
79517351 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
79517379 AGCACACAAA
Statistics
Matches: 253, Mismatches: 35, Indels: 50
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 15 0.06
46 66 0.26
47 26 0.10
48 59 0.23
49 36 0.14
50 33 0.13
51 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGTGCC
Found at i:79517335 original size:94 final size:93
Alignment explanation
Indices: 79517013--79517381 Score: 326
Period size: 94 Copynumber: 3.9 Consensus size: 93
79517003 ATAGGGTATG
* * *
79517013 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAAAATCAAGGCTC-ATGCCATGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATATCGAGGC-CGATGCCATGT
* * *
79517077 CCCAAACATGGTCTGACACTAGCTCTCAGATATTC
63 CCCAGACA-GGTCTTACACTAGCTCTC-G-T-CTC
* * * *
79517112 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTCTATACG-TGCCGATGCCATGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATAT-CGAGGCCGATGCCATGT
* * *
79517175 CCCAGACAAGGTCTTACACT-G-ACACATCTC
63 CCCAGAC-AGGTCTTACACTAGCTCTCGTCTC
* * *
79517205 ATAGCCAATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATATCGAGGCCGATGCCATGTC
*
79517267 CTAGACAGGTCTTACACTAGCTCTCGTCTC
64 CCAGACAGGTCTTACACTAGCTCTCGTCTC
* * * *
79517297 AATGCTGATGCGATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CATGT
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACAT-ATCGAGGCCGATGCCATGT
*
79517360 CCCAGACATGTCTTACACTAGC
63 CCCAGACAGGTCTTACACTAGC
79517382 ACACAAATAA
Statistics
Matches: 221, Mismatches: 35, Indels: 33
0.76 0.12 0.11
Matches are distributed among these distances:
90 12 0.05
91 14 0.06
92 32 0.14
93 32 0.14
94 58 0.26
95 1 0.00
96 2 0.01
97 2 0.01
98 31 0.14
99 37 0.17
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (93 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATCGAGGCCGATGCCATGTCCC
AGACAGGTCTTACACTAGCTCTCGTCTC
Found at i:79517726 original size:76 final size:76
Alignment explanation
Indices: 79517600--79518056 Score: 905
Period size: 76 Copynumber: 6.0 Consensus size: 76
79517590 GGCTTAGTCG
79517600 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
79517665 TCATTCATTTC
66 TCATTCATTTC
79517676 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
79517741 TCATTCATTTC
66 TCATTCATTTC
79517752 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
79517817 TCATTCATTTC
66 TCATTCATTTC
79517828 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
79517893 TCATTCATTTC
66 TCATTCATTTC
79517904 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
79517969 TCATTCATTTC
66 TCATTCATTTC
*
79517980 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAGT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
79518045 TCATTCATTTC
66 TCATTCATTTC
79518056 A
1 A
79518057 TCAGCATATT
Statistics
Matches: 380, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 380 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (76 bp):
ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
TCATTCATTTC
Found at i:79524903 original size:49 final size:47
Alignment explanation
Indices: 79524784--79524915 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 47
79524774 AGGGTATGAT
* *
79524784 GCCGATGCCATGTCCCAGACATGGTCTTTCACTGGCTCAACCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAACCATCAA
* * * *
79524831 GTCGATGCCATGTCCCAGGCATGGTCTTACACTGACT-ATCGCAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAAC-C-ATC-AA
* *
79524880 GCCGACGCCATGTCCTAGACATGGTCTTACACTGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
79524916 ACCTCTATAA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 2 0.03
47 34 0.47
48 3 0.04
49 33 0.46
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAACCATCAA
Found at i:79525022 original size:46 final size:47
Alignment explanation
Indices: 79524972--79525080 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 47
79524962 GATGAGGCAA
* * *
79524972 ACATGTCTTACACTGGCT-TACATCTCGAGGCCAATG-CATGTCTCAG
1 ACATGTCTTACACTAGCTCT-CATCTCAAGGCCAATGCCATGTCCCAG
* * *
79525018 ACATGTCTTGCACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAG
1 ACATGTCTTACACTAGCTCTCATCTCAAGGCCAATGCCATGTCCCAG
*
79525065 ACATGTTTTACACTAG
1 ACATGTCTTACACTAG
79525081 TACACAAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
46 29 0.55
47 24 0.45
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
ACATGTCTTACACTAGCTCTCATCTCAAGGCCAATGCCATGTCCCAG
Found at i:79526814 original size:24 final size:26
Alignment explanation
Indices: 79526768--79526815 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
79526758 TTAAGGGAAG
79526768 ATATGTATGTGAATGAATGTATGATA
1 ATATGTATGTGAATGAATGTATGATA
*
79526794 ATATG-ATTTGAATG-ATGTATGA
1 ATATGTATGTGAATGAATGTATGA
79526816 AATGTATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 8 0.38
26 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (26 bp):
ATATGTATGTGAATGAATGTATGATA
Found at i:79527937 original size:62 final size:62
Alignment explanation
Indices: 79527862--79527984 Score: 237
Period size: 62 Copynumber: 2.0 Consensus size: 62
79527852 AGGCTCCATA
79527862 CAGACATATTTGAAGTGGGTTTAAAATTTGGAGTTCAAATTCAGAAGAAATGTGATAAAATC
1 CAGACATATTTGAAGTGGGTTTAAAATTTGGAGTTCAAATTCAGAAGAAATGTGATAAAATC
*
79527924 CAGACATATTTGAAGTGGGTTTAAAATTTGGAGTTCAAATTCAGATGAAATGTGATAAAAT
1 CAGACATATTTGAAGTGGGTTTAAAATTTGGAGTTCAAATTCAGAAGAAATGTGATAAAAT
79527985 ATATGAAATT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (62 bp):
CAGACATATTTGAAGTGGGTTTAAAATTTGGAGTTCAAATTCAGAAGAAATGTGATAAAATC
Found at i:79533333 original size:49 final size:49
Alignment explanation
Indices: 79533256--79533386 Score: 181
Period size: 49 Copynumber: 2.7 Consensus size: 49
79533246 TGAAAAAGTG
* * *
79533256 AGATGGGCCATTGGCAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
1 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
*
79533305 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAGATA
1 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
* * * * *
79533354 TGATTGGCCACTAGTAAGGCACGTTAGTTGCTA
1 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTA
79533387 ACTAGAATGG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (49 bp):
AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
Found at i:79533403 original size:49 final size:48
Alignment explanation
Indices: 79533271--79533438 Score: 165
Period size: 49 Copynumber: 3.5 Consensus size: 48
79533261 GGCCATTGGC
* * * * * *
79533271 AGGGCATGTTAGTTGCTATCCAGATTGACAAATAAGATAGGCCACTGGT
1 AGGGCATGTTAGTTGCTAACCAGAATGACAGATATGCT-GGCCACTAGT
* * *
79533320 AGGGCATGTTAGTTGCTATCCAGATTGACAGATATGATTGGCCACTAGT
1 AGGGCATGTTAGTTGCTAACCAGAATGACAGATATG-CTGGCCACTAGT
* * * * * *
79533369 AAGGCACGTTAGTTGCTAACTAGAATGGCGGATATGCTGGGCACTAGT
1 AGGGCATGTTAGTTGCTAACCAGAATGACAGATATGCTGGCCACTAGT
* *
79533417 AGGGCATGTTAATTGTTAACCA
1 AGGGCATGTTAGTTGCTAACCA
79533439 TTGTAGAGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
48 27 0.27
49 72 0.72
50 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (48 bp):
AGGGCATGTTAGTTGCTAACCAGAATGACAGATATGCTGGCCACTAGT
Found at i:79533646 original size:13 final size:13
Alignment explanation
Indices: 79533630--79533655 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79533620 TTATGTAGTT
79533630 TATTGCATGGTAA
1 TATTGCATGGTAA
79533643 TATTGCATGGTAA
1 TATTGCATGGTAA
79533656 GTGTTAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TATTGCATGGTAA
Found at i:79537324 original size:25 final size:25
Alignment explanation
Indices: 79537296--79537365 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
79537286 CTCTTTTAAT
79537296 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
79537321 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
79537346 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
79537366 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:79537597 original size:27 final size:27
Alignment explanation
Indices: 79537567--79537781 Score: 126
Period size: 27 Copynumber: 9.0 Consensus size: 27
79537557 AGGGGCAAAT
* * *
79537567 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
79537594 GGTAATCCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
79537621 GGT-ATTCCTACCCTACAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* *
79537648 AGTAATTCTACCCTTC-A-GG------
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79537667 GGT-ATTTTACCCTACAAGGGTAT---
1 GGTAATTCTACCCTACAAGGGTATTTC
79537690 ------TCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
79537711 GGTAATTCTACCCTAC-A-GG------
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79537730 GGT-ATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
79537756 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
79537782 TGATATTTTA
Statistics
Matches: 148, Mismatches: 15, Indels: 50
0.69 0.07 0.23
Matches are distributed among these distances:
18 39 0.26
19 6 0.04
20 4 0.03
25 4 0.03
26 6 0.04
27 86 0.58
28 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:79537679 original size:18 final size:18
Alignment explanation
Indices: 79537656--79537709 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
79537646 TCAGTAATTC
* *
79537656 TACCCTTCAGGGGTATTT
1 TACCCTACAAGGGTATTT
*
79537674 TACCCTACAAGGGTATTC
1 TACCCTACAAGGGTATTT
79537692 TACCCTACAAGGGTATTT
1 TACCCTACAAGGGTATTT
79537710 CGGTAATTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (18 bp):
TACCCTACAAGGGTATTT
Found at i:79537721 original size:63 final size:64
Alignment explanation
Indices: 79537621--79537753 Score: 223
Period size: 63 Copynumber: 2.1 Consensus size: 64
79537611 AGGGTATTTT
* *
79537621 GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTTCAGGGGTATTTTACCCTACAAG
1 GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCTACCCTACAAG
* *
79537685 GGTATT-CTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCTACCCTACAGG
1 GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCTACCCTACAAG
79537748 GGTATT
1 GGTATT
79537754 TCGATAATTC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
63 59 0.91
64 6 0.09
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (64 bp):
GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCTACCCTACAAG
Found at i:79537723 original size:45 final size:45
Alignment explanation
Indices: 79537674--79537780 Score: 187
Period size: 45 Copynumber: 2.4 Consensus size: 45
79537664 AGGGGTATTT
* *
79537674 TACCCTACAAGGGTATTCTACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTCTACCCTACAAGGGTATTTCGATAATTC
*
79537719 TACCCTACAGGGGTATTCTACCCTACAGGGGTATTTCGATAATTC
1 TACCCTACAGGGGTATTCTACCCTACAAGGGTATTTCGATAATTC
79537764 TACCCTACAGGGGTATT
1 TACCCTACAGGGGTATT
79537781 TTGATATTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (45 bp):
TACCCTACAGGGGTATTCTACCCTACAAGGGTATTTCGATAATTC
Found at i:79537738 original size:18 final size:18
Alignment explanation
Indices: 79537715--79537753 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
79537705 TATTTCGGTA
79537715 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
79537733 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
79537751 ATT
1 ATT
79537754 TCGATAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (18 bp):
ATTCTACCCTACAGGGGT
Found at i:79537824 original size:27 final size:27
Alignment explanation
Indices: 79537776--79537939 Score: 152
Period size: 27 Copynumber: 6.1 Consensus size: 27
79537766 CCCTACAGGG
*
79537776 GTATTTTGAT-ATTTTACAAATCGAGA
1 GTATTTTGGTAATTTTACAAATCGAGA
* * *
79537802 GTATTTTGATAATTTCACAAATC-AGGG
1 GTATTTTGGTAATTTTACAAATCGA-GA
** * *
79537829 GTATTTTGGTAATTTTACAAGCCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGA
**
79537856 GTATTTTGGTAATTTTACTGATCGAGA
1 GTATTTTGGTAATTTTACAAATCGAGA
* * * *
79537883 GTATTTTGGTAATTTTGCAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGA
* **
79537910 GTATTTTAGTAATTTTTTAAATCGAGA
1 GTATTTTGGTAATTTTACAAATCGAGA
79537937 GTA
1 GTA
79537940 AAACGGCAAT
Statistics
Matches: 111, Mismatches: 24, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
26 11 0.10
27 99 0.89
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCGAGA
Found at i:79537869 original size:54 final size:54
Alignment explanation
Indices: 79537771--79537924 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 54
79537761 TTCTACCCTA
* * * * *
79537771 CAGGGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAT
* * **
79537824 CAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAT
* * *
79537878 C-GAGAGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAGTAATTT
1 CAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
79537925 TTTAAATCGA
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 15 0.17
54 71 0.83
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAT
Found at i:79537896 original size:81 final size:80
Alignment explanation
Indices: 79537774--79537925 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 80
79537764 TACCCTACAG
* * *
79537774 GGGTATTTTGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGT
1 GGGTATTTTGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTTAGT
79537839 AATTTTACAAGCCAA
66 AATTTTACAAGCCAA
* ** * **
79537854 GGGTATTTTGGTAATTTTACTGATCGAGAGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAG
1 GGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTTAG
79537919 TAATTTT
65 TAATTTT
79537926 TTAAATCGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
80 11 0.18
81 51 0.82
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTTAGT
AATTTTACAAGCCAA
Found at i:79537997 original size:26 final size:27
Alignment explanation
Indices: 79537918--79538046 Score: 172
Period size: 27 Copynumber: 4.8 Consensus size: 27
79537908 GGGTATTTTA
* * *
79537918 GTAATTTTTTAAATCGAGAGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
79537945 GCAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
79537972 ATAATTCTATAAATC-AGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
79537998 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
79538025 GTAATT-TCGTAAATCGAGGGTA
1 GTAATTCT-ATAAATCGAGGGTA
79538047 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
26 26 0.29
27 65 0.71
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:79538038 original size:53 final size:54
Alignment explanation
Indices: 79537918--79538046 Score: 172
Period size: 53 Copynumber: 2.4 Consensus size: 54
79537908 GGGTATTTTA
** * *
79537918 GTAATTTTTTAAATCGAGAGTAAAACGGCAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTCATAAATCGAGGGTAAAACGGCAATTCTATAAATCGAGGGTAAAACG
* *
79537972 ATAA-TTCTATAAATC-AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTC-ATAAATCGAGGGTAAAACGGCAATTCTATAAATCGAGGGTAAAACG
*
79538025 GTAATTTCGTAAATCGAGGGTA
1 GTAATTTCATAAATCGAGGGTA
79538047 CTTTGGTAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
53 46 0.72
54 18 0.28
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTTCATAAATCGAGGGTAAAACGGCAATTCTATAAATCGAGGGTAAAACG
Found at i:79539654 original size:20 final size:20
Alignment explanation
Indices: 79539617--79539653 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79539607 TACTAAACCG
*
79539617 AAAACTTAGGAAACTTTTAC
1 AAAACTTAGAAAACTTTTAC
79539637 AAAACTTAGAAAA-TTTT
1 AAAACTTAGAAAACTTTT
79539654 TGCTATGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (20 bp):
AAAACTTAGAAAACTTTTAC
Found at i:79549615 original size:23 final size:24
Alignment explanation
Indices: 79549565--79549618 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
79549555 TACAGTCGTA
*
79549565 AGAGCTTACTATTTTCAGCTCATC
1 AGAGCTTACCATTTTCAGCTCATC
*
79549589 AGAGCTTACCGTTTT-AGCTCAGT-
1 AGAGCTTACCATTTTCAGCTCA-TC
79549612 AGAGCTT
1 AGAGCTT
79549619 GGTGTCTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (24 bp):
AGAGCTTACCATTTTCAGCTCATC
Found at i:79550842 original size:13 final size:13
Alignment explanation
Indices: 79550809--79550846 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
79550799 TTGGCATGAC
*
79550809 CTAG-CACACGGC
1 CTAGACACACGGG
79550821 CTA-ACACACGGG
1 CTAGACACACGGG
79550833 CTAGACACACGGG
1 CTAGACACACGGG
79550846 C
1 C
79550847 CTGTGGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.29, C:0.37, G:0.26, T:0.08
Consensus pattern (13 bp):
CTAGACACACGGG
Found at i:79553399 original size:34 final size:34
Alignment explanation
Indices: 79553352--79553422 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
79553342 ATGATGAGAT
*
79553352 TGTGTATTAATTACAGACAGCTAAATAAGGTGAC
1 TGTGTATTAATTACAGACAACTAAATAAGGTGAC
* *
79553386 TGTGTATTGATTACAGACAACTGAATAAGGTGAC
1 TGTGTATTAATTACAGACAACTAAATAAGGTGAC
79553420 TGT
1 TGT
79553423 AAAGAACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (34 bp):
TGTGTATTAATTACAGACAACTAAATAAGGTGAC
Found at i:79555950 original size:30 final size:30
Alignment explanation
Indices: 79555916--79555976 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79555906 TTCCCGAGCC
*
79555916 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * * *
79555946 TAGGGGCAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
79555976 T
1 T
79555977 GAGTTAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:79560008 original size:25 final size:26
Alignment explanation
Indices: 79559938--79560016 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
79559928 AAGATTGTAT
* *
79559938 GAGCTTACTGATATATCAGCTCGTAA
1 GAGCTTACTGATACATCAGCTCGGAA
* *
79559964 GAGCTTACTG-TCCATCAGCTCAGGAG
1 GAGCTTACTGATACATCAGCTC-GGAA
*
79559990 GAGCTTACTGAT-CAT-AGCTCGAAA
1 GAGCTTACTGATACATCAGCTCGGAA
79560014 GAG
1 GAG
79560017 TGGAAAAGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.11
25 14 0.31
26 25 0.56
27 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
GAGCTTACTGATACATCAGCTCGGAA
Found at i:79563737 original size:48 final size:48
Alignment explanation
Indices: 79563685--79563889 Score: 206
Period size: 48 Copynumber: 4.4 Consensus size: 48
79563675 CTTTAACCTG
* *
79563685 GACATGGTCTTACATTGGATCACATATCGATGCTAATGCCATGTCCCA
1 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
* * * * *
79563733 GACATGGTATTACGTGGGATCATAGATCGATGCCAATGCCATGTCCTA
1 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
* *
79563781 GACATGGTCTTACATGGGATCACATATTGATGCCGAT---A-G-CCCA
1 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
* ** * ** *
79563824 G-CTATGGTCTTACACGAAATTACATATCGATGCCAAAACCATGTCCTA
1 GAC-ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
*
79563872 GACATGGTCTTGCATGGG
1 GACATGGTCTTACATGGG
79563890 CTCGTACATA
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 31 0.25
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 87 0.70
49 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (48 bp):
GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
Found at i:79576054 original size:56 final size:56
Alignment explanation
Indices: 79575957--79576082 Score: 182
Period size: 55 Copynumber: 2.2 Consensus size: 56
79575947 CATGAGATTG
* * *
79575957 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATA
* *
79576014 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATA
*
79576069 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
79576083 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 23 0.37
56 22 0.35
57 18 0.29
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (56 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATA
Found at i:79576069 original size:27 final size:28
Alignment explanation
Indices: 79575957--79576082 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
79575947 CATGAGATTG
* * * *
79575957 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
79575986 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
79576014 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
79576042 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79576069 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
79576083 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.27
28 48 0.53
29 18 0.20
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79576093 original size:27 final size:27
Alignment explanation
Indices: 79575985--79576095 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
79575975 TAAATTGTAC
* * *
79575985 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
79576013 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
79576041 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
79576068 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
79576095 A
1 A
79576096 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:79580434 original size:39 final size:39
Alignment explanation
Indices: 79580390--79580474 Score: 116
Period size: 40 Copynumber: 2.2 Consensus size: 39
79580380 CCTTCAGAGT
*
79580390 TTAGCCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
* ** *
79580429 TTAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGAC
1 TTAG-CCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
79580469 TTAGCC
1 TTAGCC
79580475 CGGTATAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 6 0.15
40 34 0.85
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
TTAGCCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
Found at i:79580457 original size:40 final size:40
Alignment explanation
Indices: 79580413--79580520 Score: 137
Period size: 39 Copynumber: 2.7 Consensus size: 40
79580403 GCCACTAGCT
* *
79580413 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCA
*
79580453 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCA
* * ** *
79580492 CGAGTGTGTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
79580521 CAACCGAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
39 31 0.53
40 28 0.47
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCA
Found at i:79581846 original size:19 final size:19
Alignment explanation
Indices: 79581822--79581858 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
79581812 TGCCTTGATT
79581822 AAGATAACCTAGCAATGAA
1 AAGATAACCTAGCAATGAA
*
79581841 AAGATAACTTAGCAATGA
1 AAGATAACCTAGCAATGA
79581859 TCTCAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (19 bp):
AAGATAACCTAGCAATGAA
Found at i:79582437 original size:24 final size:24
Alignment explanation
Indices: 79582393--79582455 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
79582383 GTATATGTAT
* *
79582393 GCTCATACAAGTTGAGAATCGATAA
1 GCTCATACGAGTTG-CAATCGATAA
** *
79582418 GCTTTTACGAGTTGCAATCGGTAA
1 GCTCATACGAGTTGCAATCGATAA
79582442 GCTCATACGAGTTG
1 GCTCATACGAGTTG
79582456 AGAATTGGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 20 0.65
25 11 0.35
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (24 bp):
GCTCATACGAGTTGCAATCGATAA
Found at i:79582470 original size:25 final size:25
Alignment explanation
Indices: 79582393--79582470 Score: 95
Period size: 25 Copynumber: 3.2 Consensus size: 25
79582383 GTATATGTAT
* *
79582393 GCTCATACAAGTTGAGAATCGATAA
1 GCTCATACGAGTTGAGAATCGGTAA
** *
79582418 GCTTTTACGAGTTG-CAATCGGTAA
1 GCTCATACGAGTTGAGAATCGGTAA
*
79582442 GCTCATACGAGTTGAGAATTGGTAA
1 GCTCATACGAGTTGAGAATCGGTAA
79582467 GCTC
1 GCTC
79582471 TCACGAGCTG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
24 20 0.47
25 23 0.53
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (25 bp):
GCTCATACGAGTTGAGAATCGGTAA
Found at i:79585620 original size:25 final size:25
Alignment explanation
Indices: 79585586--79585636 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
79585576 CCCTTATAAT
*
79585586 GTGAAAATGACCT-TTTTACCCCTAG
1 GTGAAAATGA-CTATTATACCCCTAG
79585611 GTGAAAATGACTATTATACCCCTAG
1 GTGAAAATGACTATTATACCCCTAG
79585636 G
1 G
79585637 GTTATGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACTATTATACCCCTAG
Found at i:79585695 original size:10 final size:10
Alignment explanation
Indices: 79585680--79585714 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
79585670 TTTGTACATA
79585680 ATATGCCATG
1 ATATGCCATG
79585690 ATATGCACATG
1 ATATGC-CATG
79585701 ATATGCCATG
1 ATATGCCATG
79585711 ATAT
1 ATAT
79585715 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:79585699 original size:21 final size:21
Alignment explanation
Indices: 79585675--79585714 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
79585665 ACTGATTTGT
79585675 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
79585696 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
79585715 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:79585720 original size:21 final size:20
Alignment explanation
Indices: 79585674--79585726 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
79585664 TACTGATTTG
*
79585674 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
79585695 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
79585716 TACATATATGC
1 TACATATATGC
79585727 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:79585794 original size:25 final size:25
Alignment explanation
Indices: 79585760--79585829 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
79585750 GAGGAAGTGC
* *
79585760 AAAATGGCTTTGCCCGAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
79585785 AAAAGGGCTTTGCCCCAGTTTACCT
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
79585810 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
79585830 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:79586123 original size:29 final size:30
Alignment explanation
Indices: 79586050--79586131 Score: 107
Period size: 29 Copynumber: 2.7 Consensus size: 30
79586040 CGTTTACAGT
79586050 AAAGGCTTCGGCCCAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGT-ATATGAATTATGA
*
79586081 AAAGGCTTCGGCCCAGTA-ATCG-TTTAATG-
1 AAAGGCTTCGGCCCAGTATAT-GAATT-ATGA
79586110 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
79586132 TTGAGACTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 23 0.49
30 7 0.15
31 17 0.36
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGAATTATGA
Found at i:79586314 original size:34 final size:34
Alignment explanation
Indices: 79586271--79586338 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
79586261 CAGAGCCGGA
79586271 GGGGATTCAGAGTGGCCACGGGGATCGCTATTGG
1 GGGGATTCAGAGTGGCCACGGGGATCGCTATTGG
*
79586305 GGGGATTCAGAGTGGCCACGGTGATCGCTATTGG
1 GGGGATTCAGAGTGGCCACGGGGATCGCTATTGG
79586339 ACTTTAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.43, T:0.22
Consensus pattern (34 bp):
GGGGATTCAGAGTGGCCACGGGGATCGCTATTGG
Found at i:79591182 original size:38 final size:37
Alignment explanation
Indices: 79591136--79591212 Score: 109
Period size: 38 Copynumber: 2.1 Consensus size: 37
79591126 TGAAGAAGGG
* * **
79591136 GAAGAGACATCTATCTTGGATTCACGAATGATCGGAA
1 GAAGAGACATCTATCCTAGATTCACGAACAATCGGAA
79591173 GNAAGAGACATCTATCCTAGATTCACGAACAATCGGAA
1 G-AAGAGACATCTATCCTAGATTCACGAACAATCGGAA
79591211 GA
1 GA
79591213 TTAAAGAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 2 0.06
38 33 0.94
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.21
Consensus pattern (37 bp):
GAAGAGACATCTATCCTAGATTCACGAACAATCGGAA
Found at i:79592072 original size:30 final size:30
Alignment explanation
Indices: 79592016--79592072 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
79592006 GAGACGATAC
*
79592016 TTTAAAAGTATTTCCTGCTATTTAGTATAG
1 TTTAAAAGTATTTCCTGCTATGTAGTATAG
* *
79592046 TTTAAAAGTATTTCTTGTTATGTAGTA
1 TTTAAAAGTATTTCCTGCTATGTAGTA
79592073 GTGCATGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.49
Consensus pattern (30 bp):
TTTAAAAGTATTTCCTGCTATGTAGTATAG
Found at i:79595574 original size:32 final size:32
Alignment explanation
Indices: 79595538--79595601 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
79595528 AGTGGCTAAG
79595538 TGTTCTAGGAAGATGAGAGAGGTCCCAAGTTC
1 TGTTCTAGGAAGATGAGAGAGGTCCCAAGTTC
*
79595570 TGTTCTAGGCAGATGAGAGAGGTCCCAAGTTC
1 TGTTCTAGGAAGATGAGAGAGGTCCCAAGTTC
79595602 AGGCTTTGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (32 bp):
TGTTCTAGGAAGATGAGAGAGGTCCCAAGTTC
Found at i:79599242 original size:147 final size:147
Alignment explanation
Indices: 79598965--79599253 Score: 382
Period size: 147 Copynumber: 2.0 Consensus size: 147
79598955 CATCTACAAT
* * *
79598965 TTTTTTTCTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAGTCTCCCCTATTAC
1 TTTTTTACTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATATTAC
* * * * * * * *
79599030 AGGGTTCGACTACTCTACCCTTCATGTATTACAACTTAGATATCTTCCTGTACAGGGCTTCAATA
66 AGGGATAGACTACACTACCCTTCATGCATTACAACCTAGATATCTCCCTGCACAGAGCTTCAATA
*
79599095 CTTATGCCGTTTACATA
131 CTGATGCCGTTTACATA
** *
79599112 TTTTTTACTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTAC
1 TTTTTTACTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATATTAC
* * * * *
79599177 AGGGATAGACTACACTGACCTTTGA-GCATTACGACCTGGATATCTCCCTGCACAGAGCTTTAAT
66 AGGGATAGACTACACT-ACCCTTCATGCATTACAACCTAGATATCTCCCTGCACAGAGCTTCAAT
79599241 ACTGATGCCGTTT
130 ACTGATGCCGTTT
79599254 GTTTCTATAG
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
147 115 0.95
148 6 0.05
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (147 bp):
TTTTTTACTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATATTAC
AGGGATAGACTACACTACCCTTCATGCATTACAACCTAGATATCTCCCTGCACAGAGCTTCAATA
CTGATGCCGTTTACATA
Found at i:79607147 original size:40 final size:40
Alignment explanation
Indices: 79607096--79607244 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
79607086 TGGACGATAT
* * *
79607096 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
79607136 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
79607176 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
79607216 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
79607245 GGTTGTTACA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.04
40 92 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:79608408 original size:246 final size:247
Alignment explanation
Indices: 79607973--79608454 Score: 957
Period size: 246 Copynumber: 2.0 Consensus size: 247
79607963 GCCATTGGAA
79607973 TGGCTAATCATGATCATATTTGGTGCTATGTATGTCAAATTGCTAGCTAATCCATGGAAACCATG
1 TGGCTAATCATGATCATATTTGGTGCTATGTATGTCAAATTGCTAGCTAATCCATGGAAACCATG
79608038 AAATAGGTAAAATTTATCACAAAATAGATTCAGACAGCAGTAGTGACATGAATTTGAAAAATAAC
66 AAATAGGTAAAATTTATCACAAAATAGATTCAGACAGCAGTAGTGACATGAATTTGAAAAATAAC
79608103 TAAAAATAGTAGAAGTTGAATTAAATAATGAATAAGTTATGGAATCGAAGCTTGATGAGTCTATT
131 TAAAAATAGTAGAAGTTGAATTAAATAATGAATAAGTTATGGAATCGAAGCTTGATGAGTCTATT
79608168 TTCATATGGAAGAAACAAAACAGGTATATGAGCTAGATTTTGTCACATATCC
196 TTCATATGGAAGAAACAAAACAGGTATATGAGCTAGATTTTGTCACATATCC
79608220 TGGCTAATCATGATCATATTTGGTGCTATGTATGTCAAATTGCTAGCTAATCCATGG-AACCATG
1 TGGCTAATCATGATCATATTTGGTGCTATGTATGTCAAATTGCTAGCTAATCCATGGAAACCATG
79608284 AAATAGGTAAAATTTATCACAAAATAGATTCAGACAGCAGTAGTGACATGAATTTGAAAAATAAC
66 AAATAGGTAAAATTTATCACAAAATAGATTCAGACAGCAGTAGTGACATGAATTTGAAAAATAAC
79608349 TAAAAATAGTAGAAGTTGAATTAAATAATGAATAAGTTATGGAATCGAAGCTTGATGAGTCTATT
131 TAAAAATAGTAGAAGTTGAATTAAATAATGAATAAGTTATGGAATCGAAGCTTGATGAGTCTATT
79608414 TTCATATGGAAGAAACAAAACAGGTATATGAGCTAGATTTT
196 TTCATATGGAAGAAACAAAACAGGTATATGAGCTAGATTTT
79608455 ATGAGATGTT
Statistics
Matches: 235, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
246 178 0.76
247 57 0.24
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.30
Consensus pattern (247 bp):
TGGCTAATCATGATCATATTTGGTGCTATGTATGTCAAATTGCTAGCTAATCCATGGAAACCATG
AAATAGGTAAAATTTATCACAAAATAGATTCAGACAGCAGTAGTGACATGAATTTGAAAAATAAC
TAAAAATAGTAGAAGTTGAATTAAATAATGAATAAGTTATGGAATCGAAGCTTGATGAGTCTATT
TTCATATGGAAGAAACAAAACAGGTATATGAGCTAGATTTTGTCACATATCC
Found at i:79609033 original size:32 final size:32
Alignment explanation
Indices: 79608989--79609052 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
79608979 CAGAGCTACG
79608989 GTTTAGTCGATTCTAAGACTACCGTAATAAGT
1 GTTTAGTCGATTCTAAGACTACCGTAATAAGT
* *
79609021 GTTTAGTTGATTCTAGGACTACCGTAATAAGT
1 GTTTAGTCGATTCTAAGACTACCGTAATAAGT
79609053 ATGGTCTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (32 bp):
GTTTAGTCGATTCTAAGACTACCGTAATAAGT
Found at i:79631634 original size:28 final size:28
Alignment explanation
Indices: 79631610--79631735 Score: 130
Period size: 29 Copynumber: 4.4 Consensus size: 28
79631600 ATGTGGGTCG
79631610 GATGGGCCATATAAATGAGATTGGGCCT
1 GATGGGCCATATAAATGAGATTGGGCCT
* * * *
79631638 AATGGGCCATATGAATGTGAATTGGGCTT
1 GATGGGCCATATAAATGAG-ATTGGGCCT
* * *
79631667 TATGGGCCATATGAACATGA-TTTGGGCCA
1 GATGGGCCATAT-AA-ATGAGATTGGGCCT
*
79631696 GATGGGCCATCTAAATGAGATTGGGCCT
1 GATGGGCCATATAAATGAGATTGGGCCT
79631724 AGA-GGGCCATAT
1 -GATGGGCCATAT
79631736 GCATGTATGT
Statistics
Matches: 78, Mismatches: 15, Indels: 10
0.76 0.15 0.10
Matches are distributed among these distances:
27 4 0.05
28 33 0.42
29 37 0.47
30 1 0.01
31 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
GATGGGCCATATAAATGAGATTGGGCCT
Found at i:79643661 original size:13 final size:13
Alignment explanation
Indices: 79643643--79643667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79643633 TCCACACCAA
79643643 TATCATATTTGTC
1 TATCATATTTGTC
79643656 TATCATATTTGT
1 TATCATATTTGT
79643668 TAACCTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (13 bp):
TATCATATTTGTC
Found at i:79657129 original size:42 final size:43
Alignment explanation
Indices: 79657019--79657130 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 43
79657009 TCTCGTACAT
* *
79657019 TGCCAATGTCCTAGACGTGGTCTTACATGTAATCATATATCGA
1 TGCCAATGTCCTAGACGTGGTCTTACATGAAATCAAATATCGA
* *
79657062 TGCCATTGTCCTAGATAG-GGTCTTACATGAAATCAAATAT-GA
1 TGCCAATGTCCTAGA-CGTGGTCTTACATGAAATCAAATATCGA
* *
79657104 TGCCAATGTCCCAGACGTGGCCTTACA
1 TGCCAATGTCCTAGACGTGGTCTTACA
79657131 CGATAACACA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 23 0.39
43 34 0.58
44 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
TGCCAATGTCCTAGACGTGGTCTTACATGAAATCAAATATCGA
Found at i:79665247 original size:29 final size:29
Alignment explanation
Indices: 79665213--79665272 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
79665203 AACAAACTTC
79665213 ACAAAGCTCACATTATCAATAATGGCATA
1 ACAAAGCTCACATTATCAATAATGGCATA
79665242 ACAAAGCTCACATTATCAATAATGGCATA
1 ACAAAGCTCACATTATCAATAATGGCATA
79665271 AC
1 AC
79665273 TCAAAATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.22, G:0.10, T:0.23
Consensus pattern (29 bp):
ACAAAGCTCACATTATCAATAATGGCATA
Found at i:79667557 original size:43 final size:43
Alignment explanation
Indices: 79667484--79667632 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
79667474 TATTTATTCT
* * * *
79667484 CATGTAAGACCACGTTTGGGA-TGTTCGCATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGACAG-TGGCATCGATATGTGATTA
* * * * *
79667527 CGTGTAAGAACATGTCTAGGACATTGGCATCG-TATTTGATT-
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGATATGTGATTA
* * *
79667568 CATGTAAGACCCTATCTGGGACAGTGGCATTGATATGTGA-TA
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGATATGTGATTA
79667610 GCATGTAAGACCATGTCTGGGAC
1 -CATGTAAGACCATGTCTGGGAC
79667633 GCTGGAATTG
Statistics
Matches: 83, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
41 26 0.31
42 14 0.17
43 43 0.52
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATCGATATGTGATTA
Found at i:79667590 original size:41 final size:43
Alignment explanation
Indices: 79667510--79667632 Score: 126
Period size: 41 Copynumber: 2.9 Consensus size: 43
79667500 TGGGATGTTC
* * * * *
79667510 GCATCGATATGTGATTA-CGTGTAAGAACATGTCTAGGACATTG
1 GCATCGATATGTGA-TAGCATGTAAGACCATATCTGGGACAGTG
* * *
79667553 GCATCG-TATTTGAT-TCATGTAAGACCCTATCTGGGACAGTG
1 GCATCGATATGTGATAGCATGTAAGACCATATCTGGGACAGTG
* *
79667594 GCATTGATATGTGATAGCATGTAAGACCATGTCTGGGAC
1 GCATCGATATGTGATAGCATGTAAGACCATATCTGGGAC
79667633 GCTGGAATTG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
41 26 0.40
42 13 0.20
43 26 0.40
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GCATCGATATGTGATAGCATGTAAGACCATATCTGGGACAGTG
Found at i:79669721 original size:978 final size:978
Alignment explanation
Indices: 79667825--79669784 Score: 3895
Period size: 978 Copynumber: 2.0 Consensus size: 978
79667815 TATGTGCATT
79667825 TATGTAGTATATTCGGCCATATGCTATGTGAGTATATACATATGAGTTTATATATATTCAGTTAT
1 TATGTAGTATATTCGGCCATATGCTATGTGAGTATATACATATGAGTTTATATATATTCAGTTAT
79667890 ATAATGATATTATAGATTTGAAAAGGAATGATACTTTGATTATATATATATGTACATCCGGCCAA
66 ATAATGATATTATAGATTTGAAAAGGAATGATACTTTGATTATATATATATGTACATCCGGCCAA
79667955 GATAAAGTTTATATATGAAAGTATATATTATATATGAAATATTAAGCTTGAGACTAAATGTGATT
131 GATAAAGTTTATATATGAAAGTATATATTATATATGAAATATTAAGCTTGAGACTAAATGTGATT
79668020 ATGATATTATAATTTGGTGTGGTCAAAATGAGTTGATAATGTCTTTGAGTTGTTAGTTGCTTATA
196 ATGATATTATAATTTGGTGTGGTCAAAATGAGTTGATAATGTCTTTGAGTTGTTAGTTGCTTATA
79668085 ACTTACTAAGCTATGATAGCTTACTGTGTGTGTATGTTTGTCTCTGTTTTATAGATTTCGGAATC
261 ACTTACTAAGCTATGATAGCTTACTGTGTGTGTATGTTTGTCTCTGTTTTATAGATTTCGGAATC
79668150 AAGTTACAAGCTTTGGGATCGTCAACAAAGTCTATCACAATATCAACTATTTTCTATACTTTATA
326 AAGTTACAAGCTTTGGGATCGTCAACAAAGTCTATCACAATATCAACTATTTTCTATACTTTATA
79668215 AGTTAAACTCGAACTTATGACATGTATGGGCTAGTCTATGTGTTAGTTATTTTGAATGTGTATAT
391 AGTTAAACTCGAACTTATGACATGTATGGGCTAGTCTATGTGTTAGTTATTTTGAATGTGTATAT
79668280 ATTTAGCCATGCGAAAATGGATTAAACTTGATATTAATGCTTATATGTATTCGGTCTTGACATAG
456 ATTTAGCCATGCGAAAATGGATTAAACTTGATATTAATGCTTATATGTATTCGGTCTTGACATAG
79668345 GCTTGTTAATAAAGTATATTTCATGGTGCATATATGTGTGGTATTTGGCTAAATGGTTCGGCTTG
521 GCTTGTTAATAAAGTATATTTCATGGTGCATATATGTGTGGTATTTGGCTAAATGGTTCGGCTTG
79668410 ATTATTAGGTTAATTGATGATTTAGAAATTTAACATGAGATAAGCATATTCTGGTAAGTATGTTC
586 ATTATTAGGTTAATTGATGATTTAGAAATTTAACATGAGATAAGCATATTCTGGTAAGTATGTTC
79668475 TTAGAAAATATGTTTGTGATATTTAGTTAAATGATTCGGCAATGAGAAGTAAAAATTATAATGTA
651 TTAGAAAATATGTTTGTGATATTTAGTTAAATGATTCGGCAATGAGAAGTAAAAATTATAATGTA
79668540 TAATCGGTTTAACAATTAGCTCATTTATGTAAGTTTGTTTTATGGCATAGTTTGCATTTGTGGAT
716 TAATCGGTTTAACAATTAGCTCATTTATGTAAGTTTGTTTTATGGCATAGTTTGCATTTGTGGAT
79668605 GGTAATGAATCAGTTTGTGCAATGATAATGTACTCAAGGATATGGTTTCAGTTGTGACAAGTTTA
781 GGTAATGAATCAGTTTGTGCAATGATAATGTACTCAAGGATATGGTTTCAGTTGTGACAAGTTTA
*
79668670 TATAAGTTATGTTATGAACATATTATTGCTTGTGTAATTGGTTTATTTGGTACTAAATGTGATAG
846 TATAAGTTATGTTATGAACATATTATTGCTTGTGTAATTGGTTTATTTGCTACTAAATGTGATAG
79668735 AAAAATATGACTATGATCTATGGATGATGAGTTGGTCATTTGAGTAAGTAAAATGCATTTAGTTA
911 AAAAATATGACTATGATCTATGGATGATGAGTTGGTCATTTGAGTAAGTAAAATGCATTTAGTTA
79668800 ATA
976 ATA
79668803 TATGTAGTATATTCGGCCATATGCTATGTGAGTATATACATATGAGTTTATATATATTCAGTTAT
1 TATGTAGTATATTCGGCCATATGCTATGTGAGTATATACATATGAGTTTATATATATTCAGTTAT
79668868 ATAATGATATTATAGATTTGAAAAGGAATGATACTTTGATTATATATATATGTACATCCGGCCAA
66 ATAATGATATTATAGATTTGAAAAGGAATGATACTTTGATTATATATATATGTACATCCGGCCAA
79668933 GATAAAGTTTATATATGAAAGTATATATTATATATGAAATATTAAGCTTGAGACTAAATGTGATT
131 GATAAAGTTTATATATGAAAGTATATATTATATATGAAATATTAAGCTTGAGACTAAATGTGATT
79668998 ATGATATTATAATTTGGTGTGGTCAAAATGAGTTGATAATGTCTTTGAGTTGTTAGTTGCTTATA
196 ATGATATTATAATTTGGTGTGGTCAAAATGAGTTGATAATGTCTTTGAGTTGTTAGTTGCTTATA
79669063 ACTTACTAAGCTATGATAGCTTACTGTGTGTGTATGTTTGTCTCTGTTTTATAGATTTCGGAATC
261 ACTTACTAAGCTATGATAGCTTACTGTGTGTGTATGTTTGTCTCTGTTTTATAGATTTCGGAATC
79669128 AAGTTACAAGCTTTGGGATCGTCAACAAAGTCTATCACAATATCAACTATTTTCTATACTTTATA
326 AAGTTACAAGCTTTGGGATCGTCAACAAAGTCTATCACAATATCAACTATTTTCTATACTTTATA
79669193 AGTTAAACTCGAACTTATGACATGTATGGGCTAGTCTATGTGTTAGTTATTTTGAATGTGTATAT
391 AGTTAAACTCGAACTTATGACATGTATGGGCTAGTCTATGTGTTAGTTATTTTGAATGTGTATAT
79669258 ATTTAGCCATGCGAAAATGGATTAAACTTGATATTAATGCTTATATGTATTCGGTCTTGACATAG
456 ATTTAGCCATGCGAAAATGGATTAAACTTGATATTAATGCTTATATGTATTCGGTCTTGACATAG
79669323 GCTTGTTAATAAAGTATATTTCATGGTGCATATATGTGTGGTATTTGGCTAAATGGTTCGGCTTG
521 GCTTGTTAATAAAGTATATTTCATGGTGCATATATGTGTGGTATTTGGCTAAATGGTTCGGCTTG
79669388 ATTATTAGGTTAATTGATGATTTAGAAATTTAACATGAGATAAGCATATTCTGGTAAGTATGTTC
586 ATTATTAGGTTAATTGATGATTTAGAAATTTAACATGAGATAAGCATATTCTGGTAAGTATGTTC
79669453 TTAGAAAATATGTTTGTGATATTTAGTTAAATGATTCGGCAATGAGAAGTAAAAATTATAATGTA
651 TTAGAAAATATGTTTGTGATATTTAGTTAAATGATTCGGCAATGAGAAGTAAAAATTATAATGTA
79669518 TAATCGGTTTAACAATTAGCTCATTTATGTAAGTTTGTTTTATGGCATAGTTTGCATTTGTGGAT
716 TAATCGGTTTAACAATTAGCTCATTTATGTAAGTTTGTTTTATGGCATAGTTTGCATTTGTGGAT
*
79669583 GGTAATGAATCAGTTTGTGCAATGATAATGTACTGAAGGATATGGTTTCAGTTGTGACAAGTTTA
781 GGTAATGAATCAGTTTGTGCAATGATAATGTACTCAAGGATATGGTTTCAGTTGTGACAAGTTTA
79669648 TATAAGTTATGTTATGAACATATTATTGCTTGTGTAATTGGTTTATTTGCTACTAAATGTGATAG
846 TATAAGTTATGTTATGAACATATTATTGCTTGTGTAATTGGTTTATTTGCTACTAAATGTGATAG
79669713 AAAAATATGACTATGATCTATGGATGATGAGTTGGTCATTTGAGTAAGTAAAATGCATTTAGTTA
911 AAAAATATGACTATGATCTATGGATGATGAGTTGGTCATTTGAGTAAGTAAAATGCATTTAGTTA
79669778 ATA
976 ATA
79669781 -ATGT
1 TATGT
79669785 TAATTAACTA
Statistics
Matches: 980, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
977 4 0.00
978 976 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (978 bp):
TATGTAGTATATTCGGCCATATGCTATGTGAGTATATACATATGAGTTTATATATATTCAGTTAT
ATAATGATATTATAGATTTGAAAAGGAATGATACTTTGATTATATATATATGTACATCCGGCCAA
GATAAAGTTTATATATGAAAGTATATATTATATATGAAATATTAAGCTTGAGACTAAATGTGATT
ATGATATTATAATTTGGTGTGGTCAAAATGAGTTGATAATGTCTTTGAGTTGTTAGTTGCTTATA
ACTTACTAAGCTATGATAGCTTACTGTGTGTGTATGTTTGTCTCTGTTTTATAGATTTCGGAATC
AAGTTACAAGCTTTGGGATCGTCAACAAAGTCTATCACAATATCAACTATTTTCTATACTTTATA
AGTTAAACTCGAACTTATGACATGTATGGGCTAGTCTATGTGTTAGTTATTTTGAATGTGTATAT
ATTTAGCCATGCGAAAATGGATTAAACTTGATATTAATGCTTATATGTATTCGGTCTTGACATAG
GCTTGTTAATAAAGTATATTTCATGGTGCATATATGTGTGGTATTTGGCTAAATGGTTCGGCTTG
ATTATTAGGTTAATTGATGATTTAGAAATTTAACATGAGATAAGCATATTCTGGTAAGTATGTTC
TTAGAAAATATGTTTGTGATATTTAGTTAAATGATTCGGCAATGAGAAGTAAAAATTATAATGTA
TAATCGGTTTAACAATTAGCTCATTTATGTAAGTTTGTTTTATGGCATAGTTTGCATTTGTGGAT
GGTAATGAATCAGTTTGTGCAATGATAATGTACTCAAGGATATGGTTTCAGTTGTGACAAGTTTA
TATAAGTTATGTTATGAACATATTATTGCTTGTGTAATTGGTTTATTTGCTACTAAATGTGATAG
AAAAATATGACTATGATCTATGGATGATGAGTTGGTCATTTGAGTAAGTAAAATGCATTTAGTTA
ATA
Found at i:79675747 original size:34 final size:34
Alignment explanation
Indices: 79675696--79675782 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 34
79675686 CAGTGTCGTA
*
79675696 CAGTCTGGG-CTTAAGCCCA-TATCAGTAGCAATAC
1 CAGTATGGGCCTT-AGCCCATTA-CAGTAGCAATAC
* **
79675730 CAGTATGGGCCTTAGCCCATTACAGTAGCAGTTT
1 CAGTATGGGCCTTAGCCCATTACAGTAGCAATAC
* *
79675764 CAGTGTGAGCCTTAGCCCA
1 CAGTATGGGCCTTAGCCCA
79675783 ACTCACTACA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
34 40 0.89
35 5 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTATGGGCCTTAGCCCATTACAGTAGCAATAC
Found at i:79689665 original size:30 final size:30
Alignment explanation
Indices: 79689601--79689658 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 30
79689591 TGAGTAATTA
*
79689601 GGACTAAATTGAAAAAAATGATAATTTGAG
1 GGACTAAATTGAAAAAAATGATAATGTGAG
*
79689631 GGACTAAAATATGAAATAAATGA-AATGT
1 GGACT-AAAT-TGAAAAAAATGATAATGT
79689659 ATGGACTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 8 0.33
32 11 0.46
ACGTcount: A:0.52, C:0.03, G:0.19, T:0.26
Consensus pattern (30 bp):
GGACTAAATTGAAAAAAATGATAATGTGAG
Found at i:79700081 original size:46 final size:47
Alignment explanation
Indices: 79699975--79700096 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
79699965 TGTCTTCGAC
** * *
79699975 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
79700025 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
79700071 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
79700097 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:79700465 original size:30 final size:30
Alignment explanation
Indices: 79700431--79700492 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
79700421 TTCCTTTACT
*
79700431 TAAAC-TTTGCAAAAATTACATTTTTGCCCC
1 TAAACTTTTGC-AAAATTACACTTTTGCCCC
* *
79700461 TAAACTTTTGCATATTTACACTTTTGCCCC
1 TAAACTTTTGCAAAATTACACTTTTGCCCC
79700491 TA
1 TA
79700493 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (30 bp):
TAAACTTTTGCAAAATTACACTTTTGCCCC
Found at i:79703213 original size:597 final size:597
Alignment explanation
Indices: 79702047--79703820 Score: 3102
Period size: 597 Copynumber: 3.0 Consensus size: 597
79702037 GCACGCCCTC
* *
79702047 CAAAGGATGCCAAATATTAGCCATAGTATTCCTAATTGCTAGAAAATTCACCACACTTGCAGTAA
1 CAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTAA
79702112 GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACTGGTATAGAG
66 GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACTGGTATAGAG
* *
79702177 AACGCCTCTTCTTCGCCATCATCTAAACTTAGTCCCGCCAAATCTTGCTCTATCTTCTTACGCAA
131 AACGCCTCTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCAA
* *
79702242 GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGTATGAAAG
196 GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
* * *
79702307 CAAGTAAAATAGGAGAAATCTAAAGAGAAAACAAAACCATAGCGTGTCATAGAAGACGGACAAAA
261 CAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAAA
*
79702372 ACGTGCCACACGGCACACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
326 ACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
*
79702437 CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGA
391 CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGC
*
79702502 AAATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
456 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
79702567 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
521 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
79702632 CCATAGTATTCTT
586 CCATAGTATTC-T
* *
79702645 CAAAGGAGGCCAAATATTAGCCATAGTATTCCTCATTGTTGGAAAATTCACCACACTTGCAGTAA
1 CAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTAA
** *
79702710 GAAAACAACATAGCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACTGGTATAGAG
66 GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACTGGTATAGAG
* * *
79702775 AACGCCTTTTCTTCACCATCATCTAAACTTAGTTCCGCCAAATCTTACTCCATCTTCTTACGCAA
131 AACGCCTCTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCAA
*
79702840 GAAAACAAATGACCAAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
196 GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
* *
79702905 CAAGTAAAACAGGAGAAATCTAAAGAGAAAA-AAAACCACAGCGTGTCATAGAAGACAAAAAAAA
261 CAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAAA
* * * *
79702969 ACGTGCCACACGGTAGACTTCTTATTTATTTTTCTAATAATAATCATAATTAATTAACTCCATTT
326 ACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
* * * *
79703034 CAAATTTGTGGTTTCAAAATTACTGTTCCGACTAGACCTTAATTCAAGATATTACACTCATTTGC
391 CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGC
*
79703099 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAAGCCAAAT
456 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
79703164 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
521 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
79703229 CCATAGTATTCT
586 CCATAGTATTCT
79703241 CTAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTA
1 C-AAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTA
* *
79703306 AGAAAACAACCCACCAAGCAAAAACTAAACATGGCATTTTGTTCTCCCACATCCACCGGTATAGA
65 AGAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACTGGTATAGA
* *
79703371 GAACGCCTCTTCTTCGCCATCATCTAAACTTAGTTACGCCAAATCTTGCTCCATCTTCTTATGCA
130 GAACGCCTCTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCA
*
79703436 AGAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTACAGGGAGCAAGAAA
195 AGAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAA
*
79703501 GTAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAA
260 GCAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAA
* *
79703566 AACGTGCCACACGGCAGACTTCTTATTTGCTTTTCTAATAATAATCATAAATAATTAATTCTATT
325 AACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATT
**
79703631 TCAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCGGGATATTACACTCATTTG
390 TCAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTG
* *
79703696 CACATACACACCGACAATCTTAATGGCATATTTAGGCAACCAAAA-ATCTACAAACATGGCCAAA
455 CACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAA
* *
79703760 TCATGTCATTCCATTATCCACACTCAACATATTTGCAAAATTATATTTTTCAAAACCAAAT
520 TCATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAAT
79703821 CATACCAAAC
Statistics
Matches: 1108, Mismatches: 66, Indels: 5
0.94 0.06 0.00
Matches are distributed among these distances:
596 2 0.00
597 639 0.58
598 467 0.42
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (597 bp):
CAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTAA
GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACTGGTATAGAG
AACGCCTCTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCAA
GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
CAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAAA
ACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGC
ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
CCATAGTATTCT
Found at i:79711228 original size:104 final size:104
Alignment explanation
Indices: 79711048--79711271 Score: 360
Period size: 104 Copynumber: 2.2 Consensus size: 104
79711038 TGTATATAAA
** * *
79711048 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTACGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTACGTGATCCACCATATCTT
*
79711113 TGAAATGTGAAAGGGGGTTGCTATGTTCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
79711152 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTACG-TGATCCACCATATCT
79711216 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
79711256 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
79711272 GATATCCATT
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
104 110 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTACGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:79711323 original size:71 final size:72
Alignment explanation
Indices: 79711190--79711341 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
79711180 TCATTGGTGG
* *
79711190 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
79711255 GAGGGGT
66 GAGGGGT
***
79711262 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
79711326 GAGGGGT
66 GAGGGGT
79711333 TGCTAAGTG
1 TGCTAAGTG
79711342 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:79734261 original size:28 final size:28
Alignment explanation
Indices: 79734229--79734308 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 28
79734219 CATACATGCT
*
79734229 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
79734257 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
79734286 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
79734309 TTTTACAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
28 22 0.47
29 24 0.51
30 1 0.02
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:79734289 original size:29 final size:28
Alignment explanation
Indices: 79734229--79734308 Score: 117
Period size: 28 Copynumber: 2.8 Consensus size: 28
79734219 CATACATGCT
*
79734229 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
*
79734257 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
79734286 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
79734309 TTTTACAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
28 24 0.51
29 23 0.49
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:79734551 original size:16 final size:16
Alignment explanation
Indices: 79734527--79734569 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
79734517 GTAGCCAAAC
*
79734527 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTTCGCA
*
79734543 TTTCAGCTTTTTCGCA
1 TTTCGGCTTTTTCGCA
79734559 TTTCGGCTTTT
1 TTTCGGCTTTT
79734570 ACCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.21, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTTCGCA
Found at i:79747488 original size:47 final size:47
Alignment explanation
Indices: 79747368--79747489 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
79747358 GCATTGGCAC
* * *
79747368 TAAGACAAGGGTACAATGTAAGACCAGGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
79747415 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
79747462 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
79747490 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:79747530 original size:53 final size:53
Alignment explanation
Indices: 79747468--79747675 Score: 247
Period size: 53 Copynumber: 3.9 Consensus size: 53
79747458 TTGGTAAGAT
*
79747468 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTCATAAGGC
* * * *
79747521 AAGGATATCATGTAAGACCATGTCATGACATGGGATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTT-C-ATAAGGC
* * * * *
79747576 AAATG-TCTCATGTAAGACCATTCTAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTCATAAGGC
* * * * *
79747629 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTCA
79747676 AAAAGGAAAA
Statistics
Matches: 127, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
52 3 0.02
53 80 0.63
54 2 0.02
55 39 0.31
56 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (53 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTCATAAGGC
Found at i:79765128 original size:34 final size:34
Alignment explanation
Indices: 79765085--79765152 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
79765075 TCTTATGCAT
79765085 GTTAGATCGATTGGAATTGAATCATGAATGTGAA
1 GTTAGATCGATTGGAATTGAATCATGAATGTGAA
79765119 GTTAGATCGATTGGAATTGAATCATGAATGTGAA
1 GTTAGATCGATTGGAATTGAATCATGAATGTGAA
79765153 ATGATAAGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (34 bp):
GTTAGATCGATTGGAATTGAATCATGAATGTGAA
Found at i:79765925 original size:20 final size:20
Alignment explanation
Indices: 79765900--79765939 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
79765890 AATTAACAGC
79765900 AATTGATTTAGAGTTTTGTA
1 AATTGATTTAGAGTTTTGTA
79765920 AATTGATTTAGAGTTTTGTA
1 AATTGATTTAGAGTTTTGTA
79765940 GCTCTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (20 bp):
AATTGATTTAGAGTTTTGTA
Found at i:79768827 original size:34 final size:33
Alignment explanation
Indices: 79768771--79768842 Score: 99
Period size: 34 Copynumber: 2.2 Consensus size: 33
79768761 TATACATCTT
* *
79768771 TGATACTATACTGAAGTGGGCTAAGGCCCACAC
1 TGATACTATACTGAAGTAGGCTAAAGCCCACAC
* *
79768804 TGATACTATTACTGCATTAGGCTAAAGCCCACAC
1 TGATACTA-TACTGAAGTAGGCTAAAGCCCACAC
79768838 TGATA
1 TGATA
79768843 TTGCGATCGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 8 0.24
34 26 0.76
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (33 bp):
TGATACTATACTGAAGTAGGCTAAAGCCCACAC
Found at i:79782576 original size:40 final size:40
Alignment explanation
Indices: 79782530--79782754 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
79782520 CTTGCACAAG
* * *
79782530 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
79782570 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
79782610 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
79782650 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
79782690 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
79782731 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
79782755 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:79782625 original size:80 final size:80
Alignment explanation
Indices: 79782494--79782754 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
79782484 CTCAAGTAAT
* * * * * * *
79782494 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
79782557 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
79782572 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
79782636 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
79782652 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
79782717 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
79782733 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
79782755 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:79795240 original size:55 final size:55
Alignment explanation
Indices: 79795169--79795293 Score: 153
Period size: 55 Copynumber: 2.3 Consensus size: 55
79795159 TGCAATATAG
* * ** *
79795169 CCGTGATCGAGCCTGCCAAAACAACTCGGGTGTAT-GACACGCCCGTGCGGAAGAA
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCAT-TCGACACGCCCGTGCGGAACAA
* * *
79795224 CCGTGGTCGAGCCTGCCAAAACAACACGGGCATTCGACACGCTCGTGTGGAACAC
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCATTCGACACGCCCGTGCGGAACAA
*
79795279 CCGTGGTCGAACCTG
1 CCGTGGTCGAGCCTG
79795294 TTAAATTAAC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 1 0.02
55 59 0.98
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.15
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAACACGGGCATTCGACACGCCCGTGCGGAACAA
Found at i:79815463 original size:19 final size:19
Alignment explanation
Indices: 79815439--79815481 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
79815429 GCCACACAGG
*
79815439 CGTGTGGGCCCATATGGGT
1 CGTGTGGGCCCACATGGGT
79815458 CGTGTGGGCCCACATGGGT
1 CGTGTGGGCCCACATGGGT
79815477 CGTGT
1 CGTGT
79815482 TATTGGCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.09, C:0.23, G:0.42, T:0.26
Consensus pattern (19 bp):
CGTGTGGGCCCACATGGGT
Found at i:79820504 original size:23 final size:23
Alignment explanation
Indices: 79820478--79820521 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
79820468 ATTAACAAGA
* *
79820478 TGTGATTATGTGTAAGACCATAT
1 TGTGATTACGCGTAAGACCATAT
79820501 TGTGATTACGCGTAAGACCAT
1 TGTGATTACGCGTAAGACCAT
79820522 GTCTGGGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (23 bp):
TGTGATTACGCGTAAGACCATAT
Found at i:79840978 original size:40 final size:40
Alignment explanation
Indices: 79840894--79840986 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
79840884 CTCGGTATCG
**
79840894 CACACTTAGTGCCTCATATAGCCGAAGCTATTCCAACTTG
1 CACACTTAGTGCCTCATATAGCCGAAGCTATTCCAACTCA
* *
79840934 CACACTTAGTGCCAT-TTATAGCCGAAGCTATTTCGAAC-CA
1 CACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCCAACTCA
79840974 CACACTTAGTGCC
1 CACACTTAGTGCC
79840987 GAACATAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 40 0.85
41 7 0.15
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (40 bp):
CACACTTAGTGCCTCATATAGCCGAAGCTATTCCAACTCA
Found at i:79844426 original size:39 final size:39
Alignment explanation
Indices: 79844383--79844535 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
79844373 CCAGACATAT
* * * *
79844383 TTCCAGCACGTAGCCTGTGAATCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
*
79844422 TTCCAGCACATAGCCTGTGGACCTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
* *
79844461 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
* * *
79844500 TTCCAACACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATA
79844536 AACATCACTG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
Found at i:79844428 original size:78 final size:78
Alignment explanation
Indices: 79844355--79844527 Score: 213
Period size: 78 Copynumber: 2.2 Consensus size: 78
79844345 ACCAGCTCGA
* * * * * * *
79844355 AGCCTGCGAGA-CTTTAGCCCAGACATATTTCCAGCACGTAGCCTGTGAATCTTAAGTCCGGTTA
1 AGCCTGCG-GACCTTAAGCCCAGACATAATTCCAGCACATAGCCTGCGAACCCTAAGTCCGGATA
79844419 TAATTCCAGCACAT
65 TAATTCCAGCACAT
* * * *
79844433 AGCCTGTGGACCTTAAGTCCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAT
1 AGCCTGCGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTGCGAACCCTAAGTCCGGATAT
*
79844498 AATTCCAACACAT
66 AATTCCAGCACAT
*
79844511 AGCCTGCGGACCCTAAG
1 AGCCTGCGGACCTTAAG
79844528 TCCGGATAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
77 2 0.03
78 78 0.98
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (78 bp):
AGCCTGCGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTGCGAACCCTAAGTCCGGATAT
AATTCCAGCACAT
Done.