Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 242 of 310
Found at i:79852112 original size:40 final size:40
Alignment explanation
Indices: 79852028--79852249 Score: 229
Period size: 40 Copynumber: 5.5 Consensus size: 40
79852018 TTGAATGCTG
* * *
79852028 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** *
79852067 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79852108 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79852148 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
**
79852189 TCCGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
79852227 AACCGGGCTATGTCCCGAAGGCA
1 -TCCGGGTTAAGTCCCGAAGGCA
79852250 CTTGAACGAG
Statistics
Matches: 156, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 20 0.13
40 101 0.65
41 34 0.22
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:79852242 original size:120 final size:119
Alignment explanation
Indices: 79852028--79852248 Score: 261
Period size: 120 Copynumber: 1.8 Consensus size: 119
79852018 TTGAATGCTG
* *
79852028 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
79852093 GTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
66 GTACGAGTTATTAA-TCCGGGCTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
* * * **
79852148 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGACT-AAATCCGGACTAAGAT-CCGAAGGCA
* *
79852211 -TTGTATGAGTTACTATAA-CCGGGCTATGTCCCGAAGGC
63 TTTGTACGAGTTA-T-TAATCCGGGCTAAGTCCCGAAGGC
79852249 ACTTGAACGA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
120 55 0.65
121 27 0.32
122 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTATTAATCCGGGCTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
Found at i:79854606 original size:39 final size:39
Alignment explanation
Indices: 79854531--79855452 Score: 1729
Period size: 39 Copynumber: 23.6 Consensus size: 39
79854521 ACGAGCTCGA
* * * * * *
79854531 AGCCTGCTGGA-CTTTAGCCCGGACATATTTCTAGCACGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
*
79854570 AGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854609 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
79854648 AGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854687 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854726 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854765 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854804 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854843 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854882 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854921 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854960 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79854999 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855038 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855077 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855116 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855155 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855194 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855233 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855272 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855311 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
79855350 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
79855389 AGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
79855428 AGCCTGCGGACCCTAAGTTCGGATA
1 AGCCTGCGGACCTTAAGTCCGGATA
79855453 AACATCACTG
Statistics
Matches: 870, Mismatches: 12, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
38 3 0.00
39 867 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:79858134 original size:20 final size:20
Alignment explanation
Indices: 79858109--79858149 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
79858099 AGTCATTGGT
79858109 CACCCTTAAACAATCATACA
1 CACCCTTAAACAATCATACA
79858129 CACCCTTAAACAATCATACA
1 CACCCTTAAACAATCATACA
79858149 C
1 C
79858150 TTCCATATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.20
Consensus pattern (20 bp):
CACCCTTAAACAATCATACA
Found at i:79866367 original size:43 final size:43
Alignment explanation
Indices: 79866301--79866459 Score: 196
Period size: 43 Copynumber: 3.7 Consensus size: 43
79866291 AGCATATACA
* *
79866301 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* * * *
79866344 ATGCCACTGTCACAGACGGGGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* * * *
79866386 ATGCCAATGTCCCAGGCGTAGTCTCACACGTAAATC-ATTAGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGT-AATCAAATA-TCG
79866430 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG
79866460 AAAAAACATA
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
42 29 0.30
43 38 0.40
44 29 0.30
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:79866446 original size:86 final size:85
Alignment explanation
Indices: 79866296--79866462 Score: 219
Period size: 86 Copynumber: 2.0 Consensus size: 85
79866286 CGGAAAGCAT
* * * *
79866296 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCACAGAC
1 ATACAATGCCAACGTCCCAGACGTAGTCTCACACGTAATCAAATATCGATGCCAATGTCACAGAC
79866361 GGGGTCTTACACGAAATCAA
66 GGGGTCTTACACGAAATCAA
* * * * *
79866381 ATACGATGCCAATGTCCCAGGCGTAGTCTCACACGTAAATC-ATTAGTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACGTAGTCTCACACGT-AATCAAATA-TCGATGCCAATGTCACAG
*
79866445 ACGTGGTCTTACACGAAA
64 ACGGGGTCTTACACGAAA
79866463 AAACATATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 33 0.47
86 37 0.53
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACGTAGTCTCACACGTAATCAAATATCGATGCCAATGTCACAGAC
GGGGTCTTACACGAAATCAA
Found at i:79873942 original size:44 final size:44
Alignment explanation
Indices: 79873859--79873942 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
79873849 AGCTCATACA
* *
79873859 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATCATAAATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGAAAAACATAAATCG
*
79873903 ATGCCAAGGTCC-AGACGTGGTCTTACACGAAAACACATAA
1 ATGCCAACGTCCTAGACGTGGTCTTACACGAAAA-ACATAA
79873943 CGGATCCTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 20 0.56
44 16 0.44
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (44 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGAAAAACATAAATCG
Found at i:79885337 original size:40 final size:40
Alignment explanation
Indices: 79885282--79885503 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
79885272 TATTCGAATG
* *
79885282 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
79885322 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
79885362 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
79885402 ATATCCGGGCTAAGTCCCGAATGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
79885442 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGATT
*
79885482 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79885504 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 147 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:79893860 original size:40 final size:40
Alignment explanation
Indices: 79893764--79893984 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
79893754 TATTCGAATG
* * *
79893764 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
79893804 A-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
*
79893843 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
79893883 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * *
79893923 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
*
79893963 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79893985 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 50 0.30
40 114 0.68
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:79899606 original size:47 final size:46
Alignment explanation
Indices: 79899506--79899635 Score: 134
Period size: 47 Copynumber: 2.8 Consensus size: 46
79899496 GTACGAATAG
* * * ** *
79899506 TACCTTGATTTGGCTACGGCCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGG-GCATGGTATAGGTACTCCGAGAGAAGT
* *
79899553 TACCTTGATTTGGCTACGGGTCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGG-CATGGTATAGGTACTCCGAGAGAAGT
* **
79899600 TCCCTTGATTTGGCTATAGGCAATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGC-ATGGTATAGGTACT
79899636 TATCTATTGC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 1 0.01
47 69 0.99
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (46 bp):
TACCTTGATTTGGCTACGGGCATGGTATAGGTACTCCGAGAGAAGT
Found at i:79906468 original size:44 final size:44
Alignment explanation
Indices: 79906366--79906523 Score: 167
Period size: 46 Copynumber: 3.5 Consensus size: 44
79906356 GTCGATGCCG
* * * *
79906366 TGTCCCAGACAGGTCATACACTAACACATGTAACCGT-GCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCT---CGTAGCCGATGCA
* * *
79906412 TCTCCCAAACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
*
79906456 TGTCCCAGACATGTCTGACACTAGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGATGCA
*
79906502 TGTCCAAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
79906524 GGCTCTCATA
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
43 3 0.03
44 30 0.32
45 1 0.01
46 61 0.64
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
Found at i:79906546 original size:46 final size:45
Alignment explanation
Indices: 79906496--79906666 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 45
79906486 TCTCGAGGCC
79906496 GATGCATGTCCAAGACATGTCTTACACTGGCTCTCATAATGTGGCT
1 GATGCATGTCCAAGACATGTCTTACACTGGCTCTCATAAT-TGGCT
* * *
79906542 GATGCATTTCCAAGGCATGTCTTACACTAGCCCTCGTC-TCAA-T-GCT
1 GATGCATGTCCAAGACATGTCTTACACT-G-GCTC-TCAT-AATTGGCT
* * * * * *
79906588 GATGCCATGTCCCAGATATGGTTTTTCACTGGCTATCATAATATGGCC
1 GATG-CATGTCCAAGACAT-GTCTTACACTGGCTCTCATAAT-TGGCT
79906636 GATGCATGTTCC-AGACATGTCTTACACTGGC
1 GATGCATG-TCCAAGACATGTCTTACACTGGC
79906667 ACACAAATCT
Statistics
Matches: 99, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
45 4 0.04
46 47 0.47
47 23 0.23
48 21 0.21
49 4 0.04
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (45 bp):
GATGCATGTCCAAGACATGTCTTACACTGGCTCTCATAATTGGCT
Found at i:79906690 original size:94 final size:94
Alignment explanation
Indices: 79906447--79906678 Score: 220
Period size: 94 Copynumber: 2.5 Consensus size: 94
79906437 ACATCTCGTA
* * * * * * * * *
79906447 GCCGACGCATGTCCCAGACATGTCTGACACTAG-CTAACATCTCGAGGCCGATG-CATGTCCAAG
1 GCCGATGCATTTCCAAGACATGTCTTACACTAGCCCAA-ATCTCAATGCTGATGCCATGTCCCAG
* * * * *
79906510 ACAT-GTCTTACACTGGCTCTCATAATGTG
65 ATATGGTTTTTCACTGGCTATCATAATATG
* * ***
79906539 GCTGATGCATTTCCAAGGCATGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAGA
1 GCCGATGCATTTCCAAGACATGTCTTACACTAGCCCAAATCTCAATGCTGATGCCATGTCCCAGA
79906604 TATGGTTTTTCACTGGCTATCATAATATG
66 TATGGTTTTTCACTGGCTATCATAATATG
*
79906633 GCCGATGCATGTTCC-AGACATGTCTTACACTGGCACACAAATCTCA
1 GCCGATGCAT-TTCCAAGACATGTCTTACACTAGC-C-CAAATCTCA
79906679 TGTATTGCCA
Statistics
Matches: 109, Mismatches: 25, Indels: 8
0.77 0.18 0.06
Matches are distributed among these distances:
92 38 0.35
93 13 0.12
94 47 0.43
95 5 0.05
96 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (94 bp):
GCCGATGCATTTCCAAGACATGTCTTACACTAGCCCAAATCTCAATGCTGATGCCATGTCCCAGA
TATGGTTTTTCACTGGCTATCATAATATG
Found at i:79912770 original size:38 final size:38
Alignment explanation
Indices: 79912714--79912842 Score: 195
Period size: 38 Copynumber: 3.4 Consensus size: 38
79912704 CACTCGATAC
*
79912714 ATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
79912752 ATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
79912790 ATATCTGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
79912828 ATATCCGGGCTTAAA
1 ATATCCGGG-TTAAA
79912843 GTTCGACAAG
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 78 0.94
39 5 0.06
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:79918928 original size:124 final size:123
Alignment explanation
Indices: 79918661--79918893 Score: 315
Period size: 124 Copynumber: 1.9 Consensus size: 123
79918651 GAGAATTTTG
* * *
79918661 AAAATGTGCTAGGTATTTATTTGATGGCTTATTATTATATGGTTTAAAAATCATAAGGAAGTATG
1 AAAATGTGATAGGTATTTATGTGATGGCTTATTACTATATGGTTTAAAAATCATAAGGAAGTATG
* * * *
79918726 TCAAATTGCCATTTTTGTTAATAGTGGCCGGCCATATGGTTTAATATGTGAGAATTTT
66 TCAAATTGACATTTTTGTTAATAGTGGCCGGCCATATGGTTTAATATGTGAAAAGTAT
* * *
79918784 GAAAATGTGCTAGGTATTTATGTGTTGGCTTATTACTATATGGTTTAAAAATCATAAGGATGTGC
1 -AAAATGTGATAGGTATTTATGTGATGGCTTATTACTATATGGTTTAAAAATCATAAGGAAGT--
* * *
79918849 ATGTCAAATTGACATTTTT-TTTATAGTGGTCGGCCATGTGGTTTA
63 ATGTCAAATTGACATTTTTGTTAATAGTGGCCGGCCATATGGTTTA
79918894 GTGGTTGAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
124 58 0.59
125 23 0.23
126 18 0.18
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (123 bp):
AAAATGTGATAGGTATTTATGTGATGGCTTATTACTATATGGTTTAAAAATCATAAGGAAGTATG
TCAAATTGACATTTTTGTTAATAGTGGCCGGCCATATGGTTTAATATGTGAAAAGTAT
Found at i:79924276 original size:47 final size:47
Alignment explanation
Indices: 79924205--79924794 Score: 1045
Period size: 47 Copynumber: 12.6 Consensus size: 47
79924195 CCCTTCGGGA
* * * *
79924205 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
79924252 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
79924299 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924346 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924393 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924440 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924487 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924534 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924581 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924628 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79924675 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79924722 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79924769 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
79924795 CACAATTATC
Statistics
Matches: 525, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 525 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:79927253 original size:43 final size:43
Alignment explanation
Indices: 79927192--79927274 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
79927182 AGCGGTCCTA
79927192 AAACCGCTTTCCAACTAGGGTCACTTTAGGGCTGTCACACTTG
1 AAACCGCTTTCCAACTAGGGTCACTTTAGGGCTGTCACACTTG
* *
79927235 AAACCGCTTTCCTACTAGGGTCGCTTTAGGGCTGTCACAC
1 AAACCGCTTTCCAACTAGGGTCACTTTAGGGCTGTCACAC
79927275 CCTTACTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (43 bp):
AAACCGCTTTCCAACTAGGGTCACTTTAGGGCTGTCACACTTG
Found at i:79928140 original size:48 final size:48
Alignment explanation
Indices: 79928020--79928339 Score: 297
Period size: 48 Copynumber: 6.6 Consensus size: 48
79928010 AGGGTAAGAT
* * * * *
79928020 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTTTCATATACTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCTACATAT-CAAG
* * * * **
79928069 TGCCGATGCCATGTTCCAAACATGGTTTTACACTAGCCTACATGTTGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCTACATATCAAG
* *
79928118 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCT-CATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-CTACATATCAAG
* * * * *
79928166 GTCGATGCCATGTTCTAAACATGGTATTACACTAG-CTCACATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCT-ACATATCAAG
* * *
79928214 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATAAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-CTACATATCAAG
* * * * * *
79928262 GCCAATGTCATGTTCCAAAAATGGTCTTACACT-GGCTCACATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCT-ACATATCAAG
* *
79928310 GCCAATGCCATGTCCCAGACATGGTATTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
79928340 CCCAGACATG
Statistics
Matches: 220, Mismatches: 43, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
46 4 0.02
47 1 0.00
48 173 0.79
49 4 0.02
50 38 0.17
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCTACATATCAAG
Found at i:79928220 original size:96 final size:96
Alignment explanation
Indices: 79928020--79928339 Score: 426
Period size: 96 Copynumber: 3.3 Consensus size: 96
79928010 AGGGTAAGAT
* * * *
79928020 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTTTCATATACTAGTGCCGATGCCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-C-AATGCCGATGCCATGTTC
* * **
79928085 CAAACATGGTTTTACACTAGC-CTACATGTTGAG
64 CAAACATGGTATTACACTAGCTC-ACATATCAAG
* * *
79928118 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTTCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
79928183 AACATGGTATTACACTAGCTCACATATCAAG
66 AACATGGTATTACACTAGCTCACATATCAAG
* * * *
79928214 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATGTCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
* * *
79928279 AAAATGGTCTTACACTGGCTCACATATCAAG
66 AACATGGTATTACACTAGCTCACATATCAAG
* *
79928310 GCCAATGCCATGTCCCAGACATGGTATTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
79928340 CCCAGACATG
Statistics
Matches: 197, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
96 155 0.79
97 2 0.01
98 40 0.20
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
AACATGGTATTACACTAGCTCACATATCAAG
Found at i:79928286 original size:144 final size:144
Alignment explanation
Indices: 79928028--79928339 Score: 340
Period size: 144 Copynumber: 2.2 Consensus size: 144
79928018 ATGCCGATGT
* * * ** * * *
79928028 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATACTAGTGCCGATGCCATGTTCCAAACATG
1 CATGTCCCAAACATGGTATTACACTAGCTCACATAT-CAAG-GTCGATGCCATGTCCCAAACATG
* * ** * * * *
79928093 GTTTTACACTAGCCTACATGTTGAGGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTC
64 GTCTTACACTAGCCTACATATAAAGGCCAATGCCATGTCCTAAAAATGGTCTTACACTAGCTCAC
* * *
79928158 ATATCAATGTCGATGC
129 ATATCAAGGCCAATGC
* * *
79928174 CATGTTCTAAACATGGTATTACACTAGCTCACATATCAAGGTCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAAACATGGTATTACACTAGCTCACATATCAAGGTCGATGCCATGTCCCAAACATGGT
* * *
79928239 CTTACACTAGCTCT-CATATAAATGCCAATGTCATGTTCC-AAAAATGGTCTTACACTGGCTCAC
66 CTTACACTAGC-CTACATATAAAGGCCAATGCCATG-TCCTAAAAATGGTCTTACACTAGCTCAC
79928302 ATATCAAGGCCAATGC
129 ATATCAAGGCCAATGC
*
79928318 CATGTCCCAGACATGGTATTAC
1 CATGTCCCAAACATGGTATTAC
79928340 CCCAGACATG
Statistics
Matches: 136, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
144 99 0.73
145 8 0.06
146 29 0.21
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (144 bp):
CATGTCCCAAACATGGTATTACACTAGCTCACATATCAAGGTCGATGCCATGTCCCAAACATGGT
CTTACACTAGCCTACATATAAAGGCCAATGCCATGTCCTAAAAATGGTCTTACACTAGCTCACAT
ATCAAGGCCAATGC
Found at i:79928345 original size:17 final size:17
Alignment explanation
Indices: 79928323--79928356 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79928313 AATGCCATGT
79928323 CCCAGACATGGTATTAC
1 CCCAGACATGGTATTAC
*
79928340 CCCAGACATGGTCTTAC
1 CCCAGACATGGTATTAC
79928357 ACTAGCTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (17 bp):
CCCAGACATGGTATTAC
Found at i:79928418 original size:48 final size:48
Alignment explanation
Indices: 79928340--79928465 Score: 155
Period size: 48 Copynumber: 2.6 Consensus size: 48
79928330 ATGGTATTAC
* *
79928340 CCCAGACATGGTCTTACACTAGCTCTCATATCAATGCGGATGCCATGT
1 CCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCGGATGCCATGT
* * * * *
79928388 TCCAAACATGATCTTACACTGGCT-TACATATCGAGGCTGATGCCATGT
1 CCCAAACATGGTCTTACACTAGCTCT-CATATCAAGGCGGATGCCATGT
* *
79928436 CCCAGACATGGTCTTACACTAGCTCCCATA
1 CCCAAACATGGTCTTACACTAGCTCTCATA
79928466 ACCCTAGTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
47 1 0.02
48 63 0.98
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (48 bp):
CCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCGGATGCCATGT
Found at i:79928431 original size:113 final size:113
Alignment explanation
Indices: 79928227--79928452 Score: 353
Period size: 113 Copynumber: 2.0 Consensus size: 113
79928217 GATGCCATGT
* *
79928227 CCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATGTCATGTTCCAAAAATGGTCTTAC
1 CCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAAAATGATCTTAC
79928292 ACTGGCTCACATATCAAGGCCAATGCCATGTCCCAGACATGGTATTAC
66 ACTGGCTCACATATCAAGGCCAATGCCATGTCCCAGACATGGTATTAC
* ** *
79928340 CCCAGACATGGTCTTACACTAGCTCTCATATCAATGCGGATGCCATGTTCCAAACATGATCTTAC
1 CCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAAAATGATCTTAC
* * ** *
79928405 ACTGGCTTACATATCGAGGCTGATGCCATGTCCCAGACATGGTCTTAC
66 ACTGGCTCACATATCAAGGCCAATGCCATGTCCCAGACATGGTATTAC
79928453 ACTAGCTCCC
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
113 102 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (113 bp):
CCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAAAATGATCTTAC
ACTGGCTCACATATCAAGGCCAATGCCATGTCCCAGACATGGTATTAC
Found at i:79930922 original size:14 final size:14
Alignment explanation
Indices: 79930903--79930931 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79930893 TAAAATTGCA
79930903 AATTCATGCAATTT
1 AATTCATGCAATTT
79930917 AATTCATGCAATTT
1 AATTCATGCAATTT
79930931 A
1 A
79930932 GTACAAACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (14 bp):
AATTCATGCAATTT
Found at i:79931764 original size:2 final size:2
Alignment explanation
Indices: 79931751--79931810 Score: 66
Period size: 2 Copynumber: 29.5 Consensus size: 2
79931741 GAGACTAGTC
* * * * *
79931751 AT AT AT AC AT AT AT AC AT AT AT AC AT AT AT GT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79931793 AT AT GAT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT A
79931811 CATGTCATGA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 45 0.96
3 2 0.04
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.43
Consensus pattern (2 bp):
AT
Found at i:79933498 original size:24 final size:25
Alignment explanation
Indices: 79933471--79933568 Score: 148
Period size: 24 Copynumber: 4.0 Consensus size: 25
79933461 AAGGCTGTCA
79933471 GGAGAAGATTTAGGAGCTGAT-AAG
1 GGAGAAGATTTAGGAGCTGATCAAG
* *
79933495 GGAGAGGATTGAGGAGCTGAT-AAG
1 GGAGAAGATTTAGGAGCTGATCAAG
*
79933519 GGAGAGGATTTAGGAGCTGATCAA-
1 GGAGAAGATTTAGGAGCTGATCAAG
79933543 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGATCAAG
79933568 G
1 G
79933569 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.35, C:0.06, G:0.40, T:0.19
Consensus pattern (25 bp):
GGAGAAGATTTAGGAGCTGATCAAG
Found at i:79937855 original size:758 final size:758
Alignment explanation
Indices: 79936400--79938531 Score: 3842
Period size: 758 Copynumber: 2.8 Consensus size: 758
79936390 TAATCATAGA
79936400 AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
1 AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
79936465 CTAACAGACTTCAAACCACTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTAAC
66 CTAACAGACTTCAAACCACTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTAAC
79936530 TTTAAAAATAATATCTTGAGTTCTGAAACTTGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAG
131 TTTAAAAATAATATCTTGAGTTCTGAAACTTGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAG
79936595 ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGGTTATT
196 ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGGTTATT
79936660 AGTAAAAGTCTCCAAAGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
261 AGTAAAAGTCTCCAAAGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
79936725 TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
326 TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
79936790 CATGAACATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAA
391 CATGAACATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAA
79936855 CAGGGAATCCAGAAATTGCTCTGGCCCTGTTTCACAAGAGTTTAATTATCTCCTAACATACAGCT
456 CAGGGAATCCAGAAATTGCTCTGGCCCTGTTTCACAAGAGTTTAATTATCTCCTAACATACAGCT
79936920 CATATAGTCATTTCTTTTCTTCTATATGAAAATAGACTCATCGAGCTTCGATTACATAATTTATT
521 CATATAGTCATTTCTTTTCTTCTATATGAAAATAGACTCATCGAGCTTCGATTACATAATTTATT
79936985 CATTAATTAATTCCACTCCTACTATTTTTAGTGATTTTCCAATCTCACGTCACTGCTGCTGCCAG
586 CATTAATTAATTCCACTCCTACTATTTTTAGTGATTTTCCAATCTCACGTCACTGCTGCTGCCAG
79937050 CATCTGTTACTAAAGCAACTATGCCTATTTCGTGATTTCTCCTTGATCTAACTAGTAATTCATCA
651 CATCTGTTACTAAAGCAACTATGCCTATTTCGTGATTTCTCCTTGATCTAACTAGTAATTCATCA
79937115 TACATATCACAAATCATGATCATGACTAGCCATCCCAAGGGCT
716 TACATATCACAAATCATGATCATGACTAGCCATCCCAAGGGCT
79937158 AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
1 AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
*
79937223 CTAACAGACTTCAAACCCCTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTAAC
66 CTAACAGACTTCAAACCACTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTAAC
79937288 TTTAAAAATAATATCTTGAGTTCTGAAACTTGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAG
131 TTTAAAAATAATATCTTGAGTTCTGAAACTTGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAG
79937353 ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGGTTATT
196 ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGGTTATT
79937418 AGTAAAAGTCTCCAAAGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
261 AGTAAAAGTCTCCAAAGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
79937483 TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
326 TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
79937548 CATGAACATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAA
391 CATGAACATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAA
79937613 CAGGGAATCCAGAAATTGCTCTGGCCCTGTTTCACAAGAGTTTAATTATCTCCTAACATACAGCT
456 CAGGGAATCCAGAAATTGCTCTGGCCCTGTTTCACAAGAGTTTAATTATCTCCTAACATACAGCT
79937678 CATATAGTCATTTCTTTTCTTCTATATGAAAATAGACTCATCGAGCTTCGATTACATAATTTATT
521 CATATAGTCATTTCTTTTCTTCTATATGAAAATAGACTCATCGAGCTTCGATTACATAATTTATT
79937743 CATTAATTAATTCCACTCCTACTATTTTTAGTGATTTTCCAATCTCACGTCACTGCTGCTGCCAG
586 CATTAATTAATTCCACTCCTACTATTTTTAGTGATTTTCCAATCTCACGTCACTGCTGCTGCCAG
79937808 CATCTGTTACTAAAGCAACTATGCCTATTTCGTGATTTCTCCTTGATCTAACTAGTAATTCATCA
651 CATCTGTTACTAAAGCAACTATGCCTATTTCGTGATTTCTCCTTGATCTAACTAGTAATTCATCA
79937873 TACATATCACAAATCATGATCATGACTAGCCATCCCAAGGGCT
716 TACATATCACAAATCATGATCATGACTAGCCATCCCAAGGGCT
79937916 AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
1 AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
*
79937981 CTAACAGACTTCAAACCACTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTCAC
66 CTAACAGACTTCAAACCACTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTAAC
* * * * *
79938046 TTTAAAAATCATATCTTGAGTTATAAAACTCGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAC
131 TTTAAAAATAATATCTTGAGTTCTGAAACTTGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAG
*
79938111 ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATT
196 ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGGTTATT
* * *
79938176 AGTCAAAGTCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
261 AGTAAAAGTCTCCAAAGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
79938241 TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
326 TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
* * * *
79938306 CATGCACATATGGAATGACTTCTAATTATCTCTGGTTAATTTATAACGAATTTCCAAAGTCGGAA
391 CATGAACATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAA
* * ** * * * ** * * *
79938371 TAGGGAATCTAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAA-TATCTCTTAACATACTG-
456 CAGGGAATCCAGAAATTGCTCTGGCCCTGTTTCACAAG-AGTTTAATTATCTCCTAACATACAGC
* * * * * * * * *
79938434 TCCATAT-GATCGTTTCGTTACTT-TCCTATGAAAATATATTCATCAAGGTTCGTTTACATAATT
520 T-CATATAG-TCATTTCTTTTCTTCT-ATATGAAAATAGACTCATCGAGCTTCGATTACATAATT
* *
79938497 TATTCACTATTTAATTCC-CTTCCTACTATTTTTAG
582 TATTCATTAATTAATTCCAC-TCCTACTATTTTTAG
79938532 NNNNNNNNNN
Statistics
Matches: 1330, Mismatches: 39, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
757 4 0.00
758 1322 0.99
759 4 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (758 bp):
AATCACATTATGTATGATTGTAACACCCCGAACCCGAGGCCGTCGCCGGAGTCGAACACGAGGTG
CTAACAGACTTCAAACCACTTAAAAAAAATTTCCCAGACAAGCTGCCAATCTGCGTACTAGTAAC
TTTAAAAATAATATCTTGAGTTCTGAAACTTGAAATCCAGTTCCGTAAATTTTCCCTGAAACTAG
ACTCATATGTCCATCTACATATTTTTTTATAGAATTTTTGGTTGGGCCAATTAGTACAGGTTATT
AGTAAAAGTCTCCAAAGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTGGGATATC
TCCCTGTACAGGGCTTCATTACTGATGTCGTTTGTTTCTATAGAAACTAGACTCGAAGGGGAATC
CATGAACATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAA
CAGGGAATCCAGAAATTGCTCTGGCCCTGTTTCACAAGAGTTTAATTATCTCCTAACATACAGCT
CATATAGTCATTTCTTTTCTTCTATATGAAAATAGACTCATCGAGCTTCGATTACATAATTTATT
CATTAATTAATTCCACTCCTACTATTTTTAGTGATTTTCCAATCTCACGTCACTGCTGCTGCCAG
CATCTGTTACTAAAGCAACTATGCCTATTTCGTGATTTCTCCTTGATCTAACTAGTAATTCATCA
TACATATCACAAATCATGATCATGACTAGCCATCCCAAGGGCT
Found at i:79949644 original size:18 final size:18
Alignment explanation
Indices: 79949629--79949663 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
79949619 TTGAATTTTT
79949629 TATTATTTAAA-TATTTAA
1 TATT-TTTAAATTATTTAA
79949647 TATTTTTAAATTATTTA
1 TATTTTTAAATTATTTA
79949664 TTGACGTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTTAAATTATTTAA
Found at i:79955593 original size:3 final size:3
Alignment explanation
Indices: 79955585--79955618 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
79955575 AATTAAAAGA
79955585 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
79955619 GAAATTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:79957628 original size:16 final size:18
Alignment explanation
Indices: 79957602--79957634 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
79957592 TTAGTTTAAA
79957602 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
79957619 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
79957635 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:79963590 original size:92 final size:93
Alignment explanation
Indices: 79963463--79963635 Score: 285
Period size: 92 Copynumber: 1.9 Consensus size: 93
79963453 GGCCATAAGT
* * *
79963463 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAAC-CGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79963527 CGAGCTCGGATGCCCAGTTACATCTCTC
66 CGAGCTCGGATGCCCAGTTACATCTCTC
* *
79963555 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79963620 CGAGTTCGGATGCCCA
66 CGAGCTCGGATGCCCA
79963636 AATATCCTAG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCCAGTTACATCTCTC
Found at i:79963622 original size:46 final size:46
Alignment explanation
Indices: 79963455--79963629 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
79963445 TGTAACCCGG
* * *
79963455 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
79963501 CCATAAGTGAAC-CGGACTCAACTCAACGAGCTCGG--ATGCCCAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCA--T
* *** *
79963546 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
79963593 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79963630 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.04
45 27 0.25
46 44 0.41
47 27 0.25
49 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:79963648 original size:46 final size:44
Alignment explanation
Indices: 79963460--79963648 Score: 109
Period size: 46 Copynumber: 4.1 Consensus size: 44
79963450 CCCGGCCATA
* * ** ** **
79963460 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
*
79963505 AAGTGAAC-CGGACTCAACTCAACGAGCTCGGATGCCCAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
79963554 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
*
79963597 AAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
79963644 AGTGA
1 AGTGA
79963649 CATGTCACTT
Statistics
Matches: 112, Mismatches: 15, Indels: 32
0.70 0.09 0.20
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
45 24 0.21
46 43 0.38
47 23 0.21
48 4 0.04
49 8 0.07
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:79969484 original size:104 final size:104
Alignment explanation
Indices: 79969304--79969631 Score: 586
Period size: 104 Copynumber: 3.2 Consensus size: 104
79969294 TGTATATAAA
** * * * *
79969304 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
79969368 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
79969408 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
79969473 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
79969512 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
79969577 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
79969616 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
79969632 GATATCCATT
Statistics
Matches: 217, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
104 216 1.00
105 1 0.00
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:79969683 original size:71 final size:71
Alignment explanation
Indices: 79969550--79969772 Score: 392
Period size: 71 Copynumber: 3.1 Consensus size: 71
79969540 TCATTGGTGG
*** * *
79969550 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
79969615 GAGGGGT
65 GAGGGGT
79969622 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
79969687 AGGGGT
66 AGGGGT
79969693 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
79969758 AGGGGT
66 AGGGGT
79969764 TGCTAAGTG
1 TGCTAAGTG
79969773 ATGATTCCCC
Statistics
Matches: 146, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 116 0.79
72 30 0.21
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGT
Found at i:79973437 original size:24 final size:24
Alignment explanation
Indices: 79973401--79973447 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
79973391 ATGAGCTTTG
* *
79973401 AATCGGCATGCTCTTACAAGCTGT
1 AATCGGCAAGCTCATACAAGCTGT
* *
79973425 AATCGGTAAGCTCATACGAGCTG
1 AATCGGCAAGCTCATACAAGCTG
79973448 AGTAACAGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
AATCGGCAAGCTCATACAAGCTGT
Found at i:79973461 original size:25 final size:25
Alignment explanation
Indices: 79973430--79973523 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
79973420 GCTGTAATCG
79973430 GTAAGCTCATACGAGCTGAGTAACA
1 GTAAGCTCATACGAGCTGAGTAACA
* * *
79973455 GTAAGCTCATGCGAGCTAAATAAC-
1 GTAAGCTCATACGAGCTGAGTAACA
*
79973479 GATAAGCTCATATGAGCTGAG-AATCA
1 G-TAAGCTCATACGAGCTGAGTAA-CA
79973505 GTAAGCTC-TCACGAGCTGA
1 GTAAGCTCAT-ACGAGCTGA
79973524 AGTTGGTAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
24 4 0.07
25 52 0.91
26 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.21
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAGTAACA
Found at i:79977247 original size:19 final size:19
Alignment explanation
Indices: 79977223--79977275 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
79977213 AAATGAGAAT
79977223 CAGAATTAGAATCAGGTGA
1 CAGAATTAGAATCAGGTGA
* *
79977242 CAGAATCAGAATTAGGTGA
1 CAGAATTAGAATCAGGTGA
79977261 CAGAATTAGAATCAG
1 CAGAATTAGAATCAG
79977276 AATCAATATC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (19 bp):
CAGAATTAGAATCAGGTGA
Found at i:79977277 original size:31 final size:31
Alignment explanation
Indices: 79977242--79977309 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
79977232 AATCAGGTGA
* * * *
79977242 CAGAATCAGA-ATTAGGTGACAGAATTAGAAT
1 CAGAATCA-ATATCAGGTAACAGAATGAAAAT
79977273 CAGAATCAATATCAGGTAACAGAATGAAAAT
1 CAGAATCAATATCAGGTAACAGAATGAAAAT
79977304 CAGAAT
1 CAGAAT
79977310 GTGAATGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGAATCAATATCAGGTAACAGAATGAAAAT
Found at i:79977278 original size:12 final size:12
Alignment explanation
Indices: 79977197--79977278 Score: 60
Period size: 12 Copynumber: 6.7 Consensus size: 12
79977187 AAGAAACATT
*
79977197 ATCAGAACTAGA
1 ATCAGAATTAGA
* *
79977209 ATCAAAATGAGA
1 ATCAGAATTAGA
79977221 ATCAGAATTAGA
1 ATCAGAATTAGA
* *
79977233 ATCAG-GTGACAGA
1 ATCAGAAT--TAGA
79977246 ATCAGAATTAG-
1 ATCAGAATTAGA
*
79977257 GTGACAGAATTAGA
1 AT--CAGAATTAGA
79977271 ATCAGAAT
1 ATCAGAAT
79977279 CAATATCAGG
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
11 2 0.04
12 32 0.60
13 17 0.32
14 2 0.04
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.21
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:79977821 original size:27 final size:27
Alignment explanation
Indices: 79977791--79978065 Score: 289
Period size: 27 Copynumber: 10.2 Consensus size: 27
79977781 AACACCCTAG
* *
79977791 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACGGTAATTTTATAAATCGA
**
79977818 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
79977845 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *** *
79977872 GGATAAAATAATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
79977899 GGGTAAAACAGTAATTTTTTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
79977926 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
79977953 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
79977980 GGGTAAAACAGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
79978007 GGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTAAAACGGTAATTTTATAAATCGA
**** * *
79978034 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
79978061 GGGTA
1 GGGTA
79978066 TTTCAGTAAT
Statistics
Matches: 207, Mismatches: 41, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 207 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTATAAATCGA
Found at i:79978076 original size:81 final size:81
Alignment explanation
Indices: 79977791--79978038 Score: 370
Period size: 81 Copynumber: 3.1 Consensus size: 81
79977781 AACACCCTAG
* * * * *
79977791 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGA
1 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGG
79977856 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * *
79977872 GGATAAAATAATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTTTAAATCGAGGGTAAAACGG
1 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGG
*
79977937 TAATTCTATAAATTGA
66 TAATTCTATAAATCGA
* * *
79977953 GGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGG
1 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGG
* *
79978018 TAATTCTGTAAATCGG
66 TAATTCTATAAATCGA
79978034 GGGTA
1 GGGTA
79978039 CTTTGGTAAT
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 149 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGG
TAATTCTATAAATCGA
Found at i:79978198 original size:54 final size:52
Alignment explanation
Indices: 79978033--79978187 Score: 184
Period size: 54 Copynumber: 2.9 Consensus size: 52
79978023 CTGTAAATCG
* ** *
79978033 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCA
1 GGGGTATTTTGGTAATTTTAC-AGTCGAGGGTATTTTGGTAATTTTACAAA-CA
* ** *
79978087 GAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAGTCGA-GGGTATTTTGGTAATTTTACAAAC-A
*
79978141 GGGGTATTTTGGTAAATTTACAGGTCGAGGGTATTTTGGTAATTTTA
1 GGGGTATTTTGGTAATTTTACA-GTCGAGGGTATTTTGGTAATTTTA
79978188 TCCTACAGGG
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 4 0.05
54 79 0.93
55 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.39
Consensus pattern (52 bp):
GGGGTATTTTGGTAATTTTACAGTCGAGGGTATTTTGGTAATTTTACAAACA
Found at i:79978198 original size:81 final size:81
Alignment explanation
Indices: 79978033--79978187 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
79978023 CTGTAAATCG
* * *
79978033 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTG
1 GGGGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTG
79978098 GTAATTTTACAAACTA
66 GTAATTTTACAAACTA
** **
79978114 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAAATTT-ACAGGTC-GAGGGTATT
1 GGGGTATTTTGGTAATTTTAC-AACTAGAGGGTATTTCAGT-AATTTCACAAATCAGA-GGTATT
79978176 TTGGTAATTTTA
63 TTGGTAATTTTA
79978188 TCCTACAGGG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 2 0.03
81 53 0.83
82 9 0.14
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.39
Consensus pattern (81 bp):
GGGGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTG
GTAATTTTACAAACTA
Found at i:79978203 original size:27 final size:27
Alignment explanation
Indices: 79978033--79978187 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
79978023 CTGTAAATCG
* * *
79978033 GGGGTACTTTGGTAATTTTAC-AAGTC
1 GGGGTATTTTGGTAATTTTACAAACTA
** *
79978059 GAGGGTATTTCAGTAATTTCACAAA-TCA
1 G-GGGTATTTTGGTAATTTTACAAACT-A
*
79978087 GAGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
79978114 GGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
* ** *
79978141 GGGGTATTTTGGTAAATTTAC-AGGTC
1 GGGGTATTTTGGTAATTTTACAAACTA
79978167 GAGGGTATTTTGGTAATTTTA
1 G-GGGTATTTTGGTAATTTTA
79978188 TCCTACAGGG
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.04
27 101 0.93
28 4 0.04
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.39
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACTA
Found at i:79978219 original size:27 final size:27
Alignment explanation
Indices: 79978179--79978249 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
79978169 GGGTATTTTG
* *
79978179 GTAATTTTATCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* * *
79978206 GTACTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
*
79978233 GTAATTCTAGCCTACAG
1 GTAATTCTACCCTACAG
79978250 ATACGAGATT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:79983833 original size:40 final size:40
Alignment explanation
Indices: 79983775--79984089 Score: 477
Period size: 40 Copynumber: 7.9 Consensus size: 40
79983765 TGAGAGTTAT
79983775 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
79983815 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
79983855 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
79983895 ATGTATCCAGGATAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
79983935 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
79983975 ATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
79984015 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
79984055 TTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
79984090 CGGTGATGTG
Statistics
Matches: 250, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:79983911 original size:80 final size:80
Alignment explanation
Indices: 79983776--79984094 Score: 530
Period size: 80 Copynumber: 4.0 Consensus size: 80
79983766 GAGAGTTATA
79983776 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
* *
79983841 CATTCGTGTTAGTGT
66 CATTCGTGCTGGTGT
* *
79983856 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGATAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
79983921 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
*
79983936 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
79984001 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* * ** * *
79984016 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCGGGCTAAGTCCTGAAGGG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
*
79984081 CATTCGTGCCGGTG
66 CATTCGTGCTGGTG
79984095 ATGTGTAATC
Statistics
Matches: 224, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 224 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTGGTGT
Found at i:79984215 original size:97 final size:97
Alignment explanation
Indices: 79984049--79984242 Score: 388
Period size: 97 Copynumber: 2.0 Consensus size: 97
79984039 AGCATTCGTG
79984049 CTGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGTGTAATCAGGCCTTCA
1 CTGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGTGTAATCAGGCCTTCA
79984114 TGCCTAGCAGGCTTAATGCCGGTGATTCGAGC
66 TGCCTAGCAGGCTTAATGCCGGTGATTCGAGC
79984146 CTGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGTGTAATCAGGCCTTCA
1 CTGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGTGTAATCAGGCCTTCA
79984211 TGCCTAGCAGGCTTAATGCCGGTGATTCGAGC
66 TGCCTAGCAGGCTTAATGCCGGTGATTCGAGC
79984243 AAAGTTTAAG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.27
Consensus pattern (97 bp):
CTGGTGTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGTGATGTGTAATCAGGCCTTCA
TGCCTAGCAGGCTTAATGCCGGTGATTCGAGC
Found at i:79984394 original size:25 final size:25
Alignment explanation
Indices: 79984355--79984409 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
79984345 TGTGTAATAA
79984355 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
79984380 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
79984405 CGAAT
1 CGAAT
79984410 TCTTTAACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:79987667 original size:47 final size:47
Alignment explanation
Indices: 79987615--79988114 Score: 802
Period size: 47 Copynumber: 10.6 Consensus size: 47
79987605 GATAATTGTG
* * *
79987615 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
79987662 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
* *
79987709 ATGTGAAAGTGGATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
79987756 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
79987805 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
79987852 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
79987899 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
* *
79987948 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
* *
79987995 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
* * * * *
79988042 ATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
79988089 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
79988115 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 336 0.79
49 89 0.21
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:79987753 original size:22 final size:22
Alignment explanation
Indices: 79987678--79987753 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
79987668 AAGTGTATAT
*
79987678 ATGTGATAAGGCCGAATGGCCG
1 ATGTGATAAGGCCGAATGGCCA
* * **
79987700 ATGTGATGAATG-TGAAAGTGGATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
79987724 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
79987747 ATGTGAT
1 ATGTGAT
79987754 GAATGTGAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 15 0.38
23 9 0.22
24 8 0.20
25 8 0.20
ACGTcount: A:0.32, C:0.11, G:0.33, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:79987769 original size:143 final size:143
Alignment explanation
Indices: 79987615--79988114 Score: 855
Period size: 143 Copynumber: 3.5 Consensus size: 143
79987605 GATAATTGTG
79987615 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
79987678 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGGATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
79987743 GCCAATGTGATGA
131 GCCAATGTGATGA
79987756 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
79987821 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
79987886 GCCAATGTGATGA
131 GCCAATGTGATGA
79987899 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
79987964 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
79988029 GCCGATGTGATGA
131 GCCAATGTGATGA
* * * * * * *
79988042 ATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
79988105 ATGTGATAAG
66 ATGTGATAAG
79988115 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 60 0.17
142 2 0.01
143 282 0.82
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:79987904 original size:190 final size:188
Alignment explanation
Indices: 79987615--79988114 Score: 838
Period size: 190 Copynumber: 2.6 Consensus size: 188
79987605 GATAATTGTG
* *
79987615 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
79987680 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGGATATATGTGATAAGGCCGAATGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
*
79987745 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 CAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
79987805 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
79987870 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATG
*
79987935 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
129 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
79987995 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
79988060 GTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
79988115 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
188 14 0.05
190 235 0.80
192 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:79990310 original size:38 final size:38
Alignment explanation
Indices: 79990246--79990318 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
79990236 AATCCGAGTT
*
79990246 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCTGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCTGG
* *
79990284 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCC
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCC
79990319 GGATTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCTGG
Found at i:79992519 original size:40 final size:40
Alignment explanation
Indices: 79992458--79992709 Score: 321
Period size: 40 Copynumber: 6.3 Consensus size: 40
79992448 CATTTGAATG
* *
79992458 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
79992498 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
79992538 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
79992578 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
79992618 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
79992658 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
79992698 ATATCC-GGCTAA
1 ATATCCGGGCTAA
79992710 ATTCCGAAGA
Statistics
Matches: 192, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 7 0.04
40 182 0.95
41 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:79994300 original size:40 final size:40
Alignment explanation
Indices: 79994112--79994288 Score: 255
Period size: 40 Copynumber: 4.4 Consensus size: 40
79994102 TCCGACTGGA
*
79994112 CTAAGTGCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
* * * *
79994152 CTAAATCCCAAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
* *
79994192 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
* * *
79994232 CTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
*
79994272 CTAGGTCCCGAAGAGCA
1 CTAAGTCCCGAAGAGCA
79994289 ATCATGCTGG
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
Found at i:79997514 original size:84 final size:84
Alignment explanation
Indices: 79997373--79997539 Score: 307
Period size: 84 Copynumber: 2.0 Consensus size: 84
79997363 AGAAATTTGA
79997373 TTCGTAGTGAAGAGTGGTCAGATTAGTCAAACAGTGAAACAGGGGAAACTTTAAGAAAAAGCTGG
1 TTCGTAGTGAAGAGTGGTCAGATTAGTCAAACAGTGAAACAGGGGAAACTTTAAGAAAAAGCTGG
*
79997438 TATTGATTGGCCAAACCTG
66 TATTGATTGGACAAACCTG
* *
79997457 TTCGTAGTGAAGAGTGGTCAGATTAGTCAAACAGTGAAACAGGGGAAATTTTAAGAAAAATCTGG
1 TTCGTAGTGAAGAGTGGTCAGATTAGTCAAACAGTGAAACAGGGGAAACTTTAAGAAAAAGCTGG
79997522 TATTGATTGGACAAACCT
66 TATTGATTGGACAAACCT
79997540 AAAATTCTGA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (84 bp):
TTCGTAGTGAAGAGTGGTCAGATTAGTCAAACAGTGAAACAGGGGAAACTTTAAGAAAAAGCTGG
TATTGATTGGACAAACCTG
Found at i:79999692 original size:17 final size:19
Alignment explanation
Indices: 79999650--79999693 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
79999640 ATGAAATTTT
*
79999650 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
79999669 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
79999687 AA-TATTA
1 AATTATTA
79999694 CCGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:79999800 original size:15 final size:14
Alignment explanation
Indices: 79999776--79999807 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
79999766 TTAGATATAT
79999776 TTATAAAATTATTA
1 TTATAAAATTATTA
79999790 TTATAATAATTATTA
1 TTATAA-AATTATTA
79999805 TTA
1 TTA
79999808 GATAGGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATAAAATTATTA
Found at i:80000778 original size:15 final size:15
Alignment explanation
Indices: 80000753--80000811 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
80000743 GGATTCAGTT
*
80000753 TTTTTTCTTCTTCTA
1 TTTTCTCTTCTTCTA
* * *
80000768 TTTTCTTTTCTTTTC
1 TTTTCTCTTCTTCTA
* *
80000783 TCTTCTCTTCATCTA
1 TTTTCTCTTCTTCTA
*
80000798 CTTTCTCTTCTTCT
1 TTTTCTCTTCTTCT
80000812 TTTCCTCCAT
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTCTCTTCTTCTA
Found at i:80001796 original size:17 final size:17
Alignment explanation
Indices: 80001767--80001799 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80001757 TTACGGGTTA
80001767 ATAAATAATAAAAATAT
1 ATAAATAATAAAAATAT
80001784 ATAATATAA-AAAAATA
1 ATAA-ATAATAAAAATA
80001800 GGCAAAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAAATAATAAAAATAT
Found at i:80006204 original size:58 final size:56
Alignment explanation
Indices: 80006062--80006296 Score: 355
Period size: 56 Copynumber: 4.2 Consensus size: 56
80006052 TTGTGATCAT
*
80006062 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTTATATATGTGTAC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTAC
** *
80006118 GAGTAAGACTGCGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTAC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTAC
* *
80006174 GAGTAAGAGACCGCGTCTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTAC
1 GAGT-A-AGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTAC
* * * *
80006232 GAGTAAGACCACGTTTAAAACATTGGCATCGATAT-TGATTCTGATATATATGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTAC
80006287 GAGTAAGACC
1 GAGTAAGACC
80006297 CTGTTTGGGA
Statistics
Matches: 164, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
55 28 0.17
56 82 0.50
57 2 0.01
58 52 0.32
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33
Consensus pattern (56 bp):
GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTAC
Found at i:80006213 original size:114 final size:113
Alignment explanation
Indices: 80006067--80006294 Score: 357
Period size: 114 Copynumber: 2.0 Consensus size: 113
80006057 ATCATGAGTA
* * **
80006067 AGACCACGTTTAATACGTTGGCATCGATATGTGATTCTTATATATGTGTACGAGTAAGACTGCGT
1 AGACCACGTCTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCACGT
* ** *
80006132 TTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAG
66 TTAAAACATTGGCATCGATAT-TGATTCTGATATATATGTACGAGTAAG
*
80006181 AGACCGCGTCTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCACGT
1 AGACCACGTCTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCACGT
*
80006246 TTAAAACATTGGCATCGATATTGATTCTGATATATATGTGCGAGTAAG
66 TTAAAACATTGGCATCGATATTGATTCTGATATATATGTACGAGTAAG
80006294 A
1 A
80006295 CCCTGTTTGG
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
113 26 0.25
114 78 0.75
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (113 bp):
AGACCACGTCTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCACGT
TTAAAACATTGGCATCGATATTGATTCTGATATATATGTACGAGTAAG
Found at i:80006561 original size:44 final size:44
Alignment explanation
Indices: 80006511--80006595 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
80006501 GGTTATTTGT
*
80006511 TAGGTGTTATAAAATGATAAAAACAAATATATGTATATGAACTC
1 TAGGTGTTATAAAATGATAAAAACAAATACATGTATATGAACTC
*
80006555 TAGGTGTTATAAAATGATGAAAACAAATACATGTATATGAA
1 TAGGTGTTATAAAATGATAAAAACAAATACATGTATATGAA
80006596 ATTATGTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (44 bp):
TAGGTGTTATAAAATGATAAAAACAAATACATGTATATGAACTC
Found at i:80011495 original size:40 final size:40
Alignment explanation
Indices: 80011447--80011612 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
80011437 GGACTAAGAT
*
80011447 CCGAAGGCATTTGTGCTA-TTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTT-ACTATATCCGGGCTAAGTC
80011487 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
80011527 CCAAAGCCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
80011567 CCGAAGGCATTTGTGCGAGTTGCTATATTC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
80011606 CCGAAGG
1 CCGAAGG
80011613 TACTTGGGTT
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:80013844 original size:21 final size:21
Alignment explanation
Indices: 80013815--80013865 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
80013805 TGCAAGGTAG
80013815 GTATGTCATTTCCCATGATAA
1 GTATGTCATTTCCCATGATAA
* *
80013836 GTTTGTCATTTCCTATGATAA
1 GTATGTCATTTCCCATGATAA
80013857 GTATGTCAT
1 GTATGTCAT
80013866 CCACATACAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (21 bp):
GTATGTCATTTCCCATGATAA
Found at i:80015598 original size:39 final size:39
Alignment explanation
Indices: 80015543--80015688 Score: 256
Period size: 39 Copynumber: 3.7 Consensus size: 39
80015533 TTCCAACCCA
* * *
80015543 AATGCCCTCGGAACTTAGCCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
80015582 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
80015621 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
80015660 AATGCCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
80015689 ATCTCACGCA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 102 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:80030691 original size:6 final size:6
Alignment explanation
Indices: 80030673--80030854 Score: 133
Period size: 6 Copynumber: 29.3 Consensus size: 6
80030663 AAGAAACATT
*
80030673 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
80030722 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
80030773 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
80030821 ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
80030855 GTGAATGCAA
Statistics
Matches: 140, Mismatches: 18, Indels: 36
0.72 0.09 0.19
Matches are distributed among these distances:
5 10 0.07
6 104 0.74
7 21 0.15
8 5 0.04
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:80030694 original size:18 final size:18
Alignment explanation
Indices: 80030673--80030854 Score: 133
Period size: 19 Copynumber: 9.8 Consensus size: 18
80030663 AAGAAACATT
80030673 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
80030691 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
80030708 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
*
80030728 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
80030747 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
80030765 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
*
80030784 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
80030804 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
*
80030821 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
*
80030840 ATCAAAAATCAGAAT
1 ATC-AGAATCAGAAT
80030855 GTGAATGCAA
Statistics
Matches: 130, Mismatches: 17, Indels: 33
0.72 0.09 0.18
Matches are distributed among these distances:
17 7 0.05
18 48 0.37
19 61 0.47
20 14 0.11
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:80030720 original size:31 final size:31
Alignment explanation
Indices: 80030682--80030854 Score: 301
Period size: 31 Copynumber: 5.5 Consensus size: 31
80030672 TATCAGAACT
* * *
80030682 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
80030713 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
80030744 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
80030775 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
80030806 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
80030837 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
80030855 GTGAATGCAA
Statistics
Matches: 138, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
31 127 0.92
32 11 0.08
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:80031033 original size:27 final size:26
Alignment explanation
Indices: 80030991--80031092 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
80030981 GCTCAGTTAT
* *
80030991 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
80031018 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
80031044 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
80031072 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
80031093 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:80031279 original size:22 final size:22
Alignment explanation
Indices: 80031251--80031315 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
80031241 GCAAATACGT
*
80031251 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
80031273 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
80031295 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
80031316 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:80031799 original size:27 final size:27
Alignment explanation
Indices: 80031742--80032691 Score: 1625
Period size: 27 Copynumber: 35.3 Consensus size: 27
80031732 GGGGCAAAAT
* * * *
80031742 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80031768 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80031795 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80031822 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80031849 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80031876 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80031903 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80031930 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80031957 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80031984 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80032011 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
80032038 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032065 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032092 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80032119 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032146 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032173 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032200 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032227 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032254 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032281 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032308 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032335 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032362 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032389 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80032416 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80032443 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80032470 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80032497 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80032524 GTTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80032551 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80032578 GGTAATTCTACCCTACAGGAGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80032605 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80032632 AGTAATTCTACCTTACA-GGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80032658 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80032685 AGTAATT
1 GGTAATT
80032692 TTATAATTCA
Statistics
Matches: 876, Mismatches: 46, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 0.04
27 841 0.96
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80032704 original size:27 final size:27
Alignment explanation
Indices: 80032674--80032749 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
80032664 TCTACCCTAT
* * **
80032674 AGGGGTATTTCAGTAATTTTATAATTC
1 AGGGGTATTTTAGTAATTTTACAAACC
80032701 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACC
*
80032728 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTAGTAATTTTAC
80032750 TGATCGAGGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTACAAACC
Found at i:80032760 original size:27 final size:27
Alignment explanation
Indices: 80032674--80032774 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
80032664 TCTACCCTAT
** * **
80032674 AGGGGTATTTCAGTAATTTTATAATTC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
80032701 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** *
80032728 AGGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAACC
80032755 -GAGGGTATTTTGGTAATTTT
1 AG-GGGTATTTTGGTAATTTT
80032775 GTAAACTAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 64 0.98
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.44
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:80032786 original size:27 final size:26
Alignment explanation
Indices: 80032676--80032806 Score: 91
Period size: 27 Copynumber: 4.9 Consensus size: 26
80032666 TACCCTATAG
* * * *
80032676 GGGTATTTCAGTAATTTTATAATTCAG
1 GGGTATTTTAGTAATTTTGTAA-ACAA
** *
80032703 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTGTAAA-CAA
* * * * *
80032730 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTAGTAATTTT-GTAAACAA
*
80032757 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTAGTAATTTTGTAAAC-AA
* *
80032784 GGGTATTTCAATAATTTTGTAAA
1 GGGTATTTTAGTAATTTTGTAAA
80032807 TCGAGGATAA
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
26 3 0.04
27 80 0.95
28 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.43
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTTGTAAACAA
Found at i:80032810 original size:54 final size:54
Alignment explanation
Indices: 80032676--80032812 Score: 143
Period size: 54 Copynumber: 2.5 Consensus size: 54
80032666 TACCCTATAG
* *
80032676 GGGTATTTCAGTAATTTTATAATTC-AGGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTATAAATCGA-GGGTATTTTAGTAATTTTACAAACCAA
** * * ** *
80032730 GGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTCAGTAATTTTA-TAAATCGAGGGTATTTTAGTAATTTTACAAACCAA
* *
80032784 GGGTATTTCAATAATTTTGTAAATCGAGG
1 GGGTATTTCAGTAATTTTATAAATCGAGG
80032813 ATAAAATAGT
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
53 1 0.02
54 63 0.95
55 2 0.03
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAACCAA
Found at i:80032825 original size:27 final size:27
Alignment explanation
Indices: 80032803--80033017 Score: 308
Period size: 27 Copynumber: 8.0 Consensus size: 27
80032793 AATAATTTTG
* *
80032803 TAAATCGAGGATAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
80032830 TAAATCGAGGGTAAAATGGTTATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
80032857 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
80032884 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
80032911 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* * * *
80032938 TAAATCTAGAGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
**
80032965 TAAATCGAGGGTAAAACAGTAATT-T-
1 TAAATCGAGGGTAAAATGGTAATTCTA
**
80032990 TGTATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
80033017 T
1 T
80033018 CTTATTTCAG
Statistics
Matches: 169, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
25 20 0.12
26 2 0.01
27 147 0.87
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:80033060 original size:27 final size:25
Alignment explanation
Indices: 80033030--80033114 Score: 62
Period size: 27 Copynumber: 3.2 Consensus size: 25
80033020 TATTTCAGTG
80033030 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* * * *
80033057 ATTTCATAAATTGGGGGTACTTTGGTA
1 ATTTTACAAA-TCGAGGTA-TTTGGTA
* *
80033084 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
80033111 ATTT
1 ATTT
80033115 GGTAAACTAA
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
26 5 0.11
27 32 0.73
28 7 0.16
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:80039529 original size:11 final size:11
Alignment explanation
Indices: 80039515--80039539 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80039505 TTCAACTAAT
80039515 CATGAACTCAC
1 CATGAACTCAC
80039526 CATGAACTCAC
1 CATGAACTCAC
80039537 CAT
1 CAT
80039540 TTCATGGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.08, T:0.20
Consensus pattern (11 bp):
CATGAACTCAC
Found at i:80045303 original size:46 final size:46
Alignment explanation
Indices: 80045236--80045411 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
80045226 TGTAACCCGC
* *
80045236 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
80045282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* *
80045332 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
80045375 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
80045412 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 62 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:80045356 original size:93 final size:93
Alignment explanation
Indices: 80045243--80045414 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80045233 CGCCCATAAG
* *
80045243 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80045308 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
80045336 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
80045401 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
80045415 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:80048413 original size:27 final size:27
Alignment explanation
Indices: 80048383--80048560 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
80048373 ATATTGAGCC
* * * *
80048383 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
80048410 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80048437 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
80048465 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
80048492 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
80048519 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80048546 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80048561 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:80048522 original size:82 final size:81
Alignment explanation
Indices: 80048404--80048559 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
80048394 TGCTATATAA
* *
80048404 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
80048469 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
80048486 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
80048550 CACTTAGTGC
65 CACTTAGTGC
80048560 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80050993 original size:115 final size:115
Alignment explanation
Indices: 80050791--80051019 Score: 377
Period size: 115 Copynumber: 2.0 Consensus size: 115
80050781 ACTTGATTGA
* * *
80050791 AAACTATTGTTGTAAGCGAATTCAATCAAAGGTAAATACCGTTCCCATGAACTACTGAACTCGAG
1 AAACTATTGTTGTAAGCGAATTCAATCAAAGGTAAATACCGTTCCCATGAACCACTAAACTCAAG
*
80050856 GATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCTCTCGGATG
66 GATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGATG
* *
80050906 AAACTATTGTTGTAAGCGAATTCGATCAAAGGTACATACCGTTCCCATGAACCACTAAACTCAAG
1 AAACTATTGTTGTAAGCGAATTCAATCAAAGGTAAATACCGTTCCCATGAACCACTAAACTCAAG
* * *
80050971 GATGCAGCATCTCAGCATATCCTCGAGTATCTGAATTATCCGCTCGGAT
66 GATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGAT
80051020 TGACCATCGG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 105 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (115 bp):
AAACTATTGTTGTAAGCGAATTCAATCAAAGGTAAATACCGTTCCCATGAACCACTAAACTCAAG
GATGCAACATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGATG
Found at i:80051322 original size:53 final size:53
Alignment explanation
Indices: 80051242--80051347 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
80051232 CTTAGTTAGT
* * *
80051242 CTATCGACAACAACCCATATCGCATCCTTCTTACTTGCTGACAAGGGCAGTCC
1 CTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCGGACAAGGGCAGTCC
*
80051295 CTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCGGACAATGGCAGTCC
1 CTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCGGACAAGGGCAGTCC
80051348 GGACACAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (53 bp):
CTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCGGACAAGGGCAGTCC
Found at i:80052072 original size:53 final size:53
Alignment explanation
Indices: 80051991--80052102 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 53
80051981 ATCCGAAAAT
* * * *
80051991 ACATGGCACTTTTCACCAAATAAGTAATGTCGCCATATTTTTAATGCAAATAC
1 ACATGGCACTTTTCACCAAACAAATAATGTCGCCATATTTTCAATGCAAACAC
*
80052044 ACATGGCACTTCTT-GCCAAACAAATAATGTCGCCATATTTTCAATGCAAACAC
1 ACATGGCACTT-TTCACCAAACAAATAATGTCGCCATATTTTCAATGCAAACAC
80052097 A-ATGGC
1 ACATGGC
80052103 GGCTAGTTCG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
52 5 0.09
53 46 0.87
54 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (53 bp):
ACATGGCACTTTTCACCAAACAAATAATGTCGCCATATTTTCAATGCAAACAC
Found at i:80053195 original size:40 final size:40
Alignment explanation
Indices: 80053151--80053229 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
80053141 GTGCCATACA
*
80053151 ATACGGAGCTATCGAAATTGGCATAGTTCCAGGTACAAGG
1 ATACGGAGCGATCGAAATTGGCATAGTTCCAGGTACAAGG
*
80053191 ATACGGAGCGATCGAAATTGGCGTAGTTCCAGGTACAAG
1 ATACGGAGCGATCGAAATTGGCATAGTTCCAGGTACAAG
80053230 CTCAATGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.22
Consensus pattern (40 bp):
ATACGGAGCGATCGAAATTGGCATAGTTCCAGGTACAAGG
Found at i:80056615 original size:27 final size:27
Alignment explanation
Indices: 80056585--80056762 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
80056575 ATATTGAGTC
* * * *
80056585 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
80056612 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80056639 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
80056667 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
80056694 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
80056721 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80056748 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80056763 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:80056724 original size:82 final size:81
Alignment explanation
Indices: 80056606--80056761 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
80056596 TGCTATATAA
* *
80056606 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
80056671 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
80056688 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
80056752 CACTTAGTGC
65 CACTTAGTGC
80056762 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80068042 original size:44 final size:44
Alignment explanation
Indices: 80067980--80068136 Score: 151
Period size: 44 Copynumber: 3.6 Consensus size: 44
80067970 TTAACGACGC
* *
80067980 CAATGTCCCAAACATGGTCTTACATGTAAAACAGAAGTCGATGA
1 CAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGA
** * * * * *
80068024 CAACATCCCAGACGTGGTCTTACACG-ATATC-GATTA-ACGA-CA
1 CAATGTCCCAGACATGGTCTTACACGTAAAACAGA--AGTCGATGA
*
80068066 CCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGC
1 -CAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGA
* *
80068111 CAATGTCCCAGACGTGGTATTACACG
1 CAATGTCCCAGACATGGTCTTACACG
80068137 ATAACACATA
Statistics
Matches: 87, Mismatches: 19, Indels: 14
0.73 0.16 0.12
Matches are distributed among these distances:
42 3 0.03
43 30 0.34
44 52 0.60
45 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (44 bp):
CAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGA
Found at i:80068047 original size:87 final size:87
Alignment explanation
Indices: 80067952--80068137 Score: 300
Period size: 87 Copynumber: 2.1 Consensus size: 87
80067942 TCCCAAATAG
* *
80067952 GGTCTTACACGAAATCGATTAACGACGCCAATGTCCCAAACATGGTCTTACATGTAAAACAGAAG
1 GGTCTTACACGAAATCGATTAACGACACCAATGTCCCAAACATGGTCTTACACGTAAAACAGAAG
80068017 TCGATGACAACATCCCAGACGT
66 TCGATGACAACATCCCAGACGT
* *
80068039 GGTCTTACACGATATCGATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAG
1 GGTCTTACACGAAATCGATTAACGACACCAATGTCCCAAACATGGTCTTACACGTAAAACAGAAG
* **
80068104 TCGATGCCAATGTCCCAGACGT
66 TCGATGACAACATCCCAGACGT
*
80068126 GGTATTACACGA
1 GGTCTTACACGA
80068138 TAACACATAT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 91 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (87 bp):
GGTCTTACACGAAATCGATTAACGACACCAATGTCCCAAACATGGTCTTACACGTAAAACAGAAG
TCGATGACAACATCCCAGACGT
Found at i:80068085 original size:43 final size:43
Alignment explanation
Indices: 80067952--80068092 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 43
80067942 TCCCAAATAG
* *
80067952 GGTCTTACACGAAATCGATTAACGACGCCAATGTCCCAAACAT
1 GGTCTTACACGAAATCGATTAACGACACCAATGTCCCAGACAT
* * * * ** *
80067995 GGTCTTACATGTAAAACAGA--AGTCGATGA-CAACATCCCAGACGT
1 GGTCTTACACG-AAATC-GATTA-ACGA-CACCAATGTCCCAGACAT
*
80068039 GGTCTTACACGATATCGATTAACGACACCAATGTCCCAGACAT
1 GGTCTTACACGAAATCGATTAACGACACCAATGTCCCAGACAT
80068082 GGTCTTACACG
1 GGTCTTACACG
80068093 TAAAACAGAA
Statistics
Matches: 74, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
42 3 0.04
43 40 0.54
44 29 0.39
45 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (43 bp):
GGTCTTACACGAAATCGATTAACGACACCAATGTCCCAGACAT
Found at i:80080575 original size:27 final size:27
Alignment explanation
Indices: 80080537--80080904 Score: 486
Period size: 27 Copynumber: 13.7 Consensus size: 27
80080527 GCGTACGTGA
**
80080537 ACCCTTATGTGATAAAATGACAATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
* *
80080564 ACCCTTATGTGACAAAATGATGCTTTT
1 ACCCTTATGTGATAAAATGATGATTTT
* * *
80080591 GCCCTTATGTGCTAAAATGATGCTTTT
1 ACCCTTATGTGATAAAATGATGATTTT
* *
80080618 GCCCTTATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
*
80080645 ACCCTTATATGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
*
80080672 ACCCTTATGTGATAAAATGGTGATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
*
80080699 ACCCTTATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
* *
80080726 ACCC-TATGTGATAAAATGACGATGTT
1 ACCCTTATGTGATAAAATGATGATTTT
* *
80080752 GCCCTTATGTGATAAAATGATGATTCT
1 ACCCTTATGTGATAAAATGATGATTTT
*
80080779 ACGCTTATGTGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
* * * *
80080806 ACTCTTATGTGATAAAATAACGATTCT
1 ACCCTTATGTGATAAAATGATGATTTT
* * **
80080833 GCCCTCATGTGATAAAATGACAATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
* *
80080860 TCCATTATGTGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGATGATTTT
80080887 ACCCTTATGTGATAAAAT
1 ACCCTTATGTGATAAAAT
80080905 TACTGAAATA
Statistics
Matches: 298, Mismatches: 42, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 24 0.08
27 274 0.92
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGATGATTTT
Found at i:80080936 original size:27 final size:27
Alignment explanation
Indices: 80080906--80080999 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
80080896 TGATAAAATT
80080906 ACTGAAATACCCTCATAGGGTAAGATG
1 ACTGAAATACCCTCATAGGGTAAGATG
*
80080933 ACTGAAATACCCCCATAGGGT-AGAATG
1 ACTGAAATACCCTCATAGGGTAAG-ATG
* * *
80080960 ACTAAAATATCCCTGA-AGGGTAAAATG
1 ACTGAAATA-CCCTCATAGGGTAAGATG
*
80080987 ACTGTAATACCCT
1 ACTGAAATACCCT
80081000 TGTAAGGTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.11
27 46 0.81
28 5 0.09
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
ACTGAAATACCCTCATAGGGTAAGATG
Found at i:80081008 original size:27 final size:27
Alignment explanation
Indices: 80080899--80081014 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 27
80080889 CCTTATGTGA
* *
80080899 TAAAATTACTGAAATACCCTCATAGGG
1 TAAAATGACTGAAATACCCTCATAAGG
* * *
80080926 TAAGATGACTGAAATACCCCCATAGGG
1 TAAAATGACTGAAATACCCTCATAAGG
* * * *
80080953 TAGAATGACTAAAATATCCCTGA-AGGG
1 TAAAATGACTGAAATA-CCCTCATAAGG
* **
80080980 TAAAATGACTGTAATACCCTTGTAAGG
1 TAAAATGACTGAAATACCCTCATAAGG
80081007 TAAAATGA
1 TAAAATGA
80081015 TTGATTTGCC
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 4 0.05
27 65 0.89
28 4 0.05
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCATAAGG
Found at i:80081014 original size:54 final size:54
Alignment explanation
Indices: 80080899--80081014 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
80080889 CCTTATGTGA
* * * *
80080899 TAAAATTACTGAAATACCCTCATAGGGTAAGATGACTGAAATACCCCCATAGGG
1 TAAAATGACTAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAAGG
* * * ***
80080953 TAGAATGACTAAAATATCCCTGA-AGGGTAAAATGACTGTAATACCCTTGTAAGG
1 TAAAATGACTAAAATA-CCCTCATAGGGTAAAATGACTGAAATACCCCCATAAGG
80081007 TAAAATGA
1 TAAAATGA
80081015 TTGATTTGCC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
54 45 0.90
55 5 0.10
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (54 bp):
TAAAATGACTAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAAGG
Found at i:80084765 original size:12 final size:12
Alignment explanation
Indices: 80084750--80084778 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80084740 ACCCTAGCAT
80084750 GAAATATGGGTA
1 GAAATATGGGTA
80084762 GAAATATGGGTA
1 GAAATATGGGTA
80084774 -AAATA
1 GAAATA
80084779 CATAGAGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GAAATATGGGTA
Found at i:80084930 original size:13 final size:13
Alignment explanation
Indices: 80084912--80084938 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80084902 GATTTTTCCC
80084912 ATTTTAATTCATT
1 ATTTTAATTCATT
80084925 ATTTTAATTCATT
1 ATTTTAATTCATT
80084938 A
1 A
80084939 AAATGACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTAATTCATT
Found at i:80089361 original size:44 final size:44
Alignment explanation
Indices: 80089306--80089455 Score: 173
Period size: 44 Copynumber: 3.4 Consensus size: 44
80089296 ACGCCAATGT
80089306 CCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATC
1 CCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATC
* * * * * **
80089350 CCAGACGTGGTCTTACACG-ATATC-GATTA-ACGA-CACCAATGTC
1 CCAGACATGGTCTTACACGTAAAACAGA--AGTCGATGA-CAACATC
80089393 CCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATC
1 CCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATC
*
80089437 CCAGACGTGGTCTTACACG
1 CCAGACATGGTCTTACACG
80089456 ATATCGATTA
Statistics
Matches: 84, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
42 3 0.04
43 30 0.36
44 48 0.57
45 3 0.04
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (44 bp):
CCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATC
Found at i:80089404 original size:43 final size:43
Alignment explanation
Indices: 80089348--80089498 Score: 173
Period size: 43 Copynumber: 3.5 Consensus size: 43
80089338 GATGACAACA
*
80089348 TCCCAGACGTGGTCTTACACGATATCGATTAACGACACCAATG
1 TCCCAGACATGGTCTTACACGATATCGATTAACGACACCAATG
* * * * **
80089391 TCCCAGACATGGTCTTACACGTAAAACAGA--AGTCGATGA-CAACA
1 TCCCAGACATGGTCTTACACG-ATATC-GATTA-ACGA-CACCAATG
*
80089435 TCCCAGACGTGGTCTTACACGATATCGATTAACGACACCAATG
1 TCCCAGACATGGTCTTACACGATATCGATTAACGACACCAATG
80089478 TCCCAGACATGGTCTTACACG
1 TCCCAGACATGGTCTTACACG
80089499 TAAAACACAA
Statistics
Matches: 86, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
42 3 0.03
43 50 0.58
44 30 0.35
45 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGATATCGATTAACGACACCAATG
Found at i:80089420 original size:87 final size:87
Alignment explanation
Indices: 80089288--80089505 Score: 411
Period size: 87 Copynumber: 2.5 Consensus size: 87
80089278 ATACAAAATT
* *
80089288 GATTAATGACGCCAATGT-CCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATCCC
1 GATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATCCC
80089352 AGACGTGGTCTTACACGATATC
66 AGACGTGGTCTTACACGATATC
80089374 GATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATCCC
1 GATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATCCC
80089439 AGACGTGGTCTTACACGATATC
66 AGACGTGGTCTTACACGATATC
80089461 GATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACA
1 GATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACA
80089506 CAATGTCCCA
Statistics
Matches: 129, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
86 16 0.12
87 113 0.88
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (87 bp):
GATTAACGACACCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGACAACATCCC
AGACGTGGTCTTACACGATATC
Found at i:80091168 original size:33 final size:33
Alignment explanation
Indices: 80091126--80091191 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
80091116 AGACCTCACT
* *
80091126 GTTGTATCCTGCGTTGCATTATTGCTGCTGAAC
1 GTTGTATCCTGCATTGCATAATTGCTGCTGAAC
80091159 GTTGTATCCTGCATTGCATAATTGCTGCTGAAC
1 GTTGTATCCTGCATTGCATAATTGCTGCTGAAC
80091192 CCATTCCCGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (33 bp):
GTTGTATCCTGCATTGCATAATTGCTGCTGAAC
Found at i:80093450 original size:20 final size:20
Alignment explanation
Indices: 80093427--80093473 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
80093417 AGCTCCGTCC
*
80093427 AGCTCAATTCAGCTTATTTG
1 AGCTCAATTCAGCTCATTTG
* * *
80093447 AGCTCATTTTAGCTCGTTTG
1 AGCTCAATTCAGCTCATTTG
80093467 AGCTCAA
1 AGCTCAA
80093474 CCGAGCTTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTCAGCTCATTTG
Found at i:80103756 original size:27 final size:27
Alignment explanation
Indices: 80103718--80104057 Score: 461
Period size: 27 Copynumber: 12.7 Consensus size: 27
80103708 GCGTACCTGA
*
80103718 ACCCTTATGTGATAAAATGACAATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
80103745 ACCCTTATGTGATAAAATGAC-ACTTTT
1 ACCCTTATGTGATAAAATGACGA-TTTT
* *
80103772 TCCCTTATGTGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
*
80103799 ACCCTTATGTGATAAAATGGCGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
80103826 ACCC-TATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
*
80103852 ACCC-TATGTGATAAAATGACGATGTT
1 ACCCTTATGTGATAAAATGACGATTTT
** * *
80103878 GTCCTTATGTGATAAAATGATGATTCT
1 ACCCTTATGTGATAAAATGACGATTTT
** *
80103905 ATGCTTATGTGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
80103932 ACTCTTATGTGATAAAATAACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
80103959 GCCCTCATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
80103986 GCCCTCATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* * *
80104013 GCCCTTATGTGATAAAATGATGACTTT
1 ACCCTTATGTGATAAAATGACGATTTT
80104040 ACCCTTATGTGATAAAAT
1 ACCCTTATGTGATAAAAT
80104058 TACCGAAACA
Statistics
Matches: 283, Mismatches: 27, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
26 49 0.17
27 233 0.82
28 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACGATTTT
Found at i:80104092 original size:27 final size:27
Alignment explanation
Indices: 80104039--80104167 Score: 109
Period size: 27 Copynumber: 4.8 Consensus size: 27
80104029 ATGATGACTT
* * *
80104039 TACCCTTAT-GTGATAAAATTACCGAAA
1 TACCCTTATAG-GGTAAAATGACTGAAA
* *
80104066 CACCCTTATAGGGTAAGATGACTGAAA
1 TACCCTTATAGGGTAAAATGACTGAAA
** * *
80104093 TACCCCCATAGGGTAGAATGACTAAAA
1 TACCCTTATAGGGTAAAATGACTGAAA
* *
80104120 TATCCCTGA-AGGGTAAAATGACTGTAA
1 TA-CCCTTATAGGGTAAAATGACTGAAA
* *
80104147 TACCCTTGTAAGGTAAAATGA
1 TACCCTTATAGGGTAAAATGA
80104168 TTGATTTGCC
Statistics
Matches: 80, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 4 0.05
27 71 0.89
28 5 0.06
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
TACCCTTATAGGGTAAAATGACTGAAA
Found at i:80106729 original size:13 final size:13
Alignment explanation
Indices: 80106711--80106735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80106701 TGGTCATCAT
80106711 GGTGTGAACACAA
1 GGTGTGAACACAA
80106724 GGTGTGAACACA
1 GGTGTGAACACA
80106736 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:80110101 original size:28 final size:29
Alignment explanation
Indices: 80110069--80110183 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
80110059 TACATGTATC
* * *
80110069 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
80110097 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
80110126 TGGTCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
80110155 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
80110183 T
1 T
80110184 TCAAGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:80110429 original size:16 final size:16
Alignment explanation
Indices: 80110410--80110440 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
80110400 CTTTTCAGCA
80110410 TTTCGGCATTTTGGCT
1 TTTCGGCATTTTGGCT
80110426 TTTCGGCATTTTGGC
1 TTTCGGCATTTTGGC
80110441 ATTTGCCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.19, G:0.26, T:0.48
Consensus pattern (16 bp):
TTTCGGCATTTTGGCT
Found at i:80110434 original size:24 final size:24
Alignment explanation
Indices: 80110398--80110444 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
80110388 CCAAACTTTC
80110398 GGCTTTTCAGCATTTCGGCATTTT
1 GGCTTTTCAGCATTTCGGCATTTT
* *
80110422 GGCTTTTCGGCATTTTGGCATTT
1 GGCTTTTCAGCATTTCGGCATTT
80110445 GCCAATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (24 bp):
GGCTTTTCAGCATTTCGGCATTTT
Found at i:80110443 original size:8 final size:8
Alignment explanation
Indices: 80110407--80110444 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
80110397 CGGCTTTTCA
*
80110407 GCATTTCG
1 GCATTTTG
80110415 GCATTTTG
1 GCATTTTG
80110423 GC-TTTTCG
1 GCATTTT-G
80110431 GCATTTTG
1 GCATTTTG
80110439 GCATTT
1 GCATTT
80110445 GCCAATACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
7 4 0.15
8 19 0.70
9 4 0.15
ACGTcount: A:0.11, C:0.18, G:0.24, T:0.47
Consensus pattern (8 bp):
GCATTTTG
Found at i:80114442 original size:47 final size:47
Alignment explanation
Indices: 80114391--80114700 Score: 386
Period size: 47 Copynumber: 6.2 Consensus size: 47
80114381 TTAGGATTCT
*
80114391 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
80114438 ATGTGATGAATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 A--TG-TG-A--T---GAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
80114494 ATGTGATGAATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 A--TG-TG-A--T---GAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
80114550 ATGTGATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
80114597 ATGTGATAAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
80114644 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
80114691 ATGTGATGAA
1 ATGTGATGAA
80114701 CGTGGAAGTG
Statistics
Matches: 247, Mismatches: 7, Indels: 18
0.91 0.03 0.07
Matches are distributed among these distances:
47 138 0.56
49 2 0.01
50 3 0.01
51 1 0.00
52 1 0.00
53 3 0.01
54 2 0.01
56 97 0.39
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:80114477 original size:56 final size:56
Alignment explanation
Indices: 80114391--80114659 Score: 367
Period size: 56 Copynumber: 5.1 Consensus size: 56
80114381 TTAGGATTCT
*
80114391 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
80114447 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
80114503 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAA--TG-TG-
1 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
* *
80114555 A--T---GAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAA--TG-TG-
1 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
* *
80114602 A--T--A-AATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
80114653 ATGTGAA
1 ATGTGAA
80114660 CATGCATATA
Statistics
Matches: 201, Mismatches: 3, Indels: 19
0.90 0.01 0.09
Matches are distributed among these distances:
47 85 0.42
49 2 0.01
50 3 0.01
51 1 0.00
52 1 0.00
53 3 0.01
54 2 0.01
55 1 0.00
56 103 0.51
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (56 bp):
ATGTGAAGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:80114555 original size:22 final size:22
Alignment explanation
Indices: 80114529--80114650 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
80114519 CATGCATATG
80114529 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
80114551 TGTGATGAATG-TGAACAT-GCAAATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
80114576 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
80114598 TGTGATAAATG-TGAACAT-GCAAATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
80114623 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
80114645 TGTGAT
1 TGTGAT
80114651 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 28
0.65 0.11 0.25
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:80116384 original size:85 final size:85
Alignment explanation
Indices: 80116241--80116575 Score: 661
Period size: 85 Copynumber: 3.9 Consensus size: 85
80116231 GGCCGGCCAT
80116241 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
80116306 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
80116326 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
80116391 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
80116411 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
80116476 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
80116496 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
80116561 GTAAGGATTCATAAA
66 GTAAGGATTAATAAA
80116576 CATGTTGGGG
Statistics
Matches: 249, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 249 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:80116580 original size:36 final size:36
Alignment explanation
Indices: 80116533--80116611 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
80116523 TAAAAACATG
80116533 TCATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
1 TCATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
80116569 TCATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
1 TCATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
*
80116605 TAATAAA
1 TCATAAA
80116612 ATAAAGGGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.33
Consensus pattern (36 bp):
TCATAAACATGTTGGGGTAGTGCATTATGTAAGGAT
Found at i:80120956 original size:107 final size:107
Alignment explanation
Indices: 80120770--80121078 Score: 573
Period size: 107 Copynumber: 2.9 Consensus size: 107
80120760 TCTCTCTCTC
* * * *
80120770 TTTTTCAAATTCGAGCATTTTGCTGAATGGACTACAATTTAAGAGCATTCGATACTTCCTTTCAA
1 TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
*
80120835 GTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
66 CTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
80120877 TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
1 TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
80120942 CTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
66 CTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
80120984 TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
1 TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
80121049 CTCCCCCAAACTTATTTTTAAAGAATACTT
66 CTCCCCCAAACTTATTTTTAAAGAATACTT
80121079 TGAATAGTAC
Statistics
Matches: 197, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 197 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (107 bp):
TTTTTCAAATTCGAGCATTTTGCTAAATGTACTACAATTTTAGAGCATTAGATACTTCCTTTCAA
CTCCCCCAAACTTATTTTTAAAGAATACTTCGAGTAGTTTTT
Found at i:80123198 original size:25 final size:27
Alignment explanation
Indices: 80123155--80123215 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
80123145 TTTTCTGAAA
*
80123155 AATTT-AAAAATTATTAATGATTCAAT-
1 AATTTAAAAAATTA-TAATGATTAAATG
80123181 AATTTAAAAAATTA-AATGATTAAATG
1 AATTTAAAAAATTATAATGATTAAATG
*
80123207 AAATTAAAA
1 AATTTAAAA
80123216 GTTAGGGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 10 0.32
26 13 0.42
27 8 0.26
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (27 bp):
AATTTAAAAAATTATAATGATTAAATG
Found at i:80123778 original size:17 final size:18
Alignment explanation
Indices: 80123751--80123784 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80123741 AATTAAATAT
80123751 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
80123769 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
80123785 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Done.