Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 243 of 310
Found at i:80126492 original size:22 final size:22
Alignment explanation
Indices: 80126448--80126492 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
80126438 TAGCTTTTTC
*
80126448 AGTAAAAAAAGTTAGTGAACAT
1 AGTAAAAAAAGTTAGTCAACAT
*
80126470 AGTAAAAAAAGTTAGTCAGCAT
1 AGTAAAAAAAGTTAGTCAACAT
80126492 A
1 A
80126493 TGCAAGCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.07, G:0.18, T:0.22
Consensus pattern (22 bp):
AGTAAAAAAAGTTAGTCAACAT
Found at i:80141671 original size:36 final size:36
Alignment explanation
Indices: 80141590--80141715 Score: 109
Period size: 36 Copynumber: 3.5 Consensus size: 36
80141580 CTCCCTATTT
*
80141590 TGGTGTGTTTT-GATTGGACTAGCTCTT-TGGAGCCAT-
1 TGGTGTGTTTTGGA-TGGATTAGCTCTTAT-GAG-CATC
80141626 TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
* * **
80141662 TGGTTTGTTTCGAGCAT--ATTAGCTCTTATGAAAATC
1 TGGTGTGTTTTG-G-ATGGATTAGCTCTTATGAGCATC
* *
80141698 TGATGTGTTTTGGTTGGA
1 TGGTGTGTTTTGGATGGA
80141716 ATATCGATGA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
34 1 0.01
35 4 0.05
36 63 0.85
37 4 0.05
38 2 0.03
ACGTcount: A:0.17, C:0.11, G:0.29, T:0.43
Consensus pattern (36 bp):
TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
Found at i:80144923 original size:16 final size:16
Alignment explanation
Indices: 80144902--80144950 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
80144892 TTAATTAAAA
*
80144902 AAGGTAGAAATAACAC
1 AAGGTAAAAATAACAC
80144918 AAGGTAAAAATAACAC
1 AAGGTAAAAATAACAC
* *
80144934 GACGTTAAAAATAACAC
1 -AAGGTAAAAATAACAC
80144951 GACGTTAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (16 bp):
AAGGTAAAAATAACAC
Found at i:80144944 original size:17 final size:17
Alignment explanation
Indices: 80144909--80144958 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
80144899 AAAAAGGTAG
* *
80144909 AAATAACAC-AAGGTAA
1 AAATAACACGACGTTAA
80144925 AAATAACACGACGTTAA
1 AAATAACACGACGTTAA
80144942 AAATAACACGACGTTAA
1 AAATAACACGACGTTAA
80144959 CGATTAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 9 0.29
17 22 0.71
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (17 bp):
AAATAACACGACGTTAA
Found at i:80145926 original size:29 final size:29
Alignment explanation
Indices: 80145887--80146083 Score: 193
Period size: 29 Copynumber: 6.8 Consensus size: 29
80145877 CAAATTTTAG
* *
80145887 TAAAAGGATGCCTTTGTGGCTATCTTTTT
1 TAAAAGGATGCCTTTGTGGCAATCTTTGT
* *
80145916 TAAAAGGATGCTTTTGTGGCTATCTTTGT
1 TAAAAGGATGCCTTTGTGGCAATCTTTGT
* *
80145945 TAAAAGGAAGCCTTTGTGGCAATCTTAGT
1 TAAAAGGATGCCTTTGTGGCAATCTTTGT
* *
80145974 TAAAAGG-TAGCCTTTGTGGCGATCTCTGT
1 TAAAAGGAT-GCCTTTGTGGCAATCTTTGT
* *
80146003 TAAAAGGA-ACCTTTTGTGGCAATCTCTGT
1 TAAAAGGATGCC-TTTGTGGCAATCTTTGT
** * *
80146032 TAAAAAAAAT-CGTTTGTGGCAATATTTGT
1 T-AAAAGGATGCCTTTGTGGCAATCTTTGT
* *
80146061 TAAAAAAGATGTCTTTGTGGCAA
1 T-AAAAGGATGCCTTTGTGGCAA
80146084 GACTCTGAAG
Statistics
Matches: 142, Mismatches: 20, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
28 2 0.01
29 124 0.87
30 16 0.11
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (29 bp):
TAAAAGGATGCCTTTGTGGCAATCTTTGT
Found at i:80146033 original size:87 final size:87
Alignment explanation
Indices: 80145883--80146081 Score: 231
Period size: 87 Copynumber: 2.3 Consensus size: 87
80145873 AACACAAATT
* * * ** * *
80145883 TTAG-TAAAAGGATGCCTTTGTGGCTATCTTTTTTAAAAGGATGCTTTTGTGGCTATCTTTGTTA
1 TTAGTTAAAAGGATGCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTTA
** *
80145947 AAAGGAAGCCTTTGTGGCAATC
66 AAAAAAAGCCTTTGTGGCAATA
80145969 TTAGTTAAAAGG-TAGCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTT
1 TTAGTTAAAAGGAT-GCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTT
* *
80146033 AAAAAAAATCGTTTGTGGCAATA
65 AAAAAAAAGCCTTTGTGGCAATA
* * *
80146056 TTTGTTAAAAAAGATGTCTTTGTGGC
1 TTAGTT-AAAAGGATGCCTTTGTGGC
80146082 AAGACTCTGA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
86 5 0.05
87 73 0.78
88 15 0.16
89 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.38
Consensus pattern (87 bp):
TTAGTTAAAAGGATGCCTTTGTGGCGATCTCTGTTAAAAGGAACCTTTTGTGGCAATCTCTGTTA
AAAAAAAGCCTTTGTGGCAATA
Found at i:80148392 original size:46 final size:47
Alignment explanation
Indices: 80148245--80148503 Score: 257
Period size: 46 Copynumber: 5.5 Consensus size: 47
80148235 TTTGTGTTCT
* *
80148245 AGTGTAAGACATGTCTGGGACATGCATTGGCTAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGTAGAGCC
* * *
80148291 AGTGTAAGACAATGTCTGGGACATGGCAACGG-TATTGAGATG-AGAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTA-CGAGATGTAGAGCC
*
80148339 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAGAGCC
* * * *
80148385 AGTGTAAGACAAGTATGGGACATGCATCAGCTACGAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAGAGCC
* * *
80148429 AGTTTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGATGT-AGAGCC
80148479 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
80148504 GCGTCAGCCT
Statistics
Matches: 178, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
44 10 0.06
45 14 0.08
46 75 0.42
47 30 0.17
48 23 0.13
49 2 0.01
50 24 0.13
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAGAGCC
Found at i:80148483 original size:94 final size:93
Alignment explanation
Indices: 80148245--80148511 Score: 287
Period size: 94 Copynumber: 2.9 Consensus size: 93
80148235 TTTGTGTTCT
* *
80148245 AGTGTAAGACATGTCTGGGACATGCATTGGCTAC-AT-TATGAGAGCCAGTGTAAGACAATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGATATGTGAGAGCCAGTGTAAGACAA-GTCT
* * * * *
80148308 GGGACATGGCAAC-GGTATTGAGATGAGAGC
65 GGGACATGGCATCAGCTA-CGAGATGTG-TC
* * *
80148338 TAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGT-A-AGCCAGTGTAAGACAAGTAT
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCTACGATATGTGAGAGCCAGTGTAAGACAAGTCT
80148401 GGGACAT-GCATCAGCTACGAGATGTGTC
65 GGGACATGGCATCAGCTACGAGATGTGTC
* * *
80148429 AGTTTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GATATGTGAGAGCCAGTGTAAGA-CAAG
*
80148493 TCTGGGACATGGCGTCAGC
62 TCTGGGACATGGCATCAGC
80148512 CTCAATTTCA
Statistics
Matches: 146, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
90 8 0.05
91 16 0.11
92 25 0.17
93 14 0.10
94 60 0.41
95 14 0.10
96 9 0.06
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGATATGTGAGAGCCAGTGTAAGACAAGTCTG
GGACATGGCATCAGCTACGAGATGTGTC
Found at i:80183209 original size:13 final size:13
Alignment explanation
Indices: 80183191--80183219 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80183181 GCTCAGTAGG
80183191 GACACGACCGTGT
1 GACACGACCGTGT
80183204 GACACGACCGTGT
1 GACACGACCGTGT
80183217 GAC
1 GAC
80183220 GTGATTGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.14
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:80184901 original size:38 final size:38
Alignment explanation
Indices: 80184850--80184926 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
80184840 TTATACTCCT
*
80184850 CATTCCTGTTATCAATCTTATCAAAATAAGGTTTTAGA
1 CATTCCTGCTATCAATCTTATCAAAATAAGGTTTTAGA
80184888 CATTCCTGCTATCAATCTTATCAAAATAAGGTTTTAGA
1 CATTCCTGCTATCAATCTTATCAAAATAAGGTTTTAGA
80184926 C
1 C
80184927 GGGTGTTGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (38 bp):
CATTCCTGCTATCAATCTTATCAAAATAAGGTTTTAGA
Found at i:80193426 original size:12 final size:12
Alignment explanation
Indices: 80193398--80193426 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
80193388 TATATCTATA
80193398 TGGTAGAATTTT
1 TGGTAGAATTTT
80193410 T-GTAGAATTTT
1 TGGTAGAATTTT
80193421 TGGTAG
1 TGGTAG
80193427 GGCCAATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (12 bp):
TGGTAGAATTTT
Found at i:80195887 original size:40 final size:40
Alignment explanation
Indices: 80195832--80195929 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
80195822 NNNNNNNNNN
*
80195832 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAA
* *
80195872 CCGGGCTAAGTCCCGACGGCATTTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAA
* *
80195912 CC-GGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80195930 TACTTGGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 15 0.29
40 36 0.71
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAA
Found at i:80200676 original size:27 final size:27
Alignment explanation
Indices: 80200639--80200821 Score: 246
Period size: 27 Copynumber: 6.9 Consensus size: 27
80200629 ATGTATACAT
*
80200639 CACAT-AGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
80200665 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
80200692 CACATAAGGGC--AACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
80200717 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
80200744 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
80200771 CACATAAGGGTAAAATAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
80200798 CATATAAGGGCAAAATAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
80200822 ATTAATTTAG
Statistics
Matches: 141, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
25 23 0.16
26 4 0.03
27 114 0.81
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:80200724 original size:52 final size:52
Alignment explanation
Indices: 80200651--80200810 Score: 230
Period size: 52 Copynumber: 3.0 Consensus size: 52
80200641 CATAGGGCAA
* * *
80200651 AACAGTCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
1 AACAATCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
* *
80200703 AACAATCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGC
1 AACAATCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
* * *
80200755 AAAACAATCATTTTACCACATAAGGGTAAAATAGTTATTTTACCATATAAGGGC
1 --AACAATCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
80200809 AA
1 AA
80200811 AATAGTCATT
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 49 0.51
54 47 0.49
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (52 bp):
AACAATCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
Found at i:80200775 original size:79 final size:81
Alignment explanation
Indices: 80200639--80200821 Score: 255
Period size: 79 Copynumber: 2.3 Consensus size: 81
80200629 ATGTATACAT
* * * *
80200639 CACAT-AGGGCAAAACAGTCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGC
*
80200703 AACA-A-TCATTTTAC
66 AAAATAGTCATTTTAC
* *
80200717 CACATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGT
1 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGC
*
80200782 AAAATAGTTATTTTAC
66 AAAATAGTCATTTTAC
* *
80200798 CATATAAGGGCAAAATAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
80200822 ATTAATTTAG
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 5 0.05
79 56 0.62
80 1 0.01
81 29 0.32
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (81 bp):
CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGC
AAAATAGTCATTTTAC
Found at i:80212451 original size:64 final size:64
Alignment explanation
Indices: 80212345--80212471 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 64
80212335 TGCCATTTTC
*
80212345 AAAACTGAACTAAAAGAGTAGCAAAAAGTGGCTTAGATAGTGTGGATGACTTCGACTTTGACAA
1 AAAACTGAACTAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGATGACTTCGACTTTGACAA
*
80212409 AAAATTGAACTAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGATGACTTCGACTTTGACA
1 AAAACTGAACTAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGATGACTTCGACTTTGACA
80212472 CTCCCGAGTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (64 bp):
AAAACTGAACTAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGATGACTTCGACTTTGACAA
Found at i:80212919 original size:40 final size:40
Alignment explanation
Indices: 80212844--80213065 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
80212834 AAACCCAAGT
* *
80212844 ACCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAAC
1 ACCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAC
*
80212883 ACCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAA-
1 ACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAC
* *
80212922 AGCCTTCGGGACTTAGCCAGGATATAG-CAACTCGCACAAAC
1 A-CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAC
* * *
80212963 GCCTTCGGGACTTAGCCCGGGTATAGTCAATAGCAC-AAC
1 ACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAC
* * *
80213002 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CAT
1 -ACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAC
* *
80213042 GCCTTCAGGACTTAGCCCGGATAT
1 ACCTTCGGGACTTAGCCCGGATAT
80213066 CATCTGAATA
Statistics
Matches: 160, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 41 0.26
40 117 0.73
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAC
Found at i:80212977 original size:80 final size:79
Alignment explanation
Indices: 80212845--80213065 Score: 302
Period size: 80 Copynumber: 2.8 Consensus size: 79
80212835 AACCCAAGTA
* * *
80212845 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAACACCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAGT
*
80212910 CACTAGCACAAAAG
66 CAATAGCACAAAAG
*
80212924 CCTTCGGGACTTAGCCAGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCC-GGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAG
**
80212989 TCAATAGCACAACTG
65 TCAATAGCACAAAAG
* * * *
80213004 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATGCCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATAT
80213066 CATCTGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 38 0.30
80 86 0.68
81 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAG
Found at i:80213968 original size:100 final size:100
Alignment explanation
Indices: 80213795--80213990 Score: 320
Period size: 100 Copynumber: 2.0 Consensus size: 100
80213785 TTTCTTAAAT
* * * *
80213795 TTCACCTTGTTTCACTGTTTGACTAAACTGACTATTCTTCACAATGAATCAAATTTCTCATTGGA
1 TTCACCTTGTTTCACTATTTGACTAAACTGACTATTCTTCACAACGAATCAAATTTCTCACTGCA
* *
80213860 CAGAATTCAAAATATGTTCTCGTTTAGTTCAAAAG
66 CAAAATTCAAAATATGTTCTCATTTAGTTCAAAAG
*
80213895 TTCACCTTGTTTCACTATTTGACTAAACTGACTATTCTTCACTACGAATCAAATTTCTCACTGCA
1 TTCACCTTGTTTCACTATTTGACTAAACTGACTATTCTTCACAACGAATCAAATTTCTCACTGCA
*
80213960 CAAAATTCAAAATATGTTCTCATTTATTTCA
66 CAAAATTCAAAATATGTTCTCATTTAGTTCA
80213991 TTTGAAACTA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (100 bp):
TTCACCTTGTTTCACTATTTGACTAAACTGACTATTCTTCACAACGAATCAAATTTCTCACTGCA
CAAAATTCAAAATATGTTCTCATTTAGTTCAAAAG
Found at i:80221747 original size:40 final size:40
Alignment explanation
Indices: 80221672--80221892 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
80221662 AACCCAAGTA
* *
80221672 CCTTCAGGATTTAG-CCGGATATA-GCAACTCA-CACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGGC-ACT-AGCACAAACG
* *
80221711 CCTTCGGGTCTTAGCCCGGATATAGGCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGGCACTAGCACAAACG
* * *
80221751 CCTTCGAGACTTAGCCCGGATATA-GCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGGC-ACTAGCACAAACG
* * *
80221791 CCTTCGGGACTTAGCCCGGGTATAGTCAATAGCAC-AACTG
1 CCTTCGGGACTTAGCCCGGATATAGGCACTAGCACAAAC-G
* * *
80221831 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGGCACTAGCACAAACG
80221870 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80221893 CATCCGAATA
Statistics
Matches: 158, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 40 0.25
40 115 0.73
41 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGGCACTAGCACAAACG
Found at i:80221804 original size:80 final size:80
Alignment explanation
Indices: 80221682--80221892 Score: 293
Period size: 80 Copynumber: 2.7 Consensus size: 80
80221672 CCTTCAGGAT
* * * *
80221682 TTAG-CCGGATATAGCAACTCACACAAACGCCTTCGGGTCTTAGCCCGGATATAGGCACTAGCAC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGCAATAGCAC
80221746 AAAAGCCTTCGAGAC
66 AAAAGCCTTCGAGAC
* *
80221761 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTCAATAGCAC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGCAATAGCAC
** *
80221826 AACTGCCTTCGGGAC
66 AAAAGCCTTCGAGAC
* *
80221841 TTAGCCCGGATATAGTC-ACTAGCAC-CATGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
80221893 CATCCGAATA
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 29 0.25
80 88 0.75
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (80 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGCAATAGCAC
AAAAGCCTTCGAGAC
Found at i:80223703 original size:40 final size:40
Alignment explanation
Indices: 80223659--80223739 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
80223649 ATTATTAGCA
80223659 CAAAATAATTATAATATACTTTAGTCCATAACATGGCCGG
1 CAAAATAATTATAATATACTTTAGTCCATAACATGGCCGG
* *
80223699 CAAAATAATTATAATATGCTTTAGTTCATAACATGGCCGG
1 CAAAATAATTATAATATACTTTAGTCCATAACATGGCCGG
80223739 C
1 C
80223740 CACCATCTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (40 bp):
CAAAATAATTATAATATACTTTAGTCCATAACATGGCCGG
Found at i:80241011 original size:61 final size:61
Alignment explanation
Indices: 80240914--80241033 Score: 179
Period size: 61 Copynumber: 2.0 Consensus size: 61
80240904 GCCCTGACCA
* * *
80240914 CTCTTCACTAAAAATAAATTTTCTCTTCGTAAAGAACTTATATGATGTTATCGTTTATTCG
1 CTCTTCACTAAAAATAAATTTTCTCTTCATAAAGAACTCATATGATGTTATCATTTATTCG
* *
80240975 CTCTTCAC-AACAAATAAATTTTCTCTTCATATAGAACTCGTATGATGTTATCATTTATT
1 CTCTTCACTAA-AAATAAATTTTCTCTTCATAAAGAACTCATATGATGTTATCATTTATT
80241034 TTATTTGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 2 0.04
61 51 0.96
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.42
Consensus pattern (61 bp):
CTCTTCACTAAAAATAAATTTTCTCTTCATAAAGAACTCATATGATGTTATCATTTATTCG
Found at i:80255646 original size:27 final size:28
Alignment explanation
Indices: 80255562--80255659 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
80255552 CATGAGATTG
* * * *
80255562 GCACTAAGTGTGCGCGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
80255591 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80255619 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80255646 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80255660 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80255670 original size:27 final size:27
Alignment explanation
Indices: 80255590--80255672 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
80255580 TAAATTGTAC
* *
80255590 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80255618 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80255645 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80255672 A
1 A
80255673 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80255673 original size:29 final size:27
Alignment explanation
Indices: 80255562--80255673 Score: 100
Period size: 28 Copynumber: 4.0 Consensus size: 27
80255552 CATGAGATTG
* *
80255562 GCACTAAGTGTGCG-CGTTTAAATTGTACA
1 GCACTAAGTGTGCGAC--TT-AATTATATA
* *
80255591 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
80255619 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
80255646 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
80255674 TTTTGAATCA
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
27 23 0.32
28 27 0.38
29 21 0.30
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:80257745 original size:47 final size:47
Alignment explanation
Indices: 80257686--80257985 Score: 447
Period size: 47 Copynumber: 6.4 Consensus size: 47
80257676 GATGTACAAG
* * *
80257686 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
80257733 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
80257780 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
80257827 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
80257874 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
80257921 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
80257968 GCGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
80257986 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 227 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:80257802 original size:94 final size:94
Alignment explanation
Indices: 80257686--80257985 Score: 501
Period size: 94 Copynumber: 3.2 Consensus size: 94
80257676 GATGTACAAG
*
80257686 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
80257751 GCCGAATGGCCAATGTGATGAATGTGAAG
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* *
80257780 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80257845 GCCGAATGGCCAATGTGATGAATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
80257874 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
80257939 GCCGAATGGCCAATGTGATGGATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* *
80257968 GCGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
80257986 TCCCGAAGGG
Statistics
Matches: 194, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 194 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:80260910 original size:51 final size:51
Alignment explanation
Indices: 80260742--80260918 Score: 232
Period size: 51 Copynumber: 3.5 Consensus size: 51
80260732 CTAGTGACTT
* *
80260742 AAGTGGGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCAC
1 AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCAC
* * *
80260791 AAGTGTGGTACCATATGAAGGCCACTTTATGAAGAAAGATAGCTTTGGTCAC
1 AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCAC
* * **
80260843 AAGTGTGGTACGATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGACCAC
1 AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCAC
* *
80260894 AAGGGTGGTACTATGTGCAGGCCAC
1 AAGTGTGGTACTATGTGAAGGCCAC
80260919 CAGGTATCCG
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 29 0.26
51 43 0.39
52 39 0.35
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.25
Consensus pattern (51 bp):
AAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCAC
Found at i:80269254 original size:39 final size:38
Alignment explanation
Indices: 80269200--80269296 Score: 113
Period size: 39 Copynumber: 2.5 Consensus size: 38
80269190 ATATAATAAT
** *
80269200 TACAATTACTGTAATTATAATAATGTTTGACCAAAAAAA
1 TACAATTACAATAATTATAATAATATTTGA-CAAAAAAA
* ** *
80269239 TACAATTACAATAATTATAATAATATTTGATAGTAAAT
1 TACAATTACAATAATTATAATAATATTTGACAAAAAAA
*
80269277 TATAATTACAATAATTATAA
1 TACAATTACAATAATTATAA
80269297 CAAGGATTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
38 23 0.46
39 27 0.54
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (38 bp):
TACAATTACAATAATTATAATAATATTTGACAAAAAAA
Found at i:80270827 original size:13 final size:13
Alignment explanation
Indices: 80270809--80270845 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
80270799 AGTAATCGAA
80270809 CACGGGCGTGTGC
1 CACGGGCGTGTGC
80270822 CACGGGCGTGTGC
1 CACGGGCGTGTGC
*
80270835 CACAGGCGTGT
1 CACGGGCGTGT
80270846 CCCTGTCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.11, C:0.30, G:0.43, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTGC
Found at i:80283442 original size:32 final size:32
Alignment explanation
Indices: 80283391--80283471 Score: 94
Period size: 32 Copynumber: 2.5 Consensus size: 32
80283381 TTTGATATTG
*
80283391 AAATGGGCTAGGCCCAACTGATACTT-ATTCTA
1 AAATGGGCGAGGCCCAACTGATA-TTGATTCTA
80283423 AAATGGGCGA-GCCCAAACTGATATTGATTCTA
1 AAATGGGCGAGGCCC-AACTGATATTGATTCTA
** *
80283455 TGATGGGCTAGGCCCAA
1 AAATGGGCGAGGCCCAA
80283472 TTGAGACTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
31 6 0.14
32 32 0.76
33 4 0.10
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (32 bp):
AAATGGGCGAGGCCCAACTGATATTGATTCTA
Found at i:80294938 original size:40 final size:40
Alignment explanation
Indices: 80294883--80294995 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
80294873 ACAAGCCTGA
* * * *
80294883 GTAGTTACTTCCTGACTGTCAGATTGTATGAGCAGCCCTT
1 GTAGTTACATCCTGACTGTCAGCTTGTGTGAGCAGCCCGT
* * *
80294923 GTAGTTACATCCTGACCGTTAGCTTATGTGAGCAGCCCGT
1 GTAGTTACATCCTGACTGTCAGCTTGTGTGAGCAGCCCGT
* *
80294963 ATAGTTACATCCTGATTGTCAGCTTGTGTGAGC
1 GTAGTTACATCCTGACTGTCAGCTTGTGTGAGC
80294996 CGGCCTGTGA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (40 bp):
GTAGTTACATCCTGACTGTCAGCTTGTGTGAGCAGCCCGT
Found at i:80296232 original size:22 final size:22
Alignment explanation
Indices: 80296190--80296233 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
80296180 AATTATTTAC
* *
80296190 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
80296212 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
80296234 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:80296518 original size:40 final size:40
Alignment explanation
Indices: 80296460--80297401 Score: 1762
Period size: 40 Copynumber: 23.6 Consensus size: 40
80296450 AACCCAAGTA
* * * *
80296460 CCTTCAGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * * * *
80296499 CCTTCGGGTCTAAGCCCAGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296539 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296579 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296619 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296659 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296699 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296739 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296779 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296819 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296859 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296899 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296939 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80296979 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297019 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297059 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297099 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297139 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297179 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297219 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297259 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80297299 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80297339 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80297379 CCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80297402 CATTCGAATA
Statistics
Matches: 887, Mismatches: 14, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
39 10 0.01
40 876 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80301420 original size:27 final size:27
Alignment explanation
Indices: 80301389--80301596 Score: 272
Period size: 27 Copynumber: 7.7 Consensus size: 27
80301379 GGATATTACA
*
80301389 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
** * *
80301416 AGGGGTATTTTTATAATTTTATAAACA
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
80301443 AAGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
**
80301470 AGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
80301497 AAGGGTATTTTGGTAATTTTACGAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
80301524 AGGGGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** *
80301551 AACGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
80301578 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
80301597 GGTAAACTAA
Statistics
Matches: 152, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:80301603 original size:54 final size:54
Alignment explanation
Indices: 80301391--80301596 Score: 322
Period size: 54 Copynumber: 3.8 Consensus size: 54
80301381 ATATTACAAG
* * ** *
80301391 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTTATAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
80301445 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
80301499 GGGTATTTTGGTAATTTTACGAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
80301553 CGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
80301597 GGTAAACTAA
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 138 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:80308432 original size:17 final size:17
Alignment explanation
Indices: 80308410--80308454 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
80308400 ATCTGATATT
*
80308410 TGAAATGGAA-AATGATG
1 TGAAATGGAAGAA-AATG
80308427 TGAAATGGAAGTAAAATG
1 TGAAATGGAAG-AAAATG
80308445 TGAAATGGAA
1 TGAAATGGAA
80308455 TATGCAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 10 0.40
18 13 0.52
19 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (17 bp):
TGAAATGGAAGAAAATG
Found at i:80311047 original size:20 final size:20
Alignment explanation
Indices: 80311019--80311057 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80311009 CTAGGAACTA
80311019 TGTGATCTAAGCTCATGATT
1 TGTGATCTAAGCTCATGATT
* *
80311039 TGTGGTCTAAGTTCATGAT
1 TGTGATCTAAGCTCATGAT
80311058 ATATGTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (20 bp):
TGTGATCTAAGCTCATGATT
Found at i:80322790 original size:79 final size:82
Alignment explanation
Indices: 80322679--80322863 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
80322669 GCTACTCGTT
* *
80322679 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
80322742 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80322759 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
80322822 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80322839 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80322864 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:80322863 original size:40 final size:40
Alignment explanation
Indices: 80322660--80322863 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
80322650 CGGAATTTAA
** *
80322660 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80322700 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80322740 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80322779 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80322819 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80322859 CCGGA
1 CCGGA
80322864 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80330701 original size:40 final size:40
Alignment explanation
Indices: 80330664--80330847 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
80330654 GCTACTCGTT
*
80330664 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
80330704 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
80330744 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
80330783 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
80330824 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
80330848 ACATCATTCG
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80330766 original size:79 final size:81
Alignment explanation
Indices: 80330631--80330848 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 81
80330621 AAATCACGTA
** * *
80330631 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAAT
80330691 ATAGTAACTCGCACAAATG
64 -TAGTAACTCGCACAAATG
*
80330710 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGAATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
*
80330772 AGTATCTCGCACAAATG
65 AGTAACTCGCACAAATG
** * * *
80330789 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
80330849 CATCATTCGA
Statistics
Matches: 118, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 47 0.40
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
GTAACTCGCACAAATG
Found at i:80332045 original size:56 final size:56
Alignment explanation
Indices: 80331978--80332209 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
80331968 TATTAGTTTA
* *
80331978 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
80332034 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
80332090 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
80332146 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
80332202 TTGCCCAT
1 TTGCCCAT
80332210 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:80334696 original size:21 final size:21
Alignment explanation
Indices: 80334658--80334698 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80334648 TATGATATTT
*
80334658 TTATAAAGTATTACATTTTGG
1 TTATAAAGTAATACATTTTGG
* *
80334679 TTATAAATTAATATATTTTG
1 TTATAAAGTAATACATTTTG
80334699 TTTAATGAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (21 bp):
TTATAAAGTAATACATTTTGG
Found at i:80335194 original size:15 final size:15
Alignment explanation
Indices: 80335174--80335204 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80335164 ATTCTTTCTT
*
80335174 CATCTATTTTACATA
1 CATCTAATTTACATA
80335189 CATCTAATTTACATA
1 CATCTAATTTACATA
80335204 C
1 C
80335205 CTTTCTCTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (15 bp):
CATCTAATTTACATA
Found at i:80336156 original size:16 final size:16
Alignment explanation
Indices: 80336135--80336166 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80336125 TTTAATAAAG
*
80336135 GTCTTATAAAAATAGA
1 GTCTTAAAAAAATAGA
80336151 GTCTTAAAAAAATAGA
1 GTCTTAAAAAAATAGA
80336167 ATTTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (16 bp):
GTCTTAAAAAAATAGA
Found at i:80346562 original size:47 final size:46
Alignment explanation
Indices: 80346505--80346761 Score: 300
Period size: 47 Copynumber: 5.4 Consensus size: 46
80346495 ATTGATGTAC
* *
80346505 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTG
1 AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
80346551 CAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATAAAGGTG
1 -AAGTATATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
80346600 AACATATGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AA-GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * * *
80346647 AACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AA-GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
80346694 AA-CATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAGTAT--ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
80346741 AAAGTGTATAAATGTGATAAG
1 -AAGTATATATATGTGATAAG
80346762 TCCCGAAGGG
Statistics
Matches: 184, Mismatches: 19, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
47 141 0.77
48 4 0.02
49 38 0.21
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (46 bp):
AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
Found at i:80346757 original size:94 final size:93
Alignment explanation
Indices: 80346511--80346761 Score: 333
Period size: 94 Copynumber: 2.6 Consensus size: 93
80346501 GTACAAGTAT
* * * *
80346511 ATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGCAAGTATATATATGCGTGATAAGGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA-AT--GTGATAAGGC
*
80346576 CGAATGGCCAATGTGATAAAGGTGAACATAT
63 CGAATGGCCAATGTGATAAAGGTGAACATAC
* * *
80346607 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT-GTGTGATAAGGCC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTGTATAATGTGATAAGGCC
* * *
80346671 GAATGGCCAATGTGATGAATGTGAACATGC
64 GAATGGCCAATGTGATAAAGGTGAACATAC
*
80346701 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT-AATGTGATAAG
80346762 TCCCGAAGGG
Statistics
Matches: 136, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
92 6 0.04
93 1 0.01
94 85 0.62
96 38 0.28
97 1 0.01
98 5 0.04
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (93 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCGA
ATGGCCAATGTGATAAAGGTGAACATAC
Found at i:80349383 original size:22 final size:22
Alignment explanation
Indices: 80349343--80349384 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80349333 TGGTACTCTG
*
80349343 TTAGCCTTTGTGCTGTATTCTA
1 TTAGCCTTTGTGCTATATTCTA
80349365 TTAGCCTTTGTGGC-ATATTC
1 TTAGCCTTTGT-GCTATATTC
80349385 AATATGTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.48
Consensus pattern (22 bp):
TTAGCCTTTGTGCTATATTCTA
Found at i:80350981 original size:21 final size:21
Alignment explanation
Indices: 80350957--80350997 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80350947 AAAAATTTCA
*
80350957 CTTGACATAGGGGCACACGCT
1 CTTGACAAAGGGGCACACGCT
**
80350978 CTTGTGAAAGGGGCACACGC
1 CTTGACAAAGGGGCACACGC
80350998 CCGTGTGCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.17
Consensus pattern (21 bp):
CTTGACAAAGGGGCACACGCT
Found at i:80351004 original size:21 final size:21
Alignment explanation
Indices: 80350965--80351004 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80350955 CACTTGACAT
* *
80350965 AGGGGCACACGCTCTTGTGAA
1 AGGGGCACACGCCCGTGTGAA
80350986 AGGGGCACACGCCCGTGTG
1 AGGGGCACACGCCCGTGTG
80351005 CTAGGCCGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:80351942 original size:47 final size:48
Alignment explanation
Indices: 80351868--80352137 Score: 238
Period size: 46 Copynumber: 5.8 Consensus size: 48
80351858 GGTAAGGTGT
* * * * *
80351868 CGATGCCATGTCCTAGACACAGCCTTACTCTGGCTCAT-ATCTCAA-GT
1 CGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCATCATCTCAAGGC
* * **
80351915 CGATGCCATGTCCCAAACATGGTCTTACACTGGCT-ATCCTCTTGTA-GC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATC-TCAAGGC
* * *
80351963 CGATG-CATGTCCCAGACATGTCTTAAACTGGCTTA-CGTCTCAAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGGC
* * * *
80352009 CGATG-CATGTCCCAAACATGTCTTACACTAGC-CCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGGC
* **
80352055 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCAT-CTCAAGGC
*
80352103 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCA
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCA
80352138 CAAACGAATG
Statistics
Matches: 184, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 77 0.42
47 72 0.39
48 31 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGGC
Found at i:80352116 original size:94 final size:92
Alignment explanation
Indices: 80351907--80352134 Score: 252
Period size: 94 Copynumber: 2.4 Consensus size: 92
80351897 CTGGCTCATA
* * * * **
80351907 TCTCAA-GTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCCTCTTGTAGCCGATGCAT
1 TCTCAAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCCATCATCTAATAGCCGATGCAT
80351971 GTCCCAGACATGTCTTAAACTGGCTTACG
64 GTCCCAGACATGTCTTAAACTGGCTTACG
*
80352000 TCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCCCTCATCTCAAT-GCCGATGCCAT
1 TCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCCATCATCT-AATAGCCGATG-CAT
*
80352064 GTCCCAGACATGGTCTTACACTGGC-T-C-
64 GTCCCAGACAT-GTCTTAAACTGGCTTACG
*
80352091 TCAT-AATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 TC-TCAA---GGCCGATGCATGTCCCAAACATGTCTTACACTAGC
80352135 TCACAAACGA
Statistics
Matches: 118, Mismatches: 9, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
91 4 0.03
92 26 0.22
93 36 0.31
94 52 0.44
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (92 bp):
TCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCCATCATCTAATAGCCGATGCATGT
CCCAGACATGTCTTAAACTGGCTTACG
Found at i:80354194 original size:10 final size:10
Alignment explanation
Indices: 80354176--80354205 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
80354166 TGAGAATGAT
*
80354176 TTATTATATG
1 TTATAATATG
80354186 TTATAATATG
1 TTATAATATG
80354196 TTATAATATG
1 TTATAATATG
80354206 CATTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (10 bp):
TTATAATATG
Found at i:80359027 original size:21 final size:21
Alignment explanation
Indices: 80358976--80359030 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
80358966 GAAATTGCAG
*
80358976 CGAGGCTACCAGATATTGTGA
1 CGAGGCCACCAGATATTGTGA
* * *
80358997 CGAAGTCACCAGATATTGTGG
1 CGAGGCCACCAGATATTGTGA
*
80359018 CTAGGCCACCAGA
1 CGAGGCCACCAGA
80359031 ACAGTTATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (21 bp):
CGAGGCCACCAGATATTGTGA
Found at i:80359287 original size:26 final size:27
Alignment explanation
Indices: 80359251--80359326 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 27
80359241 TAAAATTAAC
* *
80359251 CCTAAGGGTATATTGGTCATTTT-GTA
1 CCTAGGGGTATATTGGTCATTTTCCTA
* *
80359277 CCTAGGGGTATAATGGTAATTTTCCCTA
1 CCTAGGGGTATATTGGTCATTTT-CCTA
* * *
80359305 CTTAGGGGTATTTTAGTCATTT
1 CCTAGGGGTATATTGGTCATTT
80359327 CAACAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 20 0.51
28 19 0.49
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (27 bp):
CCTAGGGGTATATTGGTCATTTTCCTA
Found at i:80359745 original size:11 final size:10
Alignment explanation
Indices: 80359720--80359749 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
80359710 AGTGTTGACT
80359720 TTTCGGTCAC
1 TTTCGGTCAC
80359730 TTTCGGTCAC
1 TTTCGGTCAC
80359740 TCTTCGGTCA
1 T-TTCGGTCA
80359750 TTACGGCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.10, C:0.30, G:0.20, T:0.40
Consensus pattern (10 bp):
TTTCGGTCAC
Found at i:80364116 original size:40 final size:40
Alignment explanation
Indices: 80364061--80364282 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
80364051 TATTCGAATG
* * *
80364061 ATATCTGGGCTAAGTCCCGAAGACATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
80364101 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
80364141 ATATCCGGGCCAAGTCCCGAAGGTATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
80364181 ATATCCGGGCTAAGACCCGAAGTCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
80364221 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
80364261 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80364283 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 150 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80366989 original size:46 final size:46
Alignment explanation
Indices: 80366936--80367150 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 46
80366926 TGTGAGCTAG
* *
80366936 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAA
* * * * * *
80366982 TGTAAGACCATGTCTGGGACATGGCATCAG-CA-TTGACACAAGGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATG--ACGAGAGCCAA
* * * * *
80367030 TGTAAGACATGTCTGGGACATGCATTGGCCTCAAGACGTA-AGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGACG-AGAGCCAA
* * * *
80367076 TGTAAGACATGTCTGGGACATGCATCGGCTACAGGATG-GTAGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAG-AGCCAA
*
80367122 TGTAAAACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
80367151 ACTTGAGATA
Statistics
Matches: 134, Mismatches: 24, Indels: 20
0.75 0.13 0.11
Matches are distributed among these distances:
46 62 0.46
47 46 0.34
48 26 0.19
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAA
Found at i:80367189 original size:140 final size:140
Alignment explanation
Indices: 80366934--80367191 Score: 378
Period size: 140 Copynumber: 1.8 Consensus size: 140
80366924 TGTGTGAGCT
** *
80366934 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGGATGAGAGCCAATGTAAAACCATGTCTGG
* *
80366999 GACATGGCATCAGCATTGACACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCAA
66 GACATGGCATCAGCATTGACACAAGAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCAA
80367064 GACGTAAGTC
131 GACGTAAGTC
* *
80367074 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGGATG-GTAGTCAATGTAAAACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGGATGAG-AGCCAATGTAAAACCATGTCTG
* * *
80367138 GGACATGGCATC-G-ACTTGAGATATGAGCTAGTGTAAGACCATGTCTAGGACATG
65 GGACATGGCATCAGCA-TTGACACAAGAGCTAGTGTAAGA-CATGTCTAGGACATG
80367192 GCATCGGCAC
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
138 1 0.01
139 21 0.20
140 83 0.79
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGGATGAGAGCCAATGTAAAACCATGTCTGG
GACATGGCATCAGCATTGACACAAGAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCAA
GACGTAAGTC
Found at i:80371548 original size:55 final size:53
Alignment explanation
Indices: 80371436--80371623 Score: 175
Period size: 55 Copynumber: 3.5 Consensus size: 53
80371426 AACTTACCAT
* * * * ** *
80371436 TGCCATGTCTTGACATGGTCTTACGTGGAATCCTTGACTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATTG-ATCCTTTCCTTATAGAACTCATCAA
* *
80371489 TGCCATGCCTTGGCATGGTATTACATTGGA-CCTTTGTCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATT-GATCCTTT-CCTTATAG-AACTCATCAA
** * *
80371544 TGCCATGTATTGACATGGTCTTACA-TGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATTGA--TCCTTTCCTTATAGAACTCATCAA
*
80371598 TTCCATGCCTTGGCATGGTCTTACAT
1 TGCCATGCCTTGGCATGGTCTTACAT
80371624 GATATCCTTA
Statistics
Matches: 109, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
52 4 0.04
53 30 0.28
54 33 0.30
55 37 0.34
56 5 0.05
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (53 bp):
TGCCATGCCTTGGCATGGTCTTACATTGATCCTTTCCTTATAGAACTCATCAA
Found at i:80371617 original size:54 final size:54
Alignment explanation
Indices: 80371436--80371632 Score: 188
Period size: 54 Copynumber: 3.6 Consensus size: 54
80371426 AACTTACCAT
* * ** *
80371436 TGCCATGTCTTGACATGGTCTTACGTGGAATCCTTGACTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGAATCCTTTCCTTATAGAACTCATCAA
* * *
80371489 TGCCATGCCTTGGCATGGTATTACATTGG-A-CCTTTGTCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACA-TGGAATCCTTT-CCTTATAG-AACTCATCAA
** * *
80371544 TGCCATGTATTGACATGGTCTTACAT-GATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGA-ATCCTTTCCTTATAGAACTCATCAA
* *
80371598 TTCCATGCCTTGGCATGGTCTTACAT-GATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGA-ATCCTT
80371633 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
52 4 0.03
53 28 0.24
54 44 0.37
55 37 0.31
56 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGAATCCTTTCCTTATAGAACTCATCAA
Found at i:80371891 original size:44 final size:44
Alignment explanation
Indices: 80371822--80371908 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
80371812 GTATCCTTAA
* *
80371822 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* * *
80371866 CCGTCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
80371909 GAGATATCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:80381348 original size:21 final size:21
Alignment explanation
Indices: 80381318--80381357 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
80381308 CACTTAACAT
80381318 AGGGGCACACGCCCATGTGAA
1 AGGGGCACACGCCCATGTGAA
*
80381339 AGGGGTACACGCCCATGTG
1 AGGGGCACACGCCCATGTG
80381358 GCCAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGAA
Found at i:80382740 original size:47 final size:44
Alignment explanation
Indices: 80382591--80382763 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 44
80382581 TCTCGTAGCT
* * * *
80382591 GATGCATGTCCCAGACATGTCTTATACTGGCTTACGTCTCGAGGCCA
1 GATGCATGTCCCAAACATGTCTTACACTGGC-T-CGTCTCAATG-CA
*
80382638 -ATGCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTCAATGCA
1 GATGCATGTCCCAAACATGTCTTACACT-G-GCTCGTCTCAATGCA
*
80382683 GATGCTATGTCCCAAACATGGTCTTACACTGGCTC-TCAT-AATGTGGCT
1 GATGC-ATGTCCCAAACAT-GTCTTACACTGGCTCGTC-TCAA--T-GCA
* *
80382731 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAAACATGTCTTACACTGGCTC
80382764 ACACACGAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
45 6 0.06
46 55 0.51
47 29 0.27
48 18 0.17
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTCGTCTCAATGCA
Found at i:80385091 original size:8 final size:8
Alignment explanation
Indices: 80385078--80385108 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
80385068 ACGGCCAATA
80385078 TATATATG
1 TATATATG
80385086 TATATATG
1 TATATATG
*
80385094 TGTATATG
1 TATATATG
80385102 TATATAT
1 TATATAT
80385109 ACATATATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (8 bp):
TATATATG
Found at i:80385091 original size:10 final size:10
Alignment explanation
Indices: 80385075--80385160 Score: 82
Period size: 10 Copynumber: 8.6 Consensus size: 10
80385065 CACACGGCCA
80385075 ATATATATAT
1 ATATATATAT
* *
80385085 GTATATATGT
1 ATATATATAT
* *
80385095 GTATATGTAT
1 ATATATATAT
*
80385105 ATATACATAT
1 ATATATATAT
*
80385115 ATACATATAT
1 ATATATATAT
* *
80385125 ACATATATAC
1 ATATATATAT
*
80385135 ATATATACAT
1 ATATATATAT
*
80385145 ATATACATAT
1 ATATATATAT
80385155 ATATAT
1 ATATAT
80385161 TCCTTATCAT
Statistics
Matches: 58, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
10 58 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (10 bp):
ATATATATAT
Found at i:80385114 original size:8 final size:8
Alignment explanation
Indices: 80385103--80385157 Score: 110
Period size: 8 Copynumber: 6.9 Consensus size: 8
80385093 GTGTATATGT
80385103 ATATATAC
1 ATATATAC
80385111 ATATATAC
1 ATATATAC
80385119 ATATATAC
1 ATATATAC
80385127 ATATATAC
1 ATATATAC
80385135 ATATATAC
1 ATATATAC
80385143 ATATATAC
1 ATATATAC
80385151 ATATATA
1 ATATATA
80385158 TATTCCTTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 47 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATATAC
Found at i:80389248 original size:84 final size:84
Alignment explanation
Indices: 80389135--80389289 Score: 217
Period size: 84 Copynumber: 1.8 Consensus size: 84
80389125 ACTAGTCGCT
*
80389135 TTAAAAATCATATCTTGAGTTTAGAAACTC-AGAATCCAG-TTCCGTAAATTTTCCCTGAAACTA
1 TTAAAAATCATATCTTGAGTTTAGAAACTCGAAAAT-CAGCTT-CGTAAATTTTCCCTGAAACTA
*
80389198 GACTCATACGTCACTGTCACC
64 GACACATACGTCACTGTCACC
* * *
80389219 TTAAAAATCATATCTTGAGTTTCA-CAACTCGAAAATCAGCTTCGTGATTTTTCCCTGAAACTAG
1 TTAAAAATCATATCTTGAGTTT-AGAAACTCGAAAATCAGCTTCGTAAATTTTCCCTGAAACTAG
80389283 ACACATA
65 ACACATA
80389290 TATACATCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
84 56 0.89
85 7 0.11
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.32
Consensus pattern (84 bp):
TTAAAAATCATATCTTGAGTTTAGAAACTCGAAAATCAGCTTCGTAAATTTTCCCTGAAACTAGA
CACATACGTCACTGTCACC
Found at i:80390508 original size:40 final size:40
Alignment explanation
Indices: 80390452--80390655 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
80390442 CGGAATTTAA
** *
80390452 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80390492 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80390532 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80390571 TC-GAAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
80390611 CCGGATATAGTAACTTAGCACAAA-GGCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80390651 CCGGA
1 CCGGA
80390656 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.03
39 29 0.21
40 91 0.66
41 14 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80390590 original size:79 final size:80
Alignment explanation
Indices: 80390499--80390650 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 80
80390489 AGCCCGGTTA
* * *
80390499 TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
80390562 GGG-CTTAGCTCGAAAT
64 GGGACTTAGCTCGAAAT
* * *
80390578 TAGTATCTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTAGCACAAAGGCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
80390643 GACTTAGC
66 GACTTAGC
80390651 CCGGACATCA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.05
79 47 0.73
80 14 0.22
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCTCGAAAT
Found at i:80393494 original size:27 final size:27
Alignment explanation
Indices: 80393440--80393495 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
80393430 GTTTTGGACC
* **
80393440 TAATATAAAGACAATTAAAATATTATA
1 TAATATAAAAACAATTAAAATACAATA
* *
80393467 TAATATAAAAATAATTTAAATACAATA
1 TAATATAAAAACAATTAAAATACAATA
80393494 TA
1 TA
80393496 GATCTATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (27 bp):
TAATATAAAAACAATTAAAATACAATA
Found at i:80409505 original size:24 final size:23
Alignment explanation
Indices: 80409468--80409513 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
80409458 ATAAATGGTA
80409468 TTTTAGTAATAATATAAGTATATT
1 TTTTAGTAATAATA-AAGTATATT
*
80409492 TTTTA-TAATAAATAAATTATAT
1 TTTTAGTAAT-AATAAAGTATAT
80409514 AAAGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
TTTTAGTAATAATAAAGTATATT
Found at i:80411316 original size:84 final size:84
Alignment explanation
Indices: 80411198--80411442 Score: 399
Period size: 84 Copynumber: 2.9 Consensus size: 84
80411188 GATCTGCTAC
* *
80411198 ATTTGAGAAC-TTTTGAGAGTCAAATCTGCTATGTCCTCGATTT-TTCCCTTGTAAGCACATGGA
1 ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTT-CCTTGTAAGCACATGGA
80411261 TGCCAAACCATCTTGAGTCT
65 TGCCAAACCATCTTGAGTCT
* *
80411281 ATTTGAGAACATTTTGAGAGTCATATTTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACATGGAT
80411346 GCCAAACCATCTTGAGTCT
66 GCCAAACCATCTTGAGTCT
*
80411365 GTTTGAGAACA-TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAT-GA
1 ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC-ATGGA
80411428 TGCCAAACCATCTTG
65 TGCCAAACCATCTTG
80411443 GATCTGCTTC
Statistics
Matches: 152, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
83 73 0.48
84 77 0.51
85 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (84 bp):
ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACATGGAT
GCCAAACCATCTTGAGTCT
Found at i:80411424 original size:83 final size:83
Alignment explanation
Indices: 80411198--80411442 Score: 402
Period size: 83 Copynumber: 2.9 Consensus size: 83
80411188 GATCTGCTAC
* * * *
80411198 ATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTT-TTCCCTTGTAAGCACATGGAT
1 ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTT-CCTTGTAAGCACAAGGAT
80411262 GCCAAACCATCTTGAGTCT
65 GCCAAACCATCTTGAGTCT
*
80411281 ATTTGAGAACATTTTGAGAGTCATATTTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 ATTTGAGAACA-TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
80411346 GCCAAACCATCTTGAGTCT
65 GCCAAACCATCTTGAGTCT
* *
80411365 GTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAATGATG
1 ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
80411430 CCAAACCATCTTG
66 CCAAACCATCTTG
80411443 GATCTGCTTC
Statistics
Matches: 152, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
83 75 0.49
84 75 0.49
85 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (83 bp):
ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
CCAAACCATCTTGAGTCT
Found at i:80411579 original size:119 final size:119
Alignment explanation
Indices: 80411366--80411598 Score: 317
Period size: 119 Copynumber: 2.0 Consensus size: 119
80411356 CTTGAGTCTG
* * * *
80411366 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAATGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAATGATAC
**
80411431 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGT-TAGATCTGCTATA
66 CAAACCATCTTGGATCTGCTTCAACATAAACATCTGAA-GTCTAGATCTGCTATA
* * *
80411485 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAA-GAATA
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAATG-ATA
** **
80411549 CCAAATTATCTTGGATCTGCTTCAACATAAATGTCTGAAGTCTAGATCTG
65 CCAAACCATCTTGGATCTGCTTCAACATAAACATCTGAAGTCTAGATCTG
80411599 TTGTCTTCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
118 3 0.03
119 96 0.97
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAATGATAC
CAAACCATCTTGGATCTGCTTCAACATAAACATCTGAAGTCTAGATCTGCTATA
Found at i:80423716 original size:198 final size:198
Alignment explanation
Indices: 80423378--80423771 Score: 752
Period size: 198 Copynumber: 2.0 Consensus size: 198
80423368 AGTCGCTTAT
*
80423378 GTTTTGAAAACCTTTAAAAACTTAGAAGGATACTTGACTATTCTGACTTAACGAGAAGAGTCGCA
1 GTTTTGAAAACCTTTAAAAACTTAGAAGGATACTTGACTATTCTAACTTAACGAGAAGAGTCGCA
* *
80423443 ACCCAATAAGTTAGGGCACTACTTTTTCGAATTTTCCAAACACCAAGCATTGCCTTTATATTTTC
66 ACCCAATAAGTTAGGGCACTACTTTTTCGAAATTTCCAAACACCAAGCATTGCCTTTAAATTTTC
*
80423508 CGAAAATTTTGGAGCCTTGTCTTTTTAAAGATGATGCGTAGGGAATTGTATTACATTATAAATCA
131 CAAAAATTTTGGAGCCTTGTCTTTTTAAAGATGATGCGTAGGGAATTGTATTACATTATAAATCA
80423573 TGC
196 TGC
80423576 GTTTTGAAAACCTTTAAAAACTTAGAAGGATACTTGACTATTCTAACTTAACGAGAAGAGTCGCA
1 GTTTTGAAAACCTTTAAAAACTTAGAAGGATACTTGACTATTCTAACTTAACGAGAAGAGTCGCA
80423641 ACCCAATAAGTTAGGGCACTACTTTTTCGAAATTTCCAAACACCAAGCATTGCCTTTAAATTTTC
66 ACCCAATAAGTTAGGGCACTACTTTTTCGAAATTTCCAAACACCAAGCATTGCCTTTAAATTTTC
80423706 CAAAAATTTTGGAGCCTTGTCTTTTTAAAGATGATGCGTAGGGAATTGTATTACATTATAAATCA
131 CAAAAATTTTGGAGCCTTGTCTTTTTAAAGATGATGCGTAGGGAATTGTATTACATTATAAATCA
80423771 T
196 T
80423772 ACATAGTAAC
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
198 192 1.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (198 bp):
GTTTTGAAAACCTTTAAAAACTTAGAAGGATACTTGACTATTCTAACTTAACGAGAAGAGTCGCA
ACCCAATAAGTTAGGGCACTACTTTTTCGAAATTTCCAAACACCAAGCATTGCCTTTAAATTTTC
CAAAAATTTTGGAGCCTTGTCTTTTTAAAGATGATGCGTAGGGAATTGTATTACATTATAAATCA
TGC
Found at i:80424557 original size:20 final size:21
Alignment explanation
Indices: 80424501--80424561 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
80424491 ACATGCAACG
*
80424501 TGATAAATATAAATTAAAAAAA
1 TGATAAAT-TAATTTAAAAAAA
* *
80424523 TGA-AAATAAACTTTAAAAATA
1 TGATAAATTAA-TTTAAAAAAA
80424544 T-ATAAATTAATTTAAAAA
1 TGATAAATTAATTTAAAAA
80424562 GTAAGTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 11 0.33
21 19 0.58
22 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (21 bp):
TGATAAATTAATTTAAAAAAA
Found at i:80424702 original size:16 final size:16
Alignment explanation
Indices: 80424680--80424726 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
80424670 TGAAAAATAT
*
80424680 AAAAAATATAAATTTA
1 AAAAAATATAAAATTA
*
80424696 TAAAAATATATACAATTA
1 -AAAAA-ATATAAAATTA
80424714 AAAAAATATAAAA
1 AAAAAATATAAAA
80424727 AGGCCTGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 7 0.27
17 10 0.38
18 9 0.35
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAATATAAAATTA
Found at i:80424706 original size:18 final size:18
Alignment explanation
Indices: 80424677--80424723 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
80424667 ATTTGAAAAA
80424677 TATAAAAA-ATATA-AATT
1 TATAAAAATATATACAA-T
80424694 TATAAAAATATATACAAT
1 TATAAAAATATATACAAT
*
80424712 TAAAAAAATATA
1 TATAAAAATATA
80424724 AAAAGGCCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 8 0.30
18 17 0.63
19 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
TATAAAAATATATACAAT
Found at i:80430774 original size:19 final size:19
Alignment explanation
Indices: 80430750--80430828 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
80430740 AATCTTTAAG
80430750 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80430769 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80430788 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
80430805 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
80430826 GAT
1 GAT
80430829 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80430780 original size:36 final size:34
Alignment explanation
Indices: 80430740--80430831 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 34
80430730 ATGGAAATAT
*
80430740 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTGAA-GATATG-AATCTTAGATATGATATGC
80430776 AATCTTAGATATGATAT-AATCTTAGATATGATATGC
1 AATCTT-GA-A-GATATGAATCTTAGATATGATATGC
80430812 AATCTTGAAGATATG-ATCTT
1 AATCTTGAAGATATGAATCTT
80430832 GTAATCTTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
33 10 0.20
34 1 0.02
35 2 0.04
36 31 0.61
37 1 0.02
38 6 0.12
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (34 bp):
AATCTTGAAGATATGAATCTTAGATATGATATGC
Found at i:80430840 original size:22 final size:20
Alignment explanation
Indices: 80430750--80430845 Score: 94
Period size: 19 Copynumber: 4.9 Consensus size: 20
80430740 AATCTTTAAG
*
80430750 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
80430769 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
80430788 GATA--TAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
80430805 GATATGCAATCTTGAAGATAT
1 GATATGTAATCTTG-AGATAT
*
80430826 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTT-GAGAT
80430846 TTAATTTGTA
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.24
19 29 0.43
21 9 0.13
22 12 0.18
23 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (20 bp):
GATATGTAATCTTGAGATAT
Found at i:80435282 original size:49 final size:47
Alignment explanation
Indices: 80435233--80435347 Score: 149
Period size: 47 Copynumber: 2.4 Consensus size: 47
80435223 TAAATGTGAA
* * *
80435233 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
* * * * *
80435280 AAAGCGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
*
80435327 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
80435348 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
Found at i:80440500 original size:1 final size:1
Alignment explanation
Indices: 80440494--80440564 Score: 52
Period size: 1 Copynumber: 71.0 Consensus size: 1
80440484 ACTTCTATTT
* * * * * * * * *
80440494 AAAAAAAAAGAAAAAGAAAAGAAAAAGAGAAAAAAATATAAAAAGAAAAAAAAGAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
80440559 GAAAAA
1 AAAAAA
80440565 TGGAGAGGCC
Statistics
Matches: 50, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (1 bp):
A
Found at i:80440513 original size:11 final size:10
Alignment explanation
Indices: 80440494--80440564 Score: 70
Period size: 11 Copynumber: 6.5 Consensus size: 10
80440484 ACTTCTATTT
80440494 AAAAAAAAAG
1 AAAAAAAAAG
80440504 AAAAAGAAAAG
1 AAAAA-AAAAG
*
80440515 AAAAAGAGAAAA
1 AAAAA-A-AAAG
80440527 AAATATAAAAAG
1 AAA-A-AAAAAG
*
80440539 AAAAAAAAGAA
1 AAAAAAAA-AG
80440550 AAAAAAAAAG
1 AAAAAAAAAG
80440560 AAAAA
1 AAAAA
80440565 TGGAGAGGCC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
10 15 0.29
11 22 0.42
12 12 0.23
13 2 0.04
14 1 0.02
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:80440557 original size:29 final size:28
Alignment explanation
Indices: 80440494--80440564 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
80440484 ACTTCTATTT
*
80440494 AAAAAAAAAGAAAAAGAAAAGAAAAAGAG
1 AAAAAAAAAGAAAAAGAAAAGAAAAA-AA
* * *
80440523 AAAAAAATATAAAAAGAAAA-AAAAGAA
1 AAAAAAAAAGAAAAAGAAAAGAAAAAAA
80440550 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
80440565 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 14 0.39
28 4 0.11
29 18 0.50
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (28 bp):
AAAAAAAAAGAAAAAGAAAAGAAAAAAA
Found at i:80441867 original size:205 final size:205
Alignment explanation
Indices: 80441507--80442669 Score: 1879
Period size: 205 Copynumber: 5.7 Consensus size: 205
80441497 GTAGATCTGG
* *
80441507 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATGGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
80441572 GATTTGGTTTTCACGTGCTTATGCTGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
80441637 AGAACAAATCGAAGTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
80441702 AGATGTTTATA
195 AGATGTTTATA
* * *
80441713 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTTTGCTTACAAGGAACAAATCGCAGACATAGCTA
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * *
80441778 ATTTAGCTTTCACGTGTTTACGCTAAAACAAATCAAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* ** *
80441843 GAACAAATCGAAGCCTGGCATCTCCATTTCGATAGAGAGCAGATACATAGCAGATCTAACCTTCG
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
80441908 GATGTTTATA
196 GATGTTTATA
* *
80441918 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATGGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
80441983 ATTTGGTTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
80442048 GAACAAATCAAAGTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
80442113 GATGTTTATA
196 GATGTTTATA
* *
80442123 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAACAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
80442188 ATTTGACTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
80442253 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
80442318 GATGTTTATA
196 GATGTTTATA
* *
80442328 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTTCTTACAAGGAACAAATCGAAG-CATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
80442392 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAAA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
80442457 GAAAAAATCAAAGTCTGGCATCTCCATTTCAATGGAGAGCAGATACATAGCAGATCAAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
80442522 GATG-----A
196 GATGTTTATA
*
80442527 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
80442592 ATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
80442657 GAACAAATCGAAG
131 GAACAAATCGAAG
80442670 AAACAGATTT
Statistics
Matches: 888, Mismatches: 68, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
199 55 0.06
200 77 0.09
204 134 0.15
205 615 0.69
206 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
GATGTTTATA
Found at i:80442912 original size:261 final size:261
Alignment explanation
Indices: 80442526--80443013 Score: 701
Period size: 261 Copynumber: 1.9 Consensus size: 261
80442516 CCTTCAGATG
* * * *
80442526 ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGCA
* * ** * * * *
80442591 GATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
66 GATTTGGCTTTCACGTGCTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCAG
* *
80442656 AGAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGGCAGAGAGCAGATCAAAGATATCAA
131 AAAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACAGAGAGCAGATCAAAGATATCAA
80442721 CAGGACAGTCATAAGTTTACAA-GAAGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATT
196 CAGGACAGTCATAAGTTTACAATG-AGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATT
80442785 TT
260 TT
* *
80442787 ACTGAAGCAGATCTAAGATGATTTGGCATCCTTGTG-TTCACAAGGAGCAAATCGAAGACACAGC
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTT-ACAAGGAACAAATCGAAGACACAGC
*
80442851 AGATTTGGCTTTCACGTGTTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCA
65 AGATTTGGCTTTCACGTGCTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCA
* * * * * *
80442916 GAAAACAAATCGAAGAAGCAGATTTGGCGTCTTTGTGTTTGACGGAGAGCAGATCGAAGATATCA
130 GAAAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACAGAGAGCAGATCAAAGATATCA
* * * *
80442981 ACATGACAGTCTTGAGTTTGCAATGAGCAGATT
195 ACAGGACAGTCATAAGTTTACAATGAGCAGATT
80443014 GAGGACCATG
Statistics
Matches: 198, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
260 2 0.01
261 195 0.98
262 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (261 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGCA
GATTTGGCTTTCACGTGCTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCAG
AAAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACAGAGAGCAGATCAAAGATATCAA
CAGGACAGTCATAAGTTTACAATGAGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATTT
T
Found at i:80443322 original size:19 final size:19
Alignment explanation
Indices: 80443298--80443358 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
80443288 AATCTTTAAG
80443298 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80443317 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80443336 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
80443353 GATATG
1 GATATG
80443359 ATATGATATG
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.41
19 24 0.59
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80447309 original size:55 final size:54
Alignment explanation
Indices: 80447220--80447475 Score: 235
Period size: 55 Copynumber: 4.8 Consensus size: 54
80447210 CATTAGGGTT
* **
80447220 CAAGGATACCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGG
* * ** * *
80447275 CAAGGAAATCATGTAAGACCATGTTAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * *
80447330 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGG
* * *
80447383 CAAGGCTACCATGTGAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
80447433 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
80447476 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 40 0.24
54 12 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:80447427 original size:108 final size:110
Alignment explanation
Indices: 80447228--80447428 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
80447218 TTCAAGGATA
* * *
80447228 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
80447293 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** *
80447338 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTGAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
80447400 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
80447429 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 25 0.31
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:80454833 original size:55 final size:54
Alignment explanation
Indices: 80454744--80454999 Score: 235
Period size: 55 Copynumber: 4.8 Consensus size: 54
80454734 CATTAGGGTT
* **
80454744 CAAGGATACCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGG
* * ** * *
80454799 CAAGGAAATCATGTAAGACCATGTTAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * *
80454854 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGG
* * *
80454907 CAAGGCTACCATGTGAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
80454957 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
80455000 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 40 0.24
54 12 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:80454951 original size:108 final size:110
Alignment explanation
Indices: 80454752--80454952 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
80454742 TTCAAGGATA
* * *
80454752 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
80454817 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** *
80454862 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTGAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
80454924 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
80454953 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 25 0.31
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:80455217 original size:16 final size:16
Alignment explanation
Indices: 80455196--80455226 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80455186 ATAATTTTGA
80455196 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
80455212 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
80455227 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:80456872 original size:21 final size:18
Alignment explanation
Indices: 80456822--80456867 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
80456812 ATGACTTTTA
80456822 AATAATATTTT--TAAGT
1 AATAATATTTTAATAAGT
80456838 AATAATATTTTAATAAGT
1 AATAATATTTTAATAAGT
80456856 AATAATATTTTA
1 AATAATATTTTA
80456868 TTAATTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 11 0.39
18 17 0.61
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (18 bp):
AATAATATTTTAATAAGT
Found at i:80459487 original size:89 final size:89
Alignment explanation
Indices: 80459336--80459600 Score: 379
Period size: 89 Copynumber: 3.0 Consensus size: 89
80459326 GCACTTTCAT
** * * *
80459336 ATGATGTCATAGTGTCTTTCATCTATAGTCTTACTCATTTATATCATGATGCCATATTATCTTTC
1 ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
80459401 AGCTATGGTCTTACTCATTTTATC
66 AGCTATGGTCTTACTCATTTTATC
* *
80459425 ATGATGTCATAGCATCTTTCAGCTATAGTCTTACTCATTTTTATCATGATGTCATATCATCTTTC
1 ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
*
80459490 AGCTATGGTATTACTCACTTTTATC
66 AGCTATGGTCTTACTCA-TTTTATC
* * * * * *
80459515 ATGATGCCATAACATCTTTCAACTATGGTCTTACTTATTTTTATCATGATGCCATAGCATCTTTT
1 ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
80459580 AGCTA-GGTTCTTACTCATTTT
66 AGCTATGG-TCTTACTCATTTT
80459601 TAGGCGTATA
Statistics
Matches: 158, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
89 81 0.51
90 77 0.49
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.45
Consensus pattern (89 bp):
ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
AGCTATGGTCTTACTCATTTTATC
Found at i:80459601 original size:45 final size:45
Alignment explanation
Indices: 80459336--80459602 Score: 349
Period size: 45 Copynumber: 6.0 Consensus size: 45
80459326 GCACTTTCAT
* ** * * *
80459336 ATGATGTCATAGTGTCTTTCATCTATAGTCTTACTCATTTATATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
**
80459381 ATGATGCCATATTATCTTTCAGCTATGGTCTTACTCA-TTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* *
80459425 ATGATGTCATAGCATCTTTCAGCTATAGTCTTACTCATTTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * * *
80459470 ATGATGTCATATCATCTTTCAGCTATGGTATTACTCACTTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * *
80459515 ATGATGCCATAACATCTTTCAACTATGGTCTTACTTATTTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
*
80459560 ATGATGCCATAGCATCTTTTAGCTA-GGTTCTTACTCATTTTTA
1 ATGATGCCATAGCATCTTTCAGCTATGG-TCTTACTCATTTTTA
80459603 GGCGTATAGC
Statistics
Matches: 196, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
44 41 0.21
45 155 0.79
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.45
Consensus pattern (45 bp):
ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
Found at i:80462160 original size:16 final size:18
Alignment explanation
Indices: 80462127--80462166 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
80462117 ACGAAATTAG
*
80462127 AATTTGATTGAGAAAATT
1 AATTTAATTGAGAAAATT
80462145 -ATTTAATTGA-AAAATT
1 AATTTAATTGAGAAAATT
80462161 AATTTA
1 AATTTA
80462167 TTTAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (18 bp):
AATTTAATTGAGAAAATT
Found at i:80468173 original size:27 final size:27
Alignment explanation
Indices: 80468138--80468190 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
80468128 TGTCGTATAA
*
80468138 CATATAATGCGATAAAATCGCTAATCT
1 CATATAATGCGATAAAATCGCCAATCT
*
80468165 CATATAATGTGATAAAATCGCCAATC
1 CATATAATGCGATAAAATCGCCAATC
80468191 CCCTCGGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (27 bp):
CATATAATGCGATAAAATCGCCAATCT
Found at i:80469477 original size:226 final size:226
Alignment explanation
Indices: 80469074--80469534 Score: 778
Period size: 226 Copynumber: 2.0 Consensus size: 226
80469064 CTTTACTGAG
* * *
80469074 GATTTGGAGCATTTGGGTCAGCACCTAACATATTTAAATACTGAAAATTTAGTATCTAATCTCAA
1 GATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTCAA
* * * *
80469139 TAAAAGTCCTTCATTTAATCAATCCATAATATTTTTCCGAGATCTATGTTGAAACAACAAACTAG
66 TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
* *
80469204 TTTGCGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTGAATACTCAAGAATA
131 TTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTAAATACTCAAGAATA
*
80469269 ATTTTTCCTCATTAAAACATGTTTCAAGTAT
196 ATTTTTCCTAATTAAAACATGTTTCAAGTAT
* *
80469300 GATTTGGAGCATTTGGGTCAACACTTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTTAA
1 GATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTCAA
80469365 TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
66 TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
* *
80469430 TTTACGATTACCCTCACTTACGCTTCCCAAATTTTCAAATTTGATTTGCTAAATACTCAAGAATA
131 TTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTAAATACTCAAGAATA
*
80469495 ATTTTTCCTAATTAAAACATGTTTCAAGTCT
196 ATTTTTCCTAATTAAAACATGTTTCAAGTAT
*
80469526 GATTAGGAG
1 GATTTGGAG
80469535 GGATTCAAGA
Statistics
Matches: 219, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
226 219 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (226 bp):
GATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTCAA
TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
TTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTAAATACTCAAGAATA
ATTTTTCCTAATTAAAACATGTTTCAAGTAT
Found at i:80471384 original size:40 final size:40
Alignment explanation
Indices: 80471354--80471523 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
80471344 GGACTAAGAT
* *
80471354 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
80471394 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
80471434 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
80471474 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
80471513 CCGAAGGCATT
1 CCGAAGGCATT
80471524 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:80471450 original size:80 final size:79
Alignment explanation
Indices: 80471301--80471523 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 79
80471291 TTGAATGCTG
* * * * * * * * *
80471301 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
80471365 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
80471381 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
80471446 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
80471461 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
80471524 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 82 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:80471543 original size:79 final size:80
Alignment explanation
Indices: 80471376--80471558 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
80471366 GTGCGAGATA
* * *
80471376 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
80471441 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
80471456 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
80471520 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
80471535 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
80471559 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:80479334 original size:40 final size:39
Alignment explanation
Indices: 80479303--80479512 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
80479293 GGACTAAGAT
* *
80479303 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
80479343 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
80479383 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
80479423 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
80479463 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
80479502 CCGAAGGCATT
1 CCGAAGGCATT
80479513 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:80479466 original size:120 final size:120
Alignment explanation
Indices: 80479250--80479512 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
80479240 TTGAATGCTG
* *
80479250 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
80479314 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
80479370 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
80479433 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
80479489 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80479513 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:80479532 original size:79 final size:80
Alignment explanation
Indices: 80479251--80479547 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
80479241 TGAATGCTGT
* ** * * * **
80479251 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
80479314 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
80479331 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
80479395 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
80479411 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
80479475 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
80479490 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
80479548 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:80484966 original size:40 final size:40
Alignment explanation
Indices: 80484916--80485023 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
80484906 CTAGCATGAT
* *
80484916 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATAACACCAGCACGAA
** * *
80484956 TTTTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
80484996 TGCTCCTTGGGACTTAGCCCGTGATATA
1 TGCTCCTCGGGACTTAGCCCG-GATATA
80485024 CTCCTCGGGA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
40 52 0.90
41 6 0.10
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:80485027 original size:26 final size:25
Alignment explanation
Indices: 80484998--80485048 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
80484988 AGCACGAATG
*
80484998 CTCCTTGGGACTTAGCCCGTGATATA
1 CTCCTCGGGACTTAGCCCG-GATATA
80485024 CTCCTCGGGACTTAGCCCGGATATA
1 CTCCTCGGGACTTAGCCCGGATATA
80485049 TCACTAGCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (25 bp):
CTCCTCGGGACTTAGCCCGGATATA
Found at i:80485065 original size:66 final size:65
Alignment explanation
Indices: 80484959--80485088 Score: 242
Period size: 66 Copynumber: 2.0 Consensus size: 65
80484949 GCACGAATTT
*
80484959 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTTGGGACTTAGCCCGTGATATA
1 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCG-GATATA
80485024 C
65 C
80485025 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
80485089 TCACTAGCAC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
65 6 0.10
66 57 0.90
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (65 bp):
TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATAC
Found at i:80485079 original size:40 final size:40
Alignment explanation
Indices: 80485024--80485250 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
80485014 CCGTGATATA
80485024 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
80485064 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACAAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
80485104 CTCTTCGAGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
80485144 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
80485184 CTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
80485223 CTCTTCGGGACTTAGCCCGGATATATCA
1 CTCCTCGGGACTTAGCCCGGATATATCA
80485251 TTCTCAATTC
Statistics
Matches: 177, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 38 0.21
40 139 0.79
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:80485116 original size:106 final size:105
Alignment explanation
Indices: 80484922--80485128 Score: 326
Period size: 106 Copynumber: 2.0 Consensus size: 105
80484912 TGATTGCTCT
**
80484922 TCGGGACCTAGCCCGGATATAACACCAGCACGAATTTTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
* *
80484987 TAGCACGAATGCTCCTTGGGACTTAGCCCGTGATATACTCC
66 TAGCACAAATGCTCCTTGAGACTTAGCCCG-GATATACTCC
* * *
80485028 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
80485093 TAGCACAAATGCT-CTTCGAGACTTAGCCCGGATATA
66 TAGCACAAATGCTCCTT-GAGACTTAGCCCGGATATA
80485129 TCACTAGCAT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
105 9 0.10
106 84 0.90
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (105 bp):
TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
TAGCACAAATGCTCCTTGAGACTTAGCCCGGATATACTCC
Found at i:80486580 original size:37 final size:37
Alignment explanation
Indices: 80486521--80486629 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
80486511 AGCTCAGACG
* * *
80486521 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80486558 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80486595 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80486630 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:80486830 original size:48 final size:48
Alignment explanation
Indices: 80486776--80486897 Score: 208
Period size: 48 Copynumber: 2.5 Consensus size: 48
80486766 GCACATCGCC
*
80486776 TACATATTTCACACTAGTCATTCGGCTTCACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTCACCACATATACATATCTCA
*
80486824 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTCACCACATATACATATCTCA
* *
80486872 TACATGTTTCACATTAGCCATTCGGC
1 TACATATTTCACACTAGCCATTCGGC
80486898 CTTATCACAC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTCACCACATATACATATCTCA
Found at i:80486939 original size:47 final size:47
Alignment explanation
Indices: 80486880--80486997 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
80486870 CATACATGTT
* *
80486880 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTCA
* *
80486927 TCACATTGGCCATTCGGCCTTAACACATAAATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTCA
80486974 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
80486998 TCATATATAC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTCA
Found at i:80493689 original size:29 final size:30
Alignment explanation
Indices: 80493634--80493703 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
80493624 CATTAGGGTG
*
80493634 TTTTAGGCACTATGTGCCGATAATTACAGT
1 TTTTAGGCACTATGTACCGATAATTACAGT
* *
80493664 TTTTAGGTACTATGTACCGAT-GTTACAGT
1 TTTTAGGCACTATGTACCGATAATTACAGT
**
80493693 TTCAAGGCACT
1 TTTTAGGCACT
80493704 CTATACTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 15 0.44
30 19 0.56
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (30 bp):
TTTTAGGCACTATGTACCGATAATTACAGT
Found at i:80499385 original size:60 final size:60
Alignment explanation
Indices: 80499292--80499411 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
80499282 CTAGAACATT
80499292 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGT-AGAGCAATC
1 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGA-AGCAATC
*
80499352 CATGACGTTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
1 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
80499412 ATAGATCTCT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
60 57 0.98
61 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (60 bp):
CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
Found at i:80501734 original size:22 final size:22
Alignment explanation
Indices: 80501709--80501751 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
80501699 TGCTGTTATG
80501709 GACTTAGGTCCGAATCTGTATA
1 GACTTAGGTCCGAATCTGTATA
*
80501731 GACTTAGGTCCGAATTTGTAT
1 GACTTAGGTCCGAATCTGTAT
80501752 CTGACTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (22 bp):
GACTTAGGTCCGAATCTGTATA
Found at i:80501945 original size:17 final size:17
Alignment explanation
Indices: 80501923--80501957 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
80501913 ACTATTTTTA
80501923 TTTAGTAATAATGGTTT
1 TTTAGTAATAATGGTTT
80501940 TTTAGTAATAATGGTTT
1 TTTAGTAATAATGGTTT
80501957 T
1 T
80501958 ACTTTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTAGTAATAATGGTTT
Done.