Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 246 of 310
Found at i:81225089 original size:6 final size:6
Alignment explanation
Indices: 81225078--81225132 Score: 101
Period size: 6 Copynumber: 9.0 Consensus size: 6
81225068 AAACAAACAT
81225078 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCATGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-GA
81225127 ATCAGA
1 ATCAGA
81225133 GATTGATATA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 42 0.88
7 6 0.12
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:81231358 original size:38 final size:38
Alignment explanation
Indices: 81231307--81231382 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
81231297 GTAAATTCTT
* *
81231307 TAATTCGAGACATTTAAACATGTGAAAA-GTGGTTGAGA
1 TAATTCGAGACATTTAAACAT-TCAAAATGTAGTTGAGA
81231345 TAATTCGAGACATTTAAACATTCAAAATGTAGTTGAGA
1 TAATTCGAGACATTTAAACATTCAAAATGTAGTTGAGA
81231383 GGATATTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 5 0.14
38 30 0.86
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (38 bp):
TAATTCGAGACATTTAAACATTCAAAATGTAGTTGAGA
Found at i:81237002 original size:33 final size:30
Alignment explanation
Indices: 81236951--81237010 Score: 84
Period size: 33 Copynumber: 1.9 Consensus size: 30
81236941 GTGGTACATA
81236951 ATTGCATTAATTTAATTTTTTGTACATCTC
1 ATTGCATTAATTTAATTTTTTGTACATCTC
*
81236981 ATTGCATTTAAATTTATATTTTTTTTACAT
1 ATTGCA-TT-AATTTA-ATTTTTTGTACAT
81237011 TGAAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.23
31 2 0.08
32 6 0.23
33 12 0.46
ACGTcount: A:0.28, C:0.10, G:0.05, T:0.57
Consensus pattern (30 bp):
ATTGCATTAATTTAATTTTTTGTACATCTC
Found at i:81248954 original size:48 final size:47
Alignment explanation
Indices: 81248792--81248958 Score: 205
Period size: 46 Copynumber: 3.6 Consensus size: 47
81248782 TGAAATATGT
* * *
81248792 GCTAGTGTAAGACATGTCTGGGAAATGCATCGGCCAC-A-TTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-AGA
* * * **
81248838 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAGA
*
81248884 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-GA
*
81248932 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
81248959 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
46 73 0.72
47 2 0.02
48 27 0.26
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAGA
Found at i:81249052 original size:48 final size:45
Alignment explanation
Indices: 81248792--81249056 Score: 177
Period size: 46 Copynumber: 5.7 Consensus size: 45
81248782 TGAAATATGT
* *
81248792 GCTAGTGTAAGACATGTCTGGGAAATGCATCGGCCACATT-ATGAG-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGATGTGTA
* * * *
81248838 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGATG-TG-TA
* * * *
81248884 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGATG-TGT---A
* * *
81248932 GCTAGTGTAAGACCTGTCTGGGACATGGCGTC-AGC-TTGTTGTGT-
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGA-CATTGATGTGTA
* * * *
81248976 G-TCAGTGTAAGACTTTTCTGGGATATGGCATCGACTTTGATGTGCTA
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATCGACATTGATGTG-TA
81249023 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
81249057 GCATCTTATC
Statistics
Matches: 178, Mismatches: 24, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
43 6 0.03
44 29 0.16
45 9 0.05
46 69 0.39
47 10 0.06
48 49 0.28
49 6 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGATGTGTA
Found at i:81251124 original size:13 final size:13
Alignment explanation
Indices: 81251106--81251141 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
81251096 ATTAAGTCTG
81251106 GTAATGCCTCATA
1 GTAATGCCTCATA
81251119 GTAATGCCTCATA
1 GTAATGCCTCATA
81251132 GTAATGCCTC
1 GTAATGCCTC
81251142 GTACCCTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (13 bp):
GTAATGCCTCATA
Found at i:81252476 original size:22 final size:22
Alignment explanation
Indices: 81252451--81252532 Score: 94
Period size: 22 Copynumber: 3.7 Consensus size: 22
81252441 AGTACTGATC
* *
81252451 AGTAGGAATCGAAGTGTTGAGT
1 AGTAGGCATCGAAGTGTTGAAT
* * *
81252473 AGTAGGCACCAAAGTG-CGAAT
1 AGTAGGCATCGAAGTGTTGAAT
81252494 CAGTAGGCATCGAAGTGTTGAAT
1 -AGTAGGCATCGAAGTGTTGAAT
*
81252517 AATAGGCATCGAAGTG
1 AGTAGGCATCGAAGTG
81252533 CAAATCAATA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.06
22 42 0.86
23 4 0.08
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (22 bp):
AGTAGGCATCGAAGTGTTGAAT
Found at i:81252496 original size:44 final size:44
Alignment explanation
Indices: 81252431--81252554 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
81252421 CCCACACCAT
* * * * *
81252431 TAGGCACTAAAGTACTG-ATCAGTAGGAATCGAAGTGTTGAGTAG
1 TAGGCACCAAAGTGC-GAATCAGTAGGCATCGAAGTGTTGAATAA
81252475 TAGGCACCAAAGTGCGAATCAGTAGGCATCGAAGTGTTGAATAA
1 TAGGCACCAAAGTGCGAATCAGTAGGCATCGAAGTGTTGAATAA
* * * * *
81252519 TAGGCATCGAAGTGCAAATCAATAGGCACCGAAGTG
1 TAGGCACCAAAGTGCGAATCAGTAGGCATCGAAGTG
81252555 CTGACAGTGG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
43 1 0.01
44 68 0.99
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.21
Consensus pattern (44 bp):
TAGGCACCAAAGTGCGAATCAGTAGGCATCGAAGTGTTGAATAA
Found at i:81252542 original size:22 final size:22
Alignment explanation
Indices: 81252475--81252555 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 22
81252465 TGTTGAGTAG
* *
81252475 TAGGCACCAAAGTGCGAATCAG
1 TAGGCACCGAAGTGCGAATCAA
* *
81252497 TAGGCATCGAAGTGTTGAAT-AA
1 TAGGCACCGAAGTG-CGAATCAA
* *
81252519 TAGGCATCGAAGTGCAAATCAA
1 TAGGCACCGAAGTGCGAATCAA
81252541 TAGGCACCGAAGTGC
1 TAGGCACCGAAGTGC
81252556 TGACAGTGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.06
22 43 0.86
23 4 0.08
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.19
Consensus pattern (22 bp):
TAGGCACCGAAGTGCGAATCAA
Found at i:81257597 original size:44 final size:44
Alignment explanation
Indices: 81257549--81257705 Score: 173
Period size: 43 Copynumber: 3.6 Consensus size: 44
81257539 TGTGTTATCG
*
81257549 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACA
* * * *
81257593 TGTAAGACCACGTCTTGGACATTGACATCG-TATATGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACA
* *
81257635 TGTAAGACC-CTGTCTGGAACAG-TGGCATCTATATT-TGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTATGATTTACA
*
81257678 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
81257706 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 37 0.40
44 29 0.31
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTACA
Found at i:81257897 original size:23 final size:23
Alignment explanation
Indices: 81257871--81257916 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81257861 ATCTTACATG
81257871 AAATATATTAC-AATGAATAATAT
1 AAATATA-TACAAATGAATAATAT
* *
81257894 AAATGTATACAAATGAATGATAT
1 AAATATATACAAATGAATAATAT
81257917 GTTATATACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (23 bp):
AAATATATACAAATGAATAATAT
Found at i:81262425 original size:43 final size:43
Alignment explanation
Indices: 81262273--81262476 Score: 194
Period size: 43 Copynumber: 4.7 Consensus size: 43
81262263 CTCATTGTAA
* * * *
81262273 TGCATCATCGGATAAACTGAAAG-AAATATAATGGCACACGTAG
1 TGCATCATCGGATAAACCG-AAGCAATTATACTGGCACACATAG
** * * * * *
81262316 TGCATCATCGGATAAATTGAAGGAAATATACTAGCACACGTAA
1 TGCATCATCGGATAAACCGAAGCAATTATACTGGCACACATAG
*
81262359 TGCATCATCGGATAAACCAAAGCAATTATACTGGCACACATAG
1 TGCATCATCGGATAAACCGAAGCAATTATACTGGCACACATAG
* *** * *
81262402 TGCATCATTGGATATGTCGAAGCAATTATATTGACACACATAG
1 TGCATCATCGGATAAACCGAAGCAATTATACTGGCACACATAG
** * *
81262445 TGCATCATTAGACAAGCCGAAGCAATTATACT
1 TGCATCATCGGATAAACCGAAGCAATTATACT
81262477 AGAAAACATA
Statistics
Matches: 136, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 3 0.02
43 133 0.98
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (43 bp):
TGCATCATCGGATAAACCGAAGCAATTATACTGGCACACATAG
Found at i:81262440 original size:86 final size:86
Alignment explanation
Indices: 81262269--81262476 Score: 222
Period size: 86 Copynumber: 2.4 Consensus size: 86
81262259 ATATCTCATT
* * * *
81262269 GTAATGCATCATCGGATAAACTGAAAG-AAATATAATGGCACACGTAGTGCATCATCGGATAAAT
1 GTAATGCATCATCGGATAAAC-CAAAGCAATTATACTGGCACACATAGTGCATCATCGGATAAAT
* *
81262333 TGAAGGAAATATACTAGCACAC
65 CGAAGCAAATATACTAGCACAC
* **
81262355 GTAATGCATCATCGGATAAACCAAAGCAATTATACTGGCACACATAGTGCATCATTGGATATGTC
1 GTAATGCATCATCGGATAAACCAAAGCAATTATACTGGCACACATAGTGCATCATCGGATAAATC
* *
81262420 GAAGCAATTATA-TTGACACAC
66 GAAGCAAATATACTAG-CACAC
* * ** * * *
81262441 ATAGTGCATCATTAGACAAGCCGAAGCAATTATACT
1 GTAATGCATCATCGGATAAACCAAAGCAATTATACT
81262477 AGAAAACATA
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
85 6 0.06
86 96 0.94
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (86 bp):
GTAATGCATCATCGGATAAACCAAAGCAATTATACTGGCACACATAGTGCATCATCGGATAAATC
GAAGCAAATATACTAGCACAC
Found at i:81262486 original size:43 final size:43
Alignment explanation
Indices: 81262342--81262581 Score: 167
Period size: 43 Copynumber: 5.6 Consensus size: 43
81262332 TTGAAGGAAA
* * * * * * *
81262342 TATACTAGCACACGTAATGCATCATCGGATAAACCAAAGCAAT
1 TATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAAT
* * * * *
81262385 TATACTGGCACACATAGTGCATCATTGGATATGTCGAAGCAAT
1 TATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAAT
* *
81262428 TATA-TTGACACACATAGTGCATCATTAGACAAGCCGAAGCAAT
1 TATACTAGA-ACACATAGTGCATCATTGGACAAGCCGAAGCAAT
* * ** *
81262471 TATACTAGAAAACATAGTCCATTTTTGGACAAGCCTAAGCAAT
1 TATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAAT
* * * * * **** * *
81262514 TATAATGGTACACACATTGCATCACCAAACAAGCTGAAGTAAT
1 TATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAAT
* * *
81262557 TATACCAGTACACATAGTGTATCAT
1 TATACTAGAACACATAGTGCATCAT
81262582 CAAATAAACC
Statistics
Matches: 151, Mismatches: 44, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
42 2 0.01
43 146 0.97
44 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.25
Consensus pattern (43 bp):
TATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAAT
Found at i:81262486 original size:86 final size:86
Alignment explanation
Indices: 81262378--81262581 Score: 205
Period size: 86 Copynumber: 2.4 Consensus size: 86
81262368 GGATAAACCA
* * * * * *
81262378 AAGCAATTATACTGGCACACATAGTGCATCATTGGATATGTCGAAGCAATTAT-ATTG-ACACAC
1 AAGCAATTATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAATTATAATGGTACACAC
** *
81262441 ATAGTGCATCATTAGACAAGCCG
66 AT--TGCATCACCAAACAAGCCG
* * ** *
81262464 AAGCAATTATACTAGAAAACATAGTCCATTTTTGGACAAGCCTAAGCAATTATAATGGTACACAC
1 AAGCAATTATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAATTATAATGGTACACAC
*
81262529 ATTGCATCACCAAACAAGCTG
66 ATTGCATCACCAAACAAGCCG
* * * *
81262550 AAGTAATTATACCAGTACACATAGTGTATCAT
1 AAGCAATTATACTAGAACACATAGTGCATCAT
81262582 CAAATAAACC
Statistics
Matches: 93, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
86 82 0.88
87 3 0.03
88 8 0.09
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (86 bp):
AAGCAATTATACTAGAACACATAGTGCATCATTGGACAAGCCGAAGCAATTATAATGGTACACAC
ATTGCATCACCAAACAAGCCG
Found at i:81264399 original size:15 final size:18
Alignment explanation
Indices: 81264363--81264401 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 18
81264353 CTATGAGCCA
81264363 CCATTTACTTTCACTATT
1 CCATTTACTTTCACTATT
81264381 CCATTTAC-TT-ACT-TT
1 CCATTTACTTTCACTATT
81264396 CCATTT
1 CCATTT
81264402 CATTTACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 3 0.14
17 2 0.10
18 8 0.38
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.51
Consensus pattern (18 bp):
CCATTTACTTTCACTATT
Found at i:81266420 original size:18 final size:18
Alignment explanation
Indices: 81266373--81266411 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
81266363 TTAGTTTTGG
81266373 ATAGTCTTAATTCTGACA
1 ATAGTCTTAATTCTGACA
81266391 ATAGTCTTAATTCTGACA
1 ATAGTCTTAATTCTGACA
81266409 ATA
1 ATA
81266412 AAGCTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (18 bp):
ATAGTCTTAATTCTGACA
Found at i:81266599 original size:14 final size:16
Alignment explanation
Indices: 81266573--81266604 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
81266563 GAATAAGAAC
81266573 AAGTACAATAAT-AGA
1 AAGTACAATAATAAGA
81266588 AAGTAC-ATAATAAGA
1 AAGTACAATAATAAGA
81266603 AA
1 AA
81266605 TAATTCAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (16 bp):
AAGTACAATAATAAGA
Found at i:81267556 original size:11 final size:11
Alignment explanation
Indices: 81267540--81267615 Score: 53
Period size: 11 Copynumber: 6.4 Consensus size: 11
81267530 GATAAGTCTG
* *
81267540 TAAAATGAACA
1 TAAAATAAAAA
81267551 TAAAATAAAAA
1 TAAAATAAAAA
*
81267562 TAAAAGAAAAGA
1 TAAAATAAAA-A
*
81267574 TAAAAGAAAAGCGA
1 TAAAATAAAA---A
*
81267588 AAAAGATAAAAA
1 TAAA-ATAAAAA
81267600 TCAAAATAAAAA
1 T-AAAATAAAAA
81267612 TAAA
1 TAAA
81267616 TGGACTCAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
11 21 0.39
12 20 0.37
13 3 0.06
14 5 0.09
15 5 0.09
ACGTcount: A:0.74, C:0.04, G:0.09, T:0.13
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:81267593 original size:13 final size:12
Alignment explanation
Indices: 81267550--81267584 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
81267540 TAAAATGAAC
*
81267550 ATAAAATAAAA-
1 ATAAAAGAAAAG
81267561 ATAAAAGAAAAG
1 ATAAAAGAAAAG
81267573 ATAAAAGAAAAG
1 ATAAAAGAAAAG
81267585 CGAAAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (12 bp):
ATAAAAGAAAAG
Found at i:81269226 original size:4 final size:4
Alignment explanation
Indices: 81269217--81269246 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
81269207 AATGAAGAAT
81269217 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
81269247 ATTGACCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:81270970 original size:40 final size:40
Alignment explanation
Indices: 81270872--81271134 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
81270862 TCCTCGTTCA
* * * ** *
81270872 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
81270911 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81270951 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81270991 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
81271031 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
81271071 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
81271111 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81271135 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81279252 original size:40 final size:40
Alignment explanation
Indices: 81279154--81279496 Score: 424
Period size: 40 Copynumber: 8.6 Consensus size: 40
81279144 TCCTCGTTCA
* * * * *
81279154 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
81279193 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81279233 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81279273 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81279313 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
81279353 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
81279393 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
81279433 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
81279473 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81279497 CAGCATTCAA
Statistics
Matches: 275, Mismatches: 23, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.14
40 224 0.81
41 12 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:81279505 original size:41 final size:41
Alignment explanation
Indices: 81279428--81279505 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81279418 TTTGTATCTC
* * *
81279428 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81279469 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81279506 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81281920 original size:36 final size:36
Alignment explanation
Indices: 81281865--81281936 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
81281855 AACTTCTCAT
81281865 TCCTGCTATCAATCTTATC-AAAATAAGGTTTTAGA
1 TCCTGCTATCAATCTTATCAAAAATAAGGTTTTAGA
*
81281900 NTCCTGCTATCAGT-TGTATCAAAAATAAGGTTTTAGA
1 -TCCTGCTATCAATCT-TATCAAAAATAAGGTTTTAGA
81281937 CGAGTACTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 1 0.03
36 16 0.48
37 16 0.48
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.36
Consensus pattern (36 bp):
TCCTGCTATCAATCTTATCAAAAATAAGGTTTTAGA
Found at i:81287061 original size:48 final size:48
Alignment explanation
Indices: 81286990--81287257 Score: 303
Period size: 48 Copynumber: 5.6 Consensus size: 48
81286980 TAGGTGTGCT
81286990 AGTGTAA-AGCCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGA-CCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* * * *
81287038 AGTGTAAGACCATGTCTCGGACATGGCATCGGTCACATTATTAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* ** * * * *
81287086 AGTGTAAGACCATGTCTGGGACATGACATCGGCGTTGTT-T-TGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* * *
81287132 AGTGCAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* * * *
81287180 AGTGTAAGACCATGTCTGGGACATGGCATCAGCC-TCGA-CACGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--ATTATGAGAGCC
*
81287228 AGTGTAAGACCATGTCTGAGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
81287258 AGTAATTTAC
Statistics
Matches: 185, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
46 35 0.19
47 2 0.01
48 146 0.79
49 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
Found at i:81287170 original size:94 final size:94
Alignment explanation
Indices: 81287038--81287209 Score: 290
Period size: 94 Copynumber: 1.8 Consensus size: 94
81287028 TATGAGAGCC
* * * *
81287038 AGTGTAAGACCATGTCTCGGACATGGCATCGGTCACATTATTAGAGCCAGTGTAAGACCATGTCT
1 AGTGCAAGACCATGTCTCGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
81287103 GGGACATGACATCGGCGTTGTTTTGTGCT
66 GGGACATGACATCGGCGTTGTTTTGTGCT
*
81287132 AGTGCAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGCAAGACCATGTCTCGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
*
81287197 GGGACATGGCATC
66 GGGACATGACATC
81287210 AGCCTCGACA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 72 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (94 bp):
AGTGCAAGACCATGTCTCGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGACATCGGCGTTGTTTTGTGCT
Found at i:81287240 original size:142 final size:141
Alignment explanation
Indices: 81286984--81287257 Score: 401
Period size: 142 Copynumber: 1.9 Consensus size: 141
81286974 GAGTGATAGG
* * *
81286984 TGTGCTAGTGTAAAGCCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCAGTGTAAGACC
1 TGTGCTAGTGCAAAGCCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACC
* * *
81287049 ATGTCTCGGACATGGCATCGGTCACATTATTAGAGCCAGTGTAAGACCATGTCTGGGACATGACA
66 ATGTCTCGGACATGGCATCGCTCACA-TAGTAGAGCCAGTGTAAGACCATGTCTGAGACATGACA
81287114 TCGGCGTTGTTT
130 TCGGCGTTGTTT
81287126 TGTGCTAGTGC-AAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGAC
1 TGTGCTAGTGCAAAG-CCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGAC
* *
81287190 CATGTCTGGGACATGGCATCAGCCTCGACA-CGT-GAGCCAGTGTAAGACCATGTCTGAGACATG
65 CATGTCTCGGACATGGCATC-G-CTC-ACATAGTAGAGCCAGTGTAAGACCATGTCTGAGACATG
*
81287253 GCATC
127 ACATC
81287258 AGTAATTTAC
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
141 3 0.03
142 109 0.92
143 2 0.02
144 2 0.02
145 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (141 bp):
TGTGCTAGTGCAAAGCCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACC
ATGTCTCGGACATGGCATCGCTCACATAGTAGAGCCAGTGTAAGACCATGTCTGAGACATGACAT
CGGCGTTGTTT
Found at i:81291364 original size:21 final size:21
Alignment explanation
Indices: 81291340--81291384 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
81291330 TAATTTTCTA
*
81291340 AAACTACTTGACCTTAGGCTC
1 AAACCACTTGACCTTAGGCTC
* *
81291361 AAACCACTTGGCCTTAGGGTC
1 AAACCACTTGACCTTAGGCTC
81291382 AAA
1 AAA
81291385 TCACCTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (21 bp):
AAACCACTTGACCTTAGGCTC
Found at i:81303244 original size:25 final size:24
Alignment explanation
Indices: 81303216--81303275 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
81303206 TGTTTAATTT
81303216 TTTTTTTCTATGTTCTTACTTTCAA
1 TTTTTTT-TATGTTCTTACTTTCAA
81303241 TTTTTTTTATGTTCTTACTTTCAA
1 TTTTTTTTATGTTCTTACTTTCAA
81303265 -TTTTTTTATGT
1 TTTTTTTTATGT
81303276 GTCATAAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 11 0.31
24 17 0.49
25 7 0.20
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (24 bp):
TTTTTTTTATGTTCTTACTTTCAA
Found at i:81304549 original size:10 final size:10
Alignment explanation
Indices: 81304523--81304576 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
81304513 TATATTGCGT
81304523 TTTTTAAAATTA
1 TTTTTAAAA--A
81304535 TTTTTAAAAA
1 TTTTTAAAAA
81304545 TTTTTGAAAAA
1 TTTTT-AAAAA
*
81304556 -TTTTAAAAG
1 TTTTTAAAAA
*
81304565 TTATTAAAAA
1 TTTTTAAAAA
81304575 TT
1 TT
81304577 CATTTTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 4 0.11
10 19 0.51
11 5 0.14
12 9 0.24
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:81307881 original size:37 final size:37
Alignment explanation
Indices: 81307831--81307904 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
81307821 GTAAGGTAGG
*
81307831 GTTTGGCTAACACATACATAGGTAGGGTTTGCACTTA
1 GTTTGGCTAACACATACATAAGTAGGGTTTGCACTTA
81307868 GTTTGGCTAACACATACATAAGTAGGGTTTGCACTTA
1 GTTTGGCTAACACATACATAAGTAGGGTTTGCACTTA
81307905 CAGGGGTAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (37 bp):
GTTTGGCTAACACATACATAAGTAGGGTTTGCACTTA
Found at i:81308051 original size:23 final size:23
Alignment explanation
Indices: 81308007--81308075 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
81307997 GGTCCACATA
* * *
81308007 TAACAACATGAAGGGTTCGCATG
1 TAACAATATGTAGGGTTTGCATG
**
81308030 TTTCAATATGTAGGGTTTGCATG
1 TAACAATATGTAGGGTTTGCATG
* *
81308053 TAACGATATTTAGGGTTTGCATG
1 TAACAATATGTAGGGTTTGCATG
81308076 CAATATAGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.35
Consensus pattern (23 bp):
TAACAATATGTAGGGTTTGCATG
Found at i:81308635 original size:29 final size:29
Alignment explanation
Indices: 81308560--81308648 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
81308550 TTCATACATA
*
81308560 CTCACACATACAGGGGGTTCGCACACAGG
1 CTCACACATGCAGGGGGTTCGCACACAGG
* ** * * *
81308589 CTCGCATTTGTAAGGGGTTCGCACA-TGG
1 CTCACACATGCAGGGGGTTCGCACACAGG
* *
81308617 CTCACACATGCAGGAGGG-TCACACACGGG
1 CTCACACATGCAGG-GGGTTCGCACACAGG
81308646 CTC
1 CTC
81308649 GCAGATAGGG
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
28 17 0.39
29 27 0.61
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (29 bp):
CTCACACATGCAGGGGGTTCGCACACAGG
Found at i:81311183 original size:23 final size:23
Alignment explanation
Indices: 81311157--81311200 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
81311147 AAATAAATAA
81311157 AAATAAAACAAAATAAAAATATT
1 AAATAAAACAAAATAAAAATATT
*
81311180 AAATAAAACAAAATAATAATA
1 AAATAAAACAAAATAAAAATA
81311201 ATAATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAAAACAAAATAAAAATATT
Found at i:81311200 original size:29 final size:29
Alignment explanation
Indices: 81311138--81311206 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
81311128 AGCTAATAGT
*
81311138 AAAATAAATAA-A-TAAATAAAAATAAAAC
1 AAAATAAA-AATATTAAATAAAAACAAAAC
*
81311166 AAAATAAAAATATTAAAT-AAAACAAAAT
1 AAAATAAAAATATTAAATAAAAACAAAAC
*
81311194 AATAATAATAATA
1 AA-AATAAAAATA
81311207 ATATTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 2 0.06
28 19 0.54
29 14 0.40
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (29 bp):
AAAATAAAAATATTAAATAAAAACAAAAC
Found at i:81312683 original size:44 final size:44
Alignment explanation
Indices: 81312635--81312809 Score: 119
Period size: 44 Copynumber: 4.1 Consensus size: 44
81312625 CTCCACTACC
81312635 ACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCA
1 ACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCA
* * * * *
81312679 ACTTTAAAGAGATGAGATTTGCTATCTTCAGTCT--T---CTGCA
1 ACTTTAGAGAGATAAGACTTG-TAACTTCAATCTACTCCGCTGCA
* * * * * ** * * * ** *
81312719 ACTTCAGGGATATGAGATTTGT-GTTTTAGTCTGCTCCATTACA
1 ACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCA
* *
81312762 ACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCTGTTGCA
1 ACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCA
81312806 ACTT
1 ACTT
81312810 CAAGGAGATG
Statistics
Matches: 97, Mismatches: 27, Indels: 14
0.70 0.20 0.10
Matches are distributed among these distances:
38 7 0.07
39 1 0.01
40 23 0.24
43 21 0.22
44 35 0.36
45 10 0.10
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (44 bp):
ACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCA
Found at i:81312734 original size:40 final size:41
Alignment explanation
Indices: 81312687--81312867 Score: 138
Period size: 40 Copynumber: 4.3 Consensus size: 41
81312677 CAACTTTAAA
81312687 GAGATGAGATTTGCTATCTTCAGTCT-TC-TGCAACTTCAGG
1 GAGATGAGATTTG-TATCTTCAGTCTCTCTTGCAACTTCAGG
* * * * * *
81312727 GATATGAGATTTGTGT-TTTAGTCTGCTCCATTACAACTTTAGA
1 GAGATGAGATTTGTATCTTCAGTCT-CT-C-TTGCAACTTCAGG
* * * * *
81312770 GAGATAAGACTTGTAACTTCAATCTACTCTGTTGCAACTTCAAG
1 GAGATGAGATTTGTATCTTCAGTCT-CTC--TTGCAACTTCAGG
*
81312814 GAGATGAGATTTGCCATCTTCAGTCT-TC-TGCAACTTCAGG
1 GAGATGAGATTTG-TATCTTCAGTCTCTCTTGCAACTTCAGG
*
81312854 GATATGAGATTTGT
1 GAGATGAGATTTGT
81312868 GTTTTAGTCT
Statistics
Matches: 106, Mismatches: 27, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
38 7 0.07
39 2 0.02
40 36 0.34
41 1 0.01
43 23 0.22
44 28 0.26
45 9 0.08
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (41 bp):
GAGATGAGATTTGTATCTTCAGTCTCTCTTGCAACTTCAGG
Found at i:81312766 original size:127 final size:127
Alignment explanation
Indices: 81312622--81312938 Score: 517
Period size: 127 Copynumber: 2.5 Consensus size: 127
81312612 TAGCTTTAAA
* *
81312622 CTGCTCCACTACCACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCAACTTTAAA
1 CTGCTCCACTACAACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCAACTTCAAA
*
81312687 GAGATGAGATTTGCTATCTTCAGTCTTCTGCAACTTCAGGGATATGAGATTTGTGTTTTAGT
66 GAGATGAGATTTGCCATCTTCAGTCTTCTGCAACTTCAGGGATATGAGATTTGTGTTTTAGT
* * * *
81312749 CTGCTCCATTACAACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCTGTTGCAACTTCAAG
1 CTGCTCCACTACAACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCAACTTCAAA
81312814 GAGATGAGATTTGCCATCTTCAGTCTTCTGCAACTTCAGGGATATGAGATTTGTGTTTTAGT
66 GAGATGAGATTTGCCATCTTCAGTCTTCTGCAACTTCAGGGATATGAGATTTGTGTTTTAGT
* * ** * *
81312876 CTGCTCCACTACAACTTTAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCA
1 CTGCTCCACTACAACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCAACTTCA
81312939 GGAAGATAAG
Statistics
Matches: 174, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
127 174 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (127 bp):
CTGCTCCACTACAACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCCGCTGCAACTTCAAA
GAGATGAGATTTGCCATCTTCAGTCTTCTGCAACTTCAGGGATATGAGATTTGTGTTTTAGT
Found at i:81312892 original size:43 final size:43
Alignment explanation
Indices: 81312714--81312945 Score: 141
Period size: 44 Copynumber: 5.4 Consensus size: 43
81312704 CTTCAGTCTT
* *
81312714 CTGCAACTTCAGGGATATGAGATTTGTGTTTTAGTCTGCTCCA
1 CTGCAACTTCAGGGAGATGAGATTTGTGTTTCAGTCTGCTCCA
* * * * * * ** * * **
81312757 TTACAACTTTAGAGAGATAAGACTTGTAACTTCAATCTACTCTG
1 CTGCAACTTCAGGGAGATGAGATTTGT-GTTTCAGTCTGCTCCA
* * **
81312801 TTGCAACTTCAAGGAGATGAGATTTGCCATCTTCAGTCT--T---
1 CTGCAACTTCAGGGAGATGAGATTTG-TGT-TTCAGTCTGCTCCA
* *
81312841 CTGCAACTTCAGGGATATGAGATTTGTGTTTTAGTCTGCTCCA
1 CTGCAACTTCAGGGAGATGAGATTTGTGTTTCAGTCTGCTCCA
* * * * * * *
81312884 CTACAACTTTAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCA
1 CTGCAACTTCAGGGAGATGAGATTTGT-GTTTCAGTCTGCTCCA
*
81312928 CTGCAACTTCAGGAAGAT
1 CTGCAACTTCAGGGAGAT
81312946 AAGTCCGCCA
Statistics
Matches: 139, Mismatches: 41, Indels: 17
0.71 0.21 0.09
Matches are distributed among these distances:
38 7 0.05
39 1 0.01
40 24 0.17
43 42 0.30
44 58 0.42
45 7 0.05
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (43 bp):
CTGCAACTTCAGGGAGATGAGATTTGTGTTTCAGTCTGCTCCA
Found at i:81313080 original size:44 final size:44
Alignment explanation
Indices: 81313021--81313376 Score: 167
Period size: 44 Copynumber: 7.6 Consensus size: 44
81313011 CTTTAGTCTA
*
81313021 CTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTG
* * *
81313065 CTCCATTGCAACTTCA-GGATGATAAGATTCGCCATAATTTGTAGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGA-GATAAG----G------TTGGTGGCTTCAATCTG
* * * * * *
81313119 TTCCACTGCAA-TGTCAGGGAAATAAGATTCGCTGTCTTCAGTCTG
1 CTCCACTGCAACT-TCAGGGAGATAAGGTT-GGTGGCTTCAATCTG
* ** * *
81313164 CTCCGCTATAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTG
** * * *
81313208 CTCCACTGCAACTTCAGGAAGATAAGATTCACCATAATTTGTAGCTTCAATCTA
1 CTCCACTGCAACTTCAGG--G---AGA-T-A--A-GGTTGGTGGCTTCAATCTG
* * * * * * * *
81313262 TTCCATTACAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGTT-GGTGGCTTCAATCTG
* * * *
81313307 CTCCACTACAACTTCAGGAAGATAAGGCTGGTGGCTTCAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTG
* * *
81313351 GTCCACTGTAACTTCAGGAAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
81313377 ATCTGCCATC
Statistics
Matches: 230, Mismatches: 56, Indels: 52
0.68 0.17 0.15
Matches are distributed among these distances:
43 3 0.01
44 85 0.37
45 63 0.27
46 2 0.01
47 1 0.00
48 2 0.01
49 5 0.02
50 1 0.00
51 1 0.00
52 1 0.00
53 2 0.01
54 61 0.27
55 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTG
Found at i:81313168 original size:143 final size:143
Alignment explanation
Indices: 81312873--81313378 Score: 737
Period size: 143 Copynumber: 3.5 Consensus size: 143
81312863 TTTGTGTTTT
* *
81312873 AGTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTC
* * * *
81312938 AGGAAGATAAG-TCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGAAAATAAG
66 AGGAAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAATGTCAGGGAAATAAG
* * * *
81313002 ATCCACTATCTTT
131 ATTCGCTGTCTTC
* * * * *
81313015 AGTCTACTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCCATTGCAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTC
*
81313080 AGGATGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAATGTCAGGGAAATAAG
66 AGGAAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAATGTCAGGGAAATAAG
81313145 ATTCGCTGTCTTC
131 ATTCGCTGTCTTC
* * *
81313158 AGTCTGCTCCGCTATAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTC
* * * *
81313223 AGGAAGATAAGATTCACCATAATTTGTAGCTTCAATCTATTCCATTACAACT-TCAGGGAAATAA
66 AGGAAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAA-TGTCAGGGAAATAA
*
81313287 GATTCGTTGTCTTC
130 GATTCGCTGTCTTC
* * * *
81313301 AGTCTGCTCCACTACAACTTCAGGAAGATAAGGCTGGTGGCTTCAATTTGGTCCACTGTAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTC
81313366 AGGAAGATAAGAT
66 AGGAAGATAAGAT
81313379 CTGCCATCTT
Statistics
Matches: 327, Mismatches: 35, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
142 68 0.21
143 258 0.79
144 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (143 bp):
AGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTC
AGGAAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGCAATGTCAGGGAAATAAG
ATTCGCTGTCTTC
Found at i:81313403 original size:45 final size:44
Alignment explanation
Indices: 81313352--81313447 Score: 138
Period size: 45 Copynumber: 2.2 Consensus size: 44
81313342 TTCAATTTGG
* * * *
81313352 TCCACTGTAACTTCAGGAAGATAAGATCTGCCATCTTCGATCTAC
1 TCCACTGTAACTTCAAGAAGATAAGATCT-ACAACTTCAATCTAC
*
81313397 TCCACTGTAACTTCAAGAAGATAAGATCTACAACTTCAATTTAC
1 TCCACTGTAACTTCAAGAAGATAAGATCTACAACTTCAATCTAC
81313441 TCCACTG
1 TCCACTG
81313448 GTACTTTAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.39
45 28 0.61
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (44 bp):
TCCACTGTAACTTCAAGAAGATAAGATCTACAACTTCAATCTAC
Found at i:81319337 original size:20 final size:20
Alignment explanation
Indices: 81319312--81319359 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
81319302 TAGGAAATTA
81319312 ACACGGCCTGGAGGTAAGCC
1 ACACGGCCTGGAGGTAAGCC
81319332 ACACGGCCTGGAGGTAAGCC
1 ACACGGCCTGGAGGTAAGCC
81319352 ACACGGCC
1 ACACGGCC
81319360 ATGTCCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.33, T:0.08
Consensus pattern (20 bp):
ACACGGCCTGGAGGTAAGCC
Found at i:81320262 original size:73 final size:74
Alignment explanation
Indices: 81320134--81320275 Score: 214
Period size: 73 Copynumber: 1.9 Consensus size: 74
81320124 GGATTTTTAC
* * * * *
81320134 GGTGGATTTTTCCTTGGGTATTGTCTTAATCAATCGAATTTTCCCAAAAGCTTTTCCCCAA-TTT
1 GGTGGATTTTCCCTTAGGTATTGTCTTAATAAATAGAATTTTCCCAAAAGATTTTCCCCAATTTT
81320198 CTCTTTCTA
66 CTCTTTCTA
* *
81320207 GGTGGATTTTCCCTTAGGTATTGTCTTAATAAATAGAATTTTCCCTAAAGATTTTCCCTAATTTT
1 GGTGGATTTTCCCTTAGGTATTGTCTTAATAAATAGAATTTTCCCAAAAGATTTTCCCCAATTTT
81320272 CTCT
66 CTCT
81320276 CTGTGCACCC
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
73 54 0.89
74 7 0.11
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (74 bp):
GGTGGATTTTCCCTTAGGTATTGTCTTAATAAATAGAATTTTCCCAAAAGATTTTCCCCAATTTT
CTCTTTCTA
Found at i:81320396 original size:14 final size:14
Alignment explanation
Indices: 81320377--81320407 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81320367 TTGGTTCCTT
81320377 TGGGTTCGACAATC
1 TGGGTTCGACAATC
*
81320391 TGGGTTCGATAATC
1 TGGGTTCGACAATC
81320405 TGG
1 TGG
81320408 TCTTGCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.32, T:0.32
Consensus pattern (14 bp):
TGGGTTCGACAATC
Found at i:81329316 original size:14 final size:14
Alignment explanation
Indices: 81329297--81329325 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81329287 AAATGAATAA
81329297 ATCGTCTGATTCAG
1 ATCGTCTGATTCAG
81329311 ATCGTCTGATTCAG
1 ATCGTCTGATTCAG
81329325 A
1 A
81329326 GTCAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (14 bp):
ATCGTCTGATTCAG
Found at i:81330705 original size:3 final size:3
Alignment explanation
Indices: 81330697--81330739 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
81330687 GTAAATAAGA
81330697 AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT AA- AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT A
81330740 TAAATTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:81330799 original size:12 final size:11
Alignment explanation
Indices: 81330688--81330830 Score: 59
Period size: 12 Copynumber: 13.0 Consensus size: 11
81330678 GACAATAAGG
*
81330688 TAAATAAGAAA
1 TAAATAATAAA
81330699 T-AATAAT-AA
1 TAAATAATAAA
81330708 T-AATAAT-AA
1 TAAATAATAAA
*
81330717 T-AATAATAAT
1 TAAATAATAAA
81330727 TAAAATAATAATA
1 T-AAATAATAA-A
** *
81330740 TAAATTTTGAA
1 TAAATAATAAA
* *
81330751 TATAT-ATATA
1 TAAATAATAAA
*
81330761 TATAT-ATAATA
1 TAAATAATAA-A
* *
81330772 TATATACATAAG
1 TAAATA-ATAAA
81330784 TAAATAAATAAA
1 TAAAT-AATAAA
81330796 TAAATAATGAAA
1 TAAATAAT-AAA
81330808 TGACAATAAT-AA
1 T-A-AATAATAAA
*
81330820 TAAAAAATAAA
1 TAAATAATAAA
81330831 CAAACCAAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
9 18 0.17
10 22 0.21
11 18 0.17
12 34 0.32
13 7 0.07
14 6 0.06
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (11 bp):
TAAATAATAAA
Found at i:81330936 original size:3 final size:3
Alignment explanation
Indices: 81330916--81331038 Score: 110
Period size: 3 Copynumber: 41.7 Consensus size: 3
81330906 AAATAAAACA
* *
81330916 AAT AA- AAT AAT AAG AAT AAT AAT AAT AAT AA- AAT AAAG AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * * * *
81330960 AA- CAT AAT AAT AAT AAT AGT AAT AAT AAT AAG CAT GAT AAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
81331007 AAT -AT GAAT AAT GAT AAT AGT AAT AAT AAT AA
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AA
81331039 CAGAAATATT
Statistics
Matches: 95, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
2 7 0.07
3 84 0.88
4 4 0.04
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:81330936 original size:26 final size:26
Alignment explanation
Indices: 81330907--81330987 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
81330897 TTGAAAGTAA
81330907 AATAAAACAAATAAAATAATAAGAAT
1 AATAAAACAAATAAAATAATAAGAAT
*
81330933 AATAATAA-TAATAAAAT-A-AAGAAT
1 AATAA-AACAAATAAAATAATAAGAAT
81330957 AAT--AACATAATAATAATAAT-AGTAAT
1 AATAAAACA-AATAA-AATAATAAG-AAT
81330983 AATAA
1 AATAA
81330988 TAAGCATGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
21 2 0.05
23 5 0.11
24 12 0.27
25 4 0.09
26 19 0.43
27 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (26 bp):
AATAAAACAAATAAAATAATAAGAAT
Found at i:81330967 original size:41 final size:40
Alignment explanation
Indices: 81330904--81330987 Score: 116
Period size: 41 Copynumber: 2.1 Consensus size: 40
81330894 AAATTGAAAG
81330904 TAAAATAAAACAAATAAAATAATAAGAATAATAATAATAA
1 TAAAATAAAACAAATAAAATAATAAGAATAATAATAATAA
* * *
81330944 TAAAATAAAGA-ATAATAACATAATAATAATAATAGTAATAA
1 TAAAATAAA-ACA-AATAAAATAATAAGAATAATAATAATAA
81330985 TAA
1 TAA
81330988 TAAGCATGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
40 10 0.26
41 29 0.74
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (40 bp):
TAAAATAAAACAAATAAAATAATAAGAATAATAATAATAA
Found at i:81331038 original size:15 final size:15
Alignment explanation
Indices: 81330921--81331066 Score: 102
Period size: 15 Copynumber: 9.6 Consensus size: 15
81330911 AAACAAATAA
* *
81330921 AATAATAAGAATAAT
1 AATAATAATAATAGT
*
81330936 AATAATAATAA-AAT
1 AATAATAATAATAGT
* *
81330950 AAAGAATAATAACA-T
1 -AATAATAATAATAGT
81330965 AATAATAATAATAGT
1 AATAATAATAATAGT
*
81330980 AATAATAATAAGCATGAT
1 AATAATAATAA-TA-G-T
*
81330998 AATACTAATAATA-T
1 AATAATAATAATAGT
*
81331012 GAATAATGATAATAGT
1 -AATAATAATAATAGT
* *
81331028 AATAATAATAACAGA
1 AATAATAATAATAGT
* *
81331043 AATATTAATTAAT-TT
1 AATAATAA-TAATAGT
81331058 AATAATAAT
1 AATAATAAT
81331067 GTAGCTAAAA
Statistics
Matches: 105, Mismatches: 17, Indels: 19
0.74 0.12 0.13
Matches are distributed among these distances:
14 16 0.15
15 70 0.67
16 6 0.06
17 2 0.02
18 11 0.10
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (15 bp):
AATAATAATAATAGT
Found at i:81332207 original size:13 final size:13
Alignment explanation
Indices: 81332180--81332212 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81332170 TTAGTTAGTT
81332180 GTTTT-GGTTTGG
1 GTTTTGGGTTTGG
*
81332192 GTTTTGGGTTTTG
1 GTTTTGGGTTTGG
81332205 GTTTTGGG
1 GTTTTGGG
81332213 GTCTTGTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.00, C:0.00, G:0.42, T:0.58
Consensus pattern (13 bp):
GTTTTGGGTTTGG
Found at i:81337869 original size:30 final size:30
Alignment explanation
Indices: 81337826--81337905 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
81337816 GATTTAATCT
* *
81337826 GCTTGTGTAAGCAACTCTATTATAATGTTA
1 GCTTGTGTGAGCAACTCTATTATAATGTCA
* * * *
81337856 GTTTGTGTGAGCAACCCTGA-TGTACTGTCA
1 GCTTGTGTGAGCAACTCT-ATTATAATGTCA
81337886 GCTTGTGTGAGCAACT-TATT
1 GCTTGTGTGAGCAACTCTATT
81337906 CCCGGGTATC
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
28 1 0.03
29 2 0.05
30 36 0.90
31 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.38
Consensus pattern (30 bp):
GCTTGTGTGAGCAACTCTATTATAATGTCA
Found at i:81342162 original size:31 final size:26
Alignment explanation
Indices: 81342096--81342147 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
81342086 AATACATGAA
81342096 ATATGTATGATAACAAAATAAAAAAT
1 ATATGTATGATAACAAAATAAAAAAT
81342122 ATATGTATGATAACAAAATAAAAAAT
1 ATATGTATGATAACAAAATAAAAAAT
81342148 TGGATTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.27
Consensus pattern (26 bp):
ATATGTATGATAACAAAATAAAAAAT
Found at i:81344529 original size:109 final size:108
Alignment explanation
Indices: 81344264--81344611 Score: 411
Period size: 109 Copynumber: 3.2 Consensus size: 108
81344254 TAGCAAAAAA
* *
81344264 AAAAATAAAATTTGGTGGTGGCTTGTAGATGGCCAGCACCAAGTACTTTTTTCGTGTCCCAATGT
1 AAAAA-AAAATTTGGTGCTGGCCTGTAGATGG-CAGCACCAAGTACTTTTTTCGTGTCCCAA--T
* * * ** *
81344329 A-AATTTCTTTTGGTTTTTGCCTTCTAATGGCCAGCATCAGACTA--
62 ACAATTTTTTTTTGTTTTGGCCTTCTAATGGCTGGCACCAGACTAGT
* * * *
81344373 AAAAAAAATTTTAGTGCTAG-CTCGTAGATGGCCGACACCAAGTACTTTTTTCGTGTCCCAATAC
1 AAAAAAAAATTTGGTGCTGGCCT-GTAGATGGCAG-CACCAAGTACTTTTTTCGTGTCCCAATAC
81344437 AATTTTTTTTTGTTTTGGCCTTCTAATGGCTGGCACCAGACTAGT
64 AATTTTTTTTTGTTTTGGCCTTCTAATGGCTGGCACCAGACTAGT
* * *
81344482 AAAAAAAAATTTGGTGCTGGCCTGTAGATGGCTAGCACCAGGTACTTTTTTCGTGTTCCAATGCA
1 AAAAAAAAATTTGGTGCTGGCCTGTAGATGGC-AGCACCAAGTACTTTTTTCGTGTCCCAATAC-
*
81344547 AATTTGTTTTTTGTTCTGGCCTTCTAATGG-TCGGCACCAGACTAGT
64 AATTT-TTTTTTGTTTTGGCCTTCTAATGGCT-GGCACCAGACTAGT
*
81344593 -AAAAAAAATTTGGTACTGG
1 AAAAAAAAATTTGGTGCTGG
81344612 GCATGTATTG
Statistics
Matches: 208, Mismatches: 21, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
106 2 0.01
107 40 0.19
108 45 0.22
109 57 0.27
110 27 0.13
111 37 0.18
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (108 bp):
AAAAAAAAATTTGGTGCTGGCCTGTAGATGGCAGCACCAAGTACTTTTTTCGTGTCCCAATACAA
TTTTTTTTTGTTTTGGCCTTCTAATGGCTGGCACCAGACTAGT
Found at i:81347754 original size:39 final size:39
Alignment explanation
Indices: 81347700--81347819 Score: 195
Period size: 39 Copynumber: 3.1 Consensus size: 39
81347690 CCGGGTACCA
*
81347700 TTCCAGCACGTAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
81347739 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * * *
81347778 TTCCAACACATAGCCTGTGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
81347817 TTC
1 TTC
81347820 AAATACCATG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
Found at i:81349132 original size:21 final size:23
Alignment explanation
Indices: 81349101--81349142 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
81349091 CGGCAATTTC
81349101 AATTCATACTT-TTCAACCATGA
1 AATTCATACTTATTCAACCATGA
81349123 AATTC-TACTTATTCAACCAT
1 AATTCATACTTATTCAACCAT
81349143 CATTTAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.36, C:0.24, G:0.02, T:0.38
Consensus pattern (23 bp):
AATTCATACTTATTCAACCATGA
Found at i:81355072 original size:39 final size:39
Alignment explanation
Indices: 81355018--81355138 Score: 181
Period size: 39 Copynumber: 3.1 Consensus size: 39
81355008 CCCGGGTACC
*
81355018 ATTT-CAGCACGTAGCCTGCGGACTTCAAGTCCGGATAT
1 ATTTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATAT
81355056 ATTTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATAT
1 ATTTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATAT
* * * * *
81355095 ATTTCCAACATATAGCCTGTGGACCTCATGTCCGGATAT
1 ATTTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATAT
81355134 ATTTC
1 ATTTC
81355139 AAATACCATG
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 4 0.05
39 72 0.95
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (39 bp):
ATTTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATAT
Found at i:81356441 original size:21 final size:21
Alignment explanation
Indices: 81356416--81356456 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
81356406 CGGCAATTTC
81356416 AATTCATACTT-TTCAACCATG
1 AATTC-TACTTATTCAACCATG
81356437 AATTCTACTTATTCAACCAT
1 AATTCTACTTATTCAACCAT
81356457 CATTTAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.34, C:0.24, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTCTACTTATTCAACCATG
Found at i:81373381 original size:79 final size:82
Alignment explanation
Indices: 81373270--81373454 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
81373260 GCTACTCGTT
* * *
81373270 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
81373333 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
81373350 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
81373413 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
81373430 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81373455 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81373454 original size:40 final size:40
Alignment explanation
Indices: 81373251--81373454 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
81373241 CGGAATTTAA
** *
81373251 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
81373291 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81373331 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81373370 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
81373410 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81373450 CCGGA
1 CCGGA
81373455 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81375740 original size:5 final size:5
Alignment explanation
Indices: 81375726--81375793 Score: 55
Period size: 5 Copynumber: 12.6 Consensus size: 5
81375716 AAAATAATAT
* * *
81375726 AAATT AAATG AAATGG AAATGG GAATGG AAATA AAATG AAATG AAAATG
1 AAATG AAATG AAAT-G AAAT-G AAAT-G AAATG AAATG AAATG -AAATG
*
81375775 AAATTG GAATG AAATG AAA
1 AAA-TG AAATG AAATG AAA
81375794 AAAAAAAGTG
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 29 0.55
6 24 0.45
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.21
Consensus pattern (5 bp):
AAATG
Found at i:81375763 original size:11 final size:11
Alignment explanation
Indices: 81375726--81375794 Score: 54
Period size: 11 Copynumber: 6.3 Consensus size: 11
81375716 AAAATAATAT
*
81375726 AAATTAAATG-
1 AAATGAAATGA
*
81375736 AAATGGAAATGG
1 AAAT-GAAATGA
*
81375748 GAATGGAAAT-A
1 AAAT-GAAATGA
81375759 AAATGAAATGA
1 AAATGAAATGA
81375770 AAATGAAATTG-
1 AAATGAAA-TGA
*
81375781 GAATGAAATGA
1 AAATGAAATGA
81375792 AAA
1 AAA
81375795 AAAAAAGTGA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
10 11 0.23
11 26 0.54
12 11 0.23
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.20
Consensus pattern (11 bp):
AAATGAAATGA
Found at i:81375774 original size:22 final size:21
Alignment explanation
Indices: 81375726--81375794 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
81375716 AAAATAATAT
* *
81375726 AAATTAAATGAAATGGAAATGG
1 AAATGAAATGAAAT-GAAATGA
* *
81375748 GAATGGAAATAAAATGAAATGA
1 AAAT-GAAATGAAATGAAATGA
*
81375770 AAATGAAATTGGAATGAAATGA
1 AAATGAAA-TGAAATGAAATGA
81375792 AAA
1 AAA
81375795 AAAAAAGTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 4 0.11
22 26 0.68
23 8 0.21
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.20
Consensus pattern (21 bp):
AAATGAAATGAAATGAAATGA
Found at i:81376002 original size:16 final size:16
Alignment explanation
Indices: 81375983--81376024 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
81375973 TAACAAATTT
81375983 AAAATTTAAAT-TGACA
1 AAAATTTAAATATGA-A
*
81375999 AAAA-TAAAATATGAA
1 AAAATTTAAATATGAA
81376014 AAAATTTAAAT
1 AAAATTTAAAT
81376025 GACCCTGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (16 bp):
AAAATTTAAATATGAA
Found at i:81376136 original size:5 final size:5
Alignment explanation
Indices: 81376126--81376247 Score: 50
Period size: 5 Copynumber: 22.4 Consensus size: 5
81376116 GAAAAAAATT
* * **
81376126 AATGA AATGA AATGTTA AATGAA ATATGA ATATGA AATAA AATGTA ATTTTT
1 AATGA AATGA AATG--A AATG-A A-ATGA A-ATGA AATGA AATG-A A-ATGA
* *
81376178 AATGA ATATGA AATTA AATGA AATGTTA AATGA ATATAA AATGA AATG-
1 AATGA A-ATGA AATGA AATGA AATG--A AATGA A-ATGA AATGA AATGA
* *
81376226 -ATGA TTATGA AATGG AATGA AA
1 AATGA -AATGA AATGA AATGA AA
81376248 GTTTAAAAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
3 3 0.03
5 46 0.52
6 26 0.29
7 14 0.16
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (5 bp):
AATGA
Found at i:81376191 original size:28 final size:28
Alignment explanation
Indices: 81376151--81376226 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
81376141 TAAATGAAAT
* * *
81376151 ATGAATATGAAATAAAATGTAATTTTTA
1 ATGAATATGAAATAAAATGAAATGTTAA
*
81376179 ATGAATATGAAATTAAATGAAATGTTAA
1 ATGAATATGAAATAAAATGAAATGTTAA
* *
81376207 ATGAATATAAAATGAAATGA
1 ATGAATATGAAATAAAATGA
81376227 TGATTATGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (28 bp):
ATGAATATGAAATAAAATGAAATGTTAA
Found at i:81376325 original size:18 final size:17
Alignment explanation
Indices: 81376274--81376326 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 17
81376264 TTATAAATTT
*
81376274 AAATGAAAAGAAATATTG
1 AAATGAAAA-AAATTTTG
81376292 AAATGAAAATAAAAATTTTG
1 AAATG--AA-AAAAATTTTG
81376312 AAATGAGAAAAAATT
1 AAATGA-AAAAAATT
81376327 AAATTTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 13 0.43
19 1 0.03
20 14 0.47
21 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (17 bp):
AAATGAAAAAAATTTTG
Found at i:81378757 original size:31 final size:31
Alignment explanation
Indices: 81378722--81378788 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
81378712 TTAATTTTTA
*
81378722 TCTGTAAATTTTTACTTTATTTTTAAATTAT
1 TCTGTAAATATTTACTTTATTTTTAAATTAT
* *
81378753 TCTGTAAATATTTATTTTATTTTTTAATTAT
1 TCTGTAAATATTTACTTTATTTTTAAATTAT
81378784 TCTGT
1 TCTGT
81378789 TTTTAATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (31 bp):
TCTGTAAATATTTACTTTATTTTTAAATTAT
Found at i:81379928 original size:47 final size:48
Alignment explanation
Indices: 81379832--81379928 Score: 108
Period size: 47 Copynumber: 2.0 Consensus size: 48
81379822 ACTTGCACGA
** * *
81379832 AATTTTTTCTTTTTTTACTCTGGTGCTGGCCAATAAATGCCCTGCACC
1 AATTTTTTCTTTTACTACTCTGGTGCTGGCCAATAAATGCCCAGAACC
* * *
81379880 AATTTTTT-TTTTACTAGTCTGGTGCTGGCCATTAGAA-GGCCAGAACC
1 AATTTTTTCTTTTACTACTCTGGTGCTGGCCAATA-AATGCCCAGAACC
81379927 AA
1 AA
81379929 AAAAAAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
47 31 0.76
48 10 0.24
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (48 bp):
AATTTTTTCTTTTACTACTCTGGTGCTGGCCAATAAATGCCCAGAACC
Found at i:81380494 original size:3 final size:3
Alignment explanation
Indices: 81380488--81380532 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
81380478 AAAAAAAAAA
81380488 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
81380533 CCTTTCAGGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:81384783 original size:20 final size:20
Alignment explanation
Indices: 81384758--81384799 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
81384748 TCCAACGTCC
81384758 AACCTTTTAAATTAGATAAG
1 AACCTTTTAAATTAGATAAG
81384778 AACCTTTTAAATTAGATAAG
1 AACCTTTTAAATTAGATAAG
81384798 AA
1 AA
81384800 AAATAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
AACCTTTTAAATTAGATAAG
Found at i:81395483 original size:4 final size:4
Alignment explanation
Indices: 81395474--81395499 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
81395464 TTGAAACTAC
81395474 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
81395500 TGGAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:81400742 original size:51 final size:51
Alignment explanation
Indices: 81400682--81400808 Score: 200
Period size: 51 Copynumber: 2.5 Consensus size: 51
81400672 CACAAATCAA
* * *
81400682 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGAATATAATATAATATCTTATAAGATTACATATCATATCTAAG
* *
81400733 ATCTCTAAGAATATAATATAATATTTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAATATAATATAATATCTTATAAGATTACATATCATATCTAAG
*
81400784 ATCTCTAAGATTATAATATAATATC
1 ATCTCTAAGAATATAATATAATATC
81400809 ATATCATATC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAATATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:81400814 original size:39 final size:39
Alignment explanation
Indices: 81400769--81401081 Score: 608
Period size: 39 Copynumber: 8.0 Consensus size: 39
81400759 TATAAGATTC
81400769 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81400808 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81400847 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81400886 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81400925 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81400964 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81401003 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
* *
81401042 CATATCATATCTAAGATCTCTAAGATTATAAAATCATAT
1 CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
81401081 C
1 C
81401082 TTTTAAGATC
Statistics
Matches: 272, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 272 1.00
ACGTcount: A:0.43, C:0.13, G:0.05, T:0.38
Consensus pattern (39 bp):
CATATCATATCTAAGATCTCTAAGATTATAATATAATAT
Found at i:81402163 original size:96 final size:96
Alignment explanation
Indices: 81401997--81402190 Score: 248
Period size: 96 Copynumber: 2.0 Consensus size: 96
81401987 TCGCTTCTTT
*
81401997 TTGCTCCTTTTAGACCTCTTGGCTTCAACTTTACCCTTGCTCGAACCAAGCTTCTTAGGCTCCTT
1 TTGCTCCTTTTAGACCTCTTGGCTTCAACTTTACCCTTGCTCGAACCAAGCTTCCTAGGCTCCTT
* * * *
81402062 GTCTGCTCCATCGTTCCCTTCAATGACAGAC
66 ATCTGCTCCATCATTCCCATCAATAACAGAC
* ** * *
81402093 TTGCTCCTCTTT-GCCCTCTTGGCTTCGGCTTTTCTCTTGCTCGAACCAAGCTTCCTAGGCT-CT
1 TTGCTCCT-TTTAGACCTCTTGGCTTCAACTTTACCCTTGCTCGAACCAAGCTTCCTAGGCTCCT
* *
81402156 GTATCTGCTCGATCATTCCCATCGATAACAGAC
65 -TATCTGCTCCATCATTCCCATCAATAACAGAC
81402189 TT
1 TT
81402191 CCTTGGACAC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
95 2 0.02
96 79 0.94
97 3 0.04
ACGTcount: A:0.15, C:0.33, G:0.15, T:0.36
Consensus pattern (96 bp):
TTGCTCCTTTTAGACCTCTTGGCTTCAACTTTACCCTTGCTCGAACCAAGCTTCCTAGGCTCCTT
ATCTGCTCCATCATTCCCATCAATAACAGAC
Found at i:81402615 original size:46 final size:46
Alignment explanation
Indices: 81402548--81402637 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
81402538 GCTTATCTAC
*
81402548 CCCTAGACCAAGCTTAACCACGGATACCGCTACCTTCATGGCTTTT
1 CCCTAGACCAAACTTAACCACGGATACCGCTACCTTCATGGCTTTT
81402594 CCCTAGACCAAACTTAACCACGGATACCGCTACCTTCATGGCTT
1 CCCTAGACCAAACTTAACCACGGATACCGCTACCTTCATGGCTT
81402638 CCGACAACTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.26, C:0.36, G:0.14, T:0.24
Consensus pattern (46 bp):
CCCTAGACCAAACTTAACCACGGATACCGCTACCTTCATGGCTTTT
Found at i:81403876 original size:51 final size:51
Alignment explanation
Indices: 81403816--81404206 Score: 701
Period size: 51 Copynumber: 7.7 Consensus size: 51
81403806 TACAAATCAA
* * * * *
81403816 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
*
81403867 ATCTCTAAGAATATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
81403918 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
81403969 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
81404020 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
81404071 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
81404122 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
* * *
81404173 ATCTCTAAGATTATAAAATCATATCTTTTAAGAT
1 ATCTCTAAGATTATAATATAATATCTTATAAGAT
81404207 CATGTTTCCA
Statistics
Matches: 332, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 332 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
Found at i:81414014 original size:30 final size:30
Alignment explanation
Indices: 81413955--81414014 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
81413945 ATGACACCGT
**
81413955 ATGAAGCTTTGTATAGTCGAAAATGTCAAA
1 ATGAAGCTTTGTATAGTCGAAAACATCAAA
* *
81413985 ATGAAGCTTTGTATGGTCGACAACATCAAA
1 ATGAAGCTTTGTATAGTCGAAAACATCAAA
81414015 CTCCATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (30 bp):
ATGAAGCTTTGTATAGTCGAAAACATCAAA
Found at i:81417495 original size:19 final size:19
Alignment explanation
Indices: 81417471--81417509 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
81417461 AGGATACAAA
*
81417471 TGACATGTCATTAGGTATT
1 TGACATGTCATTAGGGATT
*
81417490 TGACATGTTATTAGGGATT
1 TGACATGTCATTAGGGATT
81417509 T
1 T
81417510 CATGTTTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.44
Consensus pattern (19 bp):
TGACATGTCATTAGGGATT
Found at i:81420261 original size:40 final size:39
Alignment explanation
Indices: 81420065--81420247 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 39
81420055 GAATGATGTC
* * * *
81420065 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
* *
81420104 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
81420144 CTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
81420183 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
81420224 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
81420248 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:81420269 original size:79 final size:79
Alignment explanation
Indices: 81420116--81420280 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
81420106 GGACTAAGAT
* **
81420116 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
81420181 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
81420195 CCGAAGGCATTTGTGCGAGTTACTATAATC-GGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCTGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
81420258 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
81420274 CCGAAGG
1 CCGAAGG
81420281 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 48 0.64
80 27 0.36
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:81422811 original size:30 final size:30
Alignment explanation
Indices: 81422754--81422811 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
81422744 TTTTCGAGCC
* **
81422754 TAGGGGCAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATAGTCATTTTACCAAAGTT
**
81422784 TAGGGGCAAAATAGTTGTTTTACCAAAG
1 TAGGGGCAAAATAGTCATTTTACCAAAG
81422812 ATATGAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATAGTCATTTTACCAAAGTT
Found at i:81423322 original size:46 final size:47
Alignment explanation
Indices: 81423202--81423373 Score: 149
Period size: 50 Copynumber: 3.6 Consensus size: 47
81423192 TGAGAGCCAA
*
81423202 TGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-ATTGAGACGAGTGCTAG
*
81423250 TGTAAGA-CATGTCTGGGACAT-GCATCGG-TT-ACG-TGATGTG-TCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGATTGA-GACGA-GTGCT-AG
** * * ** *
81423294 TGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGCTAAAGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-ATTGAGA--CGAGTGCTAG
*
81423344 TGTAAGACCATGTCTAGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
81423374 CACCTGACCC
Statistics
Matches: 101, Mismatches: 11, Indels: 22
0.75 0.08 0.16
Matches are distributed among these distances:
43 4 0.04
44 15 0.15
45 14 0.14
46 14 0.14
47 13 0.13
48 7 0.07
49 1 0.01
50 31 0.31
51 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGATTGAGACGAGTGCTAG
Found at i:81423347 original size:94 final size:93
Alignment explanation
Indices: 81423151--81423374 Score: 252
Period size: 94 Copynumber: 2.4 Consensus size: 93
81423141 ACTTGTGTGG
*
81423151 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGAT-AGAGCCAATGTAAGACCATGTA
** **
81423216 TGGGACATGGCATCGGCATTGAGACGAGT
65 TGGGACATGGCATCGGCACAGAGACGAAA
* ** * * * * *
81423245 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTTACGTGAT-GTGTCAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATAGAGCCAATGTAAGACCATGTAT
* *
81423309 GGGACATGGCATCGGCACAGATATGCTAAA
66 GGGACATGGCATCGGCACAGAGA--CGAAA
*
81423339 GCTTGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
81423375 ACCTGACCCC
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
92 38 0.35
94 50 0.46
95 13 0.12
96 7 0.06
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATAGAGCCAATGTAAGACCATGTAT
GGGACATGGCATCGGCACAGAGACGAAA
Found at i:81424387 original size:20 final size:21
Alignment explanation
Indices: 81424348--81424387 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81424338 GTTGAAATGG
81424348 CTACACGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
* *
81424369 CTACATGGGCTTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
81424388 ATTTCAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.33, G:0.28, T:0.30
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:81430165 original size:30 final size:30
Alignment explanation
Indices: 81430107--81430165 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
81430097 ATTTTTGAGC
* **
81430107 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
*
81430137 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
81430166 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:81430287 original size:9 final size:9
Alignment explanation
Indices: 81430273--81430300 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
81430263 AAAGCCAAGC
81430273 AAATCGACT
1 AAATCGACT
81430282 AAATCGACT
1 AAATCGACT
81430291 AAATCGACT
1 AAATCGACT
81430300 A
1 A
81430301 GTCGCCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.21
Consensus pattern (9 bp):
AAATCGACT
Found at i:81440521 original size:49 final size:49
Alignment explanation
Indices: 81440452--81440714 Score: 190
Period size: 47 Copynumber: 5.5 Consensus size: 49
81440442 TTGTCGCTGC
*
81440452 CATGTCCCAGACATGGTCTTACGCTGGCTATC-TCCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCCATCGAGGCCGATG
* * * ** * *
81440500 CCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACG-TGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTATCATCCAT-CGAGGCCGATG
* * * *
81440550 CATGTCCCAAACA-CGTCTTACACTGGCTAACAT-CATCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTATCATCCATCGAGGCCGATG
* * * **
81440597 TATGTCCTAGACAT-GTCTTACACTGGC-ACTCA-CC-TCTACACCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTA-TCATCCATCGAGGCCGATG
* * * *
81440643 TCATGTCCCAGACGTGGTCTTACACGGGCTATCAT-GATGCGA--CTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTATCATCCAT-CGAGGCCGATG
* *
81440691 CATGTCCCAAACA-CGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
81440715 AGCCCTCGTT
Statistics
Matches: 166, Mismatches: 36, Indels: 27
0.72 0.16 0.12
Matches are distributed among these distances:
46 20 0.12
47 55 0.33
48 35 0.21
49 43 0.26
50 11 0.07
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (49 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATCATCCATCGAGGCCGATG
Found at i:81443415 original size:47 final size:47
Alignment explanation
Indices: 81443283--81443501 Score: 204
Period size: 47 Copynumber: 4.7 Consensus size: 47
81443273 TACTTGTGTG
81443283 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATT-ATGA-GA--
1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-G-C-CATTGA-GACGAGT
* * * *
81443329 GCCAGTGTAAGACCATGTCTAGGACTTGGCATCGGCATTGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGCCATTGAGACGAGT
* *
81443377 GCTAGTGTAAGACATGTTTGGGACATGGCATTGCCATTGAGACGAGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGCCATTGAGACGAGT
* * *
81443424 GCTAGTGTAAGACATGTCTGGGACAT-ACATCAGCC-TCGAGACGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-GCCATTGAGACG-AGT
* * *
81443470 GCCAGTGTAAGACATGTCTAGGAGAT-GCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCG
81443502 GTAGAGATAT
Statistics
Matches: 146, Mismatches: 19, Indels: 17
0.80 0.10 0.09
Matches are distributed among these distances:
45 7 0.05
46 51 0.35
47 72 0.49
48 16 0.11
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGCCATTGAGACGAGT
Found at i:81447299 original size:19 final size:18
Alignment explanation
Indices: 81447271--81447314 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
81447261 TCTCTATATA
* *
81447271 TTGTTGTGCAGTTATGGTG
1 TTGTTGTGCA-TAATAGTG
*
81447290 TTGTTTTGCATAATAGTG
1 TTGTTGTGCATAATAGTG
81447308 TTGTTGT
1 TTGTTGT
81447315 TTCTTGTAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.14, C:0.05, G:0.30, T:0.52
Consensus pattern (18 bp):
TTGTTGTGCATAATAGTG
Found at i:81447531 original size:12 final size:12
Alignment explanation
Indices: 81447514--81447539 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81447504 TTATTATTGG
81447514 TCATAGTCATGC
1 TCATAGTCATGC
81447526 TCATAGTCATGC
1 TCATAGTCATGC
81447538 TC
1 TC
81447540 TTCATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (12 bp):
TCATAGTCATGC
Found at i:81449149 original size:11 final size:11
Alignment explanation
Indices: 81449133--81449159 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81449123 GATATGGAAA
81449133 AATTATTAAAT
1 AATTATTAAAT
81449144 AATTATTAAAT
1 AATTATTAAAT
81449155 AATTA
1 AATTA
81449160 AAAACGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTATTAAAT
Found at i:81456362 original size:27 final size:27
Alignment explanation
Indices: 81456330--81456511 Score: 143
Period size: 27 Copynumber: 6.7 Consensus size: 27
81456320 AAAGAAAGGC
* *
81456330 CTTTGTGGTGTAATATGAAAAGAACGT
1 CTTTGTGGCGCAATATGAAAAGAACGT
* * * *
81456357 CTTTGTGGCGCAATACGAAAGGAAAGC
1 CTTTGTGGCGCAATATGAAAAGAACGT
* * * *
81456384 CTTTATGGCGTAATATGAAAATAATGT
1 CTTTGTGGCGCAATATGAAAAGAACGT
* * * * *
81456411 TTTTGTGGCGTAATATGAAAGGAAAGC
1 CTTTGTGGCGCAATATGAAAAGAACGT
* *
81456438 CTTTGTGGCGCAATATGATAGGAAC-T
1 CTTTGTGGCGCAATATGAAAAGAACGT
* *
81456464 CCTTTGTGGCACAATATGAAAAGAAC-A
1 -CTTTGTGGCGCAATATGAAAAGAACGT
* *
81456491 CATTTTTGGCACAATATGAAA
1 C-TTTGTGGCGCAATATGAAA
81456512 TATGATAAGT
Statistics
Matches: 124, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.99
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTTGTGGCGCAATATGAAAAGAACGT
Found at i:81456397 original size:54 final size:54
Alignment explanation
Indices: 81456323--81456484 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 54
81456313 GAACCCTAAA
* *
81456323 GAAAGGCCTTTGTGGTGTAATATGAAAAGAACGTCTTTGTGGCGCAATACGAAAG
1 GAAA-GCCTTTGTGGCGTAATATGAAAAGAACGTCTTTGTGGCGCAATATGAAAG
* * * * *
81456378 GAAAGCCTTTATGGCGTAATATGAAAATAATGTTTTTGTGGCGTAATATGAAAG
1 GAAAGCCTTTGTGGCGTAATATGAAAAGAACGTCTTTGTGGCGCAATATGAAAG
* * * *
81456432 GAAAGCCTTTGTGGCGCAATATGATAGGAAC-TCCTTTGTGGCACAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAAAGAACGT-CTTTGTGGCGCAATATGAAA
81456485 AGAACACATT
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 85 0.94
55 4 0.04
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (54 bp):
GAAAGCCTTTGTGGCGTAATATGAAAAGAACGTCTTTGTGGCGCAATATGAAAG
Found at i:81456468 original size:81 final size:81
Alignment explanation
Indices: 81456331--81456485 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
81456321 AAGAAAGGCC
* * * **
81456331 TTTGTGGTGTAATATGAAAAGAACGTCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCGTA
1 TTTGTGGCGTAATATGAAAAGAAAGCCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCACA
81456396 ATATGAAAATAATGTT
66 ATATGAAAATAATGTT
* * * ** *
81456412 TTTGTGGCGTAATATGAAAGGAAAGCCTTTGTGGCGCAATATGATAGGAACTCCTTTGTGGCACA
1 TTTGTGGCGTAATATGAAAAGAAAGCCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCACA
81456477 ATATGAAAA
66 ATATGAAAA
81456486 GAACACATTT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.30
Consensus pattern (81 bp):
TTTGTGGCGTAATATGAAAAGAAAGCCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCACA
ATATGAAAATAATGTT
Found at i:81456507 original size:81 final size:81
Alignment explanation
Indices: 81456341--81456511 Score: 182
Period size: 81 Copynumber: 2.1 Consensus size: 81
81456331 TTTGTGGTGT
* * ** *
81456341 AATATGAAAAGAACGTCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCGTAATATGAAAAT
1 AATATGAAAAGAAAGCCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCACAATATGAAAAG
*** **
81456406 AATGTTTTTGTGGCGT
66 AAACATTTTGTGGCAC
* * * ** *
81456422 AATATGAAAGGAAAGCCTTTGTGGCGCAATATGATAGGAACTCCTTTGTGGCACAATATGAAAAG
1 AATATGAAAAGAAAGCCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCACAATATGAAAAG
81456487 AACACATTTT-TGGCAC
66 AA-ACATTTTGTGGCAC
81456503 AATATGAAA
1 AATATGAAA
81456512 TATGATAAGT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
81 69 0.95
82 4 0.05
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (81 bp):
AATATGAAAAGAAAGCCTTTGTGGCGCAATACGAAAGGAAAGCCTTTATGGCACAATATGAAAAG
AAACATTTTGTGGCAC
Found at i:81456984 original size:54 final size:52
Alignment explanation
Indices: 81456925--81457089 Score: 168
Period size: 54 Copynumber: 3.1 Consensus size: 52
81456915 GGTGAACCCT
**
81456925 AAAAGAAAACCTTTGTGGCACAATATGAAAGGAACACCATTGTGGAAAAATATG
1 AAAAGAAAACCTTTGTGGCACAATATGAAAGGAATGCC-TT-TGGAAAAATATG
* * * * *
81456979 AAAAGAACACTTTTGTGGCATAATATGAAATGAATGCCTTTGCATTAAAATATG
1 AAAAGAAAACCTTTGTGGCACAATATGAAAGGAATGCCTTTGGA--AAAATATG
** * * *
81457033 AAAAGAATCCCTTTGTAGCACAATGTAAAAGGAATGCCTTTATGGAAAAATATG
1 AAAAGAAAACCTTTGTGGCACAATATGAAAGGAATGCC-TT-TGGAAAAATATG
81457087 AAA
1 AAA
81457090 GAGTATCATT
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
52 3 0.03
53 2 0.02
54 81 0.89
55 2 0.02
56 3 0.03
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.25
Consensus pattern (52 bp):
AAAAGAAAACCTTTGTGGCACAATATGAAAGGAATGCCTTTGGAAAAATATG
Found at i:81457020 original size:27 final size:27
Alignment explanation
Indices: 81456925--81457089 Score: 116
Period size: 27 Copynumber: 6.1 Consensus size: 27
81456915 GGTGAACCCT
* *
81456925 AAAAGAAAACCTTTGTGGCACAATATG
1 AAAAGAATACCTTTGTGGCAAAATATG
* * * *
81456952 AAAGGAACACCATTGTGGAAAAATATG
1 AAAAGAATACCTTTGTGGCAAAATATG
* * *
81456979 AAAAGAACACTTTTGTGGCATAATATG
1 AAAAGAATACCTTTGTGGCAAAATATG
* * ****
81457006 AAATGAATGCCTTTGCATTAAAATATG
1 AAAAGAATACCTTTGTGGCAAAATATG
* * * *
81457033 AAAAGAATCCCTTTGTAGCACAATGT-
1 AAAAGAATACCTTTGTGGCAAAATATG
* * *
81457059 AAAAGGAATGCCTTTATGGAAAAATATG
1 AAAA-GAATACCTTTGTGGCAAAATATG
81457087 AAA
1 AAA
81457090 GAGTATCATT
Statistics
Matches: 104, Mismatches: 32, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
26 4 0.04
27 97 0.93
28 3 0.03
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.25
Consensus pattern (27 bp):
AAAAGAATACCTTTGTGGCAAAATATG
Found at i:81462104 original size:14 final size:14
Alignment explanation
Indices: 81462085--81462111 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81462075 AAATAAGGCG
81462085 CAGCTTAAGATACA
1 CAGCTTAAGATACA
81462099 CAGCTTAAGATAC
1 CAGCTTAAGATAC
81462112 TCAACCCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (14 bp):
CAGCTTAAGATACA
Found at i:81472169 original size:27 final size:27
Alignment explanation
Indices: 81472137--81472314 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81472127 TAAATTGTAC
81472137 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81472164 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81472190 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81472218 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81472246 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81472273 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81472300 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81472315 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81472251 original size:82 final size:81
Alignment explanation
Indices: 81472138--81472293 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81472128 AAATTGTACA
* *
81472138 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81472202 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81472219 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81472284 TGCGAGTTGA
65 TGCGAATTGA
81472294 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81472305 original size:82 final size:81
Alignment explanation
Indices: 81472134--81472314 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81472124 TGTTAAATTG
* *
81472134 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81472199 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81472215 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81472279 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81472297 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81472315 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81478984 original size:35 final size:35
Alignment explanation
Indices: 81478938--81479009 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
81478928 TTTGTTGTTC
81478938 AACATGGCCGAATAGAAGAAACAAAGGAGGGGAAG
1 AACATGGCCGAATAGAAGAAACAAAGGAGGGGAAG
81478973 AACATGGCCGAATAGAAGAAACAAAGGAGGGGAAG
1 AACATGGCCGAATAGAAGAAACAAAGGAGGGGAAG
81479008 AA
1 AA
81479010 TTTTTGGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.50, C:0.11, G:0.33, T:0.06
Consensus pattern (35 bp):
AACATGGCCGAATAGAAGAAACAAAGGAGGGGAAG
Found at i:81479459 original size:13 final size:13
Alignment explanation
Indices: 81479441--81479465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81479431 TAATGGTATA
81479441 TTGAATCCATGAC
1 TTGAATCCATGAC
81479454 TTGAATCCATGA
1 TTGAATCCATGA
81479466 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:81481136 original size:47 final size:47
Alignment explanation
Indices: 81481055--81481448 Score: 565
Period size: 47 Copynumber: 8.4 Consensus size: 47
81481045 AATGTGAAAG
*
81481055 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
81481103 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
81481150 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
81481197 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
81481244 TGTATATGTGTGATAAGACCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
81481291 TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
81481338 GGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * * *
81481385 TGTGTATGTGAGATAAGGCCTAATGACCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
81481431 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
81481449 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 31, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 301 0.96
48 12 0.04
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:81481623 original size:37 final size:37
Alignment explanation
Indices: 81481567--81481646 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
81481557 CCGGGCTCTA
* * * *
81481567 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAG-ATTATGTCCAGGT
*
81481604 AAGACTCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCAGGT
81481641 AAGACT
1 AAGACT
81481647 TCGTAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:81485049 original size:27 final size:27
Alignment explanation
Indices: 81485018--81485195 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
81485008 TAAATTGTAC
81485018 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81485045 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
81485071 ATGCACTAAGTGTGTGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81485099 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81485127 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81485154 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81485181 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81485196 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81485186 original size:82 final size:81
Alignment explanation
Indices: 81485015--81485195 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
81485005 GATTAAATTG
* *
81485015 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
81485080 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81485096 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81485160 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81485178 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81485196 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81487881 original size:12 final size:12
Alignment explanation
Indices: 81487866--81487900 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
81487856 TCTTGATGGA
81487866 AATCTGCTTCAG
1 AATCTGCTTCAG
*
81487878 AATCTACTTCAG
1 AATCTGCTTCAG
*
81487890 AATTTGCTTCA
1 AATCTGCTTCA
81487901 ATGGTGTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (12 bp):
AATCTGCTTCAG
Found at i:81488377 original size:27 final size:26
Alignment explanation
Indices: 81488347--81488418 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
81488337 ATTAATATAC
*
81488347 TATTATATTAATTAATATTAATTTTAT
1 TATTATATTAA-TAATATTAATTTTAA
*
81488374 TATTATATGATAATAATAAT-ATTTTAA
1 TATTATAT--TAATAATATTAATTTTAA
*
81488401 TATTA-ATTTATAATATTA
1 TATTATATTAATAATATTA
81488419 TTAATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 8 0.21
26 2 0.05
27 19 0.50
28 6 0.16
29 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (26 bp):
TATTATATTAATAATATTAATTTTAA
Found at i:81488433 original size:38 final size:40
Alignment explanation
Indices: 81488357--81488450 Score: 115
Period size: 39 Copynumber: 2.4 Consensus size: 40
81488347 TATTATATTA
* *
81488357 ATTAATATTAATTT-TATTATTATATGATAATAATAATAT
1 ATTAATATTAATTTATAATATTATATAATAATAATAATAT
*
81488396 TTTAATATTAATTTATAATATTAT-TAATAATAA-AATAT
1 ATTAATATTAATTTATAATATTATATAATAATAATAATAT
*
81488434 ATT-CTCATTAATTTATA
1 ATTAAT-ATTAATTTATA
81488451 TAATTTTCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
37 1 0.02
38 18 0.38
39 21 0.44
40 8 0.17
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (40 bp):
ATTAATATTAATTTATAATATTATATAATAATAATAATAT
Found at i:81489972 original size:21 final size:21
Alignment explanation
Indices: 81489927--81489966 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81489917 GGGCAACATC
81489927 TTGTTAGAGAGTTGAGGCATA
1 TTGTTAGAGAGTTGAGGCATA
*
81489948 TTGTT-GAGGAGTTGGGGCA
1 TTGTTAGA-GAGTTGAGGCA
81489967 GTTTGTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.23, C:0.05, G:0.40, T:0.33
Consensus pattern (21 bp):
TTGTTAGAGAGTTGAGGCATA
Found at i:81490125 original size:13 final size:13
Alignment explanation
Indices: 81490104--81490137 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81490094 GGAACAATTG
*
81490104 AAATCCATCAAAA
1 AAATTCATCAAAA
*
81490117 AAATTCATCAAAC
1 AAATTCATCAAAA
81490130 AAATTCAT
1 AAATTCAT
81490138 AACTTAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATTCATCAAAA
Found at i:81504233 original size:46 final size:46
Alignment explanation
Indices: 81504166--81504258 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
81504156 AGGGAAAAAT
81504166 TGGAATATGGCAAAATTTACTTAACAAAGCTAGGACTAAAGTGGAA
1 TGGAATATGGCAAAATTTACTTAACAAAGCTAGGACTAAAGTGGAA
81504212 TGGAATATGGCAAAATTTACTTAACAAAGCTAGGACTAAAGTGGAA
1 TGGAATATGGCAAAATTTACTTAACAAAGCTAGGACTAAAGTGGAA
81504258 T
1 T
81504259 TATCTAGATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.25
Consensus pattern (46 bp):
TGGAATATGGCAAAATTTACTTAACAAAGCTAGGACTAAAGTGGAA
Found at i:81506070 original size:15 final size:15
Alignment explanation
Indices: 81506057--81506111 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 15
81506047 TTATCCTATT
*
81506057 AGACACATCACTATC
1 AGACACATCACTAAC
* *
81506072 AGATACATCATTAAC
1 AGACACATCACTAAC
*
81506087 AGACCCATCACTAAC
1 AGACACATCACTAAC
81506102 AGACACATCA
1 AGACACATCA
81506112 AACTTAGGCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.44, C:0.31, G:0.07, T:0.18
Consensus pattern (15 bp):
AGACACATCACTAAC
Found at i:81507326 original size:43 final size:43
Alignment explanation
Indices: 81507136--81507356 Score: 226
Period size: 43 Copynumber: 5.1 Consensus size: 43
81507126 TGGCGTTTTT
* ** * *
81507136 TAGAACATGACCTTTAGCGGCGTTTTTCACACAAACGCTGCTA
1 TAGAACATGACATTTAGCGGCACTTTTCCCACAAACGCCGCTA
* * *
81507179 TAGAACATGACCTTTAGCAGCACTTTTCCTACAAACGCCGCTA
1 TAGAACATGACATTTAGCGGCACTTTTCCCACAAACGCCGCTA
* * * * * ** *
81507222 TAGAATATGACTTTTAGCAGCACCTTTCCCATAAACTTCACTA
1 TAGAACATGACATTTAGCGGCACTTTTCCCACAAACGCCGCTA
* *
81507265 TAGAACGTGACATTTAGCGGCATTTTTCCCACAAACGCCGCTA
1 TAGAACATGACATTTAGCGGCACTTTTCCCACAAACGCCGCTA
** * * * *
81507308 TAGAACATGACATTTAGCGGTGCCTTTACTACAAATGCCGCTA
1 TAGAACATGACATTTAGCGGCACTTTTCCCACAAACGCCGCTA
81507351 TAGAAC
1 TAGAAC
81507357 GTGAGCTTTA
Statistics
Matches: 146, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
TAGAACATGACATTTAGCGGCACTTTTCCCACAAACGCCGCTA
Found at i:81507387 original size:86 final size:84
Alignment explanation
Indices: 81507136--81507393 Score: 239
Period size: 86 Copynumber: 3.0 Consensus size: 84
81507126 TGGCGTTTTT
* ** * * *
81507136 TAGAACATGACCTTTAGCGGCGTTTTTCACACAAACGCTGCTATAGAACATGACCTTTAGCAGCA
1 TAGAACATGACATTTAGCGGCGCCTTT-ACACAAATGCCGCTATAGAACGTGA-CTTTAGCAGCA
81507201 CTTTTCCTACAAACGCCGCTA
64 CTTTTCCTACAAACGCCGCTA
* * * * * * * * *
81507222 TAGAATATGACTTTTAGCAGCACCTTTCCCATAAACT-TCACTATAGAACGTGACATTTAGCGGC
1 TAGAACATGACATTTAGCGGCGCCTTT-ACACAAA-TGCCGCTATAGAACGTGAC-TTTAGCAGC
* *
81507286 ATTTTTCCCACAAACGCCGCTA
63 ACTTTTCCTACAAACGCCGCTA
* * *
81507308 TAGAACATGACATTTAGCGGTGCCTTTACTACAAATGCCGCTATAGAACGTGAGCTTTAGCTGCG
1 TAGAACATGACATTTAGCGGCGCCTTTAC-ACAAATGCCGCTATAGAACGTGA-CTTTAGCAGCA
** *
81507373 CTTTTGTTAAAAACGCCGCTA
64 CTTTTCCTACAAACGCCGCTA
81507394 AATGTCATGT
Statistics
Matches: 135, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
85 3 0.02
86 131 0.97
87 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (84 bp):
TAGAACATGACATTTAGCGGCGCCTTTACACAAATGCCGCTATAGAACGTGACTTTAGCAGCACT
TTTCCTACAAACGCCGCTA
Done.