Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 248 of 310
Found at i:81843183 original size:13 final size:14
Alignment explanation
Indices: 81843158--81843186 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81843148 TGATGAATTG
81843158 AATTAAACAATTAT
1 AATTAAACAATTAT
81843172 AATTAAAC-ATTAT
1 AATTAAACAATTAT
81843185 AA
1 AA
81843187 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:81848404 original size:9 final size:9
Alignment explanation
Indices: 81848390--81848615 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
81848380 TATTTAAGTA
81848390 TTATGTAAG
1 TTATGTAAG
*
81848399 TTATGTAAT
1 TTATGTAAG
*
81848408 TTATGATATG
1 TTATG-TAAG
* * *
81848418 ATATAT-AT
1 TTATGTAAG
*
81848426 TTATGTAAA
1 TTATGTAAG
* *
81848435 TTATAT-AT
1 TTATGTAAG
*
81848443 TTATCTAAG
1 TTATGTAAG
*
81848452 TTATATAAG
1 TTATGTAAG
81848461 TTATGTAAG
1 TTATGTAAG
*
81848470 TTATGTAAA
1 TTATGTAAG
*
81848479 TTATGATATAAAA
1 TTATG---T-AAG
*
81848492 TATATTTAAG
1 T-TATGTAAG
81848502 TATTATGTAAG
1 --TTATGTAAG
81848513 TTATGTAAG
1 TTATGTAAG
* *
81848522 TTATAT-AT
1 TTATGTAAG
*
81848530 TTATCTAAG
1 TTATGTAAG
*
81848539 TTATATAAG
1 TTATGTAAG
*
81848548 TTATATAAG
1 TTATGTAAG
*
81848557 TTATGTATG
1 TTATGTAAG
*
81848566 TTATATAAG
1 TTATGTAAG
81848575 TTATGTAAG
1 TTATGTAAG
* *
81848584 TTATATATG
1 TTATGTAAG
*
81848593 TTATATAAG
1 TTATGTAAG
*
81848602 TTATGTAAA
1 TTATGTAAG
81848611 TTATG
1 TTATG
81848616 ATATCAAATA
Statistics
Matches: 171, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
8 16 0.09
9 131 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:81848469 original size:18 final size:18
Alignment explanation
Indices: 81848390--81848615 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
81848380 TATTTAAGTA
* *
81848390 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
81848408 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
81848426 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
81848443 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
81848461 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
81848479 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
81848502 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
81848522 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
81848539 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
81848557 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
81848575 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
81848593 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
81848611 TTATG
1 TTATG
81848616 ATATCAAATA
Statistics
Matches: 167, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 37 0.22
18 97 0.58
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:81848482 original size:27 final size:27
Alignment explanation
Indices: 81848443--81848615 Score: 159
Period size: 27 Copynumber: 6.2 Consensus size: 27
81848433 AATTATATAT
*
81848443 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
81848470 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
81848502 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
81848530 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
81848557 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
81848584 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
81848611 TTATG
1 TTATG
81848616 ATATCAAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 22 0.18
27 59 0.49
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:81848500 original size:114 final size:114
Alignment explanation
Indices: 81848366--81848587 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
81848356 ACTAGTTATG
* * * *
81848366 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
81848430 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
81848480 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
81848545 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
81848588 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:81848740 original size:15 final size:15
Alignment explanation
Indices: 81848720--81848775 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
81848710 AAGTAGCGGG
81848720 ATTAAATAATATTTA
1 ATTAAATAATATTTA
*
81848735 ATTAAATAATCTTT-
1 ATTAAATAATATTTA
81848749 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
81848764 ATTAAATAATAT
1 ATTAAATAATAT
81848776 ACATGTCGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
12 2 0.06
13 5 0.15
14 4 0.12
15 15 0.44
16 6 0.18
17 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:81849016 original size:24 final size:24
Alignment explanation
Indices: 81848952--81849019 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
81848942 ACTTAAATGG
81848952 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
*
81848976 TAAAATGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
* *
81849000 TAAAACAGACGAGAATATTT
1 TAAAACGGACGATAATATTT
81849020 CAATAATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 36 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:81853939 original size:26 final size:28
Alignment explanation
Indices: 81853906--81853958 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
81853896 ATCTTCTACA
*
81853906 TTAAAATCC-AAAATT-ATACTCTAAAT
1 TTAAAATCCTAAAATTCAGACTCTAAAT
*
81853932 TTAAAATCCTAAACTTCAGACTCTAAA
1 TTAAAATCCTAAAATTCAGACTCTAAA
81853959 CCCTAAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
27 5 0.22
28 9 0.39
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (28 bp):
TTAAAATCCTAAAATTCAGACTCTAAAT
Found at i:81854342 original size:18 final size:18
Alignment explanation
Indices: 81854321--81854365 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
81854311 TTACACCCTA
81854321 AATATATATTACAA-TCTT
1 AATATATATTACAAGT-TT
*
81854339 AATATATATTAGAAGTTT
1 AATATATATTACAAGTTT
81854357 AATATATAT
1 AATATATAT
81854366 GTATAACAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (18 bp):
AATATATATTACAAGTTT
Found at i:81854724 original size:41 final size:41
Alignment explanation
Indices: 81854678--81854989 Score: 464
Period size: 41 Copynumber: 7.6 Consensus size: 41
81854668 TTACTCTTTT
*
81854678 GCGGCGTTTTTCTAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* *
81854719 ACGGCGTTTTTCCAAAAGCGCCGCTAAAACATTGG-CTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
*
81854759 GCGGCGTTTTTCCATAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* *
81854800 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATTGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* *
81854841 GAGGCGTTTTTCCAAAAGCGCCGCTAAAACATCAGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* * *
81854882 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTTGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* * * * *
81854923 GCAGCGTTTTTCCAGAAGCGCTGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
*
81854964 GCGGCGTTTTTCCATAAGCGCCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
81854990 TTGTACAGTT
Statistics
Matches: 245, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 37 0.15
41 208 0.85
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
Found at i:81855046 original size:41 final size:41
Alignment explanation
Indices: 81854995--81855094 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 41
81854985 CGCTATTGTA
*
81854995 CAGTTTTTAGCGGCGTTTGGGGCAAAAACACCGCCATTGCT
1 CAGTTTTTAGCGGCGTTTGGAGCAAAAACACCGCCATTGCT
* * *
81855036 CAGTTTTTAGCGGCGTTTGGATCAAAAACGCCGCTATTGCT
1 CAGTTTTTAGCGGCGTTTGGAGCAAAAACACCGCCATTGCT
* * *
81855077 CTGTTTTTTGCAGCGTTT
1 CAGTTTTTAGCGGCGTTT
81855095 TATTGCAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (41 bp):
CAGTTTTTAGCGGCGTTTGGAGCAAAAACACCGCCATTGCT
Found at i:81856349 original size:29 final size:30
Alignment explanation
Indices: 81856316--81856375 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
81856306 CAAAAAAAAT
*
81856316 ATAAGTACCATATTAAAA-AAATGTATCAA
1 ATAAGTACCATATTAAAATAAAAGTATCAA
81856345 ATAAGTACCATATTAAAATAAAAGTATCAA
1 ATAAGTACCATATTAAAATAAAAGTATCAA
81856375 A
1 A
81856376 CACGAATACT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 18 0.62
30 11 0.38
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.27
Consensus pattern (30 bp):
ATAAGTACCATATTAAAATAAAAGTATCAA
Found at i:81858402 original size:11 final size:11
Alignment explanation
Indices: 81858388--81858416 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
81858378 TGTTAATTCA
81858388 TTTAAAAACAT
1 TTTAAAAACAT
81858399 TTTAAAAACAT
1 TTTAAAAACAT
81858410 TTTAAAA
1 TTTAAAA
81858417 CGAGTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
TTTAAAAACAT
Found at i:81859807 original size:87 final size:87
Alignment explanation
Indices: 81859627--81859784 Score: 237
Period size: 87 Copynumber: 1.8 Consensus size: 87
81859617 TAAGTTCGGC
* * *
81859627 GAATTCATCAAGTTCATCTTAATAGGACCACCCAAAATATGGGATATGAACTCATTAATAGTAAT
1 GAATTCATCAAGTCCATCTCAATAGGACCACCCAAAATATGGGATATGAACTCATTAAGAGTAAT
*
81859692 AAACTCAACCTCTCAAGTCGAT
66 AAACTCAACCTCGCAAGTCGAT
* * * *
81859714 GAATTCATCAAGTCCGTCTCAATAGGACCACCCAAAATCTGGGCTATGAATTCATTAAGAGTAA-
1 GAATTCATCAAGTCCATCTCAATAGGACCACCCAAAATATGGGATATGAACTCATTAAGAGTAAT
81859778 AAACTCA
66 AAACTCA
81859785 TCCCTACGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
86 7 0.11
87 57 0.89
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.26
Consensus pattern (87 bp):
GAATTCATCAAGTCCATCTCAATAGGACCACCCAAAATATGGGATATGAACTCATTAAGAGTAAT
AAACTCAACCTCGCAAGTCGAT
Found at i:81863142 original size:39 final size:39
Alignment explanation
Indices: 81863081--81863274 Score: 207
Period size: 39 Copynumber: 5.0 Consensus size: 39
81863071 ATTTGATGTG
*
81863081 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
81863120 TATCCGGACTTAAGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
81863159 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
81863198 TGTCCGGGC-TAAAGTCTCGCAGGCT-TCGAGCTGGTATTA
1 TATCCGGACTTAAGGTC-CGCAGGCTAT-GTGCTGGAATTA
* ** *
81863237 TA-CCGGGCTTAAATTCCCACAGGCT-TGTGCTGGTAATT
1 TATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AATT
81863275 CCCACAGGCT
Statistics
Matches: 133, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
38 18 0.14
39 114 0.86
40 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:81870229 original size:39 final size:39
Alignment explanation
Indices: 81870175--81870298 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
81870165 ATTTGATGTG
81870175 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
81870214 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
81870253 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
81870292 TGTCCGG
1 TATCCGG
81870299 GCTAAAGTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:81870312 original size:39 final size:39
Alignment explanation
Indices: 81870175--81870336 Score: 202
Period size: 39 Copynumber: 4.2 Consensus size: 39
81870165 ATTTGATGTG
* *
81870175 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* *
81870214 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
*
81870253 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * * * * *
81870292 TGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTATTA
1 TATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAATTA
81870331 TA-CCGG
1 TATCCGG
81870337 GTTTAAATTC
Statistics
Matches: 111, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 9 0.08
39 102 0.92
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:81870351 original size:78 final size:78
Alignment explanation
Indices: 81870175--81870363 Score: 197
Period size: 78 Copynumber: 2.4 Consensus size: 78
81870165 ATTTGATGTG
** * **
81870175 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTA
*
81870240 TGTGCTGGAATTA
66 TGAGCTGGAATTA
* * * *
81870253 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGGCT
*
81870317 -TCGAGCTGGTATTA
65 AT-GAGCTGGAATTA
** *
81870331 TA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGG
1 TATCCGGACTTAAAGT-CCGCAGGCTATGTGCTGG
81870364 TAATTGGTTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
77 21 0.22
78 73 0.78
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTA
TGAGCTGGAATTA
Found at i:81870363 original size:38 final size:38
Alignment explanation
Indices: 81870191--81870368 Score: 148
Period size: 39 Copynumber: 4.6 Consensus size: 38
81870181 GACTTAGGGT
* **
81870191 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTC
* *
81870230 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTC
* * * *
81870269 CCGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTC
1 CCGCAGGCTATGTGCTGGAATTAT-ACCGGGTTAAAGTC
* * *
81870308 CCGCAGGCT-TCGAGCTGGTATTATACCGGGTTTAAATTC
1 CCGCAGGCTAT-GTGCTGGAATTATACCGGG-TTAAAGTC
81870347 CCGCAGGCT-TGTGCTGGTAATT
1 CCGCAGGCTATGTGCTGG-AATT
81870369 GGTTTCAAGT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 16 0.14
39 102 0.86
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (38 bp):
CCGCAGGCTATGTGCTGGAATTATACCGGGTTAAAGTC
Found at i:81873347 original size:24 final size:24
Alignment explanation
Indices: 81873290--81873341 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
81873280 TTTCTAGAAG
*
81873290 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
81873314 ATTTAGCATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
81873338 ATTT
1 ATTT
81873342 GACATTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:81873352 original size:24 final size:24
Alignment explanation
Indices: 81873290--81873353 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
81873280 TTTCTAGAAG
* *
81873290 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTGATTAGTATAATAT
*
81873314 ATTTAGCATTTATTAGTATAATAT
1 ATTTAGCATTGATTAGTATAATAT
81873338 ATTT-GACATTGATTAG
1 ATTTAG-CATTGATTAG
81873354 AATTAGGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 1 0.03
24 36 0.97
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTGATTAGTATAATAT
Found at i:81887493 original size:65 final size:65
Alignment explanation
Indices: 81887389--81887510 Score: 210
Period size: 65 Copynumber: 1.9 Consensus size: 65
81887379 TATGAAAGTG
81887389 GATTCATCAAGGTTCATTTAAATAATTTATTCACTATTTAATT-CTATTCCTACTATTCGAAAAT
1 GATTCATCAAGGTTCATTTAAATAATTTATTCACTATTTAATTAC-ATTCCTACTATTCGAAAAT
81887453 A
65 A
* *
81887454 GATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTACATTCCTACTATT
1 GATTCATCAAGGTTCATTTAAATAATTTATTCACTATTTAATTACATTCCTACTATT
81887511 TTTAGTGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
65 53 0.98
66 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (65 bp):
GATTCATCAAGGTTCATTTAAATAATTTATTCACTATTTAATTACATTCCTACTATTCGAAAATA
Found at i:81892329 original size:39 final size:40
Alignment explanation
Indices: 81892212--81892396 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
81892202 GCTACTCGTT
* *
81892212 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGATT-TAGTAACTCGCA
* *
81892252 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGATTTAGTAACTCGCA
* * *
81892292 CCAATGCCTTCGAG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81892331 CAAATGCCTTC-AGATCTTAGTCCGGATATCGTCACTTAGCA
1 CAAATGCCTTCGAGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
81892372 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGAGACTTAGCCCGGA
81892397 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGAGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81892380 original size:79 final size:80
Alignment explanation
Indices: 81892212--81892396 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 80
81892202 GCTACTCGTT
* * * *
81892212 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGAGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
* *
81892276 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
81892293 CAATGCCTTCGAG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* *
81892356 ATATCGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
81892372 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGAGACTTAGCCCGGA
81892397 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.02
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:81893108 original size:47 final size:47
Alignment explanation
Indices: 81893039--81893236 Score: 342
Period size: 47 Copynumber: 4.2 Consensus size: 47
81893029 ATATACACTA
81893039 CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
81893086 CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
81893133 CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
* * * *
81893180 CATCACATTGGCCATTCGGTCTTATCACATATATATACACTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCTC--ATATATGCATTTTCACATT
81893229 CATCACAT
1 CATCACAT
81893237 CGAATCCTAA
Statistics
Matches: 145, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 120 0.83
49 25 0.17
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.37
Consensus pattern (47 bp):
CATCACATTGGCCATTCGGCCTTATCTCATATATGCATTTTCACATT
Found at i:81901768 original size:21 final size:20
Alignment explanation
Indices: 81901736--81901774 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
81901726 TTATAATGAC
81901736 CACACGGACGTGTTGCCCTTT
1 CACACGGACGTG-TGCCCTTT
81901757 CACACAGG-CGTGTGCCCT
1 CACAC-GGACGTGTGCCCT
81901775 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 9 0.53
22 2 0.12
ACGTcount: A:0.15, C:0.36, G:0.26, T:0.23
Consensus pattern (20 bp):
CACACGGACGTGTGCCCTTT
Found at i:81902052 original size:26 final size:26
Alignment explanation
Indices: 81902016--81902071 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
81902006 ACTGAGTAGG
81902016 CACTCAGTGGTATTTCTATAAACCAA
1 CACTCAGTGGTATTTCTATAAACCAA
81902042 CACTCAGTGGTATTTCTATAAACCAA
1 CACTCAGTGGTATTTCTATAAACCAA
81902068 CACT
1 CACT
81902072 TAAATAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (26 bp):
CACTCAGTGGTATTTCTATAAACCAA
Found at i:81903692 original size:9 final size:9
Alignment explanation
Indices: 81903680--81903740 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
81903670 CTGCTGTTCT
*
81903680 TTTTGTTTC
1 TTTTATTTC
*
81903689 TTTTACTTC
1 TTTTATTTC
81903698 TTTT-TTTC
1 TTTTATTTC
81903706 TTTTATTTC
1 TTTTATTTC
81903715 -TTTAGTTTC
1 TTTTA-TTTC
81903724 TTTTATTTAC
1 TTTTATTT-C
81903734 -TTTATTT
1 TTTTATTT
81903741 TATTTACTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
8 11 0.24
9 29 0.64
10 5 0.11
ACGTcount: A:0.10, C:0.11, G:0.03, T:0.75
Consensus pattern (9 bp):
TTTTATTTC
Found at i:81903707 original size:17 final size:17
Alignment explanation
Indices: 81903680--81903728 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
81903670 CTGCTGTTCT
81903680 TTTTGTTTCTTTTACTTC
1 TTTT-TTTCTTTTACTTC
*
81903698 TTTTTTTCTTTTATTTC
1 TTTTTTTCTTTTACTTC
*
81903715 TTTAGTTTCTTTTA
1 TTT-TTTTCTTTTA
81903729 TTTACTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.08, C:0.12, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTTTTTCTTTTACTTC
Found at i:81903741 original size:14 final size:14
Alignment explanation
Indices: 81903724--81903753 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81903714 CTTTAGTTTC
*
81903724 TTTTATTTACTTTA
1 TTTTATTTACTGTA
81903738 TTTTATTTACTGTA
1 TTTTATTTACTGTA
81903752 TT
1 TT
81903754 GTTTTAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTTATTTACTGTA
Found at i:81904590 original size:3 final size:3
Alignment explanation
Indices: 81904582--81904622 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
81904572 TTGCTAATGC
81904582 TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81904623 AAACTTCAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:81911056 original size:18 final size:17
Alignment explanation
Indices: 81911029--81911062 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81911019 CTACATCCAT
81911029 AAACAAAAAAAAAGGCC
1 AAACAAAAAAAAAGGCC
81911046 AAACAAAAAAAAAGGCC
1 AAACAAAAAAAAAGGCC
81911063 TCCTTAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.18, G:0.12, T:0.00
Consensus pattern (17 bp):
AAACAAAAAAAAAGGCC
Found at i:81915695 original size:30 final size:30
Alignment explanation
Indices: 81915638--81915695 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
81915628 TAGGCACTTC
* *
81915638 CACACGGGTGAGCCACACACTCGTGTGTGA
1 CACACGGGTGAGCCACACACCCATGTGTGA
*
81915668 CACACGGGT-AGACCACACGCCCATGTGT
1 CACACGGGTGAG-CCACACACCCATGTGT
81915696 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGGGTGAGCCACACACCCATGTGTGA
Found at i:81924869 original size:14 final size:14
Alignment explanation
Indices: 81924850--81924881 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
81924840 AGGTCATTTA
*
81924850 GCCCAACCAAATTG
1 GCCCAACCAAACTG
81924864 GCCCAACCAAACTG
1 GCCCAACCAAACTG
81924878 GCCC
1 GCCC
81924882 GGTGATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.16, T:0.09
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:81929779 original size:14 final size:14
Alignment explanation
Indices: 81929760--81929791 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
81929750 AGGTCATTTA
81929760 GCCCAACCAAACTG
1 GCCCAACCAAACTG
81929774 GCCCAACCAAACTG
1 GCCCAACCAAACTG
81929788 GCCC
1 GCCC
81929792 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:81957727 original size:50 final size:50
Alignment explanation
Indices: 81957652--81957750 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
81957642 TTAATATATT
*
81957652 TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGGGTGATTGAAA
1 TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAAA
*
81957702 TTTGGGAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAA
1 TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAA
81957751 CTTGAAAACT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (50 bp):
TTTGGCAATTAATTTTCAAGTCAGACAAGTGGCCCAATGAGTGATTGAAA
Found at i:81958183 original size:49 final size:50
Alignment explanation
Indices: 81958091--81958214 Score: 137
Period size: 49 Copynumber: 2.5 Consensus size: 50
81958081 AGTGGCCCGG
* *
81958091 CAATGATGATTTTCACTAATTT-TATATTCTACCATCCCAGGTGGCGC-AA
1 CAATGATGGTTTTCAC-AATTTGCATATTCTACCATCCCAGGTGGCGCGAA
*** *
81958140 CAATGATGGTTTTCACAATTTGCATATTCTACCATCTTGGGTGGCTCGAA
1 CAATGATGGTTTTCACAATTTGCATATTCTACCATCCCAGGTGGCGCGAA
* **
81958190 -AATGATGGCTTTCACTGTTTGCATA
1 CAATGATGGTTTTCACAATTTGCATA
81958215 CTGTTTGCAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 5 0.08
49 57 0.89
50 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (50 bp):
CAATGATGGTTTTCACAATTTGCATATTCTACCATCCCAGGTGGCGCGAA
Found at i:81960107 original size:16 final size:16
Alignment explanation
Indices: 81960086--81960118 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81960076 TATTATTTTC
*
81960086 TTATATATTATGAAAT
1 TTATATAATATGAAAT
81960102 TTATATAATATGAAAT
1 TTATATAATATGAAAT
81960118 T
1 T
81960119 GAAATATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (16 bp):
TTATATAATATGAAAT
Found at i:81968504 original size:86 final size:85
Alignment explanation
Indices: 81968330--81968751 Score: 349
Period size: 86 Copynumber: 4.9 Consensus size: 85
81968320 TAAAATATTG
* ** * * *
81968330 GTGTGCCAGTATAGTTG-CTTTAGTTTATCT-ATTGATGCATTGTGTGTTCTAGTATAGTTACTT
1 GTGTGCCAATATAGTTGCCTCGA-TTTATCTGA-TGATGCATTATGTGTGCCAGTATAGTTACTT
* * *
81968393 CG-ATATACCTGATCATGTACTGT
64 CGTATAT-TC-GATGATGCACTGT
* * * * * * *
81968416 GTGTGTCAGTATAGTTGCCTCGATTTATCTGATGATGTACTGTGTGTGCTAGTATAGTTTCTTC-
1 GTGTGCCAATATAGTTGCCTCGATTTATCTGATGATGCATTATGTGTGCCAGTATAGTTACTTCG
* * * *
81968480 TTTTTTCGATAATGCACTGG
66 TATATTCGATGATGCACTGT
* *
81968500 GTGTGCCAATATAATTG-CTACTG-TTTATCAGATGATGCA-TAGTGTGTGCCAGTATAGTTACT
1 GTGTGCCAATATAGTTGCCT-C-GATTTATCTGATGATGCATTA-TGTGTGCCAGTATAGTTACT
81968562 TCGGTATATTCGATGATGCACTGT
63 TC-GTATATTCGATGATGCACTGT
* * ** * * * * * *
81968586 ATATGCCAATATAGTTGTTTCAATATATCTGATGATGTATTATGTATGCTAGTATGGTTACTTCG
1 GTGTGCCAATATAGTTGCCTCGATTTATCTGATGATGCATTATGTGTGCCAGTATAGTTACTTC-
* *
81968651 GTATATCCAATGATGCACTGT
65 GTATATTCGATGATGCACTGT
* * *
81968672 GTGTGTCAATATAGTTGCTTCGGTTTATC-GATGATGCATTATGTGTGCCAGTATAGTTACTTCG
1 GTGTGCCAATATAGTTGCCTCGATTTATCTGATGATGCATTATGTGTGCCAGTATAGTTACTTC-
81968736 GTATA-TCTGATGATGC
65 GTATATTC-GATGATGC
81968752 GTTACGAAGC
Statistics
Matches: 273, Mismatches: 51, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
83 3 0.01
84 60 0.22
85 45 0.16
86 158 0.58
87 7 0.03
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.41
Consensus pattern (85 bp):
GTGTGCCAATATAGTTGCCTCGATTTATCTGATGATGCATTATGTGTGCCAGTATAGTTACTTCG
TATATTCGATGATGCACTGT
Found at i:81968577 original size:43 final size:43
Alignment explanation
Indices: 81968330--81968751 Score: 316
Period size: 43 Copynumber: 9.9 Consensus size: 43
81968320 TAAAATATTG
** * *
81968330 GTGTGCCAGTATAGTTGCTTTAGTTTATCT-ATTGATGCATTGT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGA-TGATGCACTGT
* * * * * * *
81968373 GTGTTCTAGTATAGTTACTTCGATATACCTGATCATGTACTGT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
* * * * *
81968416 GTGTGTCAGTATAGTTGCCTCGATTTATCTGATGATGTACTGT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
* * * * * * *
81968459 GTGTGCTAGTATAGTTTCTTC-TTTTTTC-GATAATGCACTGG
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
* * * * * *
81968500 GTGTGCCAATATAATTGCTACTGTTTATCAGATGATGCA-TAGT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACT-GT
*
81968543 GTGTGCCAGTATAGTTACTTCGGTATAT-TCGATGATGCACTGT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCT-GATGATGCACTGT
* * * * ** * * *
81968586 ATATGCCAATATAGTTGTTTCAATATATCTGATGATGTATTAT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
* * * * **
81968629 GTATGCTAGTATGGTTACTTCGGTATATCCAATGATGCACTGT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
* * * * *
81968672 GTGTGTCAATATAGTTGCTTCGGTTTATC-GATGATGCATTAT
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
*
81968714 GTGTGCCAGTATAGTTACTTCGGTATATCTGATGATGC
1 GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGC
81968752 GTTACGAAGC
Statistics
Matches: 290, Mismatches: 81, Indels: 16
0.75 0.21 0.04
Matches are distributed among these distances:
41 26 0.09
42 46 0.16
43 215 0.74
44 3 0.01
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.41
Consensus pattern (43 bp):
GTGTGCCAGTATAGTTGCTTCGGTATATCTGATGATGCACTGT
Found at i:81968617 original size:170 final size:170
Alignment explanation
Indices: 81968329--81968751 Score: 456
Period size: 170 Copynumber: 2.5 Consensus size: 170
81968319 ATAAAATATT
* * *** * * * *
81968329 GGTGTGCCAGTATAGTTGCTTTAGTTTATCTATTGATGCATTGTGTGTTCTAGTATAGTTACTTC
1 GGTGTGCCAATATAATTGCTACGGTTTATCGA-TGATGCATAGTGTGTGCCAGTATAGTTACTTC
* * * * * * * * * * *
81968394 GATATACCTGATCATGTACTGTGTGTGTCAGTATAGTTGCCTCGATTTATCTGATGATGTACTGT
65 GGTATATCTGATGATGCACTGTATATGCCAATATAGTTGCCTCAATATATCTGATGATGTACTAT
* * * * * *
81968459 GTGTGCTAGTATAGTTTCTTC-TTTTTTCGATAATGCACTG
130 GTATGCTAGTATAGTTACTTCGTATATCCAATAATGCACTG
*
81968499 GGTGTGCCAATATAATTGCTACTGTTTATCAGATGATGCATAGTGTGTGCCAGTATAGTTACTTC
1 GGTGTGCCAATATAATTGCTACGGTTTATC-GATGATGCATAGTGTGTGCCAGTATAGTTACTTC
** *
81968564 GGTATAT-TCGATGATGCACTGTATATGCCAATATAGTTGTTTCAATATATCTGATGATGTATTA
65 GGTATATCT-GATGATGCACTGTATATGCCAATATAGTTGCCTCAATATATCTGATGATGTACTA
* *
81968628 TGTATGCTAGTATGGTTACTTCGGTATATCCAATGATGCACTG
129 TGTATGCTAGTATAGTTACTTC-GTATATCCAATAATGCACTG
* * * *
81968671 TGTGTGTCAATATAGTTGCTTCGGTTTATCGATGATGCATTA-TGTGTGCCAGTATAGTTACTTC
1 GGTGTGCCAATATAATTGCTACGGTTTATCGATGATGCA-TAGTGTGTGCCAGTATAGTTACTTC
81968735 GGTATATCTGATGATGC
65 GGTATATCTGATGATGC
81968752 GTTACGAAGC
Statistics
Matches: 211, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
169 1 0.00
170 121 0.57
171 47 0.22
172 42 0.20
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.41
Consensus pattern (170 bp):
GGTGTGCCAATATAATTGCTACGGTTTATCGATGATGCATAGTGTGTGCCAGTATAGTTACTTCG
GTATATCTGATGATGCACTGTATATGCCAATATAGTTGCCTCAATATATCTGATGATGTACTATG
TATGCTAGTATAGTTACTTCGTATATCCAATAATGCACTG
Found at i:81970974 original size:46 final size:46
Alignment explanation
Indices: 81970914--81971129 Score: 260
Period size: 46 Copynumber: 5.0 Consensus size: 46
81970904 TTTGACATGA
* * * * * *
81970914 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
81970960 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
81971006 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
81971052 TGCCATGGTATCTTT----CA-------AC-CATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
81971086 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
81971130 AGAGCACACT
Statistics
Matches: 150, Mismatches: 7, Indels: 26
0.82 0.04 0.14
Matches are distributed among these distances:
34 30 0.20
35 2 0.01
38 2 0.01
42 2 0.01
45 6 0.04
46 108 0.72
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:81971077 original size:34 final size:34
Alignment explanation
Indices: 81971037--81971107 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
81971027 TGGTCTTACA
81971037 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
81971071 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
81971105 CAT
1 CAT
81971108 GGTCTTACAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (34 bp):
CATTTCATATCAGGCTGCCATGGTATCTTTCAAC
Found at i:81975037 original size:27 final size:25
Alignment explanation
Indices: 81975006--81975073 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 25
81974996 AAAATCACAA
81975006 AAAAAATTGTAAAATTTAAAATATTTAT
1 AAAAAATT-TAAAA-TTAAAATA-TTAT
*
81975034 AAAAAAATTCAAACATTAAAATATTAT
1 -AAAAAATTTAAA-ATTAAAATATTAT
81975061 -AAAAATTATAAAA
1 AAAAAATT-TAAAA
81975074 AAAATTCTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
25 8 0.23
26 3 0.09
27 4 0.11
28 11 0.31
29 9 0.26
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32
Consensus pattern (25 bp):
AAAAAATTTAAAATTAAAATATTAT
Found at i:81975038 original size:28 final size:26
Alignment explanation
Indices: 81975005--81975065 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 26
81974995 AAAAATCACA
81975005 AAAAAAATTGTAAAATTTAAAATATTTAT
1 AAAAAAATT-TAAAA-TTAAAATA-TTAT
*
81975034 AAAAAAATTCAAACATTAAAATATTAT
1 AAAAAAATTTAAA-ATTAAAATATTAT
81975061 AAAAA
1 AAAAA
81975066 TTATAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 9 0.30
28 11 0.37
29 10 0.33
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAAAAATTTAAAATTAAAATATTAT
Found at i:81976928 original size:27 final size:27
Alignment explanation
Indices: 81976888--81976963 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
81976878 GGCAAAACAA
** *
81976888 TCATTTTACCCTACAGGGGTATGTCAG
1 TCATTTTATACTACAAGGGTATGTCAG
* * *
81976915 TCATTTTATGCTACAAGGGTATTTCGG
1 TCATTTTATACTACAAGGGTATGTCAG
*
81976942 TAATTTTATACTACAAGGGTAT
1 TCATTTTATACTACAAGGGTAT
81976964 TTTGATAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (27 bp):
TCATTTTATACTACAAGGGTATGTCAG
Found at i:81976964 original size:27 final size:27
Alignment explanation
Indices: 81976898--81976976 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
81976888 TCATTTTACC
* * * * *
81976898 CTACAGGGGTATGTCAGTCATTTTATG
1 CTACAAGGGTATTTCGGTAATTTTATA
81976925 CTACAAGGGTATTTCGGTAATTTTATA
1 CTACAAGGGTATTTCGGTAATTTTATA
* *
81976952 CTACAAGGGTATTTTGATAATTTTA
1 CTACAAGGGTATTTCGGTAATTTTA
81976977 CAAATCGAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (27 bp):
CTACAAGGGTATTTCGGTAATTTTATA
Found at i:81976987 original size:27 final size:27
Alignment explanation
Indices: 81976957--81977351 Score: 293
Period size: 27 Copynumber: 14.7 Consensus size: 27
81976947 TTATACTACA
81976957 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
81976984 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
*
81977011 AGGGTATTTT-AGTAATTTTACAAGTCG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * * * *
81977038 AGGGTATTTCGGTAATTTAAAAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
81977065 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
81977092 AGGGTGTTTCGGTAATTTTACAACTCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
81977119 ATGGT-GTTTCAGTAATTTTACAAATCA
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * * *
81977146 AGGGT-GTTTCAGTAATTTCACAAATTG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
81977173 GGGGTA-TTTCAGTAATTTTACAAATTG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* *
81977200 AGGGT-GTTTCAGTAATTTTACAAATCG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * * * *
81977227 ATGGT-GTTTCAGTAATTTTATAAATCA
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
81977254 ATGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
81977281 AGGGTATTTCGGTAATTTTACAAA-CG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
81977307 -GGAGTATTTTGGTAATTTTACAAACCG
1 AGG-GTATTTTGATAATTTTACAAATCG
* * *
81977334 GGGGTATTTCGGTAATTT
1 AGGGTATTTTGATAATTT
81977352 CTTTTTATTA
Statistics
Matches: 316, Mismatches: 43, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.01
26 25 0.08
27 285 0.90
28 4 0.01
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTACAAATCG
Found at i:81976988 original size:54 final size:56
Alignment explanation
Indices: 81976930--81977351 Score: 342
Period size: 54 Copynumber: 7.8 Consensus size: 56
81976920 TTATGCTACA
* * * *
81976930 AGGGTATTTCGGTAATTTTATACTA-CAAGGGTATTTTGA-TAATTTTACAAATCG
1 AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
* * *
81976984 AGGGTGTTTCGATAATTTTACA-AATCGAGGGTATTTT-AGTAATTTTACAAGTCG
1 AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
* * * *
81977038 AGGGTATTTCGGTAA-TTTAAAAAATTGAGGGTATTTCG-GTAATTTTACAAATCG
1 AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
* * * *
81977092 AGGGTGTTTCGGTAATTTT--ACAACTCGATGGT-GTTTCAGTAATTTTACAAATCA
1 AGGGTGTTTCGGTAATTTTAAACAA-TCGAGGGTATTTTGAGTAATTTTACAAATCG
* * * * * * *
81977146 AGGGTGTTTCAGTAATTTCACA-AATTGGGGGTA-TTTCAGTAATTTTACAAATTG
1 AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
* * * * * * *
81977200 AGGGTGTTTCAGTAATTTTACA-AATCGATGGT-GTTTCAGTAATTTTATAAATCA
1 AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
* * * *
81977254 ATGGTATTTCGGTAATTTTACA-AATCGAGGGTATTTCG-GTAATTTTACAAA-CG
1 AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
* * * * * *
81977307 -GGAGTATTTTGGTAATTTTACA-AACCGGGGGTATTTCG-GTAATTT
1 AGG-GTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTT
81977352 CTTTTTATTA
Statistics
Matches: 308, Mismatches: 47, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.00
53 52 0.17
54 247 0.80
55 7 0.02
56 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (56 bp):
AGGGTGTTTCGGTAATTTTAAACAATCGAGGGTATTTTGAGTAATTTTACAAATCG
Found at i:81977015 original size:81 final size:80
Alignment explanation
Indices: 81976930--81977351 Score: 342
Period size: 81 Copynumber: 5.2 Consensus size: 80
81976920 TTATGCTACA
* *
81976930 AGGGTATTTCGGTAATTTTATACTACAAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCG
1 AGGGTATTTCGGTAATTTTA-AATACGAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCG
81976995 ATAATTTTACAAATCG
65 ATAATTTTACAAATCG
** * * * * * *
81977011 AGGGTATTTTAGTAATTTTACAAGT-CGAGGGTATTTCGGTAATTTAAAAAATTGAGGGTATTTC
1 AGGGTATTTCGGTAATTTTA-AA-TACGAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTC
*
81977075 GGTAATTTTACAAATCG
64 GATAATTTTACAAATCG
* * * * *
81977092 AGGGTGTTTCGGTAATTTTACAACT-CGATGGT-GTTTCAGTAATTTTACAAATCAAGGGTGTTT
1 AGGGTATTTCGGTAATTTTA-AA-TACGAGGGTATTTTGA-TAATTTTACAAATCGAGGGTGTTT
* *
81977155 C-AGTAATTTCACAAATTG
63 CGA-TAATTTTACAAATCG
* * * * * *
81977173 GGGGTATTTCAGTAATTTTACAA-ATTGAGGGT-GTTTCAGTAATTTTACAAATCGATGGTGTTT
1 AGGGTATTTCGGTAATTTTA-AATA-CGAGGGTATTTTGA-TAATTTTACAAATCGAGGGTGTTT
* *
81977236 C-AGTAATTTTATAAATCA
63 CGA-TAATTTTACAAATCG
* * * *
81977254 ATGGTATTTCGGTAATTTTACAA-ATCGAGGGTATTTCGGTAATTTTACAAA-CG-GGAGTATTT
1 AGGGTATTTCGGTAATTTTA-AATA-CGAGGGTATTTTGATAATTTTACAAATCGAGG-GTGTTT
* * *
81977316 TGGTAATTTTACAAACCG
63 CGATAATTTTACAAATCG
*
81977334 GGGGTATTTCGGTAATTT
1 AGGGTATTTCGGTAATTT
81977352 CTTTTTATTA
Statistics
Matches: 276, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
79 1 0.00
80 37 0.13
81 235 0.85
82 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCGGTAATTTTAAATACGAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGA
TAATTTTACAAATCG
Found at i:81980781 original size:13 final size:13
Alignment explanation
Indices: 81980739--81980789 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
81980729 TGAATGTTCC
* *
81980739 TTTTTTGTTGTTT
1 TTTTTTGCTGATT
81980752 TTTTTTGCTGGAAATT
1 TTTTTTGCT-G--ATT
81980768 TTTTTTGCTGATT
1 TTTTTTGCTGATT
81980781 TTTTTTGCT
1 TTTTTTGCT
81980790 CTTTTTTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 20 0.61
14 1 0.03
15 1 0.03
16 11 0.33
ACGTcount: A:0.08, C:0.06, G:0.16, T:0.71
Consensus pattern (13 bp):
TTTTTTGCTGATT
Found at i:81981044 original size:29 final size:29
Alignment explanation
Indices: 81981012--81981117 Score: 81
Period size: 30 Copynumber: 3.6 Consensus size: 29
81981002 GTAATTTTTA
*
81981012 GAAAATTTAGGGTTAAAGTGTAATTTAAG
1 GAAAATTTAGGGTTAAAGTGAAATTTAAG
* * * *
81981041 GAAAGTTAAGGGGTCT-AAGTAAAATTTAAA
1 GAAAATTTA-GGGT-TAAAGTGAAATTTAAG
* * *
81981071 GAAAGTTTAAGGGTCAAAATGAAATTT-AG
1 GAAAATTT-AGGGTTAAAGTGAAATTTAAG
*
81981100 GAAAAGTTTAGGGATAAA
1 GAAAA-TTTAGGGTTAAA
81981118 AATGCAATTT
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
29 19 0.32
30 38 0.64
31 2 0.03
ACGTcount: A:0.45, C:0.02, G:0.25, T:0.28
Consensus pattern (29 bp):
GAAAATTTAGGGTTAAAGTGAAATTTAAG
Found at i:81981096 original size:30 final size:30
Alignment explanation
Indices: 81981011--81981098 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
81981001 TGTAATTTTT
* * *
81981011 AGAAAATTT-AGGGTTAAAGTGTAATTTAA
1 AGAAAGTTTAAGGGTCAAAGTGAAATTTAA
* * *
81981040 GGAAAG-TTAAGGGGTCTAAGTAAAATTTAA
1 AGAAAGTTTAA-GGGTCAAAGTGAAATTTAA
*
81981070 AGAAAGTTTAAGGGTCAAAATGAAATTTA
1 AGAAAGTTTAAGGGTCAAAGTGAAATTTA
81981099 GGAAAAGTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
28 2 0.04
29 5 0.11
30 35 0.76
31 4 0.09
ACGTcount: A:0.45, C:0.02, G:0.23, T:0.30
Consensus pattern (30 bp):
AGAAAGTTTAAGGGTCAAAGTGAAATTTAA
Found at i:81981155 original size:24 final size:24
Alignment explanation
Indices: 81981124--81981169 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
81981114 TAAAAATGCA
81981124 ATTTTTATTTTTTGAAAATTTTTT
1 ATTTTTATTTTTTGAAAATTTTTT
*
81981148 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTGAAAATTTT
81981170 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTGAAAATTTTTT
Found at i:81981421 original size:10 final size:10
Alignment explanation
Indices: 81981406--81981565 Score: 63
Period size: 10 Copynumber: 16.5 Consensus size: 10
81981396 TGACATATGG
81981406 AAAAAATTAT
1 AAAAAATTAT
81981416 -AAAAA--AT
1 AAAAAATTAT
*
81981423 -AAAAATCA-
1 AAAAAATTAT
*
81981431 ATAAAAGTTAT
1 A-AAAAATTAT
81981442 -AAAAATTAT
1 AAAAAATTAT
* **
81981451 TAAATTTTAAT
1 AAAAAATT-AT
81981462 AAAAAA-TATT
1 AAAAAATTA-T
* *
81981472 TAAAATTTAT
1 AAAAAATTAT
* *
81981482 TA-AAATTAG
1 AAAAAATTAT
81981491 AAAAAAATTAT
1 A-AAAAATTAT
*
81981502 -AAAAATCAT
1 AAAAAATTAT
81981511 AAAAAA-TAT
1 AAAAAATTAT
*
81981520 AAAAAAATTGT
1 -AAAAAATTAT
* *
81981531 AGAATATTAT
1 AAAAAATTAT
*
81981541 -AAAAATCAT
1 AAAAAATTAT
81981550 AAACAAATTAT
1 AAA-AAATTAT
81981561 AAAAA
1 AAAAA
81981566 TGCATAAAAA
Statistics
Matches: 110, Mismatches: 24, Indels: 32
0.66 0.14 0.19
Matches are distributed among these distances:
7 7 0.06
9 36 0.33
10 43 0.39
11 24 0.22
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:81981443 original size:9 final size:9
Alignment explanation
Indices: 81981407--81981566 Score: 81
Period size: 9 Copynumber: 16.7 Consensus size: 9
81981397 GACATATGGA
81981407 AAAAATTAT
1 AAAAATTAT
81981416 AAAAA--AT
1 AAAAATTAT
*
81981423 AAAAATCAAT
1 AAAAAT-TAT
*
81981433 AAAAGTTAT
1 AAAAATTAT
81981442 AAAAATTATT
1 AAAAATTA-T
**
81981452 AAATTTTAAT
1 AAAAATT-AT
*
81981462 AAAAAATATTT
1 -AAAAAT-TAT
*
81981473 AAAATTTAT
1 AAAAATTAT
* *
81981482 TAAAATTAGAA
1 AAAAATT--AT
81981493 AAAAATTAT
1 AAAAATTAT
*
81981502 AAAAATCAT
1 AAAAATTAT
*
81981511 AAAAAATATAA
1 -AAAAAT-TAT
*
81981522 AAAAATTGT
1 AAAAATTAT
*
81981531 AGAATATTAT
1 A-AAAATTAT
*
81981541 AAAAATCAT
1 AAAAATTAT
81981550 AAACAAATTAT
1 -AA-AAATTAT
81981561 AAAAAT
1 AAAAAT
81981567 GCATAAAAAA
Statistics
Matches: 112, Mismatches: 25, Indels: 28
0.68 0.15 0.17
Matches are distributed among these distances:
7 7 0.06
9 42 0.38
10 42 0.38
11 20 0.18
12 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:81981468 original size:21 final size:21
Alignment explanation
Indices: 81981432--81981486 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
81981422 TAAAAATCAA
* *
81981432 TAAAAGTT-ATAAAAATTA-T
1 TAAAATTTAATAAAAAATATT
*
81981451 TAAATTTTAATAAAAAATATT
1 TAAAATTTAATAAAAAATATT
*
81981472 TAAAATTTATTAAAA
1 TAAAATTTAATAAAA
81981487 TTAGAAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 6 0.21
20 9 0.31
21 14 0.48
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TAAAATTTAATAAAAAATATT
Found at i:81981496 original size:20 final size:20
Alignment explanation
Indices: 81981473--81981576 Score: 61
Period size: 20 Copynumber: 5.2 Consensus size: 20
81981463 AAAAATATTT
* *
81981473 AAAATTTATTAAAATTAGAA
1 AAAATTTATAAAAATCAGAA
* *
81981493 AAAAATTATAAAAATCATAA
1 AAAATTTATAAAAATCAGAA
* * * *
81981513 AAAATATAAAAAAAT-TG-T
1 AAAATTTATAAAAATCAGAA
* *
81981531 AGAATATTATAAAAATCATAA
1 AAAAT-TTATAAAAATCAGAA
*
81981552 ACAAA-TTATAAAAATGCATAA
1 A-AAATTTATAAAAAT-CAGAA
81981573 AAAA
1 AAAA
81981577 AGGTCCTTTA
Statistics
Matches: 62, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
18 4 0.06
19 8 0.13
20 41 0.66
21 7 0.11
22 2 0.03
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAATTTATAAAAATCAGAA
Found at i:81981507 original size:30 final size:30
Alignment explanation
Indices: 81981406--81981575 Score: 106
Period size: 30 Copynumber: 5.8 Consensus size: 30
81981396 TGACATATGG
*
81981406 AAAAAATTATAAAAA---ATAAAAATCA-A
1 AAAAAATTATAAAAATTTATAAAAATTATA
* * **
81981432 TAAAAGTTATAAAAA-TTATTAAATTTTAATA
1 AAAAAATTATAAAAATTTA-TAAAAATT-ATA
* *
81981463 AAAAATATT-T-AAAATTTATTAAAATTAGA
1 AAAAA-ATTATAAAAATTTATAAAAATTATA
* *
81981492 AAAAAATTATAAAAA-TCATAAAAAATATA
1 AAAAAATTATAAAAATTTATAAAAATTATA
* * *
81981521 AAAAAATTGT-AGAATATTATAAAAATCATA
1 AAAAAATTATAAAAAT-TTATAAAAATTATA
* **
81981551 AACAAATTATAAAAATGCATAAAAA
1 AAAAAATTATAAAAATTTATAAAAA
81981576 AAGGTCCTTT
Statistics
Matches: 107, Mismatches: 25, Indels: 20
0.70 0.16 0.13
Matches are distributed among these distances:
26 13 0.12
28 7 0.07
29 32 0.30
30 40 0.37
31 13 0.12
32 2 0.02
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (30 bp):
AAAAAATTATAAAAATTTATAAAAATTATA
Found at i:81981575 original size:11 final size:10
Alignment explanation
Indices: 81981492--81981576 Score: 52
Period size: 10 Copynumber: 8.6 Consensus size: 10
81981482 TAAAATTAGA
*
81981492 AAAAAATTAT
1 AAAAAATCAT
81981502 -AAAAATCAT
1 AAAAAATCAT
81981511 AAAAAAT-AT
1 AAAAAATCAT
**
81981520 AAAAAAATTGT
1 -AAAAAATCAT
* * *
81981531 AGAATATTAT
1 AAAAAATCAT
81981541 -AAAAATCAT
1 AAAAAATCAT
*
81981550 AAACAAATTAT
1 AAA-AAATCAT
81981561 -AAAAATGCAT
1 AAAAAAT-CAT
81981571 AAAAAA
1 AAAAAA
81981577 AGGTCCTTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
9 20 0.34
10 26 0.45
11 12 0.21
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.25
Consensus pattern (10 bp):
AAAAAATCAT
Found at i:81981792 original size:38 final size:36
Alignment explanation
Indices: 81981749--81981878 Score: 104
Period size: 38 Copynumber: 3.4 Consensus size: 36
81981739 TAGTATGATA
81981749 ATTTTTATATATTTTTTATGAATTTTATATTTCTTTAC
1 ATTTTTATATATTTTTTAT-AATTTTATATTT-TTTAC
* * *
81981787 ATTTTTTTATAATTTTCTTACAATTTTATAAATTTTTT-T
1 ATTTTTATAT-ATTTT-TTATAATTTTAT--ATTTTTTAC
* **
81981826 ATTTTT-TCTATATTACTATATATTTTATATTTTTTAC
1 ATTTTTATATAT-TTTTTATA-ATTTTATATTTTTTAC
81981863 GATTTTTATA-ATTTTT
1 -ATTTTTATATATTTTT
81981879 CCCCTTTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 19
0.71 0.11 0.19
Matches are distributed among these distances:
36 7 0.10
37 7 0.10
38 28 0.39
39 20 0.28
40 6 0.08
41 4 0.06
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (36 bp):
ATTTTTATATATTTTTTATAATTTTATATTTTTTAC
Found at i:81981807 original size:21 final size:22
Alignment explanation
Indices: 81981771--81981826 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 22
81981761 TTTTTATGAA
*
81981771 TTTTAT-A-TTTCTTTACATTT
1 TTTTATAATTTTCTTTACAATT
81981791 TTTTATAATTTTC-TTACAATT
1 TTTTATAATTTTCTTTACAATT
*
81981812 TTATA-AATTTT-TTTA
1 TTTTATAATTTTCTTTA
81981827 TTTTTTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 15 0.48
21 12 0.39
22 4 0.13
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTATAATTTTCTTTACAATT
Found at i:81982240 original size:91 final size:90
Alignment explanation
Indices: 81982087--81982379 Score: 327
Period size: 91 Copynumber: 3.2 Consensus size: 90
81982077 TTCAAATATT
*
81982087 CAATTGAGTGC-AAAAAAAAA-A-TAGAGGCTTAATTGCTTTGTTTGAAAAAGTTTGAA--GTTT
1 CAATTGAGTGCAAAAAAAAAAGAGTAGAGGCTTAATT-CTTTTTTTGAAAAAGTTT-AAGGGTTT
81982147 TTTTATACATTATGAAATCTAAAGTACC
64 TTTTATACATTATGAAAT-TAAAGTACC
*
81982175 CAATTGAGTGCAAAAAAAAAAGAGTAGGGGCTTAATTACTTTTTTTGAAAAAGTTTAAGGGTTTT
1 CAATTGAGTGCAAAAAAAAAAGAGTAGAGGCTTAATT-CTTTTTTTGAAAAAGTTTAAGGGTTTT
*
81982240 TTTGATACATTATGAAAATTAAAGTACT
65 TTT-ATACATTATG-AAATTAAAGTACC
* * *
81982268 CAATTGAGTG-AAAAAAAATAGAGGCTTA-ATGG-TT--TTTTTTTTTTGAAAAAGTTTGAGGGA
1 CAATTGAGTGCAAAAAAAAAAGA-G--TAGA-GGCTTAATTCTTTTTTTGAAAAAGTTTAAGGG-
81982328 TTTTTTTTATACATTATGAAAGTTAAAGTACC
61 -TTTTTTTATACATTATGAAA-TTAAAGTACC
**
81982360 CAATTGAGTATAAAAAAAAA
1 CAATTGAGTGCAAAAAAAAA
81982380 GATACTTTTT
Statistics
Matches: 179, Mismatches: 11, Indels: 25
0.83 0.05 0.12
Matches are distributed among these distances:
88 11 0.06
89 9 0.05
90 3 0.02
91 53 0.30
92 49 0.27
93 44 0.25
94 6 0.03
95 4 0.02
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (90 bp):
CAATTGAGTGCAAAAAAAAAAGAGTAGAGGCTTAATTCTTTTTTTGAAAAAGTTTAAGGGTTTTT
TTATACATTATGAAATTAAAGTACC
Found at i:81986175 original size:23 final size:23
Alignment explanation
Indices: 81986149--81986197 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
81986139 TTGGATTTGT
81986149 TTCCAACTTGATTTGTTTAAACA
1 TTCCAACTTGATTTGTTTAAACA
81986172 TTCCAACTTGATTTGTTTAAACA
1 TTCCAACTTGATTTGTTTAAACA
81986195 TTC
1 TTC
81986198 TTTTAAGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (23 bp):
TTCCAACTTGATTTGTTTAAACA
Found at i:81996011 original size:2 final size:2
Alignment explanation
Indices: 81996004--81996094 Score: 55
Period size: 2 Copynumber: 45.0 Consensus size: 2
81995994 TTAAAGAATG
* * *
81996004 AT AT AT AT CAT AT CT AT -T AT AT AT CT AT AT AT A- ACT TT CA-
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT -AT
* * *
81996044 AT A- AT AT AT AT AT CT AT AT AT AT AT AT GAC AT AT AT GAT CT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT
81996087 AT AT AT AT
1 AT AT AT AT
81996095 TGAAATGATG
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
1 4 0.06
2 59 0.87
3 5 0.07
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:82010329 original size:11 final size:11
Alignment explanation
Indices: 82010313--82010338 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
82010303 GACCACACTC
82010313 ACACACAATTG
1 ACACACAATTG
82010324 ACACACAATTG
1 ACACACAATTG
82010335 ACAC
1 ACAC
82010339 TAATTCAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (11 bp):
ACACACAATTG
Found at i:82017591 original size:46 final size:46
Alignment explanation
Indices: 82017524--82017744 Score: 336
Period size: 46 Copynumber: 4.8 Consensus size: 46
82017514 TGTAACCCGC
* * * * * *
82017524 CCATAAGCGAACTCAGTCTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
82017570 CCATAAGCGAACTCGGACTCAACTCAATGA-TCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACATTCGCAT
82017616 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82017662 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82017708 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82017745 TGCTCAACCA
Statistics
Matches: 165, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
46 164 0.99
47 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82031939 original size:68 final size:65
Alignment explanation
Indices: 82031727--82031977 Score: 201
Period size: 68 Copynumber: 3.8 Consensus size: 65
82031717 ATAGTTCGGT
* *
82031727 TCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGC--CA-AT-TTATCTCGTA
1 TCTCTTGTACACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATT-TCTCGTA
82031788 GC
64 GC
* * * * *
82031790 TCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATA--TCCC
1 TCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATTTCTC
82031852 GTAGC
61 GTAGC
** * *
82031857 TCTCTTGTTTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATATTGTCTTGT
1 TCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-ATATT-TCTCGT
82031922 AGC
63 AGC
* * * ** *
82031925 TCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 TCTCTTGTACACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATA
82031978 CTATCTGTAT
Statistics
Matches: 148, Mismatches: 24, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
62 1 0.01
63 17 0.11
64 27 0.18
65 3 0.02
66 20 0.14
67 28 0.19
68 50 0.34
69 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.30
Consensus pattern (65 bp):
TCTCTTGTACACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATTTCTCGTAGC
Found at i:82033751 original size:15 final size:15
Alignment explanation
Indices: 82033731--82033761 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82033721 CAAATAGGGA
82033731 TTTTATTTGTTATTT
1 TTTTATTTGTTATTT
*
82033746 TTTTATTTTTTATTT
1 TTTTATTTGTTATTT
82033761 T
1 T
82033762 CTTTCCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (15 bp):
TTTTATTTGTTATTT
Found at i:82041023 original size:40 final size:40
Alignment explanation
Indices: 82040986--82041211 Score: 330
Period size: 40 Copynumber: 5.7 Consensus size: 40
82040976 GCTACTCGTT
* *
82040986 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82041026 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82041066 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82041106 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
82041146 CAAATGCCTTCGGGTCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
82041187 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82041212 CATCATTCAA
Statistics
Matches: 173, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 163 0.94
41 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82049108 original size:39 final size:40
Alignment explanation
Indices: 82048994--82049178 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
82048984 GCTACTCGTT
82048994 CAAATGCCTTCGGGACA-TAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCA
* *
82049034 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCA
* *
82049074 CCAATGCCTTC-GGAATTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCA
* * * * * *
82049113 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-ATTAGCCCGGATTTAGTAAC-TCGCA
*
82049154 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGAATTAGCCCGGA
82049179 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 38 0.30
40 74 0.59
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCA
Found at i:82049162 original size:79 final size:80
Alignment explanation
Indices: 82048994--82049178 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
82048984 GCTACTCGTT
*
82048994 CAAATGCCTTCGGGACA-TAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAA-GCCTTCGGGA-ATTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
* *
82049057 GGATTTAGTAACTCGCAC
63 GGATATAGTAACTAGCAC
* **
82049075 CAATGCCTTC-GGAATTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGAATTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
82049138 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
82049154 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGAATTAGCCCGGA
82049179 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.04
79 58 0.65
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGAATTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:82052898 original size:13 final size:13
Alignment explanation
Indices: 82052882--82052907 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82052872 AATTAAAATT
82052882 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
82052895 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
82052908 CCTTACCGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (13 bp):
TTGAAAAAAAAAA
Found at i:82053283 original size:13 final size:13
Alignment explanation
Indices: 82053261--82053312 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
82053251 TGTTTGACAA
*
82053261 ATTTCTTAAAAAT
1 ATTTCATAAAAAT
*
82053274 ATTTCATAAAAGTT
1 ATTTCATAAAA-AT
* *
82053288 GTTTTCTTAAAAAT
1 -ATTTCATAAAAAT
82053302 ATTTCATAAAA
1 ATTTCATAAAA
82053313 GTTGTTTTCA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
13 19 0.63
14 2 0.07
15 9 0.30
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (13 bp):
ATTTCATAAAAAT
Found at i:82053294 original size:28 final size:28
Alignment explanation
Indices: 82053262--82053321 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
82053252 GTTTGACAAA
82053262 TTTCTTAAAAATATTTCATAAAAGTTGT
1 TTTCTTAAAAATATTTCATAAAAGTTGT
82053290 TTTCTTAAAAATATTTCATAAAAGTTGT
1 TTTCTTAAAAATATTTCATAAAAGTTGT
82053318 TTTC
1 TTTC
82053322 AAGGAAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (28 bp):
TTTCTTAAAAATATTTCATAAAAGTTGT
Found at i:82053298 original size:15 final size:15
Alignment explanation
Indices: 82053275--82053322 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
82053265 CTTAAAAATA
82053275 TTTCATAAAAGTTGT
1 TTTCATAAAAGTTGT
* * *
82053290 TTTCTTAAAA-AT-A
1 TTTCATAAAAGTTGT
82053303 TTTCATAAAAGTTGT
1 TTTCATAAAAGTTGT
82053318 TTTCA
1 TTTCA
82053323 AGGAAACAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 9 0.36
14 2 0.08
15 14 0.56
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.48
Consensus pattern (15 bp):
TTTCATAAAAGTTGT
Found at i:82053758 original size:15 final size:14
Alignment explanation
Indices: 82053728--82053761 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
82053718 ACGTAAATAA
82053728 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
82053741 TATTATTTTAAAATT
1 TATTATTTTAAAA-T
82053756 TATTAT
1 TATTAT
82053762 CAAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 7 0.37
15 7 0.37
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:82053841 original size:38 final size:35
Alignment explanation
Indices: 82053777--82053892 Score: 116
Period size: 33 Copynumber: 3.3 Consensus size: 35
82053767 TAAAATTGAA
*
82053777 ATATTAAATAATTTATTAAAAT-AATAAATTATATTAATT
1 ATATT-AATAATTTATT-ATATGAATAAATTATA--AA-T
*
82053816 ATATTAATAGTTTATTATATGAATAAA-TATAAAT
1 ATATTAATAATTTATTATATGAATAAATTATAAAT
* *
82053850 A-ATTAATAATTTTTTATATGATTAAA-TATAAAT
1 ATATTAATAATTTATTATATGAATAAATTATAAAT
82053883 AT-TTAATAAT
1 ATATTAATAAT
82053893 ATAAATTAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
33 38 0.54
34 2 0.03
35 2 0.03
37 7 0.10
38 16 0.23
39 5 0.07
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (35 bp):
ATATTAATAATTTATTATATGAATAAATTATAAAT
Found at i:82058046 original size:37 final size:37
Alignment explanation
Indices: 82057996--82058074 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
82057986 TTATTACGAA
* * *
82057996 GTCTTACACGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACACGGACAAAATCCCCACACGAAGTCATCGG
* *
82058033 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACACGGACAAAATCCCCACACGAAGTCATCGG
82058070 GTCTT
1 GTCTT
82058075 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACACGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82058311 original size:37 final size:37
Alignment explanation
Indices: 82058261--82058339 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82058251 TTATTACGAA
* * *
82058261 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82058298 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82058335 GTCTT
1 GTCTT
82058340 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82058351 original size:265 final size:265
Alignment explanation
Indices: 82057878--82058407 Score: 1051
Period size: 265 Copynumber: 2.0 Consensus size: 265
82057868 GATTGCTCTC
82057878 GTATGCATCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACA
1 GTATGCATCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACA
82057943 TACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACACGGA
66 TACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACACGGA
82058008 CATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
131 CATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
82058073 TTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCA
196 TTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCA
82058138 TAAAG
261 TAAAG
82058143 GTATGCATCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACA
1 GTATGCATCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACA
*
82058208 TACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACCCGGA
66 TACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACACGGA
82058273 CATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
131 CATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
82058338 TTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCA
196 TTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCA
82058403 TAAAG
261 TAAAG
82058408 CCTGCGGGAT
Statistics
Matches: 264, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
265 264 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (265 bp):
GTATGCATCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACA
TACCTGTTTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACACGGA
CATAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
TTTAGAGCTCGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCA
TAAAG
Found at i:82063897 original size:38 final size:38
Alignment explanation
Indices: 82063853--82063956 Score: 131
Period size: 38 Copynumber: 2.7 Consensus size: 38
82063843 GGCTTAAAGA
* *
82063853 CCTGCAGGCTATATGCTAGAATTATATCCAGGTTAAAT
1 CCTGCAGGCTATGTGCTAGTATTATATCCAGGTTAAAT
* *
82063891 CTTGCAGGCT-TCGTGCTGGTATTATATCCAGGTTAAAT
1 CCTGCAGGCTAT-GTGCTAGTATTATATCCAGGTTAAAT
*
82063929 CCCGCAGGCCTA-GTGCTAGTATTATATC
1 CCTGCAGG-CTATGTGCTAGTATTATATC
82063957 TAACTTTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.02
38 53 0.95
39 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (38 bp):
CCTGCAGGCTATGTGCTAGTATTATATCCAGGTTAAAT
Found at i:82063985 original size:40 final size:38
Alignment explanation
Indices: 82063866--82063985 Score: 114
Period size: 38 Copynumber: 3.1 Consensus size: 38
82063856 GCAGGCTATA
* * * **
82063866 TGCTAGAATTATATCCAGGTTAAATCTTGCAGGCTTCG
1 TGCTAGTATTATATCAACGTTAAATCCCGCAGGCTTCG
* * * * *
82063904 TGCTGGTATTATATCCAGGTTAAATCCCGCAGGCCTAG
1 TGCTAGTATTATATCAACGTTAAATCCCGCAGGCTTCG
* *
82063942 TGCTAGTATTATATCTAACTTTAAAGTCCCGTAGGCTTCG
1 TGCTAGTATTATATC-AACGTTAAA-TCCCGCAGGCTTCG
82063982 TGCT
1 TGCT
82063986 GGTGTTATGT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 46 0.69
39 6 0.09
40 15 0.22
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (38 bp):
TGCTAGTATTATATCAACGTTAAATCCCGCAGGCTTCG
Found at i:82065270 original size:60 final size:60
Alignment explanation
Indices: 82065145--82065279 Score: 139
Period size: 60 Copynumber: 2.2 Consensus size: 60
82065135 GAGTTAACTG
* * * *
82065145 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATGAGAGTATACTG
1 GGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACGAGAGTATACTA
** * * *
82065206 GGCCTAGCCCATATCGGTATCAATTTGGGCCGTAGCCCTATTACAAGT-CGAGA-TATATTA
1 GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACGAGAGTATACTA
*
82065266 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
82065280 TAACACAGTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
60 47 0.76
61 12 0.19
62 3 0.05
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (60 bp):
GGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACGAGAGTATACTA
Found at i:82065325 original size:19 final size:19
Alignment explanation
Indices: 82065284--82065326 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
82065274 CCATATTAAC
* *
82065284 ACAGTTGGGCCCATTCAAT
1 ACAGTTGGGCCCATACAAA
82065303 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCAT-ACAAA
82065322 ACAGT
1 ACAGT
82065327 CTCATATGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (19 bp):
ACAGTTGGGCCCATACAAA
Found at i:82069385 original size:18 final size:18
Alignment explanation
Indices: 82069364--82069407 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
82069354 TGCTCCACCG
*
82069364 CCTAAACCTCCTGG-TCCA
1 CCTAAACCTCC-GGCCCCA
82069382 CCTAAACCTCCGGCCCCA
1 CCTAAACCTCCGGCCCCA
82069400 CCTAAACC
1 CCTAAACC
82069408 GCCGAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.25, C:0.50, G:0.09, T:0.16
Consensus pattern (18 bp):
CCTAAACCTCCGGCCCCA
Found at i:82072940 original size:20 final size:22
Alignment explanation
Indices: 82072912--82072957 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
82072902 TTTGGTAATA
*
82072912 ATAATAATA-ATA-ATATGCAC
1 ATAAAAATACATATATATGCAC
*
82072932 ATAAAAATACATATATATGCAT
1 ATAAAAATACATATATATGCAC
82072954 ATAA
1 ATAA
82072958 TAAAAGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 3 0.14
22 11 0.50
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (22 bp):
ATAAAAATACATATATATGCAC
Found at i:82073483 original size:12 final size:12
Alignment explanation
Indices: 82073447--82073488 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
82073437 ATGTATATAT
82073447 AAAGAAAGAAAA
1 AAAGAAAGAAAA
* *
82073459 AAACAACACAAAA
1 AAAGAA-AGAAAA
82073472 AAAGAAAGAAAA
1 AAAGAAAGAAAA
82073484 AAAGA
1 AAAGA
82073489 TTCGAAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.81, C:0.07, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAGAAAGAAAA
Found at i:82079715 original size:120 final size:120
Alignment explanation
Indices: 82079502--82079741 Score: 444
Period size: 120 Copynumber: 2.0 Consensus size: 120
82079492 AAAGGGATCT
* *
82079502 CAATTTTTCTCGTAACTTCTCGTCTTGTTCCATCGAATGCCCTTACTGTAGAATGGCAGGGCCTT
1 CAATTTTTCCCATAACTTCTCGTCTTGTTCCATCGAATGCCCTTACTGTAGAATGGCAGGGCCTT
82079567 AGATAGGACAAATCCATCAGAATCCTGGAAAGTGTGGCCAAAGGCATGACATTGA
66 AGATAGGACAAATCCATCAGAATCCTGGAAAGTGTGGCCAAAGGCATGACATTGA
82079622 CAATTTTTCCCATAACTTCTCGTCTTGTTCCATCGAATGCCCTTACTGTAGAATGGCAGGGCCTT
1 CAATTTTTCCCATAACTTCTCGTCTTGTTCCATCGAATGCCCTTACTGTAGAATGGCAGGGCCTT
* *
82079687 AGATAGGACAAATCCATCAGAATCCTGGAAAGTGTGGCTAAAGGTATGACATTGA
66 AGATAGGACAAATCCATCAGAATCCTGGAAAGTGTGGCCAAAGGCATGACATTGA
82079742 GTGTCGATCC
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 116 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (120 bp):
CAATTTTTCCCATAACTTCTCGTCTTGTTCCATCGAATGCCCTTACTGTAGAATGGCAGGGCCTT
AGATAGGACAAATCCATCAGAATCCTGGAAAGTGTGGCCAAAGGCATGACATTGA
Found at i:82084087 original size:19 final size:19
Alignment explanation
Indices: 82084065--82084151 Score: 61
Period size: 19 Copynumber: 4.3 Consensus size: 19
82084055 TAATAATAAT
82084065 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
82084084 ATAAAAATACATATATATATGTGC
1 AT-AAAAT--A-ATA-ATATGTAC
*
82084108 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
82084126 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
82084146 AATAAA
1 -ATAAA
82084152 TGAAATTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 19
0.69 0.06 0.25
Matches are distributed among these distances:
18 4 0.08
19 18 0.34
20 9 0.17
21 5 0.09
22 1 0.02
23 7 0.13
24 9 0.17
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:82084350 original size:104 final size:104
Alignment explanation
Indices: 82084235--82084450 Score: 414
Period size: 104 Copynumber: 2.1 Consensus size: 104
82084225 ATGTACAAAT
82084235 ATATATATGTACATAAAATATACACTAATGTAATAATAATTATAATAATACTAGCAATAGTAATA
1 ATATATATGTACATAAAATATACACTAATGTAATAATAATTATAATAATACTAGCAATAGTAATA
*
82084300 ATTAGTAATAATAATATATACACAATATGGTATTTTAAA
66 ATTAGTAATAATAATATATACACAATATGGCATTTTAAA
82084339 ATATATATGTACATAAAATATACACTAATGTAATAATAATTATAATAATACTAGCAATAGTAATA
1 ATATATATGTACATAAAATATACACTAATGTAATAATAATTATAATAATACTAGCAATAGTAATA
82084404 ATTAGTAATAATAATATATACACAATATGGCATTTTAAA
66 ATTAGTAATAATAATATATACACAATATGGCATTTTAAA
*
82084443 AAATATAT
1 ATATATAT
82084451 ATTTATATAT
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 110 1.00
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.35
Consensus pattern (104 bp):
ATATATATGTACATAAAATATACACTAATGTAATAATAATTATAATAATACTAGCAATAGTAATA
ATTAGTAATAATAATATATACACAATATGGCATTTTAAA
Found at i:82084572 original size:11 final size:11
Alignment explanation
Indices: 82084545--82084587 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
82084535 TTGCATTAAA
*
82084545 AAAATATATAC
1 AAAATATATAT
*
82084556 ATAATATATAT
1 AAAATATATAT
*
82084567 AAAATACATAT
1 AAAATATATAT
*
82084578 AATATATATA
1 AAAATATATA
82084588 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:82089655 original size:289 final size:289
Alignment explanation
Indices: 82089136--82089682 Score: 1076
Period size: 289 Copynumber: 1.9 Consensus size: 289
82089126 AGTCTTTAAG
82089136 ATATTTACATAAATTTTTTAGATAGAATTGTTGTTTTACTTTTATTCAAATTTATAATTAGTGTT
1 ATATTTACATAAATTTTTTAGATAGAATTGTTGTTTTACTTTTATTCAAATTTATAATTAGTGTT
82089201 TGAGGTAATCCATCCTCAATTACACTTTTAATTTAAACTATTCAGTTTAATAATTAATATCTTAT
66 TGAGGTAATCCATCCTCAATTACACTTTTAATTTAAACTATTCAGTTTAATAATTAATATCTTAT
82089266 TATTTAAAATAATTTCTTATTTAAAGTGAGATTAATTCAAGTATTAAACTACAAAACTCAAAAAG
131 TATTTAAAATAATTTCTTATTTAAAGTGAGATTAATTCAAGTATTAAACTACAAAACTCAAAAAG
*
82089331 AGATATTGATTTTATAGAGATAAAAAATATATAAAAATTGAAGAATAAAAAGTATATATTTATAA
196 AGATATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTATAA
82089396 TATGTTCAAGCATTATTTAAAAAAATATT
261 TATGTTCAAGCATTATTTAAAAAAATATT
*
82089425 ATATTTACATAAGTTTTTTAGATAGAATTGTTGTTTTACTTTTATTCAAATTTATAATTAGTGTT
1 ATATTTACATAAATTTTTTAGATAGAATTGTTGTTTTACTTTTATTCAAATTTATAATTAGTGTT
82089490 TGAGGTAATCCATCCTCAATTACACTTTTAATTTAAACTATTCAGTTTAATAATTAATATCTTAT
66 TGAGGTAATCCATCCTCAATTACACTTTTAATTTAAACTATTCAGTTTAATAATTAATATCTTAT
82089555 TATTTAAAATAATTTCTTATTTAAAGTGAGATTAATTCAAGTATTAAACTACAAAACTCAAAAAG
131 TATTTAAAATAATTTCTTATTTAAAGTGAGATTAATTCAAGTATTAAACTACAAAACTCAAAAAG
82089620 AGATATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTAT
196 AGATATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTAT
82089683 TATTGATTTT
Statistics
Matches: 256, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
289 256 1.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.41
Consensus pattern (289 bp):
ATATTTACATAAATTTTTTAGATAGAATTGTTGTTTTACTTTTATTCAAATTTATAATTAGTGTT
TGAGGTAATCCATCCTCAATTACACTTTTAATTTAAACTATTCAGTTTAATAATTAATATCTTAT
TATTTAAAATAATTTCTTATTTAAAGTGAGATTAATTCAAGTATTAAACTACAAAACTCAAAAAG
AGATATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTATAA
TATGTTCAAGCATTATTTAAAAAAATATT
Found at i:82089716 original size:60 final size:60
Alignment explanation
Indices: 82089623--82089742 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
82089613 CAAAAAGAGA
82089623 TATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTAT
1 TATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTAT
*
82089683 TATTGATTTTATAGAGATAAAAAATATATAAAAATTGAAGAATAAAAAGTATATATTTAT
1 TATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTAT
82089743 AATATGTTCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.53, C:0.01, G:0.10, T:0.36
Consensus pattern (60 bp):
TATTGATTTTATAGAGATAAAAAATATATAAAAATCGAAGAATAAAAAGTATATATTTAT
Found at i:82091553 original size:21 final size:21
Alignment explanation
Indices: 82091515--82091554 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82091505 TTTGAAAACA
* *
82091515 TTAATAATTATTTTATAAATT
1 TTAATAATTATGTAATAAATT
*
82091536 TTAATAGTTATGTAATAAA
1 TTAATAATTATGTAATAAA
82091555 AAGAAAACTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
TTAATAATTATGTAATAAATT
Found at i:82093223 original size:132 final size:132
Alignment explanation
Indices: 82092981--82093223 Score: 378
Period size: 132 Copynumber: 1.8 Consensus size: 132
82092971 TTGCCTCGCC
* * * *
82092981 TTAGAAAAGACGAATGAAATTCCAAAGGGATATTCGATTATTTTACGCAAACGAGAAATTGCAAC
1 TTAGAAAACACGAATGAAATTCCAAAGAGACATTCAATTATTTTACGCAAACGAGAAATTGCAAC
82093046 CCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCATTCGTTTTAAAAAGT
66 CCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCATTCGTTTTAAAAAGT
82093111 TT
131 TT
* * **
82093113 TTAGAAAACATGAATGAAATTCTAAAGAGACATTCAATTATTTTGGGCAAACGAGAAATTGCAAC
1 TTAGAAAACACGAATGAAATTCCAAAGAGACATTCAATTATTTTACGCAAACGAGAAATTGCAAC
* * * *
82093178 CCAGCACGATAGGGCACGATTCCCCGAATTGCTAAATATCGAACAT
66 CCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACAT
82093224 CGTCTCCGTT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 99 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (132 bp):
TTAGAAAACACGAATGAAATTCCAAAGAGACATTCAATTATTTTACGCAAACGAGAAATTGCAAC
CCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCATTCGTTTTAAAAAGT
TT
Found at i:82100311 original size:26 final size:26
Alignment explanation
Indices: 82100282--82100339 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
82100272 TTCTATATAT
*
82100282 ACACACTAAAAGAGGACCTAAAGGGG
1 ACACACTAAAAGAGGACCTAAAGGGA
82100308 ACACACTAAAAGAGGACCTAAAGGGA
1 ACACACTAAAAGAGGACCTAAAGGGA
82100334 ACACAC
1 ACACAC
82100340 AGACTAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.48, C:0.22, G:0.22, T:0.07
Consensus pattern (26 bp):
ACACACTAAAAGAGGACCTAAAGGGA
Found at i:82101321 original size:11 final size:11
Alignment explanation
Indices: 82101288--82101330 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
82101278 TAATTTAGTC
82101288 ATTTTTATTTT
1 ATTTTTATTTT
**
82101299 A-TTGCATTTT
1 ATTTTTATTTT
*
82101309 ATTTTTGTTTT
1 ATTTTTATTTT
82101320 ATTTTTATTTT
1 ATTTTTATTTT
82101331 TTAATTACTA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:82103084 original size:6 final size:6
Alignment explanation
Indices: 82103053--82103174 Score: 79
Period size: 6 Copynumber: 19.8 Consensus size: 6
82103043 TATTAGAGCT
* * * *
82103053 AGAATC AAAATA AGAATC AGAGTC AGAATC AGAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * * *
82103102 AGAATC AGAATT AGAATC ACAATT AG-GTGAC AGAATC AGGATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
82103151 AAGTAA-C AGAATC AGAATC AGAAT
1 -AG-AATC AGAATC AGAATC AGAAT
82103175 GTGAATACAA
Statistics
Matches: 88, Mismatches: 19, Indels: 18
0.70 0.15 0.14
Matches are distributed among these distances:
5 4 0.05
6 73 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:82103100 original size:19 final size:19
Alignment explanation
Indices: 82103076--82103146 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
82103066 GAATCAGAGT
82103076 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
*
82103095 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTGA
* * *
82103112 TTAGAATCACAATTAGGTGA
1 -CAGAATCAGAATCAGGTGA
*
82103132 CAGAATCAGGATCAG
1 CAGAATCAGAATCAG
82103147 TATCAAGTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
17 1 0.03
18 12 0.30
19 26 0.65
20 1 0.03
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:82103118 original size:37 final size:37
Alignment explanation
Indices: 82103065--82103151 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
82103055 AATCAAAATA
* *
82103065 AGAATCAGAGTCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCACAATCAGGTGACAGAATC
* *
82103102 AGAATCAGAATTAGAATCACAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCACAATCAGGTGACAGAATC
* *
82103139 AGGATCAGTATCA
1 AGAATCAGAATCA
82103152 AGTAACAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCACAATCAGGTGACAGAATC
Found at i:82103170 original size:19 final size:19
Alignment explanation
Indices: 82103076--82103170 Score: 50
Period size: 19 Copynumber: 4.7 Consensus size: 19
82103066 GAATCAGAGT
* *
82103076 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAAGTAA
82103095 CAGAATCAGAATC-AG-AA
1 CAGAATCAGAATCAAGTAA
* * * * *
82103112 TTAGAATCACAATTAGGTGA
1 -CAGAATCAGAATCAAGTAA
82103132 CAGAATCAGGATCAGTATCAAGTAA
1 CAGAATCA-G---A--ATCAAGTAA
82103157 CAGAATCAGAATCA
1 CAGAATCAGAATCA
82103171 GAATGTGAAT
Statistics
Matches: 55, Mismatches: 12, Indels: 18
0.65 0.14 0.21
Matches are distributed among these distances:
17 1 0.02
18 11 0.20
19 25 0.45
20 1 0.02
21 1 0.02
23 1 0.02
24 1 0.02
25 14 0.25
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAAGTAA
Found at i:82103388 original size:27 final size:26
Alignment explanation
Indices: 82103292--82103385 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 26
82103282 AGCATGGCTG
* *
82103292 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
82103318 CCAGATGCAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
82103345 CCAGAACAGGTATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
82103372 CCAGAACAGATATT
1 CCAGAACAGATATT
82103386 TGTAGAAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 12 0.20
27 47 0.80
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:82103607 original size:22 final size:21
Alignment explanation
Indices: 82103573--82103636 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
82103563 GCAAATTCGT
*
82103573 TTGGCACACAGCCATAATCAGG
1 TTGGCA-AAAGCCATAATCAGG
*
82103595 TTGGCAAAGAGCCAT-ATGTAGG
1 TTGGCAAA-AGCCATAAT-CAGG
*
82103617 TTGGCGCAAAGCCATAATCA
1 TTGGC-AAAAGCCATAATCA
82103637 AAATAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 3 0.09
22 27 0.79
23 4 0.12
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCAAAAGCCATAATCAGG
Found at i:82104052 original size:27 final size:27
Alignment explanation
Indices: 82104022--82104507 Score: 596
Period size: 27 Copynumber: 18.0 Consensus size: 27
82104012 GGGGTAAAAT
* * * *
82104022 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82104049 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
82104076 ACTATTTCTACCCTACAAGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82104102 TGGTAATTATACCTTACAGGGGTATTTT
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
82104130 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82104157 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
82104184 AATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82104211 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82104238 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
82104265 GATAATTTTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82104292 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
82104319 GATAATTTTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82104346 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
82104373 AATAATTATACCGTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82104400 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82104427 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82104454 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
82104481 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82104508 AATCATTTTG
Statistics
Matches: 395, Mismatches: 62, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.01
27 390 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:82104179 original size:108 final size:108
Alignment explanation
Indices: 82104022--82104508 Score: 672
Period size: 108 Copynumber: 4.5 Consensus size: 108
82104012 GGGGTAAAAT
* * * * * *
82104022 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCACTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* *
82104087 CCTACAAGGGTA-TTCTGGTAATTATACCTTACAGGGGTATTTT
66 CCTACAAGGGTATTTC-GGTAATTCTACCTTACAGGGGTATTTC
* * * * *
82104130 AGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
82104195 CCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
66 CCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
* * * *
82104238 GGTAATTCTACCCTACAAGGGTATTTC-GATAATTTTACCTTATAGGGGTATTTCGGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
* * *
82104302 CCCTACAAGGGTATTTCGATAATTTTACCTTATAGGGGTATTTC
65 CCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
* * *
82104346 GGTAATTCTACCCTACAAGGGTATTTCAATAATTATACCGTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* * * *
82104411 CTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
66 CCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
* * *
82104454 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCA
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
82104509 ATCATTTTGT
Statistics
Matches: 338, Mismatches: 38, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
107 1 0.00
108 334 0.99
109 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (108 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
Found at i:82106605 original size:6 final size:6
Alignment explanation
Indices: 82106584--82106693 Score: 71
Period size: 6 Copynumber: 17.8 Consensus size: 6
82106574 TATTAGAACT
* * ** *
82106584 AGAATC AAAATG AGAATC AGAATC AGGTTAC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAAT-C AGAATC AGAATC AGAATC
* * * **
82106633 AGAATC AGAATT AGGTGAT- AGAAAC AGAATC AGTTTC AAGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC -AG-AATC AGAATC
82106683 AGAATC AGAAT
1 AGAATC AGAAT
82106694 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
5 3 0.04
6 64 0.82
7 9 0.12
8 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:82106620 original size:19 final size:18
Alignment explanation
Indices: 82106596--82106684 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
82106586 AATCAAAATG
82106596 AGAATCAGAATCAGGTTA
1 AGAATCAGAATCAGGTTA
*
82106614 CAGAATCAGAATCAGAATT-
1 -AGAATCAGAATCAG-GTTA
* *
82106633 AGAATCAGAATTAGGTGA
1 AGAATCAGAATCAGGTTA
* *
82106651 TAGAAACAGAATCAGTTTCA
1 -AGAATCAGAATCAGGTT-A
82106671 AGTAA-CAGAATCAG
1 AG-AATCAGAATCAG
82106685 AATCAGAATG
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
17 1 0.02
18 13 0.23
19 38 0.67
20 5 0.09
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.21
Consensus pattern (18 bp):
AGAATCAGAATCAGGTTA
Found at i:82106631 original size:31 final size:31
Alignment explanation
Indices: 82106584--82106693 Score: 89
Period size: 31 Copynumber: 3.5 Consensus size: 31
82106574 TATTAGAACT
* *
82106584 AGAATCAAAATGAGAATCAGAATCAGGTTAC
1 AGAATCAGAATCAGAATCAGAATCAGGTTAC
* *
82106615 AGAATCAGAATCAGAATTAGAATCAGAATTA-
1 AGAATCAGAATCAGAATCAGAATCAG-GTTAC
* * * ** * *
82106646 GGTGAT-AGAAACAGAATCAGTTTCAAGTAAC
1 AG-AATCAGAATCAGAATCAGAATCAGGTTAC
82106677 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
82106694 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
30 4 0.07
31 50 0.85
32 5 0.08
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTTAC
Found at i:82106637 original size:37 final size:37
Alignment explanation
Indices: 82106584--82106665 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
82106574 TATTAGAACT
* * *
82106584 AGAATCAAAATGAGAATCAGAATCAGGTTACAGAATC
1 AGAATCAGAATGAGAATCAGAATCAGGTGACAGAAAC
* * *
82106621 AGAATCAGAATTAGAATCAGAATTAGGTGATAGAAAC
1 AGAATCAGAATGAGAATCAGAATCAGGTGACAGAAAC
82106658 AGAATCAG
1 AGAATCAG
82106666 TTTCAAGTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATGAGAATCAGAATCAGGTGACAGAAAC
Found at i:82106849 original size:27 final size:26
Alignment explanation
Indices: 82106811--82106945 Score: 126
Period size: 27 Copynumber: 5.0 Consensus size: 26
82106801 AGCATGGCTC
* * * *
82106811 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCACAGCCA
82106837 CCAGATACAGATATTGTGGCACAGCCA
1 CCAGA-ACAGATATTGTGGCACAGCCA
* *
82106864 CCAGAACAGGTATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCACAGCCA
** *
82106891 CCAGAACAGATATTTGTGTTATAGCCA
1 CCAGAACAGATA-TTGTGGCACAGCCA
* * *
82106918 CCAGAAATAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCACAGCCA
82106945 C
1 C
82106946 TTAATAGAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
26 11 0.12
27 74 0.80
28 7 0.08
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCACAGCCA
Found at i:82106936 original size:54 final size:53
Alignment explanation
Indices: 82106811--82106945 Score: 146
Period size: 54 Copynumber: 2.5 Consensus size: 53
82106801 AGCATGGCTC
* * *
82106811 CCAGAATAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCACAGCCA
1 CCAGAATAGATATTGTGGCAAAGCCACCAGATACAGATATTGTGGCACAGCCA
* * * ** *
82106864 CCAGAACAGGTATTTGTGGCATAGCCACCAGA-ACAGATATTTGTGTTATAGCCA
1 CCAGAATAGATA-TTGTGGCAAAGCCACCAGATACAGATA-TTGTGGCACAGCCA
*
82106918 CCAGAAATAGATAATGTGGCAAAGCCAC
1 CCAG-AATAGATATTGTGGCAAAGCCAC
82106946 TTAATAGAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
53 17 0.25
54 44 0.66
55 6 0.09
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (53 bp):
CCAGAATAGATATTGTGGCAAAGCCACCAGATACAGATATTGTGGCACAGCCA
Found at i:82107140 original size:22 final size:23
Alignment explanation
Indices: 82107115--82107166 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
82107105 TGGCACACAA
*
82107115 CCATAATCT-GGTTGG-GACAGAG
1 CCATAATCTAGGTTGGCG-CAAAG
*
82107137 CCAT-ATGTAGGTTGGCGCAAAG
1 CCATAATCTAGGTTGGCGCAAAG
82107159 CCATAATC
1 CCATAATC
82107167 AGAATAATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (23 bp):
CCATAATCTAGGTTGGCGCAAAG
Found at i:82108017 original size:27 final size:27
Alignment explanation
Indices: 82107557--82108015 Score: 537
Period size: 27 Copynumber: 17.0 Consensus size: 27
82107547 GGGCAAAATG
* * * * *
82107557 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82107584 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82107611 GTATTTCTACCCTACAAGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-A
* *
82107638 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
82107665 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82107692 GTAGTTCTACCCTACACGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82107719 GTAGTTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82107746 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82107773 GTAATTCTACCTTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82107799 GATAATTCTACCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * * *
82107827 GTAATTTTACCTTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82107854 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82107881 ATAATTATACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82107908 GTAATTCTATCATACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
82107935 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
82107961 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
82107989 ATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
82108016 ATTATTTTGT
Statistics
Matches: 379, Mismatches: 47, Indels: 12
0.87 0.11 0.03
Matches are distributed among these distances:
26 5 0.01
27 371 0.98
28 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:82112581 original size:40 final size:40
Alignment explanation
Indices: 82112526--82112605 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
82112516 TTACGGTACT
82112526 TAGCATTTTTCCATTTGGTACAGTCGAGGTAAGTCATCCC
1 TAGCATTTTTCCATTTGGTACAGTCGAGGTAAGTCATCCC
*
82112566 TAGCATTTTTCCATTTGGTATAGTCGAGGTAAGTCATCCC
1 TAGCATTTTTCCATTTGGTACAGTCGAGGTAAGTCATCCC
82112606 AAGTTCGGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (40 bp):
TAGCATTTTTCCATTTGGTACAGTCGAGGTAAGTCATCCC
Found at i:82113066 original size:55 final size:55
Alignment explanation
Indices: 82113006--82113113 Score: 128
Period size: 55 Copynumber: 2.0 Consensus size: 55
82112996 CGGGTGTGTG
**
82113006 ACACGCCCGTGCCTTGA-AACCATGGGCAAAACTGTCAAATTAACACGAGCGTGCA
1 ACACGCCCGTGCC-AAACAACCATGGGCAAAACTGTCAAATTAACACGAGCGTGCA
* * * * * *
82113061 ACACGCTCGTGCCAAACAACCATGGTCGAACCTGTTAGATTAACACGAGCGTG
1 ACACGCCCGTGCCAAACAACCATGGGCAAAACTGTCAAATTAACACGAGCGTG
82113114 GGAGAAGCGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 43 0.98
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (55 bp):
ACACGCCCGTGCCAAACAACCATGGGCAAAACTGTCAAATTAACACGAGCGTGCA
Found at i:82116849 original size:27 final size:27
Alignment explanation
Indices: 82116819--82116996 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
82116809 ATATTGAGTC
* * * *
82116819 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
82116846 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82116873 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
82116901 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
82116928 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
82116955 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82116982 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82116997 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:82116958 original size:82 final size:81
Alignment explanation
Indices: 82116840--82116995 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
82116830 TGCTATATAA
*
82116840 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82116905 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
82116922 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82116986 CACTTAGTGC
65 CACTTAGTGC
82116996 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82126412 original size:6 final size:6
Alignment explanation
Indices: 82126403--82126482 Score: 117
Period size: 6 Copynumber: 13.2 Consensus size: 6
82126393 ATCTTTATGC
*
82126403 TTATTT TTATTT TTATTT TTATTT TTATCT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
82126451 TTATTT TTATGT TTATTT TGT-TTT TATATTT T
1 TTATTT TTATTT TTATTT T-TATTT T-TATTT T
82126483 GAACTTTATT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
6 62 0.93
7 5 0.07
ACGTcount: A:0.16, C:0.01, G:0.03, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:82154102 original size:38 final size:38
Alignment explanation
Indices: 82154059--82154316 Score: 313
Period size: 38 Copynumber: 6.8 Consensus size: 38
82154049 AAAGGCCCAA
* *
82154059 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCAGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGG
82154097 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAA-CCAGG
* * * * *
82154135 ATATATTATCAGCACAAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGG
** *
82154173 ATATAATACCAGTGCGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGG
* * *
82154211 ATATAATACCATCACAAAGCCTGTGGGATTTAACCCA-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAA-CCAGG
* * * **
82154249 ACATATTACCAGCACGAAGCCTGCAGGATTTAACCCTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGG
*
82154287 ATATATTACCAGCACGAAGCCTGCGGGATT
1 ATATAATACCAGCACGAAGCCTGCGGGATT
82154317 CATACACAAC
Statistics
Matches: 188, Mismatches: 28, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
37 4 0.02
38 179 0.95
39 5 0.03
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGG
Done.