Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 249 of 310
Found at i:82154164 original size:76 final size:76
Alignment explanation
Indices: 82154054--82154316 Score: 348
Period size: 76 Copynumber: 3.5 Consensus size: 76
82154044 GGCTCAAAGG
* * *
82154054 CCCAAATATAATACCAGCACTAGGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCCT
1 CCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCCT
82154119 GCGGGATTTAA
66 GCGGGATTTAA
* * * * **
82154130 CCCAGATATATTATCAGCACAAAGCCTGTGGGATTTAACCCGGATATAATACCAGTGCGAAGCCT
1 CCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCCT
82154195 GCGGGATTTAA
66 GCGGGATTTAA
* * * * *
82154206 CCCGGATATAATACCATCACAAAGCCTGTGGGATTTAACCCA-GACATATTACCAGCACGAAGCC
1 CCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA-CCAGGATATAATACCAGCACGAAGCC
*
82154270 TGCAGGATTTAA
65 TGCGGGATTTAA
* * *
82154282 CCCTGATATATTACCAGCACGAAGCCTGCGGGATT
1 CCCAGATATAATACCAGCACAAAGCCTGCGGGATT
82154317 CATACACAAC
Statistics
Matches: 162, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
76 160 0.99
77 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCCT
GCGGGATTTAA
Found at i:82154262 original size:114 final size:114
Alignment explanation
Indices: 82154059--82154316 Score: 381
Period size: 114 Copynumber: 2.3 Consensus size: 114
82154049 AAAGGCCCAA
* * *
82154059 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACAAAGCCTGCGGG
* * **
82154124 ATTTAACCCAGATATATTATCAGCACAAAGCCTGTGGGATTTAACCCGG
66 ATTTAACCCAGACATATTACCAGCACAAAGCCTGCAGGATTTAACCCGG
** * * *
82154173 ATATAATACCAGTGCGAAGCCTGCGGGATTTAACCCGGATATAATACCATCACAAAGCCTGTGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACAAAGCCTGCGGG
* *
82154238 ATTTAACCCAGACATATTACCAGCACGAAGCCTGCAGGATTTAACCCTG
66 ATTTAACCCAGACATATTACCAGCACAAAGCCTGCAGGATTTAACCCGG
*
82154287 ATATATTACCAGCACGAAGCCTGCGGGATT
1 ATATAATACCAGCACGAAGCCTGCGGGATT
82154317 CATACACAAC
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 127 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (114 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACAAAGCCTGCGGG
ATTTAACCCAGACATATTACCAGCACAAAGCCTGCAGGATTTAACCCGG
Found at i:82159310 original size:38 final size:38
Alignment explanation
Indices: 82159259--82159491 Score: 331
Period size: 38 Copynumber: 6.1 Consensus size: 38
82159249 AAAGGCCCAA
* * *
82159259 ATATAATACCAGCACTAGGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
82159297 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
82159335 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * * * *
82159373 ACATATTACCAGCATGAAGCCTGCGAGATTTAATCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
82159411 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
82159449 ATATAATACCAGCACAAAGCCTGCAGGATTTAACTCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
82159487 ATATA
1 ATATA
82159492 CATCAAATAT
Statistics
Matches: 173, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 173 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:82162467 original size:16 final size:16
Alignment explanation
Indices: 82162446--82162495 Score: 91
Period size: 16 Copynumber: 3.1 Consensus size: 16
82162436 GTCAAGTGGT
*
82162446 TTTGGAAAATGAGGTA
1 TTTGGAAAATAAGGTA
82162462 TTTGGAAAATAAGGTA
1 TTTGGAAAATAAGGTA
82162478 TTTGGAAAATAAGGTA
1 TTTGGAAAATAAGGTA
82162494 TT
1 TT
82162496 GGGACCTCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (16 bp):
TTTGGAAAATAAGGTA
Found at i:82163678 original size:6 final size:6
Alignment explanation
Indices: 82163657--82163796 Score: 115
Period size: 6 Copynumber: 22.8 Consensus size: 6
82163647 TATTAGAACT
* * *
82163657 AGAATC AAAATG AGAATC AGAATC -GAAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAAT--C AGAATC AGAATC
* *
82163706 AGAATC AGAATC AGAATC AGAACC AGAATC AGAATC AGGTAA-C AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * *
82163755 AGAATC ATAATC AGTATC AGGTACC AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAATC A-GAATC AGAATC AGAATC AGAAT
82163797 GTGAATGCAA
Statistics
Matches: 107, Mismatches: 18, Indels: 18
0.75 0.13 0.13
Matches are distributed among these distances:
5 4 0.04
6 88 0.82
7 12 0.11
8 3 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:82163707 original size:31 final size:30
Alignment explanation
Indices: 82163669--82163796 Score: 126
Period size: 31 Copynumber: 4.4 Consensus size: 30
82163659 AATCAAAATG
82163669 AGAATCAGAATC-GAAATCAGGTGACAGAATC
1 AGAATCAGAATCAG-AATCAGGT-ACAGAATC
82163700 AGAATCAGAATCAG-A--A--T-CAGAATC
1 AGAATCAGAATCAGAATCAGGTACAGAATC
* *
82163724 AGAACCAGAATCAGAATCAGGTAACAGAATT
1 AGAATCAGAATCAGAATCAGGT-ACAGAATC
* *
82163755 AGAATCATAATCAGTATCAGGTACCAGAATC
1 AGAATCAGAATCAGAATCAGGTA-CAGAATC
*
82163786 AAAATCAGAAT
1 AGAATCAGAAT
82163797 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
24 20 0.25
25 1 0.01
26 1 0.01
27 1 0.01
28 1 0.01
29 1 0.01
30 2 0.03
31 52 0.65
32 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGGTACAGAATC
Found at i:82163742 original size:55 final size:55
Alignment explanation
Indices: 82163657--82163774 Score: 157
Period size: 55 Copynumber: 2.1 Consensus size: 55
82163647 TATTAGAACT
* * * *
82163657 AGAATCAAAATGAGAATCAGAATCGAAATCAGGTGACAGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAACCAGAATCGAAATCAGGTAACAGAATCAGAATCAGAATC
* *
82163712 AGAATCAGAATCAGAACCAGAATC-AGAATCAGGTAACAGAATTAGAATCATAATC
1 AGAATCAGAATCAGAACCAGAATCGA-AATCAGGTAACAGAATCAGAATCAGAATC
*
82163767 AGTATCAG
1 AGAATCAG
82163775 GTACCAGAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 1 0.02
55 54 0.98
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (55 bp):
AGAATCAGAATCAGAACCAGAATCGAAATCAGGTAACAGAATCAGAATCAGAATC
Found at i:82163959 original size:27 final size:26
Alignment explanation
Indices: 82163911--82163970 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
82163901 GCAAGGCTGC
*
82163911 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
82163938 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
82163964 TAGATAT
1 CAGATAT
82163971 ATATATATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:82164327 original size:27 final size:27
Alignment explanation
Indices: 82164297--82164757 Score: 581
Period size: 27 Copynumber: 17.2 Consensus size: 27
82164287 AACACCCTAG
* *
82164297 GGGTAAAATGGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
82164324 GGGTAAAACAATAATTTTGTAAATCGG
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
82164351 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
82164378 -GGTAAAACATTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
82164404 GGGTAAAATGGTAATTTTGTCAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
82164431 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
82164458 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
82164485 GGGTAAAA-CGATAATTCTATAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
* *
82164512 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
82164539 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
82164566 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
82164593 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
82164620 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** *
82164647 GGGTAAAACGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
82164674 GGGTAAAA-AGGTAATTTTGTAAATCGA
1 GGGTAAAATA-GTAATTTTGTAAATCGA
*
82164701 GGG--AAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
82164726 GGGTAAAATAGTAATTTTATAATTCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
82164753 GGGTA
1 GGGTA
82164758 CTTTAATAAT
Statistics
Matches: 386, Mismatches: 41, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
25 22 0.06
26 26 0.07
27 337 0.87
28 1 0.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:82164767 original size:27 final size:27
Alignment explanation
Indices: 82164737--82164797 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
82164727 GGTAAAATAG
* *
82164737 TAATTTTATAATTCGAGGGTACTTTAA
1 TAATTTTACAAGTCGAGGGTACTTTAA
* *
82164764 TAATTTTACAAGTCGAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGTACTTTAA
82164791 TAATTTT
1 TAATTTT
82164798 GCAAACTTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTACTTTAA
Found at i:82164810 original size:54 final size:53
Alignment explanation
Indices: 82164752--82164903 Score: 146
Period size: 54 Copynumber: 2.8 Consensus size: 53
82164742 TTATAATTCG
** * * *
82164752 AGGGTACTTTAATAATTTTACAAGTCGAGGGTATTTTAGTAATTTTGCAAACTT
1 AGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAC-T
* * ** *
82164806 AGGGTA-TTTCGGTAATTTTACAAATCGATGATATTTGGGTAATTTTATAAACT
1 AGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACT
* * *
82164859 GGAGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 AG-GGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
82164904 GGTAAACTAA
Statistics
Matches: 79, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
53 19 0.24
54 57 0.72
55 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACT
Found at i:82164900 original size:26 final size:26
Alignment explanation
Indices: 82164764--82164903 Score: 104
Period size: 27 Copynumber: 5.2 Consensus size: 26
82164754 GGTACTTTAA
* **
82164764 TAATTTTACAAGTCGAGGGTATTTTAG
1 TAATTTTACAACT-GAGGGTATTTCGG
* *
82164791 TAATTTTGCAAACTTAGGGTATTTCGG
1 TAATTTTAC-AACTGAGGGTATTTCGG
* * * *
82164818 TAATTTTACAAATCGATGATATTTGGG
1 TAATTTTACAACT-GAGGGTATTTCGG
*
82164845 TAATTTTATAAACTG-GAGGTACTTT-GG
1 TAATTTTA-CAACTGAG-GGTA-TTTCGG
* *
82164872 TAATTTTACAACTGGGGGTATTTCAG
1 TAATTTTACAACTGAGGGTATTTCGG
82164898 TAATTT
1 TAATTT
82164904 GGTAAACTAA
Statistics
Matches: 89, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
25 3 0.03
26 19 0.21
27 58 0.65
28 9 0.10
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
TAATTTTACAACTGAGGGTATTTCGG
Found at i:82172036 original size:41 final size:41
Alignment explanation
Indices: 82171979--82172061 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
82171969 CAATGGATGC
*
82171979 ATAAAAAGTGATTAGAAAAGA-TGATGATGCGTTTTTAGCTT
1 ATAAAAAGTGATTAGAAAAGATTG-TGATGCATTTTTAGCTT
82172020 ATAAAAAGTGATTAGAAAAGATTGTGATGCATTTTTAGCTT
1 ATAAAAAGTGATTAGAAAAGATTGTGATGCATTTTTAGCTT
82172061 A
1 A
82172062 CATTCTGGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 38 0.95
42 2 0.05
ACGTcount: A:0.40, C:0.05, G:0.20, T:0.35
Consensus pattern (41 bp):
ATAAAAAGTGATTAGAAAAGATTGTGATGCATTTTTAGCTT
Found at i:82174779 original size:33 final size:34
Alignment explanation
Indices: 82174736--82174807 Score: 128
Period size: 33 Copynumber: 2.1 Consensus size: 34
82174726 AAGTTCTAGA
*
82174736 CTAAGACTCGAAACGTAAAATGACAATTAAAAAC
1 CTAAGACTCGAAACGTAAAATGAAAATTAAAAAC
82174770 CTAAG-CTCGAAACGTAAAATGAAAATTAAAAAC
1 CTAAGACTCGAAACGTAAAATGAAAATTAAAAAC
82174803 CTAAG
1 CTAAG
82174808 GCGAAGCCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 32 0.86
34 5 0.14
ACGTcount: A:0.53, C:0.17, G:0.12, T:0.18
Consensus pattern (34 bp):
CTAAGACTCGAAACGTAAAATGAAAATTAAAAAC
Found at i:82176036 original size:21 final size:20
Alignment explanation
Indices: 82176010--82176081 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 20
82176000 ATCTTTCAGC
82176010 CATGATCTTACTCGTCTTTAT
1 CATGATCTTACTC-TCTTTAT
* *
82176031 CATGATGCCATAGCATCT-TTTAG
1 CATGAT--CTTA-C-TCTCTTTAT
82176054 CAATGATCTTACTCATCTTTAT
1 C-ATGATCTTACTC-TCTTTAT
82176076 CATGAT
1 CATGAT
82176082 GCCATAGCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
20 2 0.05
21 13 0.32
22 8 0.20
23 8 0.20
24 7 0.17
25 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (20 bp):
CATGATCTTACTCTCTTTAT
Found at i:82176047 original size:45 final size:45
Alignment explanation
Indices: 82175986--82176118 Score: 196
Period size: 45 Copynumber: 3.0 Consensus size: 45
82175976 GTCCCATTAC
* * * *
82175986 CATGATGTCATGGCATCTTTCAGCCATGATCTTACTCGTCTTTAT
1 CATGATGCCATAGCATCTTTCAGCAATGATCTTACTCATCTTTAT
*
82176031 CATGATGCCATAGCATCTTTTAGCAATGATCTTACTCATCTTTAT
1 CATGATGCCATAGCATCTTTCAGCAATGATCTTACTCATCTTTAT
* *
82176076 CATGATGCCATAGCATCTTTCAGCTATGTTCTTACTCAT-TTTA
1 CATGATGCCATAGCATCTTTCAGCAATGATCTTACTCATCTTTA
82176119 AGCGTATAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 4 0.05
45 76 0.95
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (45 bp):
CATGATGCCATAGCATCTTTCAGCAATGATCTTACTCATCTTTAT
Found at i:82176092 original size:22 final size:22
Alignment explanation
Indices: 82176024--82176095 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 22
82176014 ATCTTACTCG
82176024 TCTTTATCATGATGCCATAGCA
1 TCTTTATCATGATGCCATAGCA
* * *
82176046 TCTTTTAGCAATGAT--CTTACTCA
1 TC-TTTATC-ATGATGCCATA-GCA
82176069 TCTTTATCATGATGCCATAGCA
1 TCTTTATCATGATGCCATAGCA
82176091 TCTTT
1 TCTTT
82176096 CAGCTATGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
21 5 0.13
22 17 0.44
23 12 0.31
24 5 0.13
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (22 bp):
TCTTTATCATGATGCCATAGCA
Found at i:82190747 original size:71 final size:67
Alignment explanation
Indices: 82190607--82190747 Score: 158
Period size: 67 Copynumber: 2.0 Consensus size: 67
82190597 AGGAATTGTC
* * * * *
82190607 CTGGCATCCTCACTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCATCACAAT
1 CTGGCAGCCTCACTGCAATATGGTGGCCTCGCCACATATATCTATTCTGGTGACCTCACCACAAT
82190672 AT
66 AT
* * *
82190674 CTGGCAGCCTCCCTGCAATATGGTGGCTTCGCCACATATATATATCTATTCTGGTGGCCT-AGCC
1 CTGGCAGCCTCACTGCAATATGGTGGCCTCGCCAC----ATATATCTATTCTGGTGACCTCA-CC
82190738 ACAATAT
61 ACAATAT
82190745 CTG
1 CTG
82190748 TATCTGGTGA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
67 31 0.51
70 1 0.02
71 29 0.48
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.30
Consensus pattern (67 bp):
CTGGCAGCCTCACTGCAATATGGTGGCCTCGCCACATATATCTATTCTGGTGACCTCACCACAAT
AT
Found at i:82199355 original size:36 final size:36
Alignment explanation
Indices: 82199301--82199369 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
82199291 AGATAGCATA
82199301 GTAACCGCATCGAAGTTGAAAACACTGGCTGCTTTT
1 GTAACCGCATCGAAGTTGAAAACACTGGCTGCTTTT
* * *
82199337 GTAATCGCATCGAGGTTGAAAACATTGGCTGCT
1 GTAACCGCATCGAAGTTGAAAACACTGGCTGCT
82199370 ATCATCGGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (36 bp):
GTAACCGCATCGAAGTTGAAAACACTGGCTGCTTTT
Found at i:82202338 original size:40 final size:38
Alignment explanation
Indices: 82202305--82202398 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 38
82202295 TATATTCAGA
82202305 ACTAAGTGTGCGATTTGAAATAACTTCGGCTATAAATAGC
1 ACTAAGTGTGCGATTTGAAATAACTTCGGCTAT--ATAGC
* * * *
82202345 ACTAAGTGTGCGAATTGGAATAGCTTTGGCTATATGAGGC
1 ACTAAGTGTGCGATTTGAAATAACTTCGGCTATAT-A-GC
82202385 ACTAAGTGTGCGAT
1 ACTAAGTGTGCGAT
82202399 ACTGAGATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 44 0.94
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (38 bp):
ACTAAGTGTGCGATTTGAAATAACTTCGGCTATATAGC
Found at i:82207240 original size:27 final size:27
Alignment explanation
Indices: 82207205--82207271 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
82207195 AGCATGGCTG
*
82207205 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGACAGAGCCA
*
82207231 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGACAGAGCCA
82207259 CCAGAACAGATAA
1 CCAGAACAGATAA
82207272 CACCAGATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 5 0.14
27 16 0.43
28 16 0.43
ACGTcount: A:0.42, C:0.21, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGACAGAGCCA
Found at i:82207444 original size:26 final size:27
Alignment explanation
Indices: 82207408--82207471 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
82207398 CAAAAGTAAC
** *
82207408 CCTAGGGGTATAATGGTAATTT-TATA
1 CCTAGGGGTATAACAGTAATTTCCATA
82207434 CCTAGGGGTATAACAGTAATTTCCATA
1 CCTAGGGGTATAACAGTAATTTCCATA
*
82207461 CATAGGGGTAT
1 CCTAGGGGTAT
82207472 TCAAGTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTCCATA
Found at i:82207741 original size:16 final size:15
Alignment explanation
Indices: 82207720--82207750 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82207710 CAAAATATCA
82207720 GCTTTTCGGCATTTTG
1 GCTTTTCGGC-TTTTG
82207736 GCTTTTCGGCTTTTG
1 GCTTTTCGGCTTTTG
82207751 CCGATCTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.19, G:0.26, T:0.52
Consensus pattern (15 bp):
GCTTTTCGGCTTTTG
Found at i:82211045 original size:18 final size:18
Alignment explanation
Indices: 82211024--82211058 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82211014 AAATAGTAAG
* *
82211024 CTTTCAATTGGCAGTATA
1 CTTTCAAATGGAAGTATA
82211042 CTTTCAAATGGAAGTAT
1 CTTTCAAATGGAAGTAT
82211059 GCTTATGTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (18 bp):
CTTTCAAATGGAAGTATA
Found at i:82213425 original size:21 final size:21
Alignment explanation
Indices: 82213401--82213453 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
82213391 GTTTTTGATA
* *
82213401 AGGAAGTTGCTACTGCAGGAG
1 AGGAAGTTGCTACTGAAGAAG
* *
82213422 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTGCTACTGAAGAAG
*
82213443 AAGAAGTTGCT
1 AGGAAGTTGCT
82213454 GAAAATAAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.09, G:0.36, T:0.23
Consensus pattern (21 bp):
AGGAAGTTGCTACTGAAGAAG
Found at i:82216691 original size:47 final size:47
Alignment explanation
Indices: 82216613--82216909 Score: 431
Period size: 47 Copynumber: 6.3 Consensus size: 47
82216603 TCCTTCGGGA
* * *
82216613 CTTATCACAGT-TATACACTTCCAC-TTCCATCACATTGACCATTCGGT
1 CTTATCACA-TATATACACTTTCACATT-CATCACATTGGCCATTCGGC
* *
82216660 CTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
82216707 CTTATCACATACT-TACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTCGGC
82216754 CTTATCACATACT-TACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
82216801 CTTATCACATATACATACACCTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
82216850 CTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
82216897 CTTATCACATATA
1 CTTATCACATATA
82216910 CATATCTTGT
Statistics
Matches: 230, Mismatches: 14, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 182 0.79
48 3 0.01
49 43 0.19
ACGTcount: A:0.27, C:0.29, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:82216713 original size:22 final size:22
Alignment explanation
Indices: 82216688--82216810 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
82216678 TTTCACATTC
82216688 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
82216710 ATCACATACTTACACTTTC-ACATT
1 ATCACAT--TGGC-CATTCGGCCTT
82216734 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * * *
82216757 ATCACATACTTACACTTTC-ACATT
1 ATCACAT--TGGC-CATTCGGCCTT
82216781 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82216804 ATCACAT
1 ATCACAT
82216811 ATACATACAC
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 29 0.41
23 10 0.14
24 10 0.14
25 22 0.31
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82216870 original size:96 final size:96
Alignment explanation
Indices: 82216640--82216913 Score: 455
Period size: 96 Copynumber: 2.9 Consensus size: 96
82216630 CTTCCACTTC
* *
82216640 CATCACATTGACCATTCGGTCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
* *
82216705 GCCTTATCAC--ATACTTACACTTTCACATT
66 GCCTTATCACATATACATACACCTTCACATT
* *
82216734 CATCACATTGGCCATTCGGCCTTATCACATACT-TACACTTTCACATTCATCACATTGGCCATTC
1 CATCACATTGGCCATTCGGCCTTATCATATA-TATATACTTTCACATTCATCACATTGGCCATTC
82216798 GGCCTTATCACATATACATACACCTTCACATT
65 GGCCTTATCACATATACATACACCTTCACATT
*
82216830 CATCACATTGGCCATTTGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
82216895 GCCTTATCACATATACATA
66 GCCTTATCACATATACATA
82216914 TCTTGTACAT
Statistics
Matches: 167, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
94 69 0.41
95 2 0.01
96 96 0.57
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (96 bp):
CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATATACATACACCTTCACATT
Found at i:82216871 original size:143 final size:141
Alignment explanation
Indices: 82216626--82216907 Score: 433
Period size: 143 Copynumber: 2.0 Consensus size: 141
82216616 ATCACAGTTA
* * * *
82216626 TACACTTCCACTTCCATCACATTGACCATTCGGTCTTATCATATATATATACTTTCACATTCATC
1 TACACTTCCACTTCCATCACATTGACCATTCGGCCTTATCATATACATACACCTTCACATTCATC
82216691 ACATTGGCCATTCGGCCTTATCACATACTTACACTTTCACATTCATCACATTGGCCATTCGGCCT
66 ACATTGGCCATTCGGCCTTATCACATACTTACACTTTCACATTCATCACATTGGCCATTCGGCCT
82216756 TATCACATACT
131 TATCACATACT
* *
82216767 TACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
1 TACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTAT--CATATACATACACCTTCACATTC
* * *
82216831 ATCACATTGGCCATTTGGCCTTATCATATA-TATATACTTTCACATTCATCACATTGGCCATTCG
63 ATCACATTGGCCATTCGGCCTTATCACATACT-TACACTTTCACATTCATCACATTGGCCATTCG
82216895 GCCTTATCACATA
127 GCCTTATCACATA
82216908 TACATATCTT
Statistics
Matches: 128, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
141 33 0.26
142 3 0.02
143 92 0.72
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (141 bp):
TACACTTCCACTTCCATCACATTGACCATTCGGCCTTATCATATACATACACCTTCACATTCATC
ACATTGGCCATTCGGCCTTATCACATACTTACACTTTCACATTCATCACATTGGCCATTCGGCCT
TATCACATACT
Found at i:82221445 original size:21 final size:21
Alignment explanation
Indices: 82221412--82221451 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
82221402 TTTTCTAAAC
*
82221412 TTAAAAGTCAAAACTATTAAG
1 TTAAAAGTCAAAACAATTAAG
82221433 TTAAAAGGT-AAAACAATTA
1 TTAAAA-GTCAAAACAATTA
82221452 TATTGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (21 bp):
TTAAAAGTCAAAACAATTAAG
Found at i:82228028 original size:20 final size:19
Alignment explanation
Indices: 82227990--82228029 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
82227980 CATCAATGGA
* *
82227990 AACTTTCAAAATCTTTAAC
1 AACTTTCAAAATATGTAAC
82228009 AACTTTGCAAAATATGTAAC
1 AACTTT-CAAAATATGTAAC
82228029 A
1 A
82228030 CCCCTTACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (19 bp):
AACTTTCAAAATATGTAAC
Found at i:82229723 original size:33 final size:33
Alignment explanation
Indices: 82229673--82229799 Score: 164
Period size: 33 Copynumber: 3.7 Consensus size: 33
82229663 AGTCATACCT
*
82229673 GGATTACCAGTCCAGGCTAAATCCAGTCGATTA
1 GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
* * *
82229706 GGATTACTAGTCTAGGCTAAATCTAGTCAATTAGGA
1 GGATTACCAGTCCAGGCTAAATCCAGTCAATT---A
82229742 TGGATTACCAGTCCAGGCTAAATCCAGTCAATTA
1 -GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
* *
82229776 GAATTACTAGTCCAGGCTAAATCC
1 GGATTACCAGTCCAGGCTAAATCC
82229800 GAATTGAAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
33 50 0.62
34 1 0.01
36 1 0.01
37 29 0.36
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (33 bp):
GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
Found at i:82241741 original size:40 final size:40
Alignment explanation
Indices: 82241638--82241858 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
82241628 TATTCGAATG
* *
82241638 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACT
* *
82241679 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACT
* ** * * *
82241719 ATATCCGGGCCAAAACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
82241759 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * **
82241799 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
82241838 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
82241859 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
38 13 0.09
39 15 0.10
40 93 0.62
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:82247101 original size:29 final size:29
Alignment explanation
Indices: 82247019--82247088 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
82247009 GTCATTTGGG
* * *
82247019 TTATC-AGACACTAGGTGTCAATGTTTATT
1 TTATCAAG-CACTATGTGTCGATGTTTATA
*
82247048 TTATCAAGCACTATGTGTCGGTGTTTATA
1 TTATCAAGCACTATGTGTCGATGTTTATA
82247077 TTATCAAGCACT
1 TTATCAAGCACT
82247089 TTGTACTGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 34 0.94
30 2 0.06
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (29 bp):
TTATCAAGCACTATGTGTCGATGTTTATA
Found at i:82254016 original size:47 final size:47
Alignment explanation
Indices: 82253962--82254455 Score: 875
Period size: 47 Copynumber: 10.5 Consensus size: 47
82253952 TATTTGAATA
82253962 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254009 AATGTGAAAGTGTATATATATGTGATAAGGCCT--TGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254056 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254103 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254150 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254197 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254244 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254291 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82254338 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
82254385 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
82254432 GATGTGAAAGTATATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
82254456 GAGTCCCGAA
Statistics
Matches: 433, Mismatches: 10, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
45 19 0.04
47 395 0.91
49 19 0.04
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:82256598 original size:8 final size:8
Alignment explanation
Indices: 82256585--82256616 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
82256575 CTAGATCGGC
82256585 AAAAGCCG
1 AAAAGCCG
82256593 AAAAGCCG
1 AAAAGCCG
*
82256601 AAATGCCG
1 AAAAGCCG
82256609 AAAAGCCG
1 AAAAGCCG
82256617 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:82256910 original size:28 final size:28
Alignment explanation
Indices: 82256867--82256930 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
82256857 TGTACTAGAG
* *
82256867 TACCCCTATGTTTGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
*
82256895 TACCCTTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
82256923 TACCCCTA
1 TACCCCTA
82256931 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:82257094 original size:27 final size:28
Alignment explanation
Indices: 82257036--82257125 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
82257026 AGGAAGCGTC
*
82257036 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
82257064 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
82257091 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
82257120 CTGGTG
1 CTGGTG
82257126 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:82257136 original size:29 final size:28
Alignment explanation
Indices: 82257046--82257136 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
82257036 CTGGTGGCTA
* * *
82257046 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
82257074 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
82257101 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
82257130 TGTCACA
1 TGCCACA
82257137 TTTTTTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:82258244 original size:11 final size:10
Alignment explanation
Indices: 82258216--82258249 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
82258206 AGCCTGTAAG
82258216 TATTCTGAAT
1 TATTCTGAAT
*
82258226 TTTTCTGAAT
1 TATTCTGAAT
82258236 ATATTCTGAAT
1 -TATTCTGAAT
82258247 TAT
1 TAT
82258250 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:82263789 original size:49 final size:49
Alignment explanation
Indices: 82263734--82263830 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
82263724 CATCTCTATT
*
82263734 CTTCCTTTCAACCGTTTCAAAACCTTCATAGCCTGTGGCCATAAAAAGC
1 CTTCCTTTCAACCGTTTCAAAACCTTCATAGCCTGTGCCCATAAAAAGC
82263783 CTTCCTTTCAACCGTTTCAAAACCTTCATAGCCTGTGCCCATAAAAAG
1 CTTCCTTTCAACCGTTTCAAAACCTTCATAGCCTGTGCCCATAAAAAG
82263831 TCGAAATCCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (49 bp):
CTTCCTTTCAACCGTTTCAAAACCTTCATAGCCTGTGCCCATAAAAAGC
Found at i:82264861 original size:28 final size:28
Alignment explanation
Indices: 82264818--82264881 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
82264808 TGTACTAGAG
* *
82264818 TACCCCTATGTTTGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
*
82264846 TACCCTTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
82264874 TACCCCTA
1 TACCCCTA
82264882 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:82265028 original size:28 final size:27
Alignment explanation
Indices: 82264987--82265076 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
82264977 AGGAAGCGTC
82264987 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* ** *
82265015 CTGGTGGCCCTGCCACGTAGATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
82265042 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
82265071 CTGGTG
1 CTGGTG
82265077 TCTCTGTCAG
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:82267531 original size:38 final size:38
Alignment explanation
Indices: 82267489--82267564 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
82267479 ATAAAAGTGT
82267489 GATATGACAAAGTTAATAATGCTTGAACATGAAATTGG
1 GATATGACAAAGTTAATAATGCTTGAACATGAAATTGG
82267527 GATATGACAAAGTTAATAATGCTTGAACATGAAATTGG
1 GATATGACAAAGTTAATAATGCTTGAACATGAAATTGG
82267565 TGTGGAATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (38 bp):
GATATGACAAAGTTAATAATGCTTGAACATGAAATTGG
Found at i:82271623 original size:32 final size:32
Alignment explanation
Indices: 82271582--82271646 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
82271572 GTAATAATAG
82271582 ACAAAAATTCAAAACTTAATCACAATTTTTTA
1 ACAAAAATTCAAAACTTAATCACAATTTTTTA
82271614 ACAAAAATTCAAAACTTAATCACAATTTTTTA
1 ACAAAAATTCAAAACTTAATCACAATTTTTTA
82271646 A
1 A
82271647 GCCCTAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (32 bp):
ACAAAAATTCAAAACTTAATCACAATTTTTTA
Found at i:82272804 original size:51 final size:51
Alignment explanation
Indices: 82272728--82272829 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
82272718 CTCTTCTCAA
82272728 ACTAGAAACTGATAGAATTGTTTAAAAAGTGCTCAACCTGACTCGATTCAT
1 ACTAGAAACTGATAGAATTGTTTAAAAAGTGCTCAACCTGACTCGATTCAT
*
82272779 ACTAGAAACTGATAGAATTGTTTAAAACGTGCTCAACCTGACTCGATTCAT
1 ACTAGAAACTGATAGAATTGTTTAAAAAGTGCTCAACCTGACTCGATTCAT
82272830 TGGGTCCAGA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (51 bp):
ACTAGAAACTGATAGAATTGTTTAAAAAGTGCTCAACCTGACTCGATTCAT
Found at i:82282325 original size:61 final size:61
Alignment explanation
Indices: 82282246--82282363 Score: 193
Period size: 61 Copynumber: 1.9 Consensus size: 61
82282236 AAGAAACATT
82282246 ATCAGAACTAGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGAATCAGA
1 ATCAGAACTAGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGAATCAGA
* * *
82282307 ATCAGAA-TCAGAATCAGAATTAGAATCAGAATTAGGTGACAGAATCAGAATCAGAAT
1 ATCAGAACT-AGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGAAT
82282364 TAGGTGACAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
60 1 0.02
61 52 0.98
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (61 bp):
ATCAGAACTAGAATCAGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGAATCAGA
Found at i:82282356 original size:25 final size:25
Alignment explanation
Indices: 82282297--82282388 Score: 125
Period size: 25 Copynumber: 3.7 Consensus size: 25
82282287 GAATCAGAAT
* *
82282297 CAGAATCAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATTAGGTGA
*
82282320 TCAGAATTAGAATCAGAATTAGGTGA
1 -CAGAATCAGAATCAGAATTAGGTGA
82282346 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
*
82282371 CAGAATCAGAACCAGAAT
1 CAGAATCAGAATCAGAAT
82282389 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
24 18 0.30
25 42 0.69
26 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:82282381 original size:6 final size:6
Alignment explanation
Indices: 82282246--82282363 Score: 125
Period size: 6 Copynumber: 19.3 Consensus size: 6
82282236 AAGAAACATT
* *
82282246 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
82282295 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAGA ATCAGA ATTAG-
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
82282342 GTGACAGA ATCAGA ATCAGA AT
1 AT--CAGA ATCAGA ATCAGA AT
82282364 TAGGTGACAG
Statistics
Matches: 94, Mismatches: 10, Indels: 16
0.78 0.08 0.13
Matches are distributed among these distances:
5 3 0.03
6 83 0.88
7 6 0.06
8 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:82283123 original size:27 final size:27
Alignment explanation
Indices: 82282782--82283110 Score: 424
Period size: 27 Copynumber: 12.2 Consensus size: 27
82282772 AACACCCTAG
* *
82282782 GGGTAAAATGATAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
82282809 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*** * *
82282836 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
82282863 GGGTAAAATGGTAATTCTATAGATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*** *
82282890 GGGTAAAACATTAATTTTGTAAATTGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
82282917 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
82282944 GGGTAAAATGATAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * * *
82282971 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
82282998 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
82283025 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
82283052 GGGTAAAATAGTAATTTTGTAAGTCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
82283079 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
82283106 GGGTA
1 GGGTA
82283111 CTTTGGTAAT
Statistics
Matches: 266, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 266 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGTAAATCGA
Found at i:82283170 original size:26 final size:27
Alignment explanation
Indices: 82283116--82283175 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
82283106 GGGTACTTTG
* *
82283116 GTAATTTTACAAGTTAAGGGTATTTCA
1 GTAATTTTACAAGTCAACGGTATTTCA
*
82283143 GTAATTTTACAA-TCGACGGTATTTCA
1 GTAATTTTACAAGTCAACGGTATTTCA
82283169 GTAATTT
1 GTAATTT
82283176 GATATTTGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 18 0.60
27 12 0.40
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.42
Consensus pattern (27 bp):
GTAATTTTACAAGTCAACGGTATTTCA
Found at i:82286170 original size:18 final size:18
Alignment explanation
Indices: 82286142--82286195 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
82286132 TGGCCCATTG
*
82286142 CAGTAACAGTAAACAGTA
1 CAGTAATAGTAAACAGTA
*
82286160 CAGTAGTAGTAAACAGTA
1 CAGTAATAGTAAACAGTA
82286178 CAGTAATAGTAAACAGTA
1 CAGTAATAGTAAACAGTA
82286196 TGCAAGTCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (18 bp):
CAGTAATAGTAAACAGTA
Found at i:82286533 original size:26 final size:26
Alignment explanation
Indices: 82286503--82286717 Score: 162
Period size: 27 Copynumber: 8.0 Consensus size: 26
82286493 ATAAAAATAC
* *
82286503 ACCACATAGGGTAAAACAGTCATCTT
1 ACCACATAGGGCAAAACAGTCATTTT
* * *
82286529 ACCACAAAGGGCAAAACAATTATTTT
1 ACCACATAGGGCAAAACAGTCATTTT
* *
82286555 ACCATATAAGGGCAAAATAGTCATTTT
1 ACCACAT-AGGGCAAAACAGTCATTTT
* * * * *
82286582 ACCTCATAAGTGCGAAACAATTATTTT
1 ACCACAT-AGGGCAAAACAGTCATTTT
** *
82286609 ACCTTATAAGGGCAAAACAATCATTTT
1 ACCACAT-AGGGCAAAACAGTCATTTT
*
82286636 ACC-CTATAAAGGCAAAACAGTCATTTT
1 ACCAC-AT-AGGGCAAAACAGTCATTTT
* * *
82286663 ACCTCATAAGGGAAAAATAGTCATTTT
1 ACCACAT-AGGGCAAAACAGTCATTTT
* * *
82286690 ACCCCATAAGGGAAAAACAATCATTTT
1 ACCACAT-AGGGCAAAACAGTCATTTT
82286717 A
1 A
82286718 ACAATTTGGG
Statistics
Matches: 156, Mismatches: 30, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
26 26 0.17
27 129 0.83
28 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (26 bp):
ACCACATAGGGCAAAACAGTCATTTT
Found at i:82286580 original size:27 final size:26
Alignment explanation
Indices: 82286535--82286717 Score: 195
Period size: 27 Copynumber: 6.8 Consensus size: 26
82286525 TCTTACCACA
*
82286535 AAGGGCAAAACAATTATTTTACCATAT
1 AAGGGCAAAACAATCATTTTACC-TAT
* *
82286562 AAGGGCAAAATAGTCATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACCT-AT
* * *
82286589 AAGTGCGAAACAATTATTTTACCTTAT
1 AAGGGCAAAACAATCATTTTACC-TAT
82286616 AAGGGCAAAACAATCATTTTACCCTAT
1 AAGGGCAAAACAATCATTTTA-CCTAT
* *
82286643 AAAGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACCT-AT
* * * *
82286670 AAGGGAAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAACAATCATTTTA-CCTAT
*
82286697 AAGGGAAAAACAATCATTTTA
1 AAGGGCAAAACAATCATTTTA
82286718 ACAATTTGGG
Statistics
Matches: 132, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.03
27 123 0.93
28 5 0.04
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (26 bp):
AAGGGCAAAACAATCATTTTACCTAT
Found at i:82286606 original size:54 final size:52
Alignment explanation
Indices: 82286510--82286717 Score: 229
Period size: 54 Copynumber: 3.9 Consensus size: 52
82286500 TACACCACAT
* * *
82286510 AGGGTAAAACAGTCATCTTACCACA-AAGGGCAAAACAATTATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACC-CATAAGGGCAAAACAATCATTTTACC-TATA
* * * *
82286563 AGGGCAAAATAGTCATTTTACCTCATAAGTGCGAAACAATTATTTTACCTTATA
1 AGGGCAAAACAGTCATTTTACC-CATAAGGGCAAAACAATCATTTTACC-TATA
* * *
82286617 AGGGCAAAACAATCATTTTACCCTATAAAGGCAAAACAGTCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCC-ATAAGGGCAAAACAATCATTTTACCT-ATA
* * *
82286671 AGGGAAAAATAGTCATTTTACCCCATAAGGGAAAAACAATCATTTTA
1 AGGGCAAAACAGTCATTTTA-CCCATAAGGGCAAAACAATCATTTTA
82286718 ACAATTTGGG
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
53 23 0.18
54 105 0.80
55 3 0.02
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.27
Consensus pattern (52 bp):
AGGGCAAAACAGTCATTTTACCCATAAGGGCAAAACAATCATTTTACCTATA
Found at i:82286635 original size:81 final size:80
Alignment explanation
Indices: 82286522--82286717 Score: 254
Period size: 81 Copynumber: 2.4 Consensus size: 80
82286512 GGTAAAACAG
* * * * *
82286522 TCATCTTACCACA-AAGGGCAAAACAATTATTTTACCATATAAGGGCAAAATAGTCATTTTACCT
1 TCATTTTACCCCATAAGGGCAAAACAATCATTTTACCATATAAAGGCAAAACAGTCATTTTACCT
82286586 CATAAGTGCGAAACAAT-
66 CATAAG-G-GAAA-AATA
** *
82286603 T-ATTTTACCTTATAAGGGCAAAACAATCATTTTACCCTATAAAGGCAAAACAGTCATTTTACCT
1 TCATTTTACCCCATAAGGGCAAAACAATCATTTTACCATATAAAGGCAAAACAGTCATTTTACCT
82286667 CATAAGGGAAAAATA
66 CATAAGGGAAAAATA
*
82286682 GTCATTTTACCCCATAAGGGAAAAACAATCATTTTA
1 -TCATTTTACCCCATAAGGGCAAAACAATCATTTTA
82286718 ACAATTTGGG
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 4 0.04
80 10 0.10
81 84 0.83
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (80 bp):
TCATTTTACCCCATAAGGGCAAAACAATCATTTTACCATATAAAGGCAAAACAGTCATTTTACCT
CATAAGGGAAAAATA
Found at i:82290075 original size:18 final size:18
Alignment explanation
Indices: 82290049--82290085 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
82290039 CTTGGCCCAT
82290049 TGCACTAACAGTAAACAG
1 TGCACTAACAGTAAACAG
*
82290067 TGCAGTAACAGTAAACAG
1 TGCACTAACAGTAAACAG
82290085 T
1 T
82290086 ATGCAAGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (18 bp):
TGCACTAACAGTAAACAG
Found at i:82290449 original size:27 final size:27
Alignment explanation
Indices: 82290419--82290665 Score: 190
Period size: 27 Copynumber: 9.1 Consensus size: 27
82290409 AACAGTTATC
*
82290419 TTACCATAAACGGGCAAAAAAATCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
* * * * * *
82290446 TTACCACATAGGGGTAAAATAGTCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
82290473 TTACCATAAAAGGGCAAAAAAATCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
* * * * * *
82290500 TTACCACATAGGGGTAAAATAGTCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
82290527 TTACCATAAAAGGGCAAAAAAATCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
* * * * * *
82290554 TTACCACATAGGGGTAAAACAATCATC
1 TTACCATAAAAGGGCAAAAAAATCATT
* **
82290581 TTACCATAAAAAGGCAAAACGATCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
** * * ** *
82290608 TTACCCCATAACGGCAAAACGACCATT
1 TTACCATAAAAGGGCAAAAAAATCATT
* * *
82290635 TTACC-TCATAAGGGCAAAATAGTCATT
1 TTACCAT-AAAAGGGCAAAAAAATCATT
82290662 TTAC
1 TTAC
82290666 ACCATAAGGG
Statistics
Matches: 171, Mismatches: 48, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (27 bp):
TTACCATAAAAGGGCAAAAAAATCATT
Found at i:82290689 original size:54 final size:54
Alignment explanation
Indices: 82290396--82290691 Score: 355
Period size: 54 Copynumber: 5.5 Consensus size: 54
82290386 AAACATATAT
* * * *
82290396 CACATAGTGGTAAAACAGTTATCTTACCATAAACGGGCAAAAAAATCATTTTAC
1 CACATAGGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
*
82290450 CACATAGGGGTAAAATAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
1 CACATAGGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
*
82290504 CACATAGGGGTAAAATAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
1 CACATAGGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
* * * **
82290558 CACATAGGGGTAAAACAATCATCTTACCATAAAAAGGCAAAACGATCATTTTAC
1 CACATAGGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
* ** * * * * *
82290612 CCCATAACGGCAAAAC-GACCATTTTACC-TCATAAGGGCAAAATAGTCATTTTA-
1 CACATAGGGGTAAAACAG-TCATTTTACCAT-AAAAGGGCAAAAAAATCATTTTAC
* *
82290665 CACCATAAGGGAAAAACAGTCATTTTA
1 CA-CATAGGGGTAAAACAGTCATTTTA
82290692 ACAATTTAAG
Statistics
Matches: 211, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.01
54 208 0.99
55 1 0.00
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.25
Consensus pattern (54 bp):
CACATAGGGGTAAAACAGTCATTTTACCATAAAAGGGCAAAAAAATCATTTTAC
Found at i:82293161 original size:44 final size:45
Alignment explanation
Indices: 82293098--82293223 Score: 159
Period size: 45 Copynumber: 2.8 Consensus size: 45
82293088 CACTAGGAAA
82293098 TAAGAAATCTGAACTTATTGAGTTGGT-CGAGTTCAT-GATATATG
1 TAAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCATAG-TATATG
* *
82293142 TAAGAAATCCGAACTTATTGAGTTGGTCCAAGTTCATAGTATATG
1 TAAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCATAGTATATG
* * * *
82293187 TGAAG-CATCTGAGCTCATTAAGTTGGTCCGAGTTCAT
1 T-AAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCAT
82293224 TATGGATACG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
44 26 0.37
45 41 0.58
46 4 0.06
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (45 bp):
TAAGAAATCTGAACTTATTGAGTTGGTCCGAGTTCATAGTATATG
Found at i:82297587 original size:22 final size:22
Alignment explanation
Indices: 82297557--82297602 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
82297547 TTTTGAGTAA
*
82297557 AGGATAGATAGTCTGAATGAAG
1 AGGACAGATAGTCTGAATGAAG
82297579 AGGACAGATAGTCTGAATGAAG
1 AGGACAGATAGTCTGAATGAAG
82297601 AG
1 AG
82297603 TTTATATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.20
Consensus pattern (22 bp):
AGGACAGATAGTCTGAATGAAG
Found at i:82299908 original size:45 final size:44
Alignment explanation
Indices: 82299844--82299968 Score: 146
Period size: 45 Copynumber: 2.8 Consensus size: 44
82299834 CTAGGAATTA
*
82299844 AGAAATACGAACTTGTTGAGTTGGTCCGAGTTCAT-GATATATGTG
1 AGAAAT-CGAACTTGTTGAGTTGGTCCAAGTTCATAG-TATATGTG
*
82299889 AGAAATCTGAACTTGTTGAGTTGGTCCAAGTTCGTAGTATATGTG
1 AGAAATC-GAACTTGTTGAGTTGGTCCAAGTTCATAGTATATGTG
* * *
82299934 A-AGCATCCGAGCTCGTTGAGTTGGTCCAAGTTCAT
1 AGA-AAT-CGAACTTGTTGAGTTGGTCCAAGTTCAT
82299969 TATGGATGCA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
44 2 0.03
45 66 0.94
46 2 0.03
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (44 bp):
AGAAATCGAACTTGTTGAGTTGGTCCAAGTTCATAGTATATGTG
Found at i:82318339 original size:18 final size:18
Alignment explanation
Indices: 82318316--82318353 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
82318306 AGGCTTGGCT
82318316 AATAAGGAAATTT-GATAA
1 AATAAGG-AATTTCGATAA
82318334 AATAAGGAATTTCGATAA
1 AATAAGGAATTTCGATAA
82318352 AA
1 AA
82318354 ATCAACTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.55, C:0.03, G:0.16, T:0.26
Consensus pattern (18 bp):
AATAAGGAATTTCGATAA
Found at i:82320129 original size:19 final size:19
Alignment explanation
Indices: 82320105--82320151 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
82320095 TCTCGTATGG
82320105 CATAGGCTCTAGCTGGAGC
1 CATAGGCTCTAGCTGGAGC
82320124 CATAGGCTCTAGCTGGAGC
1 CATAGGCTCTAGCTGGAGC
*
82320143 CCTAGGCTC
1 CATAGGCTC
82320152 AGATCGCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (19 bp):
CATAGGCTCTAGCTGGAGC
Found at i:82321561 original size:62 final size:62
Alignment explanation
Indices: 82321485--82321609 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
82321475 GAACCAACTA
82321485 AACCGTAGCTCTGATACCACTAAATTAACACCCCTTACCCGTATCCTAGACTGGGACAGGGT
1 AACCGTAGCTCTGATACCACTAAATTAACACCCCTTACCCGTATCCTAGACTGGGACAGGGT
* *
82321547 AACCGTAGCTCTGATACCACTAAATTAACCCCCCTTCCCCGTATCCTAGACTGGGACAGGGT
1 AACCGTAGCTCTGATACCACTAAATTAACACCCCTTACCCGTATCCTAGACTGGGACAGGGT
82321609 A
1 A
82321610 CAAGCCATTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (62 bp):
AACCGTAGCTCTGATACCACTAAATTAACACCCCTTACCCGTATCCTAGACTGGGACAGGGT
Found at i:82328287 original size:61 final size:62
Alignment explanation
Indices: 82328176--82328308 Score: 196
Period size: 61 Copynumber: 2.2 Consensus size: 62
82328166 GTGACGACAC
* * *
82328176 GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACGGTCGAGTGATGGCCAGAGTGT
1 GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACAGCCGAGTGATAGCCAGAGTGT
* * * *
82328238 GGCCATGTGAACAA-AAAGGTCAGGTCGTGCGCGAGACACAGCCGTGTGATAGCCAGAGTGT
1 GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACAGCCGAGTGATAGCCAGAGTGT
82328299 GGCCGTGTGA
1 GGCCGTGTGA
82328309 GCCACACGGG
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
61 50 0.79
62 13 0.21
ACGTcount: A:0.26, C:0.22, G:0.37, T:0.16
Consensus pattern (62 bp):
GGCCGTGTGAACAACAAAAGCCAGGTCGTGCGCGAGACACAGCCGAGTGATAGCCAGAGTGT
Found at i:82331184 original size:46 final size:46
Alignment explanation
Indices: 82331113--82331423 Score: 484
Period size: 46 Copynumber: 6.7 Consensus size: 46
82331103 AACCCGCCCC
* * * *
82331113 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
82331159 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82331207 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82331252 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82331298 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82331344 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82331390 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82331424 TGCTCAACCA
Statistics
Matches: 245, Mismatches: 13, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
43 6 0.02
44 2 0.01
45 2 0.01
46 198 0.81
47 29 0.12
48 2 0.01
49 2 0.01
50 4 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82338940 original size:46 final size:45
Alignment explanation
Indices: 82338873--82339037 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
82338863 CGCCCCTAAG
*
82338873 TGAACTCGGACTCAACTCAACGAGGTCAGGCTTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGGCTTT-GCATCCATAAA
* * *
82338919 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTC--A-GGCT--TTGCATCCATAAA
* *
82338966 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCAGG-C-TTTGCATCCATAAA
82339012 TGAACTC-GACTCAACTCAACGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
82339038 GGATGCTCAA
Statistics
Matches: 99, Mismatches: 10, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 21 0.21
46 32 0.32
47 27 0.27
48 2 0.02
49 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCAGGCTTTGCATCCATAAA
Found at i:82338989 original size:93 final size:92
Alignment explanation
Indices: 82338874--82339043 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 92
82338864 GCCCCTAAGT
82338874 GAACTCGGACTCAACTCAACGAGGTCAGG-C-TTTCGCATCCATAAATGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGGTC-GGACATTT-GCATCCATAAATGAACTC-GACTCAACTC
82338937 AACGAGTTCGGATGCCTAGTTACATCTCAC
63 AACGAGTTCGGATGCCTAGTTACATCTCAC
* *
82338967 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGGTCGGACATTTGCATCCATAAATGAACTCGACTCAACTCAAC
82339032 GAGTTCGGATGC
66 GAGTTCGGATGC
82339044 TCAACCATCC
Statistics
Matches: 73, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
92 27 0.37
93 43 0.59
94 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGGTCGGACATTTGCATCCATAAATGAACTCGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82339059 original size:45 final size:45
Alignment explanation
Indices: 82338871--82339059 Score: 131
Period size: 46 Copynumber: 4.1 Consensus size: 45
82338861 CCCGCCCCTA
* * * * * *
82338871 AGTGAACTCGGACTCAACTCAACGAGGTCAGGCTTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAACCATCT
*
82338917 AATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
82338964 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
82339010 AGTGAACTC-GACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
82339055 AGTGA
1 AGTGA
82339060 CATGTCACTT
Statistics
Matches: 114, Mismatches: 14, Indels: 31
0.72 0.09 0.19
Matches are distributed among these distances:
43 9 0.08
44 4 0.04
45 29 0.25
46 36 0.32
47 31 0.27
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:82340101 original size:59 final size:59
Alignment explanation
Indices: 82340009--82340125 Score: 184
Period size: 59 Copynumber: 2.0 Consensus size: 59
82339999 ACTACTAAAC
*
82340009 TTTCCAAAAATTCCTTCCATGTCCTAATTTTTTCCATGAAATTA-AAATTGGTCAAATTG
1 TTTCCAAAAATTCCATCCATGTCCTAATTTTTTCCAT-AAATTAGAAATTGGTCAAATTG
*
82340068 TTTCCAAAAATTCCATCCATGTCC-AATTTTTTTCCATAACTTAGAAATTGGTCAAATT
1 TTTCCAAAAATTCCATCCATGTCCTAA-TTTTTTCCATAAATTAGAAATTGGTCAAATT
82340126 TCTATTTAAG
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
58 7 0.13
59 47 0.87
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (59 bp):
TTTCCAAAAATTCCATCCATGTCCTAATTTTTTCCATAAATTAGAAATTGGTCAAATTG
Found at i:82342032 original size:64 final size:64
Alignment explanation
Indices: 82341951--82342134 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
82341941 AGACATTATG
* *
82341951 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGAGATAA
* * * * * * *
82342015 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAAACAAGAGAGCTACGAGAT
82342080 AA
63 AA
* * * * **
82342082 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGC
82342135 CGAACTATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGAGATAA
Found at i:82344933 original size:30 final size:31
Alignment explanation
Indices: 82344897--82344959 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
82344887 ACTTATTTTA
*
82344897 TTGTTAA-TTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTTATTATTATTTTAAAGACAT
*
82344927 TTGTTAATTTTTATTATTATTTTAGAGACAT
1 TTGTTAATTTTTATTATTATTTTAAAGACAT
82344958 TT
1 TT
82344960 ACTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAAAGACAT
Found at i:82345066 original size:18 final size:18
Alignment explanation
Indices: 82345043--82345082 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
82345033 GAAATATTTA
*
82345043 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
82345061 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
82345079 TTTT
1 TTTT
82345083 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:82345114 original size:12 final size:12
Alignment explanation
Indices: 82345084--82345116 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
82345074 TATATTTTTT
82345084 AAAATT-ATATA
1 AAAATTAATATA
82345095 AAAA-TAATATA
1 AAAATTAATATA
82345106 AAAATTAATAT
1 AAAATTAATAT
82345117 GGGTGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:82358468 original size:40 final size:39
Alignment explanation
Indices: 82358437--82358646 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
82358427 GGACTAAGAT
* *
82358437 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
82358477 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
82358517 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
82358557 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
82358597 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
82358636 CCGAAGGCATT
1 CCGAAGGCATT
82358647 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:82358600 original size:120 final size:120
Alignment explanation
Indices: 82358384--82358646 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
82358374 TTGAATGCTG
* *
82358384 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
82358448 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
82358504 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
82358567 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
82358623 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82358647 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:82358666 original size:79 final size:80
Alignment explanation
Indices: 82358385--82358681 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
82358375 TGAATGCTGT
* ** * * * **
82358385 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
82358448 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
82358465 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
82358529 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
82358545 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
82358609 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
82358624 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
82358682 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:82360048 original size:2 final size:2
Alignment explanation
Indices: 82360043--82360071 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
82360033 TATATAGATA
82360043 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
82360072 CTCCAATAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:82362051 original size:62 final size:62
Alignment explanation
Indices: 82361954--82362239 Score: 371
Period size: 62 Copynumber: 4.6 Consensus size: 62
82361944 GTGCGGGGTT
* *
82361954 CACACGGCCAAGGACACGGGCGTATGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
1 CACACGGCCAAGGACACGGGCATGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
* *
82362016 CACACGGCCAGGGACACAGGCATGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAA-
1 CACACGGCCAAGGACACGGGCATGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
* * *
82362077 C-CATGGCCAAGGACACGGGCATGTTCCC-GGTCCGTGTAACTCACTGTTTGTGCTTAAAAAC
1 CACACGGCCAAGGACACGGGCATGTGCCCAGG-CCATGTAACTCACTGTTTGTGCTTAAAAAC
* * ** * * * *
82362138 CACATGGCTAAGGACACAAGCTTGTGCCCAGGTCACGTAACTCACTATTTGTGCTTAAAAAC
1 CACACGGCCAAGGACACGGGCATGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
* * *
82362200 CACACTGCCAAGGCACACGGGCGTGTGCCAAGGCCATGTA
1 CACACGGCCAAGG-ACACGGGCATGTGCCCAGGCCATGTA
82362240 GTAGGATATT
Statistics
Matches: 192, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
59 2 0.01
60 51 0.27
61 2 0.01
62 115 0.60
63 22 0.11
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (62 bp):
CACACGGCCAAGGACACGGGCATGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
Found at i:82362135 original size:122 final size:122
Alignment explanation
Indices: 82361959--82362239 Score: 368
Period size: 122 Copynumber: 2.3 Consensus size: 122
82361949 GGGTTCACAC
*
82361959 GGCCAAGGACACGGGCGTATGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGC
1 GGCCAAGGACACGGGCATATGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGC
* * * *
82362024 CAGGGACACAGGCATGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCAT
66 CAAGGACACAAGCATGTGCCCAGGCCACGTAACTCACTATTTGTGCTTAAAAACCAT
* * * *
82362081 GGCCAAGGACACGGGCATGTTCCC-GGTCCGTGTAACTCACTGTTTGTGCTTAAAAACCACATGG
1 GGCCAAGGACACGGGCATATGCCCAGG-CCATGTAACTCACTGTTTGTGCTTAAAAACCACACGG
* * *
82362145 CTAAGGACACAAGCTTGTGCCCAGGTCACGTAACTCACTATTTGTGCTTAAAAACCACACT
65 CCAAGGACACAAGCATGTGCCCAGGCCACGTAACTCACTATTTGTGCTTAAAAA-C-CA-T
* * *
82362206 -GCCAAGGCACACGGGCGTGTGCCAAGGCCATGTA
1 GGCCAAGG-ACACGGGCATATGCCCAGGCCATGTA
82362240 GTAGGATATT
Statistics
Matches: 137, Mismatches: 16, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
121 2 0.01
122 103 0.75
123 1 0.01
124 9 0.07
125 20 0.15
126 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.21
Consensus pattern (122 bp):
GGCCAAGGACACGGGCATATGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAACCACACGGC
CAAGGACACAAGCATGTGCCCAGGCCACGTAACTCACTATTTGTGCTTAAAAACCAT
Found at i:82364139 original size:46 final size:46
Alignment explanation
Indices: 82364068--82364184 Score: 139
Period size: 46 Copynumber: 2.5 Consensus size: 46
82364058 GTGTCGATGC
* *
82364068 CATGTCCCAGATATAGTCTTACACTGAC-TATCATCTC-ATAGCCGACG
1 CATGTCCCAGACAT-GTCTTACACTGACTTA-CATCTCGAGA-CCGACG
* *
82364115 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGACCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACATCTCGAGACCGACG
* *
82364161 CATGTCCAAGACATGTATTACACT
1 CATGTCCCAGACATGTCTTACACT
82364185 AGCACTCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
46 45 0.73
47 17 0.27
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACATCTCGAGACCGACG
Found at i:82366646 original size:52 final size:53
Alignment explanation
Indices: 82366473--82366675 Score: 149
Period size: 54 Copynumber: 3.8 Consensus size: 53
82366463 AGGGTTTAAG
* * * * * * * *
82366473 GATACCAAGTAAGACCATACCAA-AGCATGGCATTGTTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGA-CATGGAAATGGTAAG-TTCATAAGGCAAA
* * * * * * * * *
82366527 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAA
1 GATACCACGTAAGACCATGCCAAGACATGGAAATGGT-AAGTTC-ATAAGGCAAA
* * * * * *
82366582 GATCCCATGTAAGACCATGCCAAG-GATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGCAAA
82366634 GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
82366676 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 27, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
52 31 0.26
53 17 0.14
54 39 0.33
55 31 0.26
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGCAAA
Found at i:82380768 original size:40 final size:40
Alignment explanation
Indices: 82380677--82380846 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
82380667 TCCTCGTTCA
* * * * *
82380677 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
82380716 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
82380756 AATGCCTTCGGGACTTAATCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
82380796 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
82380836 AAGGCCTTCGG
1 AATGCCTTCGG
82380847 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:82380887 original size:80 final size:80
Alignment explanation
Indices: 82380719--82380899 Score: 186
Period size: 80 Copynumber: 2.3 Consensus size: 80
82380709 CTCACACCAT
* * * * *
82380719 GCCTTCGGGACGTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAATCCGGCTTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAATCCGGATATA
* *
82380784 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* ** * *
82380799 GCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAATCCGGATAT
* **
82380863 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
82380879 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82380900 CAGCATTCAA
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 3 0.04
80 74 0.90
81 5 0.06
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAATCCGGATATA
ATAACTAGCACGAAA
Found at i:82389619 original size:13 final size:15
Alignment explanation
Indices: 82389590--82389621 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
82389580 GAGAAAAGTT
82389590 GATTCAGAGGCAAGA
1 GATTCAGAGGCAAGA
82389605 GATTCA-AGG-AAGA
1 GATTCAGAGGCAAGA
82389618 GATT
1 GATT
82389622 GATGAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 3 0.18
15 6 0.35
ACGTcount: A:0.41, C:0.09, G:0.31, T:0.19
Consensus pattern (15 bp):
GATTCAGAGGCAAGA
Found at i:82393441 original size:27 final size:27
Alignment explanation
Indices: 82393411--82393587 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
82393401 AAATTGTACA
* * *
82393411 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
82393438 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
82393465 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
82393492 GCACTAAGTGTGCGAGCCTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
82393520 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
82393547 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
82393574 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
82393588 GGCTCAATGT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:82393524 original size:82 final size:81
Alignment explanation
Indices: 82393411--82393566 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
82393401 AAATTGTACA
** * * *
82393411 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
82393475 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
82393492 GCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
82393557 TGCGAGTTGA
65 TGCGAATTGA
82393567 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82393578 original size:82 final size:81
Alignment explanation
Indices: 82393407--82393587 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
82393397 GATTAAATTG
* ** * * *
82393407 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82393472 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82393488 TGCGGCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82393552 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82393570 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82393588 GGCTCAATGT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82397577 original size:42 final size:43
Alignment explanation
Indices: 82397487--82397582 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
82397477 AATGCCAACG
* * *
82397487 TGGTCTTACATGTAATCAAACATCAATGCCACTGTCCCAAACA
1 TGGTCTTACACGAAATCAAACATCAATGCCAATGTCCCAAACA
* * * * *
82397530 GGGTCTTACACGAAATCAGATA-CAATGTCAATGTCCCAGACA
1 TGGTCTTACACGAAATCAAACATCAATGCCAATGTCCCAAACA
82397572 TGGTCTTACAC
1 TGGTCTTACAC
82397583 ATAAAATAGA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 27 0.61
43 17 0.39
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGAAATCAAACATCAATGCCAATGTCCCAAACA
Found at i:82398975 original size:31 final size:31
Alignment explanation
Indices: 82398940--82398999 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
82398930 GAAGAGAAAG
*
82398940 TAAAAGTAATCTGTGATAGTCTGAAAGCAGC
1 TAAAAGAAATCTGTGATAGTCTGAAAGCAGC
82398971 TAAAAGAAATCTGTGATAGTCTGAAAGCA
1 TAAAAGAAATCTGTGATAGTCTGAAAGCA
82399000 TCTTTGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (31 bp):
TAAAAGAAATCTGTGATAGTCTGAAAGCAGC
Found at i:82400064 original size:18 final size:17
Alignment explanation
Indices: 82400011--82400065 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
82400001 TGAATAAATT
82400011 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
82400030 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
82400047 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
82400065 A
1 A
82400066 ATGAGTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:82400579 original size:18 final size:17
Alignment explanation
Indices: 82400526--82400580 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
82400516 TGAATAAATT
82400526 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
82400545 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
82400562 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
82400580 A
1 A
82400581 GTGAGTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:82400687 original size:515 final size:516
Alignment explanation
Indices: 82399715--82400745 Score: 1983
Period size: 515 Copynumber: 2.0 Consensus size: 516
82399705 TCTATTAGTT
82399715 AAAGGTGTCAATTGGCCTTGGCTTTTAAATATAATGGCCTTAAATGGTAATTAAACCATTTTATT
1 AAAGGTGTCAATTGGCCTTGGCTTTTAAATATAATGGCCTTAAATGGTAATTAAACCATTTTATT
82399780 TATGAGTGGACAAAGATGGACTTATATTAAGTGCTTTATATAGTTTATTAATAAGGTTATTTTGG
66 TATGAGTGGACAAAGATGGACTTATATTAAGTGCTTTATATAGTTTATTAATAAGGTTATTTTGG
82399845 TAAATTGATGATGTGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
131 TAAATTGATGATGTGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
* * *
82399910 TAAACTCGAGGGGACCAAGTGCAAAATGAGACGTTTAATTTTATTTTGTTAATAAATTGAGTTGT
196 TAAACTCGAGGGGACCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGG
*
82399975 TGGACATTATTTTTAATTGAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTA
261 TGGACATTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTA
*
82400040 GTTAATAACTCATCTTAGATTAATAAATGAGTTATTATTGAACTTCATTTAATAGATTTTTCTTT
326 GTTAATAACTCATCTTAGATTAATAAATGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTT
82400105 AATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCAT
391 AATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCAT
82400170 TTAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTATTTCATTTATTGAAGTTAG
456 TTAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTATTTCATTTATTGAAGTTAG
82400231 AAAGGTGTCAATTGGCCTTGGCTTTTAAATATAATGGCCTTAAATGGTAATTAAACCATTTTATT
1 AAAGGTGTCAATTGGCCTTGGCTTTTAAATATAATGGCCTTAAATGGTAATTAAACCATTTTATT
82400296 TATGAGTGGACAAAGATGGACTTATATTAAGTGCTTTATATAGTTTATTAATAAGGTTATTTTGG
66 TATGAGTGGACAAAGATGGACTTATATTAAGTGCTTTATATAGTTTATTAATAAGGTTATTTTGG
82400361 TAAATTGATGATGTGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
131 TAAATTGATGATGTGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
*
82400426 TAAACTCGAGGGG-CCAAGTGCAAAATGAGATGTTTAATTTCAATTTGTTAATAAATTGAGTTGG
196 TAAACTCGAGGGGACCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGG
*
82400490 TGGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTA
261 TGGACATTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTA
*
82400555 GTTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTT
326 GTTAATAACTCATCTTAGATTAATAAATGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTT
82400620 AATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCAT
391 AATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCAT
82400685 TTAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTATTTCATTTATTGAAGTTAG
456 TTAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTATTTCATTTATTGAAGTTAG
82400746 GTGTTTAATG
Statistics
Matches: 507, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
515 299 0.59
516 208 0.41
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (516 bp):
AAAGGTGTCAATTGGCCTTGGCTTTTAAATATAATGGCCTTAAATGGTAATTAAACCATTTTATT
TATGAGTGGACAAAGATGGACTTATATTAAGTGCTTTATATAGTTTATTAATAAGGTTATTTTGG
TAAATTGATGATGTGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
TAAACTCGAGGGGACCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGG
TGGACATTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTA
GTTAATAACTCATCTTAGATTAATAAATGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTT
AATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCAT
TTAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTATTTCATTTATTGAAGTTAG
Found at i:82401018 original size:18 final size:17
Alignment explanation
Indices: 82400965--82401019 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
82400955 TGAATAAATT
82400965 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
82400984 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
82401001 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
82401019 A
1 A
82401020 GTGAGTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:82401179 original size:439 final size:439
Alignment explanation
Indices: 82400361--82402147 Score: 2006
Period size: 439 Copynumber: 4.0 Consensus size: 439
82400351 GTTATTTTGG
*
82400361 TAAATTGATGATGTGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
1 TAAATTGATGATGCGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
*
82400426 TAAACTCGAGGGGCCAAGTGCAAAATGAGATGTTTAATTTCAATTTGTTAATAAATTGAGTTGGT
66 TAAACTCGAGGGGCCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGGT
82400491 GGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
131 GGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
82400556 TTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTTA
196 TTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTTA
*
82400621 ATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCATT
261 ATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCATA
* *
82400686 TAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTATTTCATTTATTGAAGTTAGGTGTT
326 TAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTAGTTCATTTATTGAAGTTAAGTGTT
*
82400751 TAATGTGTTTGAGTTTTATTAGTGTTAATTTTGTTTAATAAGTTCATTT
391 TAATGTGTTTGAGTTTTATTAGTGTTAATTATGTTTAATAAGTTCATTT
* *
82400800 TAAATTGATGATGCGATCCCGGTCGCATCATGTTTCGATACATCTTGACGACATCGAGATTGGCC
1 TAAATTGATGATGCGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
*
82400865 TAAACTCGAGGGGCCAAGTGCAAAATGAGACGTTTAATTTCAGTTTGTTAATAAATTGAGTTGGT
66 TAAACTCGAGGGGCCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGGT
82400930 GGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
131 GGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
82400995 TTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTTA
196 TTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTTA
82401060 ATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCATA
261 ATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCATA
82401125 TAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTAGTTCATTTATTGAAGTTAAGTGTT
326 TAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTAGTTCATTTATTGAAGTTAAGTGTT
82401190 TAATGTGTTTGAGTTTTATTAGTGTTAATTATGTTTAATAAGTTCATTT
391 TAATGTGTTTGAGTTTTATTAGTGTTAATTATGTTTAATAAGTTCATTT
82401239 TAAATTGATGATGCGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
1 TAAATTGATGATGCGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
* * * *
82401304 TAACCTCGAGGGGACCAAGTGCAAAATGAGACGTTTAATTTTATTTTGTTAATAAATTGAGTTGT
66 TAAACTCGAGGGG-CCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGG
* * * ** *
82401369 TGGACATTATTTTTAATTGAGTTGCTTTTTGTTAATAAATTGAGTTGGTGGACTTTATTTTTAAT
130 TGGACTTTATTTTTAATTAAGTTGC---TTG--AATAAATT-A-CTCAT---C-TTA--GTTAAT
* * * * * * * * *
82401434 TAAGTTGC-T-TGAATAAATTACTCATCTTAG-TTAATTGAGTTCATCTTAGTTAAT-AAC-TCA
182 TGAGTT-CATCTTAGTTAATAACTCATCTTAGATTAA-TAAG-TGA-GTTA-TTATTGAACTTCA
*** * * * * ** *
82401494 TCTTAGATTA-ATAAGTGAGTTATTATTGAA-CTTCATTTAATAGATGTTTCTTTAATTAAT-C-
242 T-TTA-A-TAGAT--GTTTCTT-TAATT-AATC-T-AGTTACTAG--GATAATTT-ATTGATGCA
** * ** * * * * * * **
82401555 T-AG-TTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCATATAATT
295 TGAGTTTA--AGTTTAATTAATT-ATGTTTCA-TATAA-TTAAACT-AGT-TGCTGGA-ATAATT
* * * * * * * * *
82401618 -A--AACT-AGTTGTTGGAATAATTGA-TGAATAAGTTTTAGTTCATTTATTGAAG-TTAAGTGT
352 GATGAA-TAAGTT-TTAG-TTCATTTATTG---AAG-TTAAG-T-GTTTAATG-TGTTTGAGT-T
* * * * *
82401677 TTAAT-GTGTTTGAGTTTTATTAGTGTTAATTATGTTTAATAAGT
406 TTATTAGTG-TT-A--ATTA-T-GT-TTAA-TAAG-TTCAT--TT
* * * * * * ** * *
82401721 TCATTTTA-AAT-TGAT---GAT-GCGATCCCG-GTCGCAT-CATGTTTCGATACATCTTGACGA
1 TAAATTGATGATGCGATCCCGGTCGC-ATCATGTTTCG-ATACA--TCTCG----A---T---GA
*
82401778 CATCGAGATTGGCCTAAACTCGAGGGGCCAAGTGCAAAATGAGACGTTTAATTTCAGTTTGTTAA
52 CATCGAGATTGGCCTAAACTCGAGGGGCCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAA
* *
82401843 TAAATGGAGTTGGTGGACTTTATTTTTAATGAAGTTGCTTGAATAAATTACTCATCTTAGTTAAT
117 TAAATTGAGTTGGTGGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAAT
*
82401908 TGAGTTCATCTTAGTTAATAACTCATATTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAA
182 TGAGTTCATCTTAGTTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAA
82401973 TAGATGTTTCTTTAATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATT
247 TAGATGTTTCTTTAATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATT
82402038 AATTATGTTTCATATAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTAGTTCATTTAT
312 AATTATGTTTCATATAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTAGTTCATTTAT
82402103 TGAAGTTAAGTGTTTAATGTGTTTGAGTTTTATTAGTGTTAATTA
377 TGAAGTTAAGTGTTTAATGTGTTTGAGTTTTATTAGTGTTAATTA
82402148 NNNNNNNNNN
Statistics
Matches: 1122, Mismatches: 133, Indels: 173
0.79 0.09 0.12
Matches are distributed among these distances:
439 505 0.45
440 71 0.06
443 3 0.00
445 8 0.01
446 1 0.00
447 2 0.00
450 1 0.00
451 7 0.01
452 23 0.02
453 17 0.02
454 11 0.01
455 15 0.01
456 16 0.01
457 5 0.00
458 9 0.01
459 9 0.01
460 15 0.01
461 21 0.02
462 19 0.02
463 20 0.02
464 20 0.02
465 19 0.02
466 21 0.02
467 15 0.01
468 9 0.01
469 9 0.01
470 5 0.00
471 16 0.01
472 15 0.01
473 11 0.01
474 17 0.02
475 22 0.02
476 15 0.01
477 11 0.01
478 8 0.01
479 3 0.00
480 9 0.01
481 3 0.00
482 15 0.01
484 3 0.00
485 1 0.00
487 69 0.06
488 28 0.02
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (439 bp):
TAAATTGATGATGCGATCCCGGTCGCATCATGTTTCGATACATCTCGATGACATCGAGATTGGCC
TAAACTCGAGGGGCCAAGTGCAAAATGAGACGTTTAATTTCAATTTGTTAATAAATTGAGTTGGT
GGACTTTATTTTTAATTAAGTTGCTTGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
TTAATAACTCATCTTAGATTAATAAGTGAGTTATTATTGAACTTCATTTAATAGATGTTTCTTTA
ATTAATCTAGTTACTAGGATAATTTATTGATGCATGAGTTTAAGTTTAATTAATTATGTTTCATA
TAATTAAACTAGTTGCTGGAATAATTGATGAATAAGTTTTAGTTCATTTATTGAAGTTAAGTGTT
TAATGTGTTTGAGTTTTATTAGTGTTAATTATGTTTAATAAGTTCATTT
Found at i:82401403 original size:48 final size:48
Alignment explanation
Indices: 82401347--82401443 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
82401337 TTTAATTTTA
* *
82401347 TTTTGTTAATAAATTGAGTTGTTGGACATTATTTTTAATTGAGTTGCT
1 TTTTGTTAATAAATTGAGTTGGTGGACATTATTTTTAATTAAGTTGCT
*
82401395 TTTTGTTAATAAATTGAGTTGGTGGACTTTATTTTTAATTAAGTTGCT
1 TTTTGTTAATAAATTGAGTTGGTGGACATTATTTTTAATTAAGTTGCT
82401443 T
1 T
82401444 GAATAAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.53
Consensus pattern (48 bp):
TTTTGTTAATAAATTGAGTTGGTGGACATTATTTTTAATTAAGTTGCT
Found at i:82401506 original size:18 final size:17
Alignment explanation
Indices: 82401453--82401507 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
82401443 TGAATAAATT
82401453 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
82401472 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
82401489 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
82401507 A
1 A
82401508 GTGAGTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:82401938 original size:17 final size:18
Alignment explanation
Indices: 82401913--82401946 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82401903 TTAATTGAGT
*
82401913 TCATCTTAG-TTAATAAC
1 TCATATTAGATTAATAAC
82401930 TCATATTAGATTAATAA
1 TCATATTAGATTAATAA
82401947 GTGAGTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (18 bp):
TCATATTAGATTAATAAC
Found at i:82420237 original size:65 final size:66
Alignment explanation
Indices: 82420132--82420259 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 66
82420122 ATGCTACATG
82420132 GCCTTGTGTCCCCTGGGGTACCCTTTCAAATTAAGTCAATATACACTACAGGTTTGACACGGTGT
1 GCCTTGTGTCCCCTGGGGTACCCTTTCAAATTAAGTCAATATACACTACAGGTTTGACACGGTGT
82420197 A
66 A
82420198 GCCTTGTGTCCCCT-GGGTACCCTTTCAAATTAAGTCAATATACACTACAGGTTTGACACGGT
1 GCCTTGTGTCCCCTGGGGTACCCTTTCAAATTAAGTCAATATACACTACAGGTTTGACACGGT
82420260 CTAGACACAC
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
65 48 0.77
66 14 0.23
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (66 bp):
GCCTTGTGTCCCCTGGGGTACCCTTTCAAATTAAGTCAATATACACTACAGGTTTGACACGGTGT
A
Found at i:82425691 original size:17 final size:16
Alignment explanation
Indices: 82425669--82425700 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
82425659 TAAGGTTCTA
82425669 TAGCTATTAGATACTCT
1 TAGCTATTAGA-ACTCT
82425686 TAGCTATTAGAACTC
1 TAGCTATTAGAACTC
82425701 CACTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (16 bp):
TAGCTATTAGAACTCT
Found at i:82427145 original size:38 final size:38
Alignment explanation
Indices: 82427091--82427163 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
82427081 CACACTCTAA
* *
82427091 CATCTTGTATATCTTTGAGAAAACCGTTTGGTTAGGTC
1 CATCTTGTATAACTTTGAGAAAACCGTTTGCTTAGGTC
82427129 CATCTTGTATAACTTTGAGAAAACCGTTTGCTTAG
1 CATCTTGTATAACTTTGAGAAAACCGTTTGCTTAG
82427164 CGGAAGTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (38 bp):
CATCTTGTATAACTTTGAGAAAACCGTTTGCTTAGGTC
Found at i:82430340 original size:27 final size:26
Alignment explanation
Indices: 82430310--82430362 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
82430300 ACAATTTCAC
*
82430310 TTGGGTCTCAGCCC-TCATCAAAATCAA
1 TTGGGCCT-AGCCCATC-TCAAAATCAA
82430337 TTGGGCCTAGCCCATTCTCAAAATCA
1 TTGGGCCTAGCCCA-TCTCAAAATCA
82430363 GTAACAGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 5 0.22
27 16 0.70
28 2 0.09
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (26 bp):
TTGGGCCTAGCCCATCTCAAAATCAA
Found at i:82432561 original size:24 final size:24
Alignment explanation
Indices: 82432528--82432611 Score: 123
Period size: 24 Copynumber: 3.5 Consensus size: 24
82432518 AAGTTTGCCA
82432528 ATATGGTTCTTTGTGAACTTCCCG
1 ATATGGTTCTTTGTGAACTTCCCG
* *
82432552 ATATGATTCTTTGTGAACTTCTCG
1 ATATGGTTCTTTGTGAACTTCCCG
*
82432576 ATATGGTTCTTTGTGAACTTTCCG
1 ATATGGTTCTTTGTGAACTTCCCG
*
82432600 ATTATGGCTCTT
1 A-TATGGTTCTT
82432612 ATGAGCTTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 44 0.83
25 9 0.17
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.45
Consensus pattern (24 bp):
ATATGGTTCTTTGTGAACTTCCCG
Found at i:82434696 original size:35 final size:35
Alignment explanation
Indices: 82434532--82434695 Score: 179
Period size: 35 Copynumber: 4.7 Consensus size: 35
82434522 TCCTCATTGA
* * *
82434532 AATACCATACCTACATTTAACAACTCGGTATGG-G
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
** **
82434566 AATGTCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
** * *
82434601 AATACCATACCTATGTTTCAAAACTCAGTATGGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
82434636 AATACCATACCTATC-TTTCACAACTTAGTATGGAT
1 AATACCATACCTA-CATTTCACAACTCAGTATGGAT
* *
82434671 GATACCATACCTACGTTTCACAACT
1 AATACCATACCTACATTTCACAACT
82434696 TTGCCATGGA
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
34 28 0.26
35 80 0.74
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:82434713 original size:35 final size:35
Alignment explanation
Indices: 82434595--82434713 Score: 116
Period size: 35 Copynumber: 3.4 Consensus size: 35
82434585 TTAACTCAGT
* * * * *
82434595 ATGGATAATACCATACCTATGTTTCAAAACTCAGT
1 ATGGATCATACCATACCTATCTTTCACAACTTAGC
* * *
82434630 ATGGTTAATACCATACCTATCTTTCACAACTTAGT
1 ATGGATCATACCATACCTATCTTTCACAACTTAGC
* *
82434665 ATGGATGATACCATACCTA-CGTTTCACAACTTTGCC
1 ATGGATCATACCATACCTATC-TTTCACAACTTAG-C
82434701 ATGGATCA-ACCAT
1 ATGGATCATACCAT
82434714 GGCCTTATCC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
34 1 0.01
35 65 0.89
36 7 0.10
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (35 bp):
ATGGATCATACCATACCTATCTTTCACAACTTAGC
Found at i:82439241 original size:30 final size:30
Alignment explanation
Indices: 82439205--82439264 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
82439195 TAGCTGAATG
82439205 AATGACCGTAAATGCTTGAAAAATGACTCT
1 AATGACCGTAAATGCTTGAAAAATGACTCT
*
82439235 AATGACCGTAAATTCTTGAAAAATGACTCT
1 AATGACCGTAAATGCTTGAAAAATGACTCT
82439265 TGAATTGTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (30 bp):
AATGACCGTAAATGCTTGAAAAATGACTCT
Found at i:82442924 original size:42 final size:43
Alignment explanation
Indices: 82442822--82442969 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
82442812 TGAGACATCG
* * *
82442822 TGTAAGACCGTGTCTGGGACACAGGCCTCG--ATTGAGATT-TA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTGA-ATTACA
*
82442863 TGTATAAGACCATGTCTGGGACATCA-GCATC-ATATCTG-ATTTCA
1 TG--TAAGACCATGTCTGGGACA-CAGGCATCGATAT-TGAATTACA
* *
82442907 TGTAAGACCATGTCTGGGATAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAATTACA
* *
82442950 TGTAAGACCACGTCCGGGAC
1 TGTAAGACCATGTCTGGGAC
82442970 GTCGGCATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 18
0.77 0.08 0.16
Matches are distributed among these distances:
41 3 0.03
42 25 0.28
43 51 0.58
44 7 0.08
45 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAATTACA
Found at i:82452634 original size:25 final size:25
Alignment explanation
Indices: 82452606--82452653 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
82452596 AGAACTTAAT
82452606 CAAATCTTTCAAAACTATTAAGGAC
1 CAAATCTTTCAAAACTATTAAGGAC
*
82452631 CAAATCTTTCAAAACTGTTAAGG
1 CAAATCTTTCAAAACTATTAAGG
82452654 TCACACGCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (25 bp):
CAAATCTTTCAAAACTATTAAGGAC
Found at i:82455568 original size:23 final size:23
Alignment explanation
Indices: 82455534--82455587 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
82455524 TTCTACCGTA
*
82455534 TAAGGCTTCATACGGTGCCATTT
1 TAAGGCTCCATACGGTGCCATTT
82455557 TAAGGCTCCATACGGTGCCATTT
1 TAAGGCTCCATACGGTGCCATTT
82455580 TAAGGCTC
1 TAAGGCTC
82455588 GATTGAAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (23 bp):
TAAGGCTCCATACGGTGCCATTT
Found at i:82466470 original size:19 final size:19
Alignment explanation
Indices: 82466448--82466485 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
82466438 TTTAGCCCGA
*
82466448 ATTTTGATTTTTCATTTAT
1 ATTTTGACTTTTCATTTAT
82466467 ATTTTGACTTTTCATTTAT
1 ATTTTGACTTTTCATTTAT
82466486 CTATCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.66
Consensus pattern (19 bp):
ATTTTGACTTTTCATTTAT
Found at i:82475463 original size:24 final size:24
Alignment explanation
Indices: 82475404--82475520 Score: 107
Period size: 24 Copynumber: 4.9 Consensus size: 24
82475394 AGTCATGGTC
* *
82475404 GGTAAGCTCTTACTGAGCTGATAAAC
1 GGTAAGCTC-TATTGAGCTGA-AAAT
*
82475430 AGTAAGCTCTATTGAGCTGAAAAT
1 GGTAAGCTCTATTGAGCTGAAAAT
*
82475454 GGTAAGCTCTATTGAGCTGAACA-
1 GGTAAGCTCTATTGAGCTGAAAAT
* *
82475477 -GTAAGCTCTTTTGAGCTG--GAT
1 GGTAAGCTCTATTGAGCTGAAAAT
* *
82475498 CGGTAAGCTCCAATGAGCTGAAA
1 -GGTAAGCTCTATTGAGCTGAAA
82475521 CAGTAAGCTC
Statistics
Matches: 75, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.01
22 17 0.23
23 15 0.20
24 24 0.32
25 10 0.13
26 8 0.11
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (24 bp):
GGTAAGCTCTATTGAGCTGAAAAT
Found at i:82475491 original size:46 final size:46
Alignment explanation
Indices: 82475402--82475532 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 46
82475392 CAAGTCATGG
* *
82475402 TCGGTAAGCTCTTACTGAGCTGATAAACAGTAAGCTCTATTGAGCTGAAAA
1 TCGGTAAGCTC-TAATGAGCTG--AAACAGTAAGCTCTTTTGAGCTG--AA
* *
82475453 T-GGTAAGCTCTATTGAGCTG-AACAGTAAGCTCTTTTGAGCTGGA
1 TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTTGAGCTGAA
*
82475497 TCGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT
1 TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTT
82475533 ACGAGCTATG
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
44 2 0.03
45 17 0.23
46 35 0.48
49 9 0.12
50 9 0.12
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (46 bp):
TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTTGAGCTGAA
Found at i:82475526 original size:23 final size:23
Alignment explanation
Indices: 82475405--82475531 Score: 132
Period size: 23 Copynumber: 5.4 Consensus size: 23
82475395 GTCATGGTCG
*
82475405 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGCTG--AAACA
82475431 GTAAGCTCTATTGAGCTGAAA-A
1 GTAAGCTCTATTGAGCTGAAACA
82475453 TGGTAAGCTCTATTGAGCTG-AACA
1 --GTAAGCTCTATTGAGCTGAAACA
* * * *
82475477 GTAAGCTCTTTTGAGCTGGATCG
1 GTAAGCTCTATTGAGCTGAAACA
* *
82475500 GTAAGCTCCAATGAGCTGAAACA
1 GTAAGCTCTATTGAGCTGAAACA
82475523 GTAAGCTCT
1 GTAAGCTCT
82475532 TACGAGCTAT
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
22 18 0.21
23 32 0.37
24 19 0.22
25 9 0.10
26 8 0.09
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:82478894 original size:27 final size:27
Alignment explanation
Indices: 82478864--82478922 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
82478854 GCCAAGCGTT
82478864 CTGGCGAACTCTAACTCGCCAAACCTA
1 CTGGCGAACTCTAACTCGCCAAACCTA
* * * *
82478891 CTGGTGGACTCTAGCTTGCCAAACCTA
1 CTGGCGAACTCTAACTCGCCAAACCTA
82478918 CTGGC
1 CTGGC
82478923 AGTCATAGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (27 bp):
CTGGCGAACTCTAACTCGCCAAACCTA
Found at i:82489466 original size:74 final size:74
Alignment explanation
Indices: 82489378--82489525 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
82489368 TTTGGTGTAA
** *
82489378 AGCTGAGCTTTTGGTGAATGTTTTGAGTTCTCTACTAAACTTTTTGTTTCTTCCTATTATGTGCT
1 AGCTGAGCTTTTGGTGAATGTTCGGAGTTCTCTACTAAACTTTTTGTTCCTTCCTATTATGTGCT
82489443 ATTTAGTTT
66 ATTTAGTTT
82489452 AGCTGAGCTTTTGGTGAATGTTCGGAGTTCTCTACTAAACTTTTTGTTCCTTCCTATTATGTGCT
1 AGCTGAGCTTTTGGTGAATGTTCGGAGTTCTCTACTAAACTTTTTGTTCCTTCCTATTATGTGCT
82489517 ATTTAGTTT
66 ATTTAGTTT
82489526 GGTTGAAGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.49
Consensus pattern (74 bp):
AGCTGAGCTTTTGGTGAATGTTCGGAGTTCTCTACTAAACTTTTTGTTCCTTCCTATTATGTGCT
ATTTAGTTT
Found at i:82496744 original size:3 final size:3
Alignment explanation
Indices: 82496736--82496763 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
82496726 ATTCAATACC
82496736 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
82496764 CACTTACCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:82497398 original size:17 final size:19
Alignment explanation
Indices: 82497364--82497401 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
82497354 AAACCTTTAA
82497364 TTTTCTCTTTTCTTCTTTC
1 TTTTCTCTTTTCTTCTTTC
82497383 TTTTCTC-TTT-TTCTTTC
1 TTTTCTCTTTTCTTCTTTC
82497400 TT
1 TT
82497402 CCTTCCCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTCTTTTCTTCTTTC
Found at i:82505697 original size:27 final size:27
Alignment explanation
Indices: 82505655--82505781 Score: 161
Period size: 27 Copynumber: 4.7 Consensus size: 27
82505645 CACTAGATAT
82505655 AGATAT-TGTGGCAGAGCCACCAGAAC
1 AGATATATGTGGCAGAGCCACCAGAAC
* *
82505681 AGATATATGTGGTAGAGCCACCAGATC
1 AGATATATGTGGCAGAGCCACCAGAAC
* *
82505708 AGATA-ATCGTGGCATAGCCAACAGAAC
1 AGATATAT-GTGGCAGAGCCACCAGAAC
*
82505735 AGATATATGTGGCAGAGCCACCAGATC
1 AGATATATGTGGCAGAGCCACCAGAAC
*
82505762 AGATA-ATTGTGGCATAGCCA
1 AGATATA-TGTGGCAGAGCCA
82505782 TCAGGACGCT
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
26 9 0.10
27 76 0.87
28 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATATATGTGGCAGAGCCACCAGAAC
Found at i:82505733 original size:54 final size:54
Alignment explanation
Indices: 82505662--82505781 Score: 204
Period size: 54 Copynumber: 2.2 Consensus size: 54
82505652 TATAGATATT
* * *
82505662 GTGGCAGAGCCACCAGAACAGATATATGTGGTAGAGCCACCAGATCAGATAATC
1 GTGGCATAGCCAACAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATC
*
82505716 GTGGCATAGCCAACAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATT
1 GTGGCATAGCCAACAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATC
82505770 GTGGCATAGCCA
1 GTGGCATAGCCA
82505782 TCAGGACGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (54 bp):
GTGGCATAGCCAACAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATC
Done.