Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 251 of 310
Found at i:82914465 original size:21 final size:22
Alignment explanation
Indices: 82914439--82914501 Score: 83
Period size: 21 Copynumber: 2.9 Consensus size: 22
82914429 TTGGTATTTG
82914439 GGAATTGGTACGAAATGGTAT-
1 GGAATTGGTACGAAATGGTATA
*
82914460 GGAATTGGTATGAAATGGTATA
1 GGAATTGGTACGAAATGGTATA
* * *
82914482 GTATTTGGTACGAATTGGTA
1 GGAATTGGTACGAAATGGTA
82914502 ATGGTTCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 20 0.56
22 16 0.44
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (22 bp):
GGAATTGGTACGAAATGGTATA
Found at i:82918020 original size:21 final size:21
Alignment explanation
Indices: 82917996--82918060 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
82917986 GGCTATGGAT
82917996 CATAAGTGTTAGCTAATTTGG
1 CATAAGTGTTAGCTAATTTGG
* * *
82918017 CATAAGAG-TA--TAA-GTGT
1 CATAAGTGTTAGCTAATTTGG
* *
82918034 TATAAGTGTTAGCTAATTCGG
1 CATAAGTGTTAGCTAATTTGG
82918055 CATAAG
1 CATAAG
82918061 AGTATAAGTG
Statistics
Matches: 31, Mismatches: 9, Indels: 8
0.65 0.19 0.17
Matches are distributed among these distances:
17 8 0.26
18 5 0.16
20 5 0.16
21 13 0.42
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (21 bp):
CATAAGTGTTAGCTAATTTGG
Found at i:82918048 original size:38 final size:38
Alignment explanation
Indices: 82917997--82918072 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
82917987 GCTATGGATC
*
82917997 ATAAGTGTTAGCTAATTTGGCATAAGAGTATAAGTGTT
1 ATAAGTGTTAGCTAATTCGGCATAAGAGTATAAGTGTT
82918035 ATAAGTGTTAGCTAATTCGGCATAAGAGTATAAGTGTT
1 ATAAGTGTTAGCTAATTCGGCATAAGAGTATAAGTGTT
82918073 CATTTCTTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.36
Consensus pattern (38 bp):
ATAAGTGTTAGCTAATTCGGCATAAGAGTATAAGTGTT
Found at i:82919125 original size:42 final size:42
Alignment explanation
Indices: 82919078--82919209 Score: 214
Period size: 42 Copynumber: 3.2 Consensus size: 42
82919068 GCTCTCGATA
82919078 TAATATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGG
82919120 T-A-ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGG
* * *
82919160 TAATATATATATCCGGGTTAAATCCCGCATGCTTAGTGCTGG
1 TAATATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGG
*
82919202 TACTATAT
1 TAATATAT
82919210 CCAGACTTAG
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 39 0.46
41 2 0.02
42 43 0.51
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGG
Found at i:82919126 original size:40 final size:40
Alignment explanation
Indices: 82919082--82919209 Score: 202
Period size: 40 Copynumber: 3.1 Consensus size: 40
82919072 TCGATATAAT
82919082 ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTA
1 ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTA
82919122 ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAA
1 ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGT-A
* * *
82919163 TATATATATCCGGGTTAAATCCCGCATGCTTAGTGCTGGTA
1 -ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTA
*
82919204 CTATAT
1 ATATAT
82919210 CCAGACTTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 44 0.54
41 2 0.02
42 36 0.44
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.34
Consensus pattern (40 bp):
ATATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTA
Found at i:82920131 original size:18 final size:17
Alignment explanation
Indices: 82920101--82920161 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
82920091 AAGAATCTGT
82920101 AGAAAAAGCAAAAGAAAA
1 AGAAAAAG-AAAAGAAAA
*
82920119 AGAACAAGAAAA-AAAGA
1 AGAAAAAGAAAAGAAA-A
* *
82920136 TTGAAAAAGAAAAAAGAAA
1 -AGAAAAAGAAAAGA-AAA
82920155 AGAAAAA
1 AGAAAAA
82920162 CGAGAAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 3 0.09
17 5 0.14
18 23 0.66
19 2 0.06
20 2 0.06
ACGTcount: A:0.77, C:0.03, G:0.16, T:0.03
Consensus pattern (17 bp):
AGAAAAAGAAAAGAAAA
Found at i:82920142 original size:36 final size:37
Alignment explanation
Indices: 82920102--82920172 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
82920092 AGAATCTGTA
* *
82920102 GAAAAAG-CAAAAGAAAAAGAACAA-GAAAAAAAGATT
1 GAAAAAGAAAAAAG-AAAAGAAAAACGAAAAAAAGATT
*
82920138 GAAAAAGAAAAAAGAAAAGAAAAACGAGAAAAAGA
1 GAAAAAGAAAAAAGAAAAGAAAAACGAAAAAAAGA
82920173 AAGGAAGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 16 0.53
37 14 0.47
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.03
Consensus pattern (37 bp):
GAAAAAGAAAAAAGAAAAGAAAAACGAAAAAAAGATT
Found at i:82920187 original size:21 final size:20
Alignment explanation
Indices: 82920138--82920174 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82920128 AAAAAAGATT
82920138 GAAAAA-GA-AAAAAGAAAA
1 GAAAAACGAGAAAAAGAAAA
82920156 GAAAAACGAGAAAAAGAAA
1 GAAAAACGAGAAAAAGAAA
82920175 GGAAGAAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (20 bp):
GAAAAACGAGAAAAAGAAAA
Found at i:82925026 original size:27 final size:26
Alignment explanation
Indices: 82924991--82925092 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
82924981 AGCATGGATG
* *
82924991 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
82925017 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
82925045 CTAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
82925072 CCAGATCAGATAATTGTGGCA
1 CCAGAACAGATAA-TGTGGCA
82925093 AGTCCAAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.09
27 43 0.66
28 16 0.25
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:82925788 original size:24 final size:24
Alignment explanation
Indices: 82925761--82925807 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
82925751 CTAGATTTCC
**
82925761 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
82925785 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
82925808 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:82932097 original size:27 final size:26
Alignment explanation
Indices: 82932062--82932173 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
82932052 AGCATGGCTG
* *
82932062 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
82932088 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
82932116 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
82932143 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
82932170 CCAG
1 CCAG
82932174 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:82932154 original size:54 final size:54
Alignment explanation
Indices: 82932062--82932173 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
82932052 AGCATGGCTG
* *
82932062 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
82932116 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
82932170 CCAG
1 CCAG
82932174 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:82933618 original size:24 final size:24
Alignment explanation
Indices: 82933591--82933661 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
82933581 CTAGATTTCC
**
82933591 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
82933615 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
82933639 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
82933662 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:82936405 original size:43 final size:43
Alignment explanation
Indices: 82936357--82936467 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 43
82936347 TCCTAGATAT
* *
82936357 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCATACAA
1 GGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACAA
* ** * * * *
82936400 GGTCTTACACGAAATCA-AAATACAATGCCAATGTCCTAGACAT
1 GGTCTTACATGTTATCACATAT-CGATGCCAATGTCCCAGACAA
82936443 GGTCTTACAT-TTAATCACATATCGA
1 GGTCTTACATGTT-ATCACATATCGA
82936468 GTCGATGCCA
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
42 3 0.06
43 45 0.88
44 3 0.06
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACAA
Found at i:82936496 original size:47 final size:49
Alignment explanation
Indices: 82936424--82936645 Score: 163
Period size: 50 Copynumber: 4.6 Consensus size: 49
82936414 TCAAAATACA
* * * *
82936424 ATGCCAATGTCCTAGACATGGTCTTACATTTAATCAC-ATATCGA-GTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACTGAATCACTATATCGAGGCCG
* * *
82936472 ATGCCATGTCCCAGACATGATCTTACACTGACTCTCTTATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAATCAC-TATATCGAGGCCG
* * * ** * * * *
82936522 ATGCTATATCCCAGACATGGTCTTACACCGGCTCTCCTCTTTTCGTA--CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAATC-ACT-ATATCG-AGGCCG
* *
82936572 ATGCAATGTCCCAGACATGGTCTTACACTG-A-CAC-ATATC-AAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAATCACTATATCGAGGCCG
* *
82936617 AGGCCATGTCCTAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
82936646 AGCTCACATG
Statistics
Matches: 139, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
45 31 0.22
47 26 0.19
48 6 0.04
49 7 0.05
50 62 0.45
51 5 0.04
52 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGAATCACTATATCGAGGCCG
Found at i:82939581 original size:44 final size:44
Alignment explanation
Indices: 82939516--82939602 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
82939506 TTGATATCTC
* * *
82939516 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGACAGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACAGA
* *
82939560 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACAG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACAG
82939603 TTAAGGATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACAGA
Found at i:82939790 original size:47 final size:47
Alignment explanation
Indices: 82939739--82939859 Score: 188
Period size: 47 Copynumber: 2.6 Consensus size: 47
82939729 GCATTGGCAA
*
82939739 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATTGCATTTGGT
1 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
* *
82939786 AAGACAAGGATACCACGTAAGATCATGTTTGGAACATGGCATTTGGT
1 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
* **
82939833 AAGATAAGGATTTCATGTAAGACCATG
1 AAGACAAGGATACCATGTAAGACCATG
82939860 CCGAGGCATG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
Found at i:82939967 original size:55 final size:54
Alignment explanation
Indices: 82939846--82940031 Score: 207
Period size: 55 Copynumber: 3.4 Consensus size: 54
82939836 ATAAGGATTT
* * * * * *
82939846 CATGTAAGACCATGCCGAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC
*
82939900 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATAC
* * *
82939955 CATGTAAGACCATG-CTAAGGCATGGTATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC
** *
82940008 CACATAAGATCATGTCAAGACATG
1 CATGTAAGACCATGTCAAGACATG
82940032 ACAATGGTAA
Statistics
Matches: 112, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.04
53 27 0.24
54 36 0.32
55 41 0.37
56 4 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC
Found at i:82942739 original size:16 final size:17
Alignment explanation
Indices: 82942707--82942739 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
82942697 TTGACAATAA
82942707 GATCTGTATGATGTTAAT
1 GATCTGTAT-ATGTTAAT
82942725 GATCTGTAT-TGTTAA
1 GATCTGTATATGTTAA
82942740 CTATTGCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.06, G:0.21, T:0.45
Consensus pattern (17 bp):
GATCTGTATATGTTAAT
Found at i:82943704 original size:37 final size:37
Alignment explanation
Indices: 82943663--82943735 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
82943653 CCAAGTTGTC
82943663 TGATTGTTAAGGTCCTCATTGTATGAAGTTTAGTTTT
1 TGATTGTTAAGGTCCTCATTGTATGAAGTTTAGTTTT
*
82943700 TGATTGTTAAGGTTCTCATTGTATGAAGTTTAGTTT
1 TGATTGTTAAGGTCCTCATTGTATGAAGTTTAGTTT
82943736 GGCTTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.49
Consensus pattern (37 bp):
TGATTGTTAAGGTCCTCATTGTATGAAGTTTAGTTTT
Found at i:82946258 original size:44 final size:44
Alignment explanation
Indices: 82946193--82946277 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
82946183 TTGATATCTC
* *
82946193 AAATTCCATGGTTGTACCATGGCAATTAAGG-GAGAATTGACGGA
1 AAATTCCATGGTTATAACATGGCAATTAAGGAG-GAATTGACGGA
*
82946237 AAATTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGAC
1 AAATTCCATGGTT-ATAACATGGCAATTAAGGAGGAATTGAC
82946278 TGTTAAGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 3 0.08
44 32 0.89
45 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (44 bp):
AAATTCCATGGTTATAACATGGCAATTAAGGAGGAATTGACGGA
Found at i:82946332 original size:45 final size:44
Alignment explanation
Indices: 82946281--82946503 Score: 151
Period size: 47 Copynumber: 4.8 Consensus size: 44
82946271 AATTGACTGT
82946281 TAAGGATGCCATGTAAGACCATGTCAAGACATGGCATCGGTAAGGA
1 TAAGGAT-CCATGTAAGACCATGTCAAGACATGGCATCGGTAA-GA
** * *
82946327 -AAGGATCTTGTGTAAGACCATGTCAAGACATGGCATCGGCATTGA
1 TAAGGATC-CATGTAAGACCATGTCAAGACATGGCATCGGTA-AGA
** ** *
82946372 TTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTGGCATAAGA
1 -TAAGGA-TCCATGTAAGACCATGTCAAGACATGGCATCGG--TAAGA
* *** *
82946420 CAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGA
1 TAAGGAT-CCATGTAAGACCATGTCAAG-ACATGGCA-TCGGTAAGA
* * * * * *
82946467 TAATGATATCATGTAAGGCCATGCCAAGGCAGGGCAT
1 TAAGGAT-CCATGTAAGACCATGTCAAGACATGGCAT
82946504 TGATAAATTC
Statistics
Matches: 136, Mismatches: 31, Indels: 21
0.72 0.16 0.11
Matches are distributed among these distances:
44 1 0.01
45 39 0.29
46 7 0.05
47 74 0.54
48 10 0.07
49 5 0.04
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (44 bp):
TAAGGATCCATGTAAGACCATGTCAAGACATGGCATCGGTAAGA
Found at i:82946400 original size:47 final size:46
Alignment explanation
Indices: 82946281--82946443 Score: 154
Period size: 47 Copynumber: 3.5 Consensus size: 46
82946271 AATTGACTGT
* *
82946281 TAAGGATGCCATGTAAGACCATGTCAAGACATGGCATCGGTA-AGGA
1 TAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCATA-GA
** *
82946327 -AAGGAT-CTTGTGTAAGACCATGTCAAGACATGGCATCGGCATTGA
1 TAAGGATAC-CATGTAAGACCATGTCAAGACATGGCATCGGCATAGA
** ** *
82946372 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCATAAGA
1 -TAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATCGGCAT-AGA
*
82946420 CAAGGATACCATGTAAGACCATGT
1 TAAGGATACCATGTAAGACCATGT
82946444 TTGGAACATG
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
44 1 0.01
45 38 0.40
46 1 0.01
47 51 0.54
48 4 0.04
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (46 bp):
TAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCATAGA
Found at i:82946651 original size:53 final size:54
Alignment explanation
Indices: 82946471--82946675 Score: 162
Period size: 53 Copynumber: 3.8 Consensus size: 54
82946461 GTAAGATAAT
* * * * *
82946471 GATATCATGTAAGGCCATGCCAAGGCAGGGCATTGATAAATTCTATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAG
* *** *** * * *
82946525 GAAATTGTGTAAGACCACATCAAGACATGGCATTGATGAGTTACTATAAGACAAAT
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC-AAG
* * * *
82946581 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAG
* * * * *
82946633 GATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTTC
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
82946676 AAAAAGGAAA
Statistics
Matches: 116, Mismatches: 32, Indels: 7
0.75 0.21 0.05
Matches are distributed among these distances:
52 3 0.03
53 40 0.34
54 32 0.28
55 38 0.33
56 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAG
Found at i:82955041 original size:67 final size:67
Alignment explanation
Indices: 82954933--82955069 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 67
82954923 CTATTTGAAT
* **
82954933 TCATAGGATACGAGTGACTTGTGACTAGGGTTTTCGATTTGGTCGAGCTCCTGCATTTGTTGCGG
1 TCATAGGATACGAGTGACTTGTCACTAGGGTTACCGATTTGGTCGAGCTCCTGCATTTGTTGCGG
82954998 AC
66 AC
*
82955000 TCATAGGATACGAGTGACTTGTCACTAGGGTTACCGATTTGGTTGAGCTCCTGCATTTGTTGCGG
1 TCATAGGATACGAGTGACTTGTCACTAGGGTTACCGATTTGGTCGAGCTCCTGCATTTGTTGCGG
82955065 AC
66 AC
82955067 TCA
1 TCA
82955070 CCACAGCTCA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (67 bp):
TCATAGGATACGAGTGACTTGTCACTAGGGTTACCGATTTGGTCGAGCTCCTGCATTTGTTGCGG
AC
Found at i:82955196 original size:23 final size:23
Alignment explanation
Indices: 82955133--82955207 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
82955123 CAGCTAATTG
* *
82955133 GAGCTCACCGTTTTAGCTCG-TA
1 GAGCTTACCGTTTCAGCTCGATA
* *
82955155 TGATCTTACTG-TTCAGCTCGATA
1 -GAGCTTACCGTTTCAGCTCGATA
*
82955178 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCGATA
82955201 GAGCTTA
1 GAGCTTA
82955208 TTGATCATCA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
22 16 0.37
23 27 0.63
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCGATA
Found at i:82962216 original size:40 final size:40
Alignment explanation
Indices: 82962070--82962253 Score: 193
Period size: 40 Copynumber: 4.6 Consensus size: 40
82962060 ACTCGATATC
* * * *
82962070 TCGCACACTAAGTGCCAATACATAGTCGAAGCTATTATAATT
1 TCGCACACTAAGTGCC-ATATATAGCCGAAGCTA-TCTAAGT
* *
82962112 TCGCACACTAAGTGCCTTACATAGCCGAAGCTATCTAAGT
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTAAGT
82962152 CTCGCACACCT---TGCCATATATAGCCGAAGCTATTCTGAA-T
1 -TCGCACA-CTAAGTGCCATATATAGCCGAAGCTA-TCT-AAGT
82962192 T-GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA--
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCT--AAGT
82962231 TCGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
82962254 TATCTGAATC
Statistics
Matches: 127, Mismatches: 6, Indels: 20
0.83 0.04 0.13
Matches are distributed among these distances:
37 2 0.02
38 5 0.04
39 24 0.19
40 54 0.43
41 24 0.19
42 18 0.14
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTAAGT
Found at i:82962453 original size:21 final size:22
Alignment explanation
Indices: 82962427--82962467 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82962417 ATCCTAATCC
*
82962427 GAATTCTGTTTTT-CTTGATTT
1 GAATTCTATTTTTGCTTGATTT
82962448 GAATTCTATTTTTGCTTGAT
1 GAATTCTATTTTTGCTTGAT
82962468 CTAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.17, C:0.10, G:0.15, T:0.59
Consensus pattern (22 bp):
GAATTCTATTTTTGCTTGATTT
Found at i:82968901 original size:25 final size:25
Alignment explanation
Indices: 82968873--82968921 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
82968863 TTATAATATG
* * *
82968873 AAAAATGACTGTTTTGCCCCTAGGT
1 AAAAATGACCGTTATACCCCTAGGT
82968898 AAAAATGACCGTTATACCCCTAGG
1 AAAAATGACCGTTATACCCCTAGG
82968922 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (25 bp):
AAAAATGACCGTTATACCCCTAGGT
Found at i:82968994 original size:20 final size:21
Alignment explanation
Indices: 82968958--82969005 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
82968948 ATTTTGATAT
*
82968958 ACATGATGTGATATGATATGC
1 ACATGATATGATATGATATGC
82968979 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
*
82968999 GCATGAT
1 ACATGAT
82969006 GTATTCATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:82969082 original size:26 final size:25
Alignment explanation
Indices: 82969053--82969120 Score: 91
Period size: 26 Copynumber: 2.7 Consensus size: 25
82969043 GAGAAAGTGC
* *
82969053 AAAAGGGATATGCCCCAATTTACCGA
1 AAAAGGGCTTTGCCCCAATTTACC-A
* *
82969079 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAATTTACCA
82969104 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
82969121 GTTATTATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
25 18 0.47
26 20 0.53
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAATTTACCA
Found at i:82969121 original size:25 final size:26
Alignment explanation
Indices: 82969053--82969123 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
82969043 GAGAAAGTGC
* * *
82969053 AAAAGGGATATGCCCCAATTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACCGA
*
82969079 AAAAGGGCTTTGCCCCAGTTTATC-A
1 AAAAGGGCTTTGCCCCAGTTTACCGA
82969104 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82969124 ATTATAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 21 0.51
26 20 0.49
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTACCGA
Found at i:82969382 original size:31 final size:29
Alignment explanation
Indices: 82969344--82969427 Score: 109
Period size: 29 Copynumber: 2.8 Consensus size: 29
82969334 CGTTTACAGT
*
82969344 AAAGGCTTCAGCCCAGTGATATGATTT-ATG
1 AAAGGCTTCGGCCCAGT-ATATG-TTTAATG
82969374 AAAAGGCTTCGGCCCAGTA-ATCGTTTAATG
1 -AAAGGCTTCGGCCCAGTATAT-GTTTAATG
82969404 AAAGGCTTCGGCCCAGTATATGTT
1 AAAGGCTTCGGCCCAGTATATGTT
82969428 GAGATTGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 26 0.53
30 7 0.14
31 16 0.33
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (29 bp):
AAAGGCTTCGGCCCAGTATATGTTTAATG
Found at i:82971507 original size:927 final size:927
Alignment explanation
Indices: 82969714--82972497 Score: 5498
Period size: 927 Copynumber: 3.0 Consensus size: 927
82969704 TATTTTTAAT
82969714 AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
1 AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
*
82969779 TGTTTTCAAAATAACACAACGTCACGATTATTTGATTTATCAAAGATATCCACTCAAATAAATTT
66 TGTTTTCAAAATAACACAACGTCACGATTATTTGGTTTATCAAAGATATCCACTCAAATAAATTT
82969844 CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
131 CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
*
82969909 CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATAGCTACCTGGTGCACAGCT
196 CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACAGCT
82969974 TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
261 TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
82970039 TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
326 TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
82970104 GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
391 GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
82970169 TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACATTT
456 TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACATTT
82970234 TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
521 TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
82970299 ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
586 ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
82970364 TACTTTAGATAGTTTAAAGCTATAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCG
651 TACTTTAGATAGTTTAAAGCTATAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCG
82970429 AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
716 AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
82970494 TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
781 TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
82970559 GCGGACGTGGTCGCGAAATGGTGCAAGTAGAATCTTCATCCTCAGGGCATAGGCCAACTGAGGAG
846 GCGGACGTGGTCGCGAAATGGTGCAAGTAGAATCTTCATCCTCAGGGCATAGGCCAACTGAGGAG
82970624 GCATTCGTGCCACAAGC
911 GCATTCGTGCCACAAGC
82970641 AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
1 AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
82970706 TGTTTTCAAAATAACACAACGTCACGATTATTTGGTTTATCAAAGATATCCACTCAAATAAATTT
66 TGTTTTCAAAATAACACAACGTCACGATTATTTGGTTTATCAAAGATATCCACTCAAATAAATTT
82970771 CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
131 CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
82970836 CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACAGCT
196 CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACAGCT
82970901 TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
261 TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
82970966 TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
326 TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
82971031 GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
391 GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
82971096 TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACATTT
456 TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACATTT
82971161 TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
521 TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
82971226 ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
586 ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
82971291 TACTTTAGATAGTTTAAAGCTATAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCG
651 TACTTTAGATAGTTTAAAGCTATAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCG
82971356 AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
716 AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
82971421 TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
781 TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
82971486 GCGGACGTGGTCGCGAAATGGTGCAAGTAGAATCTTCATCCTCAGGGCATAGGCCAACTGAGGAG
846 GCGGACGTGGTCGCGAAATGGTGCAAGTAGAATCTTCATCCTCAGGGCATAGGCCAACTGAGGAG
82971551 GCATTCGTGCCACAAGC
911 GCATTCGTGCCACAAGC
82971568 AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
1 AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
*
82971633 TGTTTTCAAAATAACACAACGTCACGATTATTTCGTTTATCAAAGATATCCACTCAAATAAATTT
66 TGTTTTCAAAATAACACAACGTCACGATTATTTGGTTTATCAAAGATATCCACTCAAATAAATTT
82971698 CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
131 CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
82971763 CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACAGCT
196 CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACAGCT
82971828 TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
261 TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
82971893 TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
326 TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
82971958 GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
391 GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
82972023 TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACA-TT
456 TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACATTT
82972087 TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
521 TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
82972152 ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
586 ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
* *
82972217 TACTTTAGATAGTTTAAAGCTGTAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCA
651 TACTTTAGATAGTTTAAAGCTATAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCG
82972282 AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
716 AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
82972347 TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
781 TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
* *
82972412 GCGGACGTGGTCGCGAAATGGTGCAAGCAGAATCTTCATCCTCAAGGCATAGGCCAACTGAGGAG
846 GCGGACGTGGTCGCGAAATGGTGCAAGTAGAATCTTCATCCTCAGGGCATAGGCCAACTGAGGAG
82972477 GCATTCGTGCCACAAGC
911 GCATTCGTGCCACAAGC
82972494 AACT
1 AACT
82972498 AAGACTGGGT
Statistics
Matches: 1850, Mismatches: 7, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
926 409 0.22
927 1441 0.78
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (927 bp):
AACTTTAAACTTTCTGATAACAATTCAAATGGGCTAGACTCAGGGCGCGTTTTCAAAATGATATT
TGTTTTCAAAATAACACAACGTCACGATTATTTGGTTTATCAAAGATATCCACTCAAATAAATTT
CAACTCGTTATAACCAAGTGTGGCAATGGTTGTGGGCATGTCTAGGATTGGATCCAATCGAAGAG
CTTGGTACTTAAGCAGCCTTCATGGCTCACCTCCTCTGTTTCGGATACCTACCTGGTGCACAGCT
TCCATTCACTTTGTTAGCTTAACAAAAGTCAGTTATTTAAAACACTAAAATGAAAAGTGGATTTT
TAACTTCAATGTGGCACGTCGAATTCAGCCATAACGTCTGGGCCGGGTTTGGGGTGTTACATTTA
GTGGTATCAGAGCCAAGTTGTAACAACTCAGTTGTGGGTTTCTAAACGCATTTTAAATCAAGAAT
TTCAAAACAAAGGTATTTTTAAATTAATTTTTAGGAAATTTCTATTTTTGTGACCAAATACATTT
TTTTGTTTTAAATGGTTTTGAAGAGAAAGGTGGCACACTGAATCCCCGGCACCAAGTCTTTAAGT
ATACTTTCTTTTACATTATGTGATATTGATATGATGCTATGAATAGAACTGAGACCCTGCTATGA
TACTTTAGATAGTTTAAAGCTATAAAATGGTGGGAATGAGACTGCAGCTAGGTTACGACGTTGCG
AAAACAATTCTTAAACTGTTATATTTCCATAAGACATCTCGTAATAAACAATTGAAATATTAAAC
TAATGTCATAAAATTCGTAATCAGATAATTTGATATGAGTACGAGAGGAACTCGAGGACGGGGCC
GCGGACGTGGTCGCGAAATGGTGCAAGTAGAATCTTCATCCTCAGGGCATAGGCCAACTGAGGAG
GCATTCGTGCCACAAGC
Found at i:82975822 original size:58 final size:58
Alignment explanation
Indices: 82975732--82975852 Score: 226
Period size: 58 Copynumber: 2.1 Consensus size: 58
82975722 TGTGAAATTC
82975732 ATAATTGGAGTGTGTAAATGGGCTTATGGAAGGCCCATGTAATGGCCAAAACCCGGTA
1 ATAATTGGAGTGTGTAAATGGGCTTATGGAAGGCCCATGTAATGGCCAAAACCCGGTA
*
82975790 ATAATTGGAGTGTGTAAATGGGCTTATGGAAGGCCCATGTGATGGCCAAAACCCGGTA
1 ATAATTGGAGTGTGTAAATGGGCTTATGGAAGGCCCATGTAATGGCCAAAACCCGGTA
82975848 A-AATT
1 ATAATT
82975853 TTTGAATTTT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (58 bp):
ATAATTGGAGTGTGTAAATGGGCTTATGGAAGGCCCATGTAATGGCCAAAACCCGGTA
Found at i:82977509 original size:11 final size:10
Alignment explanation
Indices: 82977477--82977522 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
82977467 CATGAGATTT
82977477 TGATAT-ACA
1 TGATATGACA
*
82977486 TGATTTGACA
1 TGATATGACA
82977496 TGATATGCACA
1 TGATATG-ACA
*
82977507 TGATATG-TA
1 TGATATGACA
82977516 TGATATG
1 TGATATG
82977523 CGCATGATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 13 0.41
10 9 0.28
11 10 0.31
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:82977606 original size:25 final size:26
Alignment explanation
Indices: 82977578--82977649 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
82977568 GAGGAAGTGC
* *
82977578 AAAAGGGCTATGCCCTAGTTTACCGAA
1 AAAAGGGCTTTGCCCCAGTTTACC-AA
* *
82977605 AAAAGGTCTTTGCCCCAGTTTATC-A
1 AAAAGGGCTTTGCCCCAGTTTACCAA
82977630 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82977650 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 20 0.50
27 20 0.50
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTACCAA
Found at i:82977662 original size:24 final size:23
Alignment explanation
Indices: 82977604--82977676 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 23
82977594 AGTTTACCGA
82977604 AAAAAGGTCTTTGCCCCAGTTTATC
1 AAAAAGG-CTTTGCCCCAG-TTATC
*
82977629 AAAAAGGGCTTTGCCCCAGTTATT
1 AAAAA-GGCTTTGCCCCAGTTATC
**
82977653 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAA-AGGCTTTGCC-CCAGTTAT
82977677 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 15 0.36
25 25 0.60
26 2 0.05
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAAGGCTTTGCCCCAGTTATC
Found at i:82977943 original size:29 final size:30
Alignment explanation
Indices: 82977871--82977952 Score: 96
Period size: 29 Copynumber: 2.7 Consensus size: 30
82977861 CGTTTACAGT
* *
82977871 AAAGGCTTCAGCCCAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGT-ATATCAATTATGA
* *
82977902 AAAGGCTTTGGCCCAGTA-ATCATTTAATG-
1 AAAGGCTTCGGCCCAGTATATCAATT-ATGA
82977931 AAAGGCTTCGGCCCAGTATATC
1 AAAGGCTTCGGCCCAGTATATC
82977953 TCGAGACTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 22 0.50
30 7 0.16
31 15 0.34
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATCAATTATGA
Found at i:82980834 original size:48 final size:48
Alignment explanation
Indices: 82980760--82980856 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
82980750 AATATAAATG
*
82980760 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
82980808 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
82980856 T
1 T
82980857 ATTGTCGCCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:82981040 original size:37 final size:37
Alignment explanation
Indices: 82980990--82981061 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
82980980 GAAATATATT
*
82980990 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
82981027 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
82981062 TCGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:82986033 original size:44 final size:41
Alignment explanation
Indices: 82985977--82986128 Score: 128
Period size: 43 Copynumber: 3.6 Consensus size: 41
82985967 GATTTCGTAC
*
82985977 AAGACCACGTCTGGGACGTTGGCATCAATTTGTGATTTGTGTGT
1 AAGACCACGTCTGGGACGTTGGCATC-ATATGTGA-TT-TGTGT
* * * * *
82986021 AAGACCATGTCTGGGACATTGGCATCGTATATGAGCTTGTGT
1 AAGACCACGTCTGGGACGTTGGCATCATATGTGA-TTTGTGT
* * **
82986063 AAGACC-CTATCTGGGACAG-TGGCATCGAGATGTGATTACATGT
1 AAGACCAC-GTCTGGGAC-GTTGGCATC-ATATGTGATT-TGTGT
82986106 AAGACCACGTCTGGGACGTTGGC
1 AAGACCACGTCTGGGACGTTGGC
82986129 GTTGTACGAG
Statistics
Matches: 85, Mismatches: 17, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 28 0.33
43 32 0.38
44 25 0.29
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (41 bp):
AAGACCACGTCTGGGACGTTGGCATCATATGTGATTTGTGT
Found at i:82988437 original size:39 final size:39
Alignment explanation
Indices: 82988343--82988446 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
82988333 GAGGAATTGT
* **
82988343 ATCCGGGCTTAAAGACCCGCAGGCTATATCTGGAATGTT
1 ATCCGGGCTTAAAGACCCGCAGGCTATATCTAGAATGCC
*
82988382 ATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTAGAATGCC
1 ATCCGGGCTTAAAGACCCGCAGGCTAT-AT-CTAGAATGCC
* *
82988422 ATCCGGGC-TAGAGACCCCCAGGCTA
1 ATCCGGGCTTAAAGACCCGCAGGCTA
82988447 CGAGCTGGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.02
39 40 0.71
40 15 0.27
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (39 bp):
ATCCGGGCTTAAAGACCCGCAGGCTATATCTAGAATGCC
Found at i:82990402 original size:27 final size:27
Alignment explanation
Indices: 82990371--82990548 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82990361 TAAATTGTAC
82990371 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82990398 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82990424 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82990452 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82990480 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82990507 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82990534 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82990549 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82990485 original size:82 final size:81
Alignment explanation
Indices: 82990372--82990527 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82990362 AAATTGTACA
* *
82990372 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82990436 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82990453 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82990518 TGCGAGTTGA
65 TGCGAATTGA
82990528 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82990539 original size:82 final size:81
Alignment explanation
Indices: 82990368--82990548 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82990358 GATTAAATTG
* *
82990368 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82990433 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82990449 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82990513 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82990531 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82990549 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83002347 original size:39 final size:40
Alignment explanation
Indices: 83002302--83002445 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
83002292 GCTCCTCGTT
* * *
83002302 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
83002342 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
83002381 CGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
83002421 CAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGG
83002446 CGGGCTTAGC
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 35 0.38
40 56 0.62
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:83002500 original size:39 final size:39
Alignment explanation
Indices: 83002446--83002526 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
83002436 CTTAACCCGG
83002446 CGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTT
1 CGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTT
83002485 CGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTT
1 CGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTT
83002524 CGG
1 CGG
83002527 ATCTTAGTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
CGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTT
Found at i:83006170 original size:40 final size:39
Alignment explanation
Indices: 83006072--83006211 Score: 172
Period size: 40 Copynumber: 3.5 Consensus size: 39
83006062 TCCTCGTTCA
* * *
83006072 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
*
83006111 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* * *
83006150 GAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* * *
83006190 AAAGGCCTTCGGGGCTTAACCC
1 -AATGCCTTCGGGACATAACCC
83006212 AGGGCTTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 35 0.39
40 54 0.61
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
Found at i:83006212 original size:40 final size:40
Alignment explanation
Indices: 83006070--83006331 Score: 197
Period size: 39 Copynumber: 6.3 Consensus size: 40
83006060 GCTCCTCGTT
* * * * ** * *
83006070 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGGCTTAACCCAGAATTAGTATCTCGCA
* * * * * *
83006110 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGGCTTAACCCAGAATTAGTATCTCGCA
* * *
83006149 CGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCAGAATTAGTATCTCGCA
*
83006189 CAAAGGCCTTCGGGGCTTAACCCAGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAA-CC----C--A-----GAATTAGTATCTCGCA
* *
83006241 CAAATGCCTTC-GGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGGCTTAACCCAGAATTAGTATCTCGCA
* *
83006280 CAAATGCCTTC-GGGCTTAGCCCAGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGGCTTAACCCAGAATTAGTATCTCGCA
83006319 CAAATGCCTTCGG
1 CAAATGCCTTCGG
83006332 ATCTTAGTCC
Statistics
Matches: 191, Mismatches: 17, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
39 99 0.52
40 53 0.28
41 2 0.01
45 1 0.01
46 1 0.01
47 1 0.01
50 2 0.01
51 7 0.04
52 25 0.13
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGGCTTAACCCAGAATTAGTATCTCGCA
Found at i:83006292 original size:91 final size:91
Alignment explanation
Indices: 83006129--83006303 Score: 253
Period size: 91 Copynumber: 1.9 Consensus size: 91
83006119 CGGGACATAA
* * *
83006129 CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCACAAAG
1 CCCGGAATTAATAACTCGCACAAATGCCTTCGGGACTTAACCCAGAATTAGTATCTCGCACAAAG
83006194 GCCTTCGGGGCTTAACCCAGGGCTTAG
66 GCCTTC-GGGCTTAACCCAGGGCTTAG
* * * * *
83006221 CCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAAT
1 CCCGGAATTAATAACTCGCACAAATGCCTTCGGGACTTAACCCAGAATTAGTATCTCGCACAAAG
*
83006285 GCCTTCGGGCTTAGCCCAG
66 GCCTTCGGGCTTAACCCAG
83006304 AATTAGTATC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 12 0.16
91 32 0.43
92 30 0.41
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (91 bp):
CCCGGAATTAATAACTCGCACAAATGCCTTCGGGACTTAACCCAGAATTAGTATCTCGCACAAAG
GCCTTCGGGCTTAACCCAGGGCTTAG
Found at i:83006367 original size:78 final size:78
Alignment explanation
Indices: 83006213--83006380 Score: 218
Period size: 78 Copynumber: 2.1 Consensus size: 78
83006203 GCTTAACCCA
* *
83006213 GGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCG
1 GGGCTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAG
83006278 CACAAATGCCTTC
66 CACAAATGCCTTC
* * *
83006291 GGGCTTAGCCCAGAATTAGTATCTTGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-C
1 GGGCTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC
83006354 TTAGCAC-AA-GCCTTC
63 -TAGCACAAATGCCTTC
83006369 GGGACTTAGCCC
1 GGG-CTTAGCCC
83006381 GGACATCATT
Statistics
Matches: 80, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
78 48 0.60
79 23 0.29
80 9 0.11
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (78 bp):
GGGCTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAG
CACAAATGCCTTC
Found at i:83008948 original size:47 final size:47
Alignment explanation
Indices: 83008847--83008950 Score: 118
Period size: 47 Copynumber: 2.2 Consensus size: 47
83008837 CACAATCGAT
* *
83008847 AAATACCTATACCATAGCCCATAGCCAAATCAAGGTAACTTATCCCA
1 AAATACCTATACCATAGCCCATAGCCAAATCAAGGGAACTCATCCCA
* * * * * * * *
83008894 GAGTACCTATACCGTGGCCCGTAGCCAAATCAAGGGAGCTCCTCTCA
1 AAATACCTATACCATAGCCCATAGCCAAATCAAGGGAACTCATCCCA
83008941 AAATACCTAT
1 AAATACCTAT
83008951 GTTGTAATAT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.21
Consensus pattern (47 bp):
AAATACCTATACCATAGCCCATAGCCAAATCAAGGGAACTCATCCCA
Found at i:83009935 original size:93 final size:93
Alignment explanation
Indices: 83009776--83009946 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
83009766 GGATGGTTGA
* *
83009776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
83009841 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
83009869 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
83009934 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
83009947 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:83009949 original size:46 final size:46
Alignment explanation
Indices: 83009780--83009951 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
83009770 GGTTGAGCAT
* * *
83009780 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
83009826 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
83009871 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
83009919 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83009952 GGGGCGGTGT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 2 0.02
46 59 0.57
47 28 0.27
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:83011442 original size:40 final size:40
Alignment explanation
Indices: 83011342--83011513 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
83011332 GCTCCTCGTT
* * *
83011342 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
83011382 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
83011421 CGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
83011461 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
83011501 CAAATGCCTTCGG
1 CAAATGCCTTCGG
83011514 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:83018203 original size:33 final size:35
Alignment explanation
Indices: 83018144--83018210 Score: 120
Period size: 33 Copynumber: 2.0 Consensus size: 35
83018134 TTCCGCCGTC
83018144 TGTCATTTGGCCACAATATATATATACACATCTCT
1 TGTCATTTGGCCACAATATATATATACACATCTCT
83018179 TGTCATTTGGCCAC-A-ATATATATACACATCTC
1 TGTCATTTGGCCACAATATATATATACACATCTC
83018211 ATACATATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 17 0.53
34 1 0.03
35 14 0.44
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (35 bp):
TGTCATTTGGCCACAATATATATATACACATCTCT
Found at i:83018259 original size:46 final size:46
Alignment explanation
Indices: 83018205--83018295 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
83018195 TATATATACA
* * *
83018205 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
83018251 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
83018296 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:83018338 original size:22 final size:22
Alignment explanation
Indices: 83018312--83018387 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
83018302 ATCCACGTTC
83018312 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
83018334 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
83018359 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
83018381 ATCACAT
1 ATCACAT
83018388 ATATACATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:83018340 original size:47 final size:47
Alignment explanation
Indices: 83018275--83018553 Score: 306
Period size: 47 Copynumber: 5.9 Consensus size: 47
83018265 TTCGCATTAA
* ** ** * *
83018275 CCATTCGGCTTTCCCACATATATACACATCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* * * *
83018322 CCATTCTGCCTTATCACATGTATGCATGTTCACATTTATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
83018369 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* * * * **
83018416 CCATTCGGTCTTATCACACAAATGCATGTTCACATTCATCACATTTT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* * * * *
83018463 CCATTCGGCCTTAGCACACAAATGCATGTTCACATTCATCACATTTG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* * * ** *
83018510 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
83018554 AAAATCCTAA
Statistics
Matches: 200, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 200 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
Found at i:83019687 original size:56 final size:56
Alignment explanation
Indices: 83019601--83019776 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
83019591 ACAAGGGATG
*
83019601 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
83019657 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
83019713 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAGGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
83019769 ATGGGCAA
1 ATGGGCAA
83019777 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:83021095 original size:40 final size:39
Alignment explanation
Indices: 83020905--83021088 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
83020895 CGAATGATGT
* * * * *
83020905 CCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
83020945 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
83020985 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83021023 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83021064 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83021089 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83021110 original size:79 final size:79
Alignment explanation
Indices: 83020957--83021121 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
83020947 GGACTAAGAT
* **
83020957 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
83021022 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83021036 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
83021099 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83021115 CCGAAGG
1 CCGAAGG
83021122 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83021635 original size:128 final size:129
Alignment explanation
Indices: 83021389--83021644 Score: 478
Period size: 128 Copynumber: 2.0 Consensus size: 129
83021379 TATACTTTTG
* *
83021389 TTGTGCTGGAATCCCTTGCTCAAAACTTACTAAGCATAAATTGCTTACTCTGTTTCTTTGTTTCT
1 TTGTGCTGGAATCCCTTGCTCAAAACTTACTAAGCACAAATTGCTTACTCCGTTTCTTTGTTTCT
*
83021454 CTGTTTTATAGATTTTGGCTCGTCAGCTATCGGACTCGGGATTTTTGGGAGTCGAAGTCCCCCC
66 CTGTTTTATAGATTTTGGCTCGTCAGCTATCGGACTCGGGATTTTTGGAAGTCGAAGTCCCCCC
83021518 TTGTGCTGGAAT-CCTTGCTCAAAACTTACTAAGCACAAATTGCTTACTCCGTTTCTTTGTTTCT
1 TTGTGCTGGAATCCCTTGCTCAAAACTTACTAAGCACAAATTGCTTACTCCGTTTCTTTGTTTCT
83021582 CTGTTTTATAGATTTTGGCTCGTCAGCTATCGGACTCGGGATTTTTGGAAGTCGAAGTCCCCC
66 CTGTTTTATAGATTTTGGCTCGTCAGCTATCGGACTCGGGATTTTTGGAAGTCGAAGTCCCCC
83021645 ACACTATCAA
Statistics
Matches: 124, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
128 112 0.90
129 12 0.10
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (129 bp):
TTGTGCTGGAATCCCTTGCTCAAAACTTACTAAGCACAAATTGCTTACTCCGTTTCTTTGTTTCT
CTGTTTTATAGATTTTGGCTCGTCAGCTATCGGACTCGGGATTTTTGGAAGTCGAAGTCCCCCC
Found at i:83022366 original size:83 final size:83
Alignment explanation
Indices: 83022227--83022387 Score: 297
Period size: 83 Copynumber: 1.9 Consensus size: 83
83022217 ATAGATTCCT
83022227 CTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCTCTGTGCAGGGAGATATCC
1 CTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCTCTGTGCAGGGAGATATCC
*
83022292 AATTCGTAATGCACAAGG
66 AAATCGTAATGCACAAGG
83022310 CTCTGAGTCTAGTTTCTATAGAAACAAAC-AGCATCAGTATTGAAGCTCTGTGCAGGGAGATATC
1 CTCTGAGTCTAGTTTCTATAGAAACAAACGA-CATCAGTATTGAAGCTCTGTGCAGGGAGATATC
83022374 CAAATCGTAATGCA
65 CAAATCGTAATGCA
83022388 TGAAGGTCAG
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
82 1 0.01
83 75 0.99
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (83 bp):
CTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCTCTGTGCAGGGAGATATCC
AAATCGTAATGCACAAGG
Found at i:83024776 original size:12 final size:13
Alignment explanation
Indices: 83024761--83024801 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
83024751 GAAACATTAA
83024761 CAGAACT-AGAAT
1 CAGAACTCAGAAT
83024773 CAGAA-TCAGAAT
1 CAGAACTCAGAAT
83024785 CAG-ACTCAGAAT
1 CAGAACTCAGAAT
83024797 CAGAA
1 CAGAA
83024802 TTAGGTGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.08
12 23 0.88
13 1 0.04
ACGTcount: A:0.49, C:0.20, G:0.17, T:0.15
Consensus pattern (13 bp):
CAGAACTCAGAAT
Found at i:83024777 original size:6 final size:6
Alignment explanation
Indices: 83024768--83024920 Score: 107
Period size: 6 Copynumber: 24.8 Consensus size: 6
83024758 TAACAGAACT
* * *
83024768 AGAATC AGAATC AGAATC AGACTC AGAATC AGAATT AGGTGAT- AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * *
83024817 AGAATT AGAATC AGTATC AGGTAA-C CGAATC AAAATC AGAATC AGGATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
* * *
83024866 AGGTAAT- AGAATC AAAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
83024916 AGAAT
1 AGAAT
83024921 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 21, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
5 9 0.08
6 90 0.79
7 9 0.08
8 6 0.05
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:83024818 original size:31 final size:31
Alignment explanation
Indices: 83024779--83024920 Score: 185
Period size: 31 Copynumber: 4.6 Consensus size: 31
83024769 GAATCAGAAT
* * * * *
83024779 CAGAATCAGACTCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* * *
83024810 TAGAATCAGAATTAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* *
83024841 CCGAATCAAAATCAGAATCAGGATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
83024872 TAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
83024903 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
83024921 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 96 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:83024860 original size:62 final size:62
Alignment explanation
Indices: 83024779--83024920 Score: 212
Period size: 62 Copynumber: 2.3 Consensus size: 62
83024769 GAATCAGAAT
* * * * * *
83024779 CAGAATCAGACTCAGAATCAGAATTAGGTGATAGAATCAGAATTAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAATAGAATCAAAATCAGAATCAGTATCAGGTAA
* *
83024841 CCGAATCAAAATCAGAATCAGGATCAGGTAATAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAATAGAATCAAAATCAGAATCAGTATCAGGTAA
83024903 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
83024921 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 71 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.20
Consensus pattern (62 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAATAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:83025115 original size:26 final size:27
Alignment explanation
Indices: 83025052--83025125 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
83025042 GCTCAGTTAT
* *
83025052 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
83025079 CAGATGTTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
83025105 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
83025126 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:83025320 original size:22 final size:22
Alignment explanation
Indices: 83025284--83025348 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
83025274 GCAAATACAT
* *
83025284 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
83025306 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
83025328 TTAACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
83025349 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:83025832 original size:27 final size:27
Alignment explanation
Indices: 83025775--83026023 Score: 356
Period size: 27 Copynumber: 9.3 Consensus size: 27
83025765 GGGGCAAAAT
* * * *
83025775 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83025801 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83025828 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83025855 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83025882 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83025909 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83025936 GGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83025963 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
**
83025990 GGTAATTCTACCCTACAGGGAAATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83026017 GGTAATT
1 GGTAATT
83026024 TTGTAAATCG
Statistics
Matches: 198, Mismatches: 24, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 15 0.08
27 183 0.92
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:83026047 original size:81 final size:81
Alignment explanation
Indices: 83025800--83026053 Score: 264
Period size: 81 Copynumber: 3.1 Consensus size: 81
83025790 CAAGGTATCT
* *
83025800 CGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATT-TT
*** * *
83025865 CCCTATAG-GGGTATTG
65 CTAAATCGAGGGTATTA
* * * *
83025881 CGATAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAA--TTC
1 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTC
** * *
83025944 TACCCTAC-AGGGGTGTTT
66 TA-AAT-CGA-GGGTATTA
** *
83025962 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGAAATTTCGGTAATTTTG
1 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTC
**
83026027 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTATTA
83026043 CGGTAATTCTA
1 CGGTAATTCTA
83026054 TAAATTAGGG
Statistics
Matches: 140, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
78 2 0.01
79 1 0.01
81 131 0.94
82 2 0.01
83 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (81 bp):
CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTC
TAAATCGAGGGTATTA
Found at i:83026092 original size:27 final size:27
Alignment explanation
Indices: 83026060--83026291 Score: 252
Period size: 27 Copynumber: 8.6 Consensus size: 27
83026050 TCTATAAATT
* **
83026060 AGGGGTACTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAACC
*** ** *
83026087 -GAGGGTATTTCAATAATTTTACAGGTCG
1 AG-GGGTATTTTGGTAATTTTACA-AACC
** * *
83026115 AG-GGTATTTCAGTAATTTCACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
83026141 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
83026168 AGGGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
83026195 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
83026222 AGGGGTATTTTGGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * *
83026249 AAGGGTATTCTAGTAATTTTAAAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
83026276 AGGGGTATTTTGGTAA
1 AGGGGTATTTTGGTAA
83026292 ACTAAAGTAT
Statistics
Matches: 171, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 167 0.98
29 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:83026097 original size:81 final size:81
Alignment explanation
Indices: 83026019--83026242 Score: 184
Period size: 81 Copynumber: 2.8 Consensus size: 81
83026009 GAAATTTCGG
** * * *
83026019 TAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTATAAATTAGGGGTACTTTGGTAATTTTACA
1 TAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAGGGGTACTTTGGTAATTTTACA
83026083 AGTCGAGGGTATTTCAA
65 AGTCGAGGGTATTTCAA
** *** *
83026100 TAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAA
* * **
83026165 -ACTAGGGGTATTTTGA
66 GTCGA-GGGTATTTCAA
* ***** * * *
83026181 TAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
1 TAATTTTACAAATCGA-GGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTA
83026243 TAAACCAAGG
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 4 0.03
81 111 0.94
82 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
TAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAA
GTCGAGGGTATTTCAA
Found at i:83029787 original size:38 final size:38
Alignment explanation
Indices: 83029702--83029900 Score: 229
Period size: 38 Copynumber: 5.2 Consensus size: 38
83029692 GAATCCAGTC
* * *
83029702 ACCAGCACAAAACCTGCGGGACTTTAAGCTTGAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CTCGGATATAAT
* * *
83029742 ACTAGCACTAAGCCTGCGGGATTTAACTCGGATATAGT
1 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
* * * *
83029780 TCCAGCACGAAGCCTACAGGATTTAACTCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
* * *
83029818 ACCAACACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
*
83029856 ACCAACACAAAGCCTGCGGGATTTAAC-CTGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACTC-GGATATAAT
*
83029894 TCCAGCA
1 ACCAGCA
83029901 TATAGCCTAC
Statistics
Matches: 138, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
37 1 0.01
38 114 0.83
39 5 0.04
40 18 0.13
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
Found at i:83035863 original size:45 final size:45
Alignment explanation
Indices: 83035799--83035976 Score: 275
Period size: 45 Copynumber: 4.0 Consensus size: 45
83035789 TATTGTACGG
*
83035799 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* ** *
83035844 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGTTGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
83035889 TACTATTTGGGCCTTTGAGCCTAACAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
83035934 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
83035977 AATGATGTCG
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 119 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:83036046 original size:41 final size:42
Alignment explanation
Indices: 83035953--83036051 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 42
83035943 GGCCTTCGAG
* *
83035953 CCTAGCAGGCTATAATGCCGGTGAAATGATGTCGGGCTTCAAG
1 CCTAGCAGGCTA-AATGCCGGTGAAATGATGTCGGGCTTAAAA
* * * *
83035996 CCTACCAGGCGAAATGCCGGTG-GATGAAT-TCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGAAATG-ATGTCGGGCTTAAAA
83036037 CCTAGCAGGCTAAAT
1 CCTAGCAGGCTAAAT
83036052 ATTGGTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
41 25 0.53
42 12 0.26
43 10 0.21
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (42 bp):
CCTAGCAGGCTAAATGCCGGTGAAATGATGTCGGGCTTAAAA
Found at i:83042221 original size:49 final size:49
Alignment explanation
Indices: 83042165--83042292 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
83042155 TGTGTGTCAG
* * *
83042165 TGTAAGACCTGTCTGGGACGTGGCATCGACACT-GATAGATGAGAGCCAC
1 TGTAAGACCTGTCTAGGACATGGCATCGAC-CTCGATAGATGAAAGCCAC
* * * * *
83042214 TGTAAGACCTGTCTAGGACATGGTATCGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAGCCAC
* * *
83042263 TGTAAGACCTATCTAGAACACGGCATCGAC
1 TGTAAGACCTGTCTAGGACATGGCATCGAC
83042293 TTTAATGTGC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 2 0.03
49 63 0.97
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAGCCAC
Found at i:83047452 original size:43 final size:43
Alignment explanation
Indices: 83047404--83048322 Score: 1802
Period size: 43 Copynumber: 21.4 Consensus size: 43
83047394 TGGTTTTCAG
83047404 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047447 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047490 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047533 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047576 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047619 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047662 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047705 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047748 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047791 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047834 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047877 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047920 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83047963 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83048006 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83048049 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83048092 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83048135 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83048178 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
*
83048221 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGG
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
* * *
83048264 CACTAAGTGTACAGGCAATAAGTGTTCACGGTTGTGAGATTGG
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
83048307 CACTAAGTGTGCGGGC
1 CACTAAGTGTGCGGGC
83048323 TTGAAATGCA
Statistics
Matches: 871, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 871 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (43 bp):
CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGA
Found at i:83048339 original size:29 final size:29
Alignment explanation
Indices: 83048304--83048377 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
83048294 GTTGTGAGAT
* *
83048304 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
83048333 TGGCACTAAGTGTGCTAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83048362 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83048378 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83048811 original size:40 final size:40
Alignment explanation
Indices: 83048688--83048908 Score: 234
Period size: 40 Copynumber: 5.5 Consensus size: 40
83048678 TCGAATGATG
* *
83048688 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
83048728 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
*
83048768 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83048808 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
83048848 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83048888 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
83048909 TAATCATGAT
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 131 0.87
41 19 0.13
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:83050294 original size:31 final size:31
Alignment explanation
Indices: 83050259--83050322 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
83050249 AAGTGGCCTA
*
83050259 ATAATGCATGTTGTGAAAATGATGGGTTTGC
1 ATAATGCATGTTATGAAAATGATGGGTTTGC
83050290 ATAATGCATGTTATGAAAATGATGGGTTTGC
1 ATAATGCATGTTATGAAAATGATGGGTTTGC
83050321 AT
1 AT
83050323 GTCAAATTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (31 bp):
ATAATGCATGTTATGAAAATGATGGGTTTGC
Found at i:83051870 original size:49 final size:49
Alignment explanation
Indices: 83051791--83052908 Score: 1492
Period size: 49 Copynumber: 22.9 Consensus size: 49
83051781 ATGATAGTAA
* * *
83051791 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83051840 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83051889 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83051938 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83051987 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052036 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052085 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052134 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052183 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052232 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052281 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052330 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052379 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052428 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052477 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052526 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052575 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052624 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052673 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052720 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * *
83052769 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * *
83052816 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
* *
83052865 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGA
83052909 TAAGTCCCGA
Statistics
Matches: 918, Mismatches: 147, Indels: 10
0.85 0.14 0.01
Matches are distributed among these distances:
47 86 0.09
48 1 0.00
49 831 0.91
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.27
Consensus pattern (49 bp):
GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATATGTGACAG
Found at i:83051957 original size:98 final size:98
Alignment explanation
Indices: 83051806--83052912 Score: 1866
Period size: 98 Copynumber: 11.4 Consensus size: 98
83051796 AATGGCCGAT
* * * * * * *
83051806 GTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
* * * * * *
83051871 TGTATATATATGTGATAAGGCCTAATGGCCGAT
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
* * * * * * * *
83051904 GTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
* * * * * *
83051969 TGTATATATATGTGATAAGGCCTAATGGCCGAT
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
* * * * *
83052002 GTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
*
83052067 TGTATATATGTGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052100 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052165 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052198 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052263 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052296 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052361 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052394 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052459 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052492 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052557 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052590 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052655 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052688 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052751 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
83052784 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
83052847 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
66 TGTATATATATGTGACAGGGCCGAGTGGCCAAC
*
83052880 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
83052913 TCCCGAAGGG
Statistics
Matches: 989, Mismatches: 18, Indels: 6
0.98 0.02 0.01
Matches are distributed among these distances:
96 201 0.20
97 1 0.00
98 787 0.80
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (98 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
TGTATATATATGTGACAGGGCCGAGTGGCCAAC
Found at i:83055015 original size:29 final size:29
Alignment explanation
Indices: 83054980--83055053 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
83054970 GTTGTGAGAT
* *
83054980 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
83055009 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83055038 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83055054 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83055502 original size:79 final size:81
Alignment explanation
Indices: 83055366--83055548 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
83055356 TCGAATGATG
* *
83055366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
83055430 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
83055445 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
83055507 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
83055525 ACCGGGCTATGTCCCGAAAGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
83055549 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:83055557 original size:40 final size:39
Alignment explanation
Indices: 83055367--83055550 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
83055357 CGAATGATGT
* * * *
83055367 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
83055407 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
83055447 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83055485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
83055526 CCGGGCTATGTCCCGAAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83055551 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83055572 original size:79 final size:79
Alignment explanation
Indices: 83055419--83055573 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
83055409 GGACTAAGAT
* * **
83055419 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
83055484 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
83055498 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAAGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGTTA-C
*
83055561 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
83055574 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:83055990 original size:48 final size:48
Alignment explanation
Indices: 83055916--83056007 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
83055906 CTTGATTCTC
* *
83055916 TGTTTTATAGATTTTGGTTCTCCAGCTATCGGACTCGGGCTTTTGAAG
1 TGTTTTATAGATTTTGGCTCTCCAGCTATCGGACTCGGGATTTTGAAG
83055964 TGTTTTATAGATTTTGGCTCGT-CAGCTATCGGACTCGGGATTTT
1 TGTTTTATAGATTTTGGCTC-TCCAGCTATCGGACTCGGGATTTT
83056008 TGGAAGTCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
48 40 0.98
49 1 0.02
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.42
Consensus pattern (48 bp):
TGTTTTATAGATTTTGGCTCTCCAGCTATCGGACTCGGGATTTTGAAG
Found at i:83060370 original size:31 final size:31
Alignment explanation
Indices: 83060335--83060431 Score: 101
Period size: 31 Copynumber: 3.1 Consensus size: 31
83060325 TTATAAAATG
83060335 AACATATACAATATATATTAGAAATACTA-AT
1 AACATATACAATATATATTA-AAATACTACAT
* *
83060366 AACATAAATAATATATATTAATAATACTACAT
1 AACATATACAATATATATTAA-AATACTACAT
*
83060398 AA-ATATGTAC-ATATATATTAAAATAAATACAT
1 AACATA--TACAATATATATTAAAAT-ACTACAT
83060430 AA
1 AA
83060432 TAATATTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
30 1 0.02
31 31 0.55
32 23 0.41
33 1 0.02
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (31 bp):
AACATATACAATATATATTAAAATACTACAT
Found at i:83060822 original size:27 final size:27
Alignment explanation
Indices: 83060799--83061223 Score: 481
Period size: 27 Copynumber: 15.6 Consensus size: 27
83060789 TTAGTTTACT
*
83060799 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83060826 AAATTTTACCAAAATACCCCCGGTTTGTA
1 AAA--TTACCAAAATACCCCTGGTTTGTA
* * **
83060855 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
83060882 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
83060909 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83060936 AAATTACCAAAAATACCCTTGGTTTGTA
1 AAATTACC-AAAATACCCCTGGTTTGTA
* * * *
83060964 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83060991 AAATCACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * **
83061018 AAATTACCAAAATACCATTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83061045 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
83061072 AAATTACTAAAAGACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83061099 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
83061126 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83061153 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83061180 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
83061207 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
83061224 TTAACCTGTA
Statistics
Matches: 338, Mismatches: 57, Indels: 6
0.84 0.14 0.01
Matches are distributed among these distances:
27 289 0.86
28 24 0.07
29 25 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:83061197 original size:81 final size:81
Alignment explanation
Indices: 83060799--83061280 Score: 491
Period size: 81 Copynumber: 5.9 Consensus size: 81
83060789 TTAGTTTACT
* * * * *
83060799 AAATTACCAAAATATCCCTGGTTTGTAAAATTTTACCAAAATACCCCCGGTTTGTAAAATTACTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAA--TTACTAAAATACCCCTGGTTTGTAAAATTACCA
* * **
83060864 AAATACCCTTGGTTTACA
64 AAATACCCCTAGTTTGTA
* * **
83060882 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACC-AA
* *
83060947 AATACCCTTGGTTTGTA
65 AATACCCCTAGTTTGTA
* * * * * * * *
83060964 AAATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCACTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
** **
83061029 ATACCATTAGTTTACA
66 ATACCCCTAGTTTGTA
* * * *
83061045 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAAGACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
83061110 ATACCCCTAGTTTGTA
66 ATACCCCTAGTTTGTA
* * *
83061126 AAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
*
83061191 ATACCCCT-GATTTGTG
66 ATACCCCTAG-TTTGTA
** * *** * * **
83061207 AAATTACTGAAATACCCTTAACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCT-GGTTTGTAAAATTACCAA
*
83061271 AGTACCCCTA
65 AATACCCCTA
83061281 ATTTACAGAA
Statistics
Matches: 337, Mismatches: 58, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
80 5 0.01
81 234 0.69
82 69 0.20
83 29 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
ATACCCCTAGTTTGTA
Found at i:83061237 original size:27 final size:27
Alignment explanation
Indices: 83060799--83061284 Score: 335
Period size: 27 Copynumber: 17.9 Consensus size: 27
83060789 TTAGTTTACT
* * **
83060799 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* ***
83060826 AAATTTTACCAAAATACCCCCGGTTTGTA
1 AAA--TTACTAAAATACCCCTAATTTGTA
* ** **
83060855 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCCTAATTTGTA
* **
83060882 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* ** **
83060909 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCCTAATTTGTA
* * **
83060936 AAATTACCAAAAATACCCTTGGTTTGTA
1 AAATTA-CTAAAATACCCCTAATTTGTA
* * ** *
83060964 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACTAAAATACCCCTAATTTGTA
* * * **
83060991 AAATCACCAAAATACCACTGGTTTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* ** * **
83061018 AAATTACCAAAATACCATTAGTTTACA
1 AAATTACTAAAATACCCCTAATTTGTA
* *
83061045 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* * ** *
83061072 AAATTACTAAAAGACCCTTTGTTTATA
1 AAATTACTAAAATACCCCTAATTTGTA
* *
83061099 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* *
83061126 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACTAAAATACCCCTAATTTGTA
*
83061153 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* * *
83061180 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACTAAAATACCCCTAATTTGTA
* * **
83061207 AAATTACTGAAATACCCTTAACCTGTA
1 AAATTACTAAAATACCCCTAATTTGTA
* * * *
83061234 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACTAAAATACCCCT-AATTTGTA
* *
83061261 AAATTACCAAAGTACCCCTAATTT
1 AAATTACTAAAATACCCCTAATTT
83061285 ACAGAATTAC
Statistics
Matches: 382, Mismatches: 72, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
26 3 0.01
27 326 0.85
28 28 0.07
29 25 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCCTAATTTGTA
Found at i:83061356 original size:27 final size:27
Alignment explanation
Indices: 83061316--83061546 Score: 311
Period size: 27 Copynumber: 8.6 Consensus size: 27
83061306 CGATTTATAA
* * *
83061316 AATTACTGAGATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83061343 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83061370 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83061397 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83061424 AATTACCGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83061451 AATTATC-ACAATACCCCTGTAAGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
83061478 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
83061505 AATTACTAAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83061532 AATTATCGAGATACC
1 AATTACCGAAATACC
83061547 TTATGGGGTA
Statistics
Matches: 181, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 179 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:83062043 original size:22 final size:22
Alignment explanation
Indices: 83061991--83062055 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
83061981 TTAAAGCCTT
* *
83061991 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
83062013 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
83062035 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
83062056 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:83062244 original size:27 final size:27
Alignment explanation
Indices: 83062214--83062315 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
83062204 ATTCTGTTAA
* *
83062214 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
83062241 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
83062268 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
83062295 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
83062316 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:83062457 original size:6 final size:6
Alignment explanation
Indices: 83062447--83062534 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
83062437 TTGCATTCAC
* * * * *
83062447 ATTCTG GTTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
83062497 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG GTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
83062535 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 3 0.05
6 54 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:83062495 original size:25 final size:25
Alignment explanation
Indices: 83062454--83062514 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
83062444 CACATTCTGG
* *
83062454 TTCTGATTCTGTTACCTGATACTGA
1 TTCTGATTCTGTCACCTAATACTGA
* *
83062479 TTTTGATTCTGTCACCTAATTCTGA
1 TTCTGATTCTGTCACCTAATACTGA
83062504 TTCTGATTCTG
1 TTCTGATTCTG
83062515 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.48
Consensus pattern (25 bp):
TTCTGATTCTGTCACCTAATACTGA
Found at i:83064511 original size:27 final size:27
Alignment explanation
Indices: 83064488--83064806 Score: 318
Period size: 27 Copynumber: 11.7 Consensus size: 27
83064478 TTAGTTTACT
* *
83064488 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
**
83064515 AAATTTTACCAAAATACCCCCGGTTTGTA
1 AAA--TTACCAAAATACCCCTAGTTTGTA
* * * **
83064544 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
83064571 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * *
83064598 AAATTACTAAAAGACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
83064625 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
83064652 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
83064679 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
83064706 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * ***
83064733 AAATTACTGAAATACCCTTAACCTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*** * *
83064760 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
83064787 AAATTACCAAAGTACCCCTA
1 AAATTACCAAAATACCCCTA
83064807 ATTTACAGAA
Statistics
Matches: 240, Mismatches: 46, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 207 0.86
28 4 0.02
29 25 0.10
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:83064600 original size:54 final size:54
Alignment explanation
Indices: 83064488--83064847 Score: 317
Period size: 54 Copynumber: 6.6 Consensus size: 54
83064478 TTAGTTTACT
* **
83064488 AAATTACCAAAATATCCC-TGGTTTGTAAAATTTTACCAAAATACCCCCGGTTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTATAAAA--TTACCAAAATACCCCTAGTTTGTA
* *
83064544 AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * *
83064598 AAATTACTAAAAGACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* ** * * *
83064652 AAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * * * ** * ***
83064706 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTTAACCTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
*** * ** * * * **
83064760 AAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTAATTTACA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* *** * *
83064814 GAATTACCATTTTACCCTCGATTTATAAAATTAC
1 AAATTACCAAAATACCCTTGGTTTATAAAATTAC
83064848 TGAGATACCC
Statistics
Matches: 257, Mismatches: 46, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
54 231 0.90
55 3 0.01
56 23 0.09
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:83064882 original size:27 final size:27
Alignment explanation
Indices: 83064842--83065072 Score: 311
Period size: 27 Copynumber: 8.6 Consensus size: 27
83064832 CGATTTATAA
* * *
83064842 AATTACTGAGATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83064869 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83064896 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83064923 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83064950 AATTACCGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83064977 AATTATC-ACAATACCCCTGTAAGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
83065004 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
83065031 AATTACTAAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83065058 AATTATCGAGATACC
1 AATTACCGAAATACC
83065073 TTATGGGGTA
Statistics
Matches: 181, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 179 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:83065535 original size:22 final size:22
Alignment explanation
Indices: 83065483--83065547 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
83065473 TTAAAGCCTT
* *
83065483 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
83065505 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
83065527 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
83065548 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:83065735 original size:27 final size:26
Alignment explanation
Indices: 83065705--83065806 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 26
83065695 ATTCTACTAA
* *
83065705 GTGGCTTTGCCACATTATCT-TCTTCTG
1 GTGGCTATGCCACAATATCTGTC-T-TG
83065732 GTGGCTATGCCACAAATATCTGTCTTG
1 GTGGCTATGCCAC-AATATCTGTCTTG
* *
83065759 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTCT-TG
* * *
83065786 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
83065807 ATAACTGATC
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.15
27 47 0.71
28 7 0.11
29 2 0.03
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTCTTG
Found at i:83065786 original size:54 final size:53
Alignment explanation
Indices: 83065705--83065806 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
83065695 ATTCTACTAA
* * * *
83065705 GTGGCTTTGCCACATTATCTTCTTCTGGTGGCTATGCCACAAATATCTGTCTTG
1 GTGGCTCTGCCACAATATCTTCATCTGGTGACTATGCCAC-AATATCTGTCTTG
* *
83065759 GTGGCTCTGCCACAATATCTGT-ATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCT-TCATCTGGTGACTATGCCACAATATCTG
83065807 ATAACTGATC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
53 8 0.20
54 32 0.78
55 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTTCATCTGGTGACTATGCCACAATATCTGTCTTG
Found at i:83065976 original size:19 final size:19
Alignment explanation
Indices: 83065954--83066011 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
83065944 TTCTGATTTT
83065954 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
83065973 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
83065985 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
83066004 TGATTCTG
1 TGATTCTG
83066012 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:83065981 original size:6 final size:6
Alignment explanation
Indices: 83065943--83066068 Score: 98
Period size: 6 Copynumber: 20.3 Consensus size: 6
83065933 TTGCATTCAC
* * *
83065943 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
83065993 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
83066043 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
83066069 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
5 6 0.06
6 73 0.76
7 14 0.15
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:83066038 original size:37 final size:31
Alignment explanation
Indices: 83065943--83066054 Score: 170
Period size: 31 Copynumber: 3.6 Consensus size: 31
83065933 TTGCATTCAC
*
83065943 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
83065975 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
83066006 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
83066037 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
83066055 ATTCTAGTTC
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
31 69 0.91
32 7 0.09
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:83066834 original size:29 final size:29
Alignment explanation
Indices: 83066791--83066854 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
83066781 TAGGTTTAGT
83066791 TTGGGTTTGAAGATGGGTTAAATGGGTAA
1 TTGGGTTTGAAGATGGGTTAAATGGGTAA
*
83066820 TTGGGTTTGAGGATGGGTTAAATGGGTAA
1 TTGGGTTTGAAGATGGGTTAAATGGGTAA
83066849 TTGGGT
1 TTGGGT
83066855 CTTGTTTTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.23, C:0.00, G:0.41, T:0.36
Consensus pattern (29 bp):
TTGGGTTTGAAGATGGGTTAAATGGGTAA
Found at i:83067527 original size:14 final size:14
Alignment explanation
Indices: 83067504--83067538 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
83067494 TAAGTTGATT
83067504 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
83067517 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
83067531 TTTGAAAA
1 TTTGAAAA
83067539 TACCTCAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:83067728 original size:75 final size:75
Alignment explanation
Indices: 83067558--83067933 Score: 350
Period size: 75 Copynumber: 4.8 Consensus size: 75
83067548 ATGTGACCCA
* *
83067558 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTAAAATAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--AAACATAAATT-GAA-AATACCT
*
83067623 CAGTGTGTGATCTG
62 CAGTGTGTGATTTG
* * * *
83067637 AAGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAATCATAAATTGAAAATACCTTAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCAGT
83067702 GTGTGATTTG
66 GTGTGATTTG
* * *** *
83067712 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAACAAAAACTGAAAA-ACAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCA-G
*
83067774 TGAAAATACCTCGGCATGTCTG
65 TG----T--GT--G-AT-T-TG
* *
83067796 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAACATAAATTGAGAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAACATAAATTGAAAATACCTCA
*
83067861 --GTGTGACTTG
64 GTGTGTGATTTG
* * * *
83067871 AGGCTCAACTCCCCTCTCGCAATATGAGTTGA-TTTTTTAAAGACAGAATTTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-ACATAAATTGAAAATACCTCA
83067934 ACGTGTCTTG
Statistics
Matches: 247, Mismatches: 32, Indels: 42
0.77 0.10 0.13
Matches are distributed among these distances:
72 11 0.04
73 39 0.16
75 81 0.33
76 3 0.01
77 12 0.05
78 1 0.00
79 38 0.15
80 1 0.00
81 1 0.00
82 3 0.01
83 1 0.00
84 33 0.13
86 1 0.00
88 19 0.08
89 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCAGT
GTGTGATTTG
Found at i:83067932 original size:73 final size:73
Alignment explanation
Indices: 83067763--83067953 Score: 224
Period size: 73 Copynumber: 2.6 Consensus size: 73
83067753 CAAAAACTGA
* * * *
83067763 AAAACAAAATTTGAAAATACCTCGGCATGTC-TGAGGTTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAATTTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
83067827 ATTTTTTTTT
66 A--TTTTTTT
* * * * * * *
83067837 GAAACATAAATTGAGAATACCTCAGTGTGACTTGAGGCTCAACTCCCCTCTCGCAATATGAGTTG
1 AAAACAGAATTTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
83067902 A-TTTTTT
66 ATTTTTTT
* *
83067909 AAAGACAGAATTTGAAAATACCTCAACGTGTCTTGAGGCTGAACT
1 AAA-ACAGAATTTGAAAATACCTCAGCGTGTCTTGAGGCTCAACT
83067954 TCTATATGCC
Statistics
Matches: 97, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
72 8 0.08
73 34 0.35
74 23 0.24
75 32 0.33
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (73 bp):
AAAACAGAATTTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTT
Found at i:83070255 original size:26 final size:25
Alignment explanation
Indices: 83070195--83070508 Score: 75
Period size: 25 Copynumber: 13.4 Consensus size: 25
83070185 TAATAGTGCT
* * *
83070195 ATATATATATTAAAGTATGTACGTA
1 ATATATATAATAAAATATGTACATA
83070220 ATA-ATAATAATAAATATATGTACATA
1 ATATAT-ATAATAAA-ATATGTACATA
* *
83070246 ATATATATAA-AATGAACATATAC--A
1 ATATATATAATAA--AATATGTACATA
*
83070270 ATATATAT--TAGAAATA-CTA-ATA
1 ATATATATAATA-AAATATGTACATA
* *
83070292 ATATAAATAAT-ATATAT-TA-ATA
1 ATATATATAATAAAATATGTACATA
* *
83070314 ATA-CTA-CAT-AAATATGTACAT-
1 ATATATATAATAAAATATGTACATA
83070335 ATATAT-TAA-AATAA-ATG--CATA
1 ATATATATAATAA-AATATGTACATA
*
83070356 ATA-ATAT--TAAAAGTATATACATA
1 ATATATATAATAAAA-TATGTACATA
* * * **
83070379 AAATAGCATTA-AAAATACATACATA
1 ATATA-TATAATAAAATATGTACATA
* *
83070404 ATATAGT-TATTAAAATATATAC---
1 ATATA-TATAATAAAATATGTACATA
*
83070426 ATA-ATATAATAAAATATATACATGA
1 ATATATATAATAAAATATGTACAT-A
*
83070451 A-ATAGTATAA-AAATATATATA-ACTA
1 ATATA-TATAATAAA-ATATGTACA-TA
* *
83070476 ATA-ATATTA-AAAATATATACATA
1 ATATATATAATAAAATATGTACATA
83070499 ATATATATAA
1 ATATATATAA
83070509 AATATATACC
Statistics
Matches: 220, Mismatches: 27, Indels: 85
0.66 0.08 0.26
Matches are distributed among these distances:
19 2 0.01
20 15 0.07
21 29 0.13
22 34 0.15
23 21 0.10
24 29 0.13
25 47 0.21
26 40 0.18
27 3 0.01
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.34
Consensus pattern (25 bp):
ATATATATAATAAAATATGTACATA
Found at i:83070307 original size:31 final size:30
Alignment explanation
Indices: 83070269--83070347 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 30
83070259 GAACATATAC
83070269 AATATATATTAGAAATACTA-ATAATATAAAT
1 AATATATATTA-AAATACTACATAA-ATAAAT
**
83070300 AATATATATTAATAATACTACATAAATATGT
1 AATATATATTAA-AATACTACATAAATAAAT
83070331 ACATATATATTAAAATA
1 A-ATATATATTAAAATA
83070348 AATGCATAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
30 1 0.02
31 27 0.63
32 15 0.35
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.37
Consensus pattern (30 bp):
AATATATATTAAAATACTACATAAATAAAT
Found at i:83070389 original size:25 final size:24
Alignment explanation
Indices: 83070338--83070517 Score: 144
Period size: 25 Copynumber: 7.6 Consensus size: 24
83070328 TGTACATATA
* * *
83070338 TATTAAAATAAATGCAT--AATAA
1 TATTAAAATATATACATAAAATAG
83070360 TATTAAAAGTATATACATAAAATAG
1 TATTAAAA-TATATACATAAAATAG
* * *
83070385 CATTAAAAATACATACATAATATAG
1 TATT-AAAATATATACATAAAATAG
83070410 TTATTAAAATATATACAT--AATA-
1 -TATTAAAATATATACATAAAATAG
* *
83070432 TAATAAAATATATACATGAAATAG
1 TATTAAAATATATACATAAAATAG
* *
83070456 TA-TAAAA-ATATATATAACTAATAA
1 TATTAAAATATATACATAA--AATAG
*
83070480 TATTAAAAATATATACATAATATA-
1 TATT-AAAATATATACATAAAATAG
83070504 TA-TAAAATATATAC
1 TATTAAAATATATAC
83070518 CTATATACCT
Statistics
Matches: 130, Mismatches: 15, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
21 16 0.12
22 27 0.21
23 20 0.15
24 10 0.08
25 37 0.28
26 11 0.08
27 9 0.07
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (24 bp):
TATTAAAATATATACATAAAATAG
Found at i:83070478 original size:47 final size:46
Alignment explanation
Indices: 83070388--83070516 Score: 140
Period size: 46 Copynumber: 2.8 Consensus size: 46
83070378 AAAATAGCAT
* * *
83070388 TAAAAATACATACATAATATAGTTATTAAAATATATACATAAT-ATAA
1 TAAAAATATATACATAA-ATAG-TATAAAAATATATAAATAATAATAA
*
83070435 T-AAAATATATACATGAAATAGTATAAAAATATATATAACTAATAATAT
1 TAAAAATATATACAT-AAATAGTATAAAAATATATA-AA-TAATAATAA
83070483 TAAAAATATATACAT-AATA-TATATAAAATATATA
1 TAAAAATATATACATAAATAGTATA-AAAATATATA
83070517 CCTATATACC
Statistics
Matches: 72, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
45 13 0.18
46 21 0.29
47 21 0.29
48 4 0.06
49 13 0.18
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (46 bp):
TAAAAATATATACATAAATAGTATAAAAATATATAAATAATAATAA
Found at i:83070532 original size:49 final size:48
Alignment explanation
Indices: 83070386--83070516 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 48
83070376 ATAAAATAGC
* * *
83070386 ATTAAAAATACATACATAATATAGTTATTAAAATATATA-CA-TAAT-AT
1 ATTAAAAATATATACATAA-ATAG-TATAAAAATATATATAACTAATAAT
*
83070433 AAT-AAAATATATACATGAAATAGTATAAAAATATATATAACTAATAAT
1 ATTAAAAATATATACAT-AAATAGTATAAAAATATATATAACTAATAAT
83070481 ATTAAAAATATATACAT-AATA-TATATAAAATATATA
1 ATTAAAAATATATACATAAATAGTATA-AAAATATATA
83070517 CCTATATACC
Statistics
Matches: 73, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
45 13 0.18
46 21 0.29
47 22 0.30
48 4 0.05
49 13 0.18
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (48 bp):
ATTAAAAATATATACATAAATAGTATAAAAATATATATAACTAATAAT
Found at i:83070873 original size:23 final size:22
Alignment explanation
Indices: 83070842--83070897 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
83070832 TAATACTACC
* *
83070842 TAAATATATACGTATATATATAT
1 TAAACATATACGCATATATA-AT
* *
83070865 TAAAGATATATGCATATATAAT
1 TAAACATATACGCATATATAAT
*
83070887 AAAACATATAC
1 TAAACATATAC
83070898 TACTACTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (22 bp):
TAAACATATACGCATATATAAT
Found at i:83071027 original size:14 final size:13
Alignment explanation
Indices: 83070987--83071028 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
83070977 AAAATAATAC
83070987 TATATATAAAA-A
1 TATATATAAAACA
*
83070999 TATATATACATACA
1 TATATATA-AAACA
83071013 TATATAATAAAACA
1 TATAT-ATAAAACA
83071027 TA
1 TA
83071029 CACTAAGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 2 0.08
14 12 0.48
15 3 0.12
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (13 bp):
TATATATAAAACA
Found at i:83072293 original size:29 final size:29
Alignment explanation
Indices: 83072250--83072313 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
83072240 TAGGTTTAGT
83072250 TTGGGTTTGAAGATGGGTTAAATGGGTAA
1 TTGGGTTTGAAGATGGGTTAAATGGGTAA
* *
83072279 TTGGTTTTGAGGATGGGTTAAATGGGTAA
1 TTGGGTTTGAAGATGGGTTAAATGGGTAA
83072308 TTGGGT
1 TTGGGT
83072314 CTTGTTTTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.23, C:0.00, G:0.39, T:0.38
Consensus pattern (29 bp):
TTGGGTTTGAAGATGGGTTAAATGGGTAA
Done.