Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 252 of 310
Found at i:83075390 original size:43 final size:43
Alignment explanation
Indices: 83075261--83075391 Score: 176
Period size: 43 Copynumber: 3.0 Consensus size: 43
83075251 ATAGGATTTC
* *
83075261 TGATATGTGATTACATGTAAGACCACATCTGGGAAGTTGGCAT
1 TGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * **
83075304 CGATATGTGATTACGTGTAAGACC-CTGTCTTTGACAG-TGGCAT
1 TGATATGTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
83075347 TGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
83075390 TG
1 TG
83075392 TACGAAATGT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.03
43 70 0.95
44 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
TGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:83077564 original size:77 final size:77
Alignment explanation
Indices: 83077437--83077598 Score: 243
Period size: 77 Copynumber: 2.1 Consensus size: 77
83077427 GTTAAAACTC
* * * * *
83077437 TCTTGTTTCAAAGGAATACAATATCACATCCAGCACGTTAGGACACGATCCTTTAAACCTTTGAA
1 TCTTGATTCAAAGGAATACAATATCACATCCAGCACATTAGGAAACGATCCTTTAAACCCTCGAA
*
83077502 ACTACGATCAAT
66 ACTACGACCAAT
* *
83077514 TCTTGATTCAAAGGAATACAGTATCACATCCAGCACATTAGGAAACGATCCTTTAAACCCTCGTA
1 TCTTGATTCAAAGGAATACAATATCACATCCAGCACATTAGGAAACGATCCTTTAAACCCTCGAA
*
83077579 GCTACGACCAAT
66 ACTACGACCAAT
83077591 TCTTGATT
1 TCTTGATT
83077599 TCCAAAAACT
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (77 bp):
TCTTGATTCAAAGGAATACAATATCACATCCAGCACATTAGGAAACGATCCTTTAAACCCTCGAA
ACTACGACCAAT
Found at i:83078296 original size:28 final size:28
Alignment explanation
Indices: 83078241--83078297 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
83078231 AATAACATGC
** *
83078241 AACAATAATATATGAAATAATATAAGAA
1 AACAATAATATACAAAACAATATAAGAA
83078269 AACAATCAATATACAAAACAATAT-AGAA
1 AACAAT-AATATACAAAACAATATAAGAA
83078297 A
1 A
83078298 TTAGGAGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (28 bp):
AACAATAATATACAAAACAATATAAGAA
Found at i:83078649 original size:24 final size:25
Alignment explanation
Indices: 83078595--83078656 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
83078585 AAAATATATT
* *
83078595 TTATATACATAAGATTTTAAAAACA
1 TTATATAAATAAGATTTTAAAAAAA
83078620 TGTATATAAAT-AGA-TTTAAAAGAAA
1 T-TATATAAATAAGATTTTAAAA-AAA
*
83078645 TTATATATATAA
1 TTATATAAATAA
83078657 AAATAACATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 15 0.48
25 8 0.26
26 8 0.26
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.37
Consensus pattern (25 bp):
TTATATAAATAAGATTTTAAAAAAA
Found at i:83082594 original size:79 final size:82
Alignment explanation
Indices: 83082483--83082667 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
83082473 GCTACTCGTT
* *
83082483 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83082546 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
83082563 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83082626 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83082643 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83082668 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83082667 original size:40 final size:40
Alignment explanation
Indices: 83082464--83082667 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
83082454 CGGAATTTAA
** *
83082464 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83082504 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83082544 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83082583 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83082623 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83082663 CCGGA
1 CCGGA
83082668 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83085358 original size:24 final size:25
Alignment explanation
Indices: 83085304--83085365 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
83085294 AAAATATATT
* *
83085304 TTATATACATAAGATTTTAAAAATA
1 TTATATAAATAAGATTTTAAAAAAA
83085329 TGTATATAAAT-AGA-TTTAAAAGAAA
1 T-TATATAAATAAGATTTTAAAA-AAA
*
83085354 TTATATATATAA
1 TTATATAAATAA
83085366 AAATAACATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 15 0.48
25 8 0.26
26 8 0.26
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (25 bp):
TTATATAAATAAGATTTTAAAAAAA
Found at i:83097027 original size:46 final size:46
Alignment explanation
Indices: 83096974--83097149 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
83096964 TATTTGGGCA
83096974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-GC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGGC
*** * * *
83097019 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAGGC
* * * *
83097066 ATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTGTGGATGCGAATGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGGC
* * *
83097114 T-CGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83097150 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 66 0.63
47 36 0.34
48 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGGC
Found at i:83097129 original size:93 final size:93
Alignment explanation
Indices: 83096970--83097142 Score: 269
Period size: 93 Copynumber: 1.9 Consensus size: 93
83096960 GGGATATTTG
*
83096970 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
83097035 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
83097063 GGCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTGTGGATGCGAATGC-T-CGAGCTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCG-A-GCGTCCGAACTCGTTG
*
83097126 AGTTGAGTCTGAGTTCG
64 AGTTGAGTCCGAGTTCG
83097143 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
93 69 0.95
94 2 0.03
95 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.32, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:83104898 original size:15 final size:15
Alignment explanation
Indices: 83104866--83104894 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
83104856 ATTTTCTTTG
83104866 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
83104881 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
83104895 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:83106071 original size:43 final size:43
Alignment explanation
Indices: 83106022--83106149 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 43
83106012 TAGGATTTCT
83106022 GATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
* ** * *
83106065 GATATGTGATTACGTGTAAGACC-CTGTCTACGATAGTGGCATC
1 GATATGTGATTACATGTAAGACCAC-GTCTGGGACATTGGCATC
* *
83106108 GATATGTGATTGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
83106150 TGTACGATAT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 69 0.97
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:83112152 original size:40 final size:39
Alignment explanation
Indices: 83112108--83112212 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
83112098 AGTGACCATA
*
83112108 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
83112148 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
83112186 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
83112213 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83112169 original size:39 final size:40
Alignment explanation
Indices: 83112068--83112231 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
83112058 TTGAATGATG
* *
83112068 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
83112108 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
83112147 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
83112187 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
83112227 TCCGG
1 TCCGG
83112232 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:83112231 original size:79 final size:80
Alignment explanation
Indices: 83112068--83112218 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
83112058 TTGAATGATG
*
83112068 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
83112133 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
83112148 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
83112210 TTGAACGAG
64 TTGAACGAG
83112219 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:83115606 original size:42 final size:42
Alignment explanation
Indices: 83115559--83115679 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 42
83115549 CACATAGTGC
* *
83115559 CATATCAATGCCATGTCCTAGATATGGTCTGACATGAGATCT
1 CATATCAATGCCATGTCCTAGATATGGTCTGACACGAAATCT
* *
83115601 CATATCAATGCCAATAG--CTCAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-AT-GTCCT-AGATATGGTCTGACACGAAATCT
* * * *
83115644 CATATCGATGCCATATCCCAGATATGGTCTTACACG
1 CATATCAATGCCATGTCCTAGATATGGTCTGACACG
83115680 TAACCTCAAC
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
42 32 0.48
43 33 0.50
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATGTCCTAGATATGGTCTGACACGAAATCT
Found at i:83115644 original size:43 final size:42
Alignment explanation
Indices: 83115559--83115679 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
83115549 CACATAGTGC
* * * *
83115559 CATATCAATGCCAT-GTCCTAGATATGGTCTGACATGAGATCT
1 CATATCAATGCCATAG-CCCAGATATGGTCTTACACGAAATCT
* *
83115601 CATATCAATGCCAATAGCTCAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATAGCCCAGATATGGTCTTACACGAAATCT
* *
83115644 CATATCGATGCCATATCCCAGATATGGTCTTACACG
1 CATATCAATGCCATAGCCCAGATATGGTCTTACACG
83115680 TAACCTCAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.49
43 33 0.49
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATAGCCCAGATATGGTCTTACACGAAATCT
Found at i:83126637 original size:25 final size:25
Alignment explanation
Indices: 83126606--83126669 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
83126596 CAAAATGAGG
* *
83126606 ATCAGAATCAGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAGGTAACAAA
*
83126631 ATCAGAATCAGTATCAGGTAACAAA
1 ATCAGAATCAGAATCAGGTAACAAA
*
83126656 ATTAGAATCAGAAT
1 ATCAGAATCAGAAT
83126670 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (25 bp):
ATCAGAATCAGAATCAGGTAACAAA
Found at i:83126985 original size:22 final size:22
Alignment explanation
Indices: 83126955--83127015 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
83126945 ACAATAACAA
* *
83126955 CACACAGCCATAATCAGGTTGG
1 CACAAAGCCATAATCAGGTTAG
* *
83126977 CACAAAGCCAT-TTGTAGGTTAG
1 CACAAAGCCATAAT-CAGGTTAG
*
83126999 CGCAAAGCCATAATCAG
1 CACAAAGCCATAATCAG
83127016 AATAATTGGC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 1 0.03
22 28 0.93
23 1 0.03
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (22 bp):
CACAAAGCCATAATCAGGTTAG
Found at i:83127615 original size:27 final size:27
Alignment explanation
Indices: 83127547--83127616 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
83127537 TACCCCATAA
* *
83127547 GGGTATCTCGATAATTCTACCCTACAG
1 GGGTATTTCAATAATTCTACCCTACAG
*
83127574 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAATAATTCTACCCTACAG
*
83127601 GGGTATTTTAATAATT
1 GGGTATTTCAATAATT
83127617 TTGTAAATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAATAATTCTACCCTACAG
Found at i:83130631 original size:43 final size:41
Alignment explanation
Indices: 83130583--83130710 Score: 116
Period size: 42 Copynumber: 3.0 Consensus size: 41
83130573 ACCTAGTACA
* *
83130583 ATGCCAACGTCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACGTCTCAGACG-GGTCTTACAAGAAATCAAATATCG
* *
83130626 ATGCCAC-TATCCTAGATAGGGTCTTACAAGAAATCAAATA-CG
1 ATGCCACGTCT-C-AGA-CGGGTCTTACAAGAAATCAAATATCG
* * *
83130668 ATGCCGATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
1 ATGCC-ACGTCTCAGAC-GGGTCTTACAAGAAATCAAATATCG
83130711 GAAATCCTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.03
42 34 0.49
43 31 0.45
44 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (41 bp):
ATGCCACGTCTCAGACGGGTCTTACAAGAAATCAAATATCG
Found at i:83130689 original size:42 final size:43
Alignment explanation
Indices: 83130602--83130710 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 43
83130592 TCTCAGACGT
* * * *
83130602 GGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGATAG
1 GGTCTTACAAGAAATCAAATATCGATGCCACTATCCCAGACAG
*
83130645 GGTCTTACAAGAAATCAAATA-CGATGCCGA-TGTCCCAGACAG
1 GGTCTTACAAGAAATCAAATATCGATGCC-ACTATCCCAGACAG
*
83130687 GGTCTTACACGAAATCAAATATCG
1 GGTCTTACAAGAAATCAAATATCG
83130711 GAAATCCTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 36 0.62
43 22 0.38
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACAAGAAATCAAATATCGATGCCACTATCCCAGACAG
Found at i:83145248 original size:50 final size:50
Alignment explanation
Indices: 83145184--83145522 Score: 333
Period size: 50 Copynumber: 6.7 Consensus size: 50
83145174 TTAGGTCATG
* * * * *
83145184 TGTGTAGTACTAAGTGCGGGCTACTACGTGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGATCACA
* * * * *
83145234 TGTGTGGTACTAAGTGCAGGCTACTATGTGTACCTA-ATAGTTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-AGATTG-ATAGATCACA
* ** * *
83145285 TGTGTAGTACTAAGTGCAGGCCACTACATTTACCAGATTGATAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGATCACA
* * * *
83145335 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--T-AGATCACA
* * * * *
83145386 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAACCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGATCACA
* * * * *
83145436 TGTGTAGTACTAAGTGCAGACTATTATGTGTACCATATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGATCACA
* *
83145486 TGTGTAGTACTAAGTGCATGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
83145523 GAGCTTCGGT
Statistics
Matches: 231, Mismatches: 50, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
49 4 0.02
50 148 0.64
51 76 0.33
52 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGATCACA
Found at i:83145311 original size:101 final size:101
Alignment explanation
Indices: 83145183--83145469 Score: 385
Period size: 101 Copynumber: 2.8 Consensus size: 101
83145173 TTTAGGTCAT
* * * *
83145183 GTGTGTAGTACTAAGTGCGGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTGGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
* ** *
83145248 TGCAGGCTACTATGTGTACCTAATAGTTTCGATCAC
66 TGCAGGCTACTATGTGTACCCAATAACTTCAATCAC
* * *
83145284 GTGTGTAGTACTAAGTGCAGGCCACTACATTTACCAGATTGATAGGTCACATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
* **
83145349 TGCAGGCTACTATGCGTACCCGTTAACTTCAATCAC
66 TGCAGGCTACTATGTGTACCCAATAACTTCAATCAC
* * ***
83145385 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAACCACATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
* *
83145450 TGCAGACTATTATGTGTACC
66 TGCAGGCTACTATGTGTACC
83145470 ATATTGATAG
Statistics
Matches: 161, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 161 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
TGCAGGCTACTATGTGTACCCAATAACTTCAATCAC
Found at i:83147598 original size:16 final size:16
Alignment explanation
Indices: 83147573--83147610 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
83147563 AATGATTTTT
83147573 ATTCAATTTCCTTACA
1 ATTCAATTTCCTTACA
* *
83147589 ATTCAGTTTCCTTGCA
1 ATTCAATTTCCTTACA
83147605 ATTCAA
1 ATTCAA
83147611 GCCTAGCCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (16 bp):
ATTCAATTTCCTTACA
Found at i:83149472 original size:42 final size:43
Alignment explanation
Indices: 83149403--83149504 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
83149393 GATTTACGTA
* ** **
83149403 TAAGACCATGTCTGGGACATCGACATCG-TATCTG-ATTTCATG
1 TAAGACCCTGTCTGGGACAGAGACATCGATAT-TGAATTAAATG
*
83149445 TAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTAAATG
1 TAAGACCCTGTCTGGGACAGAGACATCGATATTGAATTAAATG
83149488 TAAGACCAC-GTCTGGGA
1 TAAGACC-CTGTCTGGGA
83149505 AATCGGCATT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
42 26 0.51
43 24 0.47
44 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACAGAGACATCGATATTGAATTAAATG
Found at i:83149513 original size:43 final size:42
Alignment explanation
Indices: 83149403--83149513 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 42
83149393 GATTTACGTA
* * **
83149403 TAAGACCATGTCTGGGACATCGACATCGTATCTGATTTCATG
1 TAAGACCACGTCTGGGACATCGGCATCGTATCTGATTAAATG
**
83149445 TAAGACC-CTGTCTGGGACAGAGGCATCGATAT-TGAATTAAATG
1 TAAGACCAC-GTCTGGGACATCGGCATCG-TATCTG-ATTAAATG
*
83149488 TAAGACCACGTCTGGGAAATCGGCAT
1 TAAGACCACGTCTGGGACATCGGCAT
83149514 TTTACTTGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 25 0.45
43 30 0.54
44 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATCGGCATCGTATCTGATTAAATG
Found at i:83151495 original size:14 final size:15
Alignment explanation
Indices: 83151467--83151495 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83151457 CTCTTTCAAG
83151467 GACAAGAATAATCCA
1 GACAAGAATAATCCA
83151482 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
83151496 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:83154858 original size:25 final size:25
Alignment explanation
Indices: 83154825--83154881 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
83154815 GTAGGGAGGG
*
83154825 GATAA-GGGATAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
83154849 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
83154874 GATCAAGG
1 GAT-AAGG
83154882 AGCAAGAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.17
25 21 0.70
26 4 0.13
ACGTcount: A:0.37, C:0.05, G:0.37, T:0.21
Consensus pattern (25 bp):
GATAAGGGGAGAAGATTTAGGAGCT
Found at i:83156305 original size:27 final size:26
Alignment explanation
Indices: 83156265--83156367 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 26
83156255 AGGAAGCGTC
* *
83156265 CTGGTCGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
83156292 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
*
83156319 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
83156347 CTGGCGACTCTGTCACATTAT
1 CTGGTGGCTCTGCCACATTAT
83156368 GTTTTCTGGC
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
26 3 0.05
27 45 0.70
28 15 0.23
29 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:83162737 original size:25 final size:24
Alignment explanation
Indices: 83162674--83162737 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 24
83162664 GTAGAGAGGG
83162674 GATAAAGGAGAAGATTTAGGAGCT
1 GATAAAGGAGAAGATTTAGGAGCT
83162698 GATAAAGGGAGAAGATTTAGGAGCT
1 GATAAA-GGAGAAGATTTAGGAGCT
*
83162723 GATCAAGGAGCAAGA
1 GATAAAGGAG-AAGA
83162738 GTTGGTCGGC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 10 0.27
25 27 0.73
ACGTcount: A:0.42, C:0.06, G:0.34, T:0.17
Consensus pattern (24 bp):
GATAAAGGAGAAGATTTAGGAGCT
Found at i:83164155 original size:27 final size:26
Alignment explanation
Indices: 83164116--83164219 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 26
83164106 GGAAGCGTCT
83164116 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTATGCCAC-ATTATCTGATC
* *
83164143 TGGTGGCTTTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAT-TATCTGATC
* *
83164170 TGGTGGCTCTGCCACGA-TATCTGTATG
1 TGGTGGCTATGCCAC-ATTATCTG-ATC
* * **
83164197 TGGTGACTCTATCACATTATCTG
1 TGGTGGCTATGCCACATTATCTG
83164220 TTCTAGCAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 9 0.14
27 55 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
TGGTGGCTATGCCACATTATCTGATC
Found at i:83164201 original size:54 final size:53
Alignment explanation
Indices: 83164116--83164223 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
83164106 GGAAGCGTCT
* * *
83164116 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTTC
* * * *
83164170 TGGTGGCTCTGCCACGA-TATCTGTATGTGGTGACTCTATCACATTATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATTATCTGTTC
83164223 T
1 T
83164224 AGCAGCCATG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 16 0.35
54 30 0.65
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (53 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTTC
Found at i:83173457 original size:93 final size:93
Alignment explanation
Indices: 83173350--83173520 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
83173340 GCCCCTAAGT
* *
83173350 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83173415 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
83173443 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83173508 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83173521 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83173517 original size:46 final size:46
Alignment explanation
Indices: 83173345--83173517 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
83173335 AACCCGCCCC
* * *
83173345 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
83173391 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
83173439 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
83173484 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83173518 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:83173974 original size:30 final size:30
Alignment explanation
Indices: 83173940--83173999 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83173930 ATTTAATACG
83173940 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83173970 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83174000 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83183112 original size:18 final size:18
Alignment explanation
Indices: 83183089--83183146 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
83183079 ATGGGTTGGG
83183089 CCGTGTGGTTACACACGC
1 CCGTGTGGTTACACACGC
*
83183107 CCGTGTGGGTT----A-GG
1 CCGTGT-GGTTACACACGC
*
83183121 CCGTGTGGTCACACACGC
1 CCGTGTGGTTACACACGC
83183139 CCGTGTGG
1 CCGTGTGG
83183147 CTTGGGACAC
Statistics
Matches: 31, Mismatches: 3, Indels: 12
0.67 0.07 0.26
Matches are distributed among these distances:
13 3 0.10
14 7 0.23
15 1 0.03
17 1 0.03
18 15 0.48
19 4 0.13
ACGTcount: A:0.12, C:0.29, G:0.36, T:0.22
Consensus pattern (18 bp):
CCGTGTGGTTACACACGC
Found at i:83183116 original size:32 final size:32
Alignment explanation
Indices: 83183068--83183152 Score: 125
Period size: 32 Copynumber: 2.7 Consensus size: 32
83183058 TTTGGAGAGT
* * *
83183068 CACACGCCTGTATGGGTTGGGCCGTGTGGTTA
1 CACACGCCCGTGTGGGTTGGGCCGTGTGGTCA
*
83183100 CACACGCCCGTGTGGGTTAGGCCGTGTGGTCA
1 CACACGCCCGTGTGGGTTGGGCCGTGTGGTCA
*
83183132 CACACGCCCGTGTGGCTTGGG
1 CACACGCCCGTGTGGGTTGGG
83183153 ACACTCCCGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.12, C:0.27, G:0.38, T:0.24
Consensus pattern (32 bp):
CACACGCCCGTGTGGGTTGGGCCGTGTGGTCA
Found at i:83193782 original size:21 final size:21
Alignment explanation
Indices: 83193750--83193793 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
83193740 GAATTATGAC
**
83193750 TATTTGAATTAATTATAATTT
1 TATTTGAATTAAAAATAATTT
83193771 TATTT-AATTTAAAAATAATTT
1 TATTTGAA-TTAAAAATAATTT
83193792 TA
1 TA
83193794 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TATTTGAATTAAAAATAATTT
Found at i:83195790 original size:46 final size:46
Alignment explanation
Indices: 83195644--83195811 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
83195634 TTTGTGCTCT
** * * * *
83195644 AGTGTAAGACATGTCTGGGACATGCATATGTCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCA
* * * * * *
83195690 AGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCA
83195738 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCA
83195784 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
83195812 AGCTATGAGA
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 53 0.52
47 27 0.27
48 20 0.20
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCA
Found at i:83198375 original size:43 final size:43
Alignment explanation
Indices: 83198314--83198479 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
83198304 AGTATTTTTC
*
83198314 ATATGTG-TTCTCGTGTAAGACCACGTCTAGGACGTTGGCATCG
1 ATATGTGATT-TCGAGTAAGACCACGTCTAGGACGTTGGCATCG
* * *
83198357 ATATGTGATTTCGAGTAAGACCATGTCTGGGACATTGGCATCG
1 ATATGTGATTTCGAGTAAGACCACGTCTAGGACGTTGGCATCG
*
83198400 -TAATTGTGA-TTCGTGTAAGACC-CTGTCTAGGACAG-TGGCATCG
1 AT-A-TGTGATTTCGAGTAAGACCAC-GTCTAGGAC-GTTGGCATCG
* * * *
83198443 ACATGTGATTAC-ATGTAAGATCACGTCAAGGACGTTG
1 ATATGTGATTTCGA-GTAAGACCACGTCTAGGACGTTG
83198480 CCATTGTACG
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 7 0.07
43 85 0.85
44 8 0.08
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
ATATGTGATTTCGAGTAAGACCACGTCTAGGACGTTGGCATCG
Found at i:83204217 original size:15 final size:15
Alignment explanation
Indices: 83204185--83204213 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
83204175 ATTTTCAGTG
83204185 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
83204200 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
83204214 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:83207368 original size:57 final size:55
Alignment explanation
Indices: 83207299--83207411 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 55
83207289 ATGAAGTTTG
83207299 TTATATTGCAAATACATAGTTT-TATTGTTCTTAATGTGATATGAAAATTTTGGATAA
1 TTATATTGCAAATACATA-TTTGTATTGTTCTTAATGTG--ATGAAAATTTTGGATAA
83207356 TTATATTGCAAATACATATTTGTATTGTTCTTAATGTGATGAAAATTTTGGATAA
1 TTATATTGCAAATACATATTTGTATTGTTCTTAATGTGATGAAAATTTTGGATAA
83207411 T
1 T
83207412 GTTTGGAATT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
55 18 0.33
56 3 0.05
57 34 0.62
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (55 bp):
TTATATTGCAAATACATATTTGTATTGTTCTTAATGTGATGAAAATTTTGGATAA
Found at i:83214423 original size:40 final size:40
Alignment explanation
Indices: 83214372--83214517 Score: 256
Period size: 40 Copynumber: 3.6 Consensus size: 40
83214362 CATTTGAATG
*
83214372 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGAT
83214412 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGAT
83214452 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGAT
* * *
83214492 ATGTCCGGGTTAAGACCCAAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAA
83214518 ATGTGTTTGC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGAT
Found at i:83221040 original size:28 final size:28
Alignment explanation
Indices: 83220999--83221055 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
83220989 AGATTACCAT
83220999 GTGTAAACTAAGACTACCATGTGTAAGA
1 GTGTAAACTAAGACTACCATGTGTAAGA
* *
83221027 GTGTAAACTGAGACTGCCATGTGTAAGA
1 GTGTAAACTAAGACTACCATGTGTAAGA
83221055 G
1 G
83221056 GTTCGACGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (28 bp):
GTGTAAACTAAGACTACCATGTGTAAGA
Found at i:83227815 original size:43 final size:43
Alignment explanation
Indices: 83227749--83227910 Score: 150
Period size: 43 Copynumber: 3.8 Consensus size: 43
83227739 ATATATGGTC
*
83227749 TTACATGTAAGACCATGTTTGGGACATTGGCATTTTATTGTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTTTATTGTGA
* * * *
83227792 TTACGTGTAAGACCATGTCTGGGATATTGGCATCGTTATT-CGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCAT-TTTATTGTGA
* * * * **
83227835 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCA-TCGATATGTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTTTAT-TGTGA
* * * *
83227878 TAACATGTAAGACCATATTTGGGATA-TGGCATT
1 TTACATGTAAGACCATGTCTGGGACATTGGCATT
83227911 GTGCGAGCTA
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 82 0.86
44 5 0.05
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATTTTATTGTGA
Found at i:83239177 original size:23 final size:23
Alignment explanation
Indices: 83239147--83239193 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
83239137 TTGTGCTGCG
83239147 AACATTATGCGAAAATTAGTTAT
1 AACATTATGCGAAAATTAGTTAT
83239170 AACATTATGCGAAAATTAGTTAT
1 AACATTATGCGAAAATTAGTTAT
83239193 A
1 A
83239194 CGCCAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (23 bp):
AACATTATGCGAAAATTAGTTAT
Found at i:83257376 original size:24 final size:24
Alignment explanation
Indices: 83257349--83257432 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
83257339 TTGGAGGCCT
83257349 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
83257373 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** * *
83257398 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
83257423 AGCCCTTTTA
1 AGCCCTTTTA
83257433 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 37 0.71
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:83257396 original size:25 final size:25
Alignment explanation
Indices: 83257362--83257431 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
83257352 CTCTTTTAAT
*
83257362 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
83257387 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
83257412 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
83257432 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:83258150 original size:27 final size:28
Alignment explanation
Indices: 83258111--83258210 Score: 127
Period size: 27 Copynumber: 3.7 Consensus size: 28
83258101 GTTGAAGTTA
83258111 TAATTCTA-TAAATCGAGGGTAAAACGG
1 TAATTCTAGTAAATCGAGGGTAAAACGG
* * *
83258138 TTATT-TTGTAAATCGAGGGTGAAACGG
1 TAATTCTAGTAAATCGAGGGTAAAACGG
*
83258165 TAATTCTAG-AAATCGAGGGTAAAATGG
1 TAATTCTAGTAAATCGAGGGTAAAACGG
*
83258192 TAATTCTA-CAAATCGAGGG
1 TAATTCTAGTAAATCGAGGG
83258211 CATTTCAGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
26 1 0.02
27 60 0.95
28 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (28 bp):
TAATTCTAGTAAATCGAGGGTAAAACGG
Found at i:83266353 original size:28 final size:28
Alignment explanation
Indices: 83266320--83266378 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
83266310 CTCACCTACA
*
83266320 TAAATTACATAATGCTTTGTTGTGTGAC
1 TAAATTACATAATGCTTTGTTATGTGAC
*
83266348 TAAATTACATGATGCTTTGTTATGTGAC
1 TAAATTACATAATGCTTTGTTATGTGAC
83266376 TAA
1 TAA
83266379 CTCATTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (28 bp):
TAAATTACATAATGCTTTGTTATGTGAC
Found at i:83268012 original size:27 final size:27
Alignment explanation
Indices: 83267941--83268041 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
83267931 GGAGGAAGTG
* * *
83267941 TACTGTTACTCGTAGCATTGCCACATA
1 TACTGTTACTGGCAGCTTTGCCACATA
**
83267968 TACTGTTACTGGTGGCTTTGCCACATA
1 TACTGTTACTGGCAGCTTTGCCACATA
* * ** *
83267995 TACTGATACTGACAGCTTTGCTGC-GA
1 TACTGTTACTGGCAGCTTTGCCACATA
83268021 TACTGTTACTGGCAGCTTTGC
1 TACTGTTACTGGCAGCTTTGC
83268042 TATGATATTA
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 20 0.32
27 42 0.68
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
TACTGTTACTGGCAGCTTTGCCACATA
Found at i:83268048 original size:26 final size:26
Alignment explanation
Indices: 83267967--83268093 Score: 94
Period size: 26 Copynumber: 4.8 Consensus size: 26
83267957 ATTGCCACAT
** *
83267967 ATACTGTTACTGGTGGCTTTGCCACAT-
1 ATACTGTTACTGGCAGCTTTG-C-TATG
* * **
83267994 ATACTGATACTGACAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTATG
83268020 ATACTGTTACTGGCAGCTTTGCTATG
1 ATACTGTTACTGGCAGCTTTGCTATG
* * * * * *
83268046 ATATTATTATTGGTAGCTTTGTTGTG
1 ATACTGTTACTGGCAGCTTTGCTATG
* *
83268072 ATATTATTACTGGCAGCTTTGC
1 ATACTGTTACTGGCAGCTTTGC
83268094 AGTGATATTG
Statistics
Matches: 79, Mismatches: 20, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
26 62 0.78
27 17 0.22
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTATG
Found at i:83268098 original size:26 final size:26
Alignment explanation
Indices: 83268001--83268102 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 26
83267991 CATATACTGA
* * * * *
83268001 TACTGACAGCTTTGCTGCGATACTGT
1 TACTGGCAGCTTTGCAGTGATATTAT
83268027 TACTGGCAGCTTTGCTA-TGATATTAT
1 TACTGGCAGCTTTGC-AGTGATATTAT
* * **
83268053 TATTGGTAGCTTTGTTGTGATATTAT
1 TACTGGCAGCTTTGCAGTGATATTAT
83268079 TACTGGCAGCTTTGCAGTGATATT
1 TACTGGCAGCTTTGCAGTGATATT
83268103 GGTGTGTTTG
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
TACTGGCAGCTTTGCAGTGATATTAT
Found at i:83273825 original size:29 final size:29
Alignment explanation
Indices: 83273756--83273902 Score: 163
Period size: 29 Copynumber: 5.1 Consensus size: 29
83273746 AGTTTGCCAT
* * *
83273756 AAGGCATTCCTTTAATAGAGAT-GATCAAA
1 AAGGCATTCTTTTAATAGAGATAG-CCACA
*
83273785 AAGGCATCCTTTTAATAGAGATAGCCACA
1 AAGGCATTCTTTTAATAGAGATAGCCACA
* ** *
83273814 TAGAAATTCTTTTAATAGAGATAGCCATA
1 AAGGCATTCTTTTAATAGAGATAGCCACA
*
83273843 AAGGCA-TCTTTTGAATAGAGATAGCCTCA
1 AAGGCATTCTTTT-AATAGAGATAGCCACA
* *
83273872 AAGGCATTCTTTTAACAAAGATAGCCACA
1 AAGGCATTCTTTTAATAGAGATAGCCACA
83273901 AA
1 AA
83273903 CAAACATAGC
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
28 6 0.06
29 85 0.87
30 7 0.07
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (29 bp):
AAGGCATTCTTTTAATAGAGATAGCCACA
Found at i:83273958 original size:29 final size:29
Alignment explanation
Indices: 83273926--83273989 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
83273916 AAAGGATTCC
* ** *
83273926 TTATAACAAATTTTTTCATAAAGGCTTTT
1 TTATAACAAAGTTTGCCACAAAGGCTTTT
* *
83273955 TTATAATAGAGTTTGCCACAAAGGCTTTT
1 TTATAACAAAGTTTGCCACAAAGGCTTTT
83273984 TTATAA
1 TTATAA
83273990 TACAGATCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (29 bp):
TTATAACAAAGTTTGCCACAAAGGCTTTT
Found at i:83274009 original size:29 final size:29
Alignment explanation
Indices: 83273942--83274063 Score: 109
Period size: 29 Copynumber: 4.2 Consensus size: 29
83273932 CAAATTTTTT
* * **
83273942 CATAAAGGCTTTTTTATAATAGAGTTTGC
1 CATAAAGGCTTTCTTATAATAGAGATCAC
* * *
83273971 CACAAAGGCTTTTTTATAATACAGATCAC
1 CATAAAGGCTTTCTTATAATAGAGATCAC
* * * *
83274000 CATAATGGCTCTCTTATAACAAAGATCAC
1 CATAAAGGCTTTCTTATAATAGAGATCAC
* * * *
83274029 GACAAAGGATTTCTTATAGTAGAGATCAC
1 CATAAAGGCTTTCTTATAATAGAGATCAC
83274058 CATAAA
1 CATAAA
83274064 TACTTCCTTT
Statistics
Matches: 72, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
CATAAAGGCTTTCTTATAATAGAGATCAC
Found at i:83280675 original size:79 final size:82
Alignment explanation
Indices: 83280564--83280748 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
83280554 GCTACTCGTT
* *
83280564 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83280627 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
83280644 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83280707 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83280724 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83280749 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83280748 original size:40 final size:40
Alignment explanation
Indices: 83280545--83280748 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
83280535 CGGAATTTAA
** *
83280545 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83280585 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83280625 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83280664 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83280704 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83280744 CCGGA
1 CCGGA
83280749 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83285551 original size:66 final size:66
Alignment explanation
Indices: 83285445--83285576 Score: 219
Period size: 66 Copynumber: 2.0 Consensus size: 66
83285435 TATTTGCGCA
* *
83285445 CCTCAAATCAATAGTCTTGCTCTTGCAATTCACAATCGCATCATGCGCGGTCAACCAATCCAACC
1 CCTCAAATCAATAGTCTTGCTCTTGCAATTCACAACCGCATCATGCACGGTCAACCAATCCAACC
83285510 C
66 C
* * *
83285511 CCTCAATTCAATAGTCTTGCTTTTGGAATTCACAACCGCATCATGCACGGTCAACCAATCCAACC
1 CCTCAAATCAATAGTCTTGCTCTTGCAATTCACAACCGCATCATGCACGGTCAACCAATCCAACC
83285576 C
66 C
83285577 GAGAATAACA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.29, C:0.34, G:0.12, T:0.25
Consensus pattern (66 bp):
CCTCAAATCAATAGTCTTGCTCTTGCAATTCACAACCGCATCATGCACGGTCAACCAATCCAACC
C
Found at i:83286224 original size:87 final size:88
Alignment explanation
Indices: 83286074--83286248 Score: 289
Period size: 87 Copynumber: 2.0 Consensus size: 88
83286064 GATCCACACT
* * *
83286074 TGTAACAGGAGCGGTCAGGGAATCTACAACTCCCCGAATGCCATTTATCGCAATATCGACATTT-
1 TGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCACTTACCGCAATATCGACATTTC
*
83286138 TTCTGTCTCGACGTTCATTCCCC
66 TCCTGTCTCGACGTTCATTCCCC
*
83286161 TGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCACTTACCGCAATATCGGCATTTC
1 TGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCACTTACCGCAATATCGACATTTC
83286226 GTCCTGTCTCGACGTTCATTCCC
66 -TCCTGTCTCGACGTTCATTCCC
83286249 AACACTGGCG
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 60 0.74
89 21 0.26
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (88 bp):
TGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCACTTACCGCAATATCGACATTTC
TCCTGTCTCGACGTTCATTCCCC
Found at i:83286487 original size:35 final size:35
Alignment explanation
Indices: 83286437--83286506 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
83286427 TTTTCTTTTC
83286437 TAAGCTCTTCAGCTTTACAAGCTCGCTCGACAAGT
1 TAAGCTCTTCAGCTTTACAAGCTCGCTCGACAAGT
*
83286472 TAAGCTCTTCGGCTTTACAAGCTCGCTCGACAAGT
1 TAAGCTCTTCAGCTTTACAAGCTCGCTCGACAAGT
83286507 ACTACGAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (35 bp):
TAAGCTCTTCAGCTTTACAAGCTCGCTCGACAAGT
Found at i:83286874 original size:71 final size:71
Alignment explanation
Indices: 83286756--83286890 Score: 227
Period size: 71 Copynumber: 1.9 Consensus size: 71
83286746 TTGGAAAAAC
*
83286756 TCCCAAGTTACTTGCTCTCAGGGCACAACAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATT
1 TCCCAAGTTACTTGCTCTCAGGGCACAACAGAAATCAGAGTACTCCACCAATAGTAGGCAGAATT
83286821 GCGTAG
66 GCGTAG
* *
83286827 TCCCAAGTTACTTGCTCTCTGGGCACAACAGAAATCA-ACGTATTCCACCAATAGTAGGCAGAAT
1 TCCCAAGTTACTTGCTCTCAGGGCACAACAGAAATCAGA-GTACTCCACCAATAGTAGGCAGAAT
83286891 CACGTAGCAA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
70 1 0.02
71 59 0.98
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (71 bp):
TCCCAAGTTACTTGCTCTCAGGGCACAACAGAAATCAGAGTACTCCACCAATAGTAGGCAGAATT
GCGTAG
Found at i:83287276 original size:24 final size:24
Alignment explanation
Indices: 83287244--83287297 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
83287234 AGAGTCTGCC
83287244 GGCGCTGTCCCTTGTGCGGGAGCA
1 GGCGCTGTCCCTTGTGCGGGAGCA
83287268 GGCGCTGTCCCTTGTGCGGGAGCA
1 GGCGCTGTCCCTTGTGCGGGAGCA
83287292 GGCGCT
1 GGCGCT
83287298 ACACTCTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.30, G:0.43, T:0.20
Consensus pattern (24 bp):
GGCGCTGTCCCTTGTGCGGGAGCA
Found at i:83289037 original size:30 final size:31
Alignment explanation
Indices: 83288988--83289050 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
83288978 ACTTATTTTA
83288988 TTGTTAATTATTATTATTATTTTAGAGGCAT
1 TTGTTAATTATTATTATTATTTTAGAGGCAT
*
83289019 TTGTTAATT-TTGTTATTATTTTAGAGGCAT
1 TTGTTAATTATTATTATTATTTTAGAGGCAT
83289049 TT
1 TT
83289051 ACTTGTTATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (31 bp):
TTGTTAATTATTATTATTATTTTAGAGGCAT
Found at i:83289063 original size:30 final size:30
Alignment explanation
Indices: 83288991--83289064 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
83288981 TATTTTATTG
* *
83288991 TTAATTATTATTATTATTTTAGAGGCATTTG
1 TTAATTA-TGTTATTATTTTAGAGGCATTTC
*
83289022 TTAATTTTGTTATTATTTTAGAGGCATTTAC
1 TTAATTATGTTATTATTTTAGAGGCATTT-C
*
83289053 TT-GTTATGTTAT
1 TTAATTATGTTAT
83289065 ATCTATTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 29 0.78
31 8 0.22
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.57
Consensus pattern (30 bp):
TTAATTATGTTATTATTTTAGAGGCATTTC
Found at i:83290375 original size:25 final size:25
Alignment explanation
Indices: 83290333--83290381 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
83290323 CATAGCTTTA
* *
83290333 ATAAAATAAGGTTGATAATAAATGC
1 ATAAAATAAGGTTCATAACAAATGC
* *
83290358 ATAAAATGATGTTCATAACAAATG
1 ATAAAATAAGGTTCATAACAAATG
83290382 GGAATGTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (25 bp):
ATAAAATAAGGTTCATAACAAATGC
Found at i:83292495 original size:24 final size:24
Alignment explanation
Indices: 83292467--83292530 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
83292457 TTTCTAGAAG
* *
83292467 ATTTAATATTTATTAGTATAAGAT
1 ATTTAACATTTATTAGCATAAGAT
*
83292491 ATTTAACATTTATTAGCATAATAT
1 ATTTAACATTTATTAGCATAAGAT
* *
83292515 ATTTGACATTGATTAG
1 ATTTAACATTTATTAG
83292531 AATTAGGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (24 bp):
ATTTAACATTTATTAGCATAAGAT
Found at i:83296984 original size:24 final size:24
Alignment explanation
Indices: 83296933--83296985 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
83296923 TTTAATATTT
* *
83296933 ATTAGTATAATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
83296957 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
83296981 ATTAG
1 ATTAG
83296986 AATTAGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:83298836 original size:21 final size:21
Alignment explanation
Indices: 83298810--83298851 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
83298800 CAACGCCAAT
*
83298810 CTTTGGAGATTGACATTAAAG
1 CTTTGGAGATTGACATCAAAG
83298831 CTTTGGAGATTGACATCAAAG
1 CTTTGGAGATTGACATCAAAG
83298852 AAATGATGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (21 bp):
CTTTGGAGATTGACATCAAAG
Found at i:83300621 original size:26 final size:25
Alignment explanation
Indices: 83300573--83300624 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
83300563 CATTTAAAAC
*
83300573 ATAATTTAAAACTAAAAAAAATAAT
1 ATAATTAAAAACTAAAAAAAATAAT
* *
83300598 ATAATTAAAAATCTAATAATAATAAT
1 ATAATTAAAAA-CTAAAAAAAATAAT
83300624 A
1 A
83300625 AGTTCATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAATTAAAAACTAAAAAAAATAAT
Found at i:83302620 original size:26 final size:26
Alignment explanation
Indices: 83302574--83302623 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
83302564 GGATGGTGAG
83302574 GACCATCAACTACGAAAAGGGATAAC
1 GACCATCAACTACGAAAAGGGATAAC
* *
83302600 GACCATCGAA-TATGAAGAGGGATA
1 GACCATC-AACTACGAAAAGGGATA
83302624 GCTTCAGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (26 bp):
GACCATCAACTACGAAAAGGGATAAC
Found at i:83302675 original size:84 final size:86
Alignment explanation
Indices: 83302500--83302709 Score: 232
Period size: 84 Copynumber: 2.4 Consensus size: 86
83302490 CGAGGAGAAT
* * *
83302500 GAAAAGGGATGGTGATGACCATCGAATATGAAAAGGGATAGCTTCCGCTATCATTTATGAAAAGG
1 GAAAAGGGAT-GAGACGACCATCGAATATGAAAAGGGATAGCTTCAGCTATCATTTATGAAAAGG
*
83302565 GATGGTGAGGACCATCAACTAC
65 GATGCTGAGGACCATCAACTAC
*
83302587 GAAAAGGGAT-A-ACGACCATCGAATATGAAGAGGGATAGCTTCAGCTATCGA-TTATGAAAAGG
1 GAAAAGGGATGAGACGACCATCGAATATGAAAAGGGATAGCTTCAGCTATC-ATTTATGAAAAGG
** ** * * *
83302649 GATAGCTTCGG-TTATCGATTAT
65 GAT-GCTGAGGACCATCAACTAC
83302671 GAAAAGGGATGATGACGACCATC-AATTATGAAAAGGGAT
1 GAAAAGGGATGA-GACGACCATCGAA-TATGAAAAGGGAT
83302710 GGTGACGACC
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
84 65 0.62
85 6 0.06
86 2 0.02
87 31 0.30
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.22
Consensus pattern (86 bp):
GAAAAGGGATGAGACGACCATCGAATATGAAAAGGGATAGCTTCAGCTATCATTTATGAAAAGGG
ATGCTGAGGACCATCAACTAC
Found at i:83302699 original size:58 final size:58
Alignment explanation
Indices: 83302498--83302767 Score: 198
Period size: 58 Copynumber: 4.7 Consensus size: 58
83302488 ATCGAGGAGA
* *
83302498 ATGAAAAGGGATGGTGATGACCATCGAA-TATGAAAAGGGATAGCTTCCGCTATC-ATTT
1 ATGAAAAGGGATGGTGACGACCATC-AATTATGAAAAGGGATAGCTTCGGCTATCGA-TT
* * * * * * *
83302556 ATGAAAAGGGATGGTGAGGACCATCAACTACGAAAAGGGATA---ACGACCATCGAAT
1 ATGAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATAGCTTCGGCTATCGATT
* * * * * *
83302611 ATGAAGAGGGATAGCT-TC-AGCTATCGATTATGAAAAGGGATAGCTTCGGTTATCGATT
1 ATGAAAAGGGAT-GGTGACGA-CCATCAATTATGAAAAGGGATAGCTTCGGCTATCGATT
* * * * *
83302669 ATGAAAAGGGATGATGACGACCATCAATTATGAAAAGGGAT-GGTGACGACCATCGATT
1 ATGAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATAGCT-TCGGCTATCGATT
* ** *
83302727 AATGAAAGGGGATGGTTTCAACCATCGAA-TATGAAAAGGGA
1 -ATGAAAAGGGATGGTGACGACCATC-AATTATGAAAAGGGA
83302768 CGGTTATGAC
Statistics
Matches: 165, Mismatches: 35, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
54 1 0.01
55 35 0.21
56 3 0.02
57 6 0.04
58 85 0.52
59 33 0.20
60 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.22
Consensus pattern (58 bp):
ATGAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATAGCTTCGGCTATCGATT
Found at i:83302704 original size:113 final size:115
Alignment explanation
Indices: 83302517--83302767 Score: 321
Period size: 113 Copynumber: 2.2 Consensus size: 115
83302507 GATGGTGATG
* *
83302517 ACCATCGAATATGAAAAGGGATAGCTTCCGCTATCATTTATGAAAAGGGATGGTGAGGACCATCA
1 ACCATCGAATATGAAAAGGGATAGCTTCCGCTATCATTTATGAAAAGGGATGATGACGACCATCA
83302582 ACTACGAAAAGGGA-TAACGACCATCGAAT-ATG-AAGAGGGATAGCTTCA
66 ACTACGAAAAGGGAGTAACGACCATCGAATAATGAAAG-GGGATAGCTTCA
* * * * *
83302630 GCTATCGATTATGAAAAGGGATAGCTTCGGTTATCGA-TTATGAAAAGGGATGATGACGACCATC
1 ACCATCGAATATGAAAAGGGATAGCTTCCGCTATC-ATTTATGAAAAGGGATGATGACGACCATC
* * * * * *
83302694 AATTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAGGGGATGGTTTCA
65 AACTACGAAAAGGGA--GTAACGACCATCGAATAATGAAAGGGGATAGCTTCA
83302747 ACCATCGAATATGAAAAGGGA
1 ACCATCGAATATGAAAAGGGA
83302768 CGGTTATGAC
Statistics
Matches: 116, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
113 68 0.59
114 1 0.01
116 13 0.11
117 31 0.27
118 3 0.03
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.22
Consensus pattern (115 bp):
ACCATCGAATATGAAAAGGGATAGCTTCCGCTATCATTTATGAAAAGGGATGATGACGACCATCA
ACTACGAAAAGGGAGTAACGACCATCGAATAATGAAAGGGGATAGCTTCA
Found at i:83302739 original size:30 final size:29
Alignment explanation
Indices: 83302498--83302781 Score: 179
Period size: 29 Copynumber: 9.9 Consensus size: 29
83302488 ATCGAGGAGA
* *
83302498 ATGAAAAGGGATGGTGATGACCATCGAAT
1 ATGAAAAGGGATGGTGACGACCATCGATT
* ** *
83302527 ATGAAAAGGGATAGCTTCCG-CTATC-ATTT
1 ATGAAAAGGGAT-GGTGACGACCATCGA-TT
* * *
83302556 ATGAAAAGGGATGGTGAGGACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGATT
* * *
83302585 ACGAAAAGGGA---TAACGACCATCGAAT
1 ATGAAAAGGGATGGTGACGACCATCGATT
* * * *
83302611 ATGAAGAGGGATAGCT-TC-AGCTATCGATT
1 ATGAAAAGGGAT-GGTGACGA-CCATCGATT
* * ***
83302640 ATGAAAAGGGATAGCT-TCGGTTATCGATT
1 ATGAAAAGGGAT-GGTGACGACCATCGATT
* *
83302669 ATGAAAAGGGATGATGACGACCATCAATT
1 ATGAAAAGGGATGGTGACGACCATCGATT
83302698 ATGAAAAGGGATGGTGACGACCATCGATT
1 ATGAAAAGGGATGGTGACGACCATCGATT
* ** * *
83302727 AATGAAAGGGGATGGTTTCAACCATCGAAT
1 -ATGAAAAGGGATGGTGACGACCATCGATT
* * *
83302757 ATGAAAAGGGACGGTTATGACCATC
1 ATGAAAAGGGATGGTGACGACCATC
83302782 ATTTAGTACA
Statistics
Matches: 200, Mismatches: 43, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
26 20 0.10
28 7 0.04
29 144 0.72
30 29 0.14
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCGATT
Found at i:83302761 original size:59 final size:58
Alignment explanation
Indices: 83302662--83302781 Score: 143
Period size: 59 Copynumber: 2.1 Consensus size: 58
83302652 AGCTTCGGTT
* *
83302662 ATCGATTATGAAAAGGGATGATGACGACCATCAATTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGATGACAACCATCAATTATGAAAAGGGACGGTGACGACC
* * ** * *
83302720 ATCGATTAATGAAAGGGGATGGTTTCAACCATCGAA-TATGAAAAGGGACGGTTATGACC
1 ATCGATT-ATGAAAAGGGATGATGACAACCATC-AATTATGAAAAGGGACGGTGACGACC
83302779 ATC
1 ATC
83302782 ATTTAGTACA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
58 7 0.13
59 43 0.83
60 2 0.04
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.23
Consensus pattern (58 bp):
ATCGATTATGAAAAGGGATGATGACAACCATCAATTATGAAAAGGGACGGTGACGACC
Found at i:83310477 original size:39 final size:39
Alignment explanation
Indices: 83310423--83310521 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
83310413 ATGTTTTTGA
83310423 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGG
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGG
* *
83310462 GTATTGTGATATATGCTTAAATGTTATGTGGTTATATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGG
* *
83310501 GCAATGTGATATATGCTTAAA
1 GTATTGTGATATATGCTTAAA
83310522 AATGAATATG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.44
Consensus pattern (39 bp):
GTATTGTGATATATGCTTAAATGTTATGTGATTATATGG
Found at i:83314346 original size:25 final size:25
Alignment explanation
Indices: 83314317--83314394 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
83314307 GAATGGCCAA
83314317 TGTGATGAAAGTGAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
* *** *
83314342 TGTGAT-AAAGCCG-A-ATGGCCA-A
1 TGTGATGAAAG-TGAACATGTATATG
*
83314364 TGTGATGAAAGTAAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
83314389 TGTGAT
1 TGTGAT
83314395 AAGGCCGAAT
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 6 0.16
23 9 0.24
24 9 0.24
25 13 0.35
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (25 bp):
TGTGATGAAAGTGAACATGTATATG
Found at i:83314368 original size:47 final size:47
Alignment explanation
Indices: 83314276--83314538 Score: 359
Period size: 47 Copynumber: 5.6 Consensus size: 47
83314266 TAATTGAATA
*
83314276 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
* *
83314324 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
83314371 AAAGTAAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
83314418 AATGTGAACATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
83314465 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
**
83314512 AATGTGAA-AGTGTATAAATGTGATAAG
1 AATGTGAACA-TGTATATGTGTGATAAG
83314539 TCCCGAAGGG
Statistics
Matches: 194, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 173 0.89
48 19 0.10
49 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:83316553 original size:40 final size:40
Alignment explanation
Indices: 83316496--83316998 Score: 771
Period size: 40 Copynumber: 12.6 Consensus size: 40
83316486 TCGAATGATG
* *
83316496 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
83316536 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
*
83316576 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316616 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316656 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316696 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316736 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316776 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316816 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316856 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316896 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83316936 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
83316976 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
83316999 ATCATGCTGG
Statistics
Matches: 426, Mismatches: 33, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.00
40 405 0.95
41 20 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:83316632 original size:80 final size:80
Alignment explanation
Indices: 83316496--83316998 Score: 859
Period size: 80 Copynumber: 6.3 Consensus size: 80
83316486 TCGAATGATG
* ** * *
83316496 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
* * * *
83316558 TTGGTGCGAGTTACTAAA
64 TTCGTGCTAGTGA-TATA
83316576 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
83316641 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
83316656 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
83316721 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
83316736 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
83316801 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
83316816 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
83316881 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
83316896 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
83316961 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* *
83316976 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
83316999 ATCATGCTGG
Statistics
Matches: 409, Mismatches: 11, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
80 382 0.93
81 20 0.05
82 7 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:83321378 original size:23 final size:23
Alignment explanation
Indices: 83321352--83321426 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
83321342 CGAATGGCCA
83321352 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
* *
83321375 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-AAGTGAAC--AT-G-TAT
83321399 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
83321422 ATGTG
1 ATGTG
83321427 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 5 0.13
23 16 0.41
24 11 0.28
25 5 0.13
26 1 0.03
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (23 bp):
ATGTGATGAAAGTGAACATGTAT
Found at i:83321382 original size:25 final size:25
Alignment explanation
Indices: 83321353--83321430 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
83321343 GAATGGCCAA
83321353 TGTGATGAAAGTGAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
* * *** *
83321378 TGTGAT-AAGGCCG-A-ATGGCCA-A
1 TGTGATGAAAG-TGAACATGTATATG
83321400 TGTGATGAAAGTGAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
83321425 TGTGAT
1 TGTGAT
83321431 AAGGCCGAAT
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAAAGTGAACATGTATATG
Found at i:83321403 original size:47 final size:47
Alignment explanation
Indices: 83321322--83321903 Score: 914
Period size: 47 Copynumber: 12.4 Consensus size: 47
83321312 AATGTGAAAG
*
83321322 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
83321370 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
83321417 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
83321464 GGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
83321511 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
83321558 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
83321605 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
83321652 TGTGTATGTGTGATAAGACCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
83321699 TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTAAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
83321746 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
83321793 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
83321840 TGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
83321886 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
83321904 TCCCGAAGGG
Statistics
Matches: 499, Mismatches: 34, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 486 0.97
48 12 0.02
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:83321452 original size:22 final size:22
Alignment explanation
Indices: 83321425--83321499 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
83321415 CATGTATATG
83321425 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * **
83321447 TGTGATGAATG-TGAATAGGTGTATA
1 TGTGAT-AAGGCCGAAT-GG-CCA-A
83321472 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
83321494 TGTGAT
1 TGTGAT
83321500 GAAAGTGAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:83323917 original size:40 final size:40
Alignment explanation
Indices: 83323861--83324224 Score: 360
Period size: 40 Copynumber: 9.1 Consensus size: 40
83323851 TCGAATGATG
* * *
83323861 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGATAAGACCCGAAGGCATTTGTGCGAAGTGA-TATA
* *
83323901 TCCGGGATAAGACCCGAAGGCATTTATGCGAATTGATATA
1 TCCGGGATAAGACCCGAAGGCATTTGTGCGAAGTGATATA
*
83323941 TCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGATATA
1 TCCGGGATAAGACCCGAAGGCATTTGTGCGAAGTGATATA
* *
83323981 TCCGGGATAAGACCCGAAGGCATTTATGCGAATTGATATA
1 TCCGGGATAAGACCCGAAGGCATTTGTGCGAAGTGATATA
* *
83324021 TCCGGGATAAGACCCGAAGGCGTTTGTGCGAATTGATATA
1 TCCGGGATAAGACCCGAAGGCATTTGTGCGAAGTGATATA
* * * * *
83324061 TCCGGGCTAAGTCCCGAAGAGCATTCGTGC-TAGTGATGTA
1 TCCGGGATAAGACCCGAAG-GCATTTGTGCGAAGTGATATA
* * * * *
83324101 TCCGGGCTAAGTCCCGAAGAGCATTCGTGC-TAGTGATGTA
1 TCCGGGATAAGACCCGAAG-GCATTTGTGCGAAGTGATATA
* ** * * *
83324141 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC-TAGTGATGTA
1 TCCGGGATAAGACCCGAAG-GCATTTGTGCGAAGTGATATA
* * ** * *
83324181 TCCGGGCTAGGTTCCGAAGAGCATTCGTGC-TAGTGATATA
1 TCCGGGATAAGACCCGAAG-GCATTTGTGCGAAGTGATATA
83324221 TCCG
1 TCCG
83324225 TGCTAAATCC
Statistics
Matches: 303, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
40 284 0.94
41 19 0.06
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGACCCGAAGGCATTTGTGCGAAGTGATATA
Found at i:83324092 original size:23 final size:23
Alignment explanation
Indices: 83324066--83324132 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
83324056 ATATATCCGG
83324066 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
83324089 GCT-AGT---G-A-TGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
83324106 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
83324129 GCTA
1 GCTA
83324133 GTGATGTATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
19 1 0.03
21 1 0.03
22 4 0.13
23 12 0.40
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:83324240 original size:40 final size:39
Alignment explanation
Indices: 83324054--83324259 Score: 295
Period size: 40 Copynumber: 5.2 Consensus size: 39
83324044 TTGTGCGAAT
*
83324054 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAG
83324094 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAG
83324134 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAG
*
83324174 TGATGTATCCGGGCTAGGTTCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAG
* * * * * *
83324214 TGATATATCCGTGCTAAATCCTGAAGAGCAATCATGCTGG
1 TGATGTATCCGGGCTAAGTCC-GAAGAGCATTCGTGCTAG
83324254 TGATGT
1 TGATGT
83324260 GTATTCGGGC
Statistics
Matches: 154, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 150 0.97
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
TGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAG
Found at i:83328568 original size:47 final size:47
Alignment explanation
Indices: 83328498--83329408 Score: 1574
Period size: 47 Copynumber: 19.4 Consensus size: 47
83328488 ATGATAGTAT
*
83328498 ATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328545 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328592 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
*
83328639 ATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
* * *
83328686 ATGTGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
* * * *
83328733 ATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328780 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328827 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328874 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328921 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83328968 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83329015 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83329062 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
83329109 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
* *
83329156 ATGTGTATGTGTGATAAGACCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
*
83329203 ATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
* *
83329250 ATGTATATGTGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
* * *
83329297 ATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGAT-AAATGTGAGC
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAA-GTGAAC
* * * * *
83329344 ATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-
1 ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
**
83329390 AGTGTATAAATGTGATAAG
1 A-TGTATATGTGTGATAAG
83329409 TCCCGAAGGG
Statistics
Matches: 823, Mismatches: 38, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 3 0.00
47 818 0.99
48 2 0.00
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAC
Found at i:83329259 original size:23 final size:23
Alignment explanation
Indices: 83329186--83329260 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
83329176 CGAATGGCCA
83329186 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
* *
83329209 ATGTG-TGATAAAGCCG-A-ATGGCCA-
1 ATGTGATG--AAAG-TGAACAT-G-TAT
83329233 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
83329256 ATGTG
1 ATGTG
83329261 TGACAAGGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 4 0.10
23 18 0.46
24 13 0.33
25 4 0.10
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (23 bp):
ATGTGATGAAAGTGAACATGTAT
Found at i:83329583 original size:37 final size:37
Alignment explanation
Indices: 83329527--83329606 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
83329517 CCGGGCTCTA
* * *
83329527 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
83329564 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
83329601 AAGACT
1 AAGACT
83329607 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:83343836 original size:38 final size:37
Alignment explanation
Indices: 83343785--83343859 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 37
83343775 ACATAACATC
* *
83343785 ATTAACAACATTAATAATCTAATGCTATGGAAATTAA
1 ATTAACAAAATTAACAATCTAATGCTATGGAAATTAA
*
83343822 ATTAACAAAAATTAACAATCTAATTCTATGGAAATTAA
1 ATTAAC-AAAATTAACAATCTAATGCTATGGAAATTAA
83343860 CTTATTCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 6 0.18
38 28 0.82
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.32
Consensus pattern (37 bp):
ATTAACAAAATTAACAATCTAATGCTATGGAAATTAA
Found at i:83346672 original size:39 final size:38
Alignment explanation
Indices: 83346628--83346705 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 38
83346618 GATCCTTGAC
83346628 CCTACACGAGAGTGCGCTAGCTCGCGTGGTAATCCAAA
1 CCTACACGAGAGTGCGCTAGCTCGCGTGGTAATCCAAA
*
83346666 NCCTACACGAGCGTGCGCTAGCTCGCGTGGTAATCCAAA
1 -CCTACACGAGAGTGCGCTAGCTCGCGTGGTAATCCAAA
83346705 C
1 C
83346706 GCGTAATTGT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 1 0.03
39 37 0.97
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (38 bp):
CCTACACGAGAGTGCGCTAGCTCGCGTGGTAATCCAAA
Found at i:83349178 original size:63 final size:63
Alignment explanation
Indices: 83349079--83349202 Score: 212
Period size: 63 Copynumber: 2.0 Consensus size: 63
83349069 TTGCTGTGTG
*
83349079 CACACGTGCTAGGAAAACGAGCATGTGTCCAGGCTATGTAACTCACTATTTGCAAATTAGAGC
1 CACACGTGCTAGGAAAAAGAGCATGTGTCCAGGCTATGTAACTCACTATTTGCAAATTAGAGC
* **
83349142 CACACGTGCTAGGAAAAAGAGCATGTGTCCTGGCTATGTAACTCACTATTTGTGAATTAGA
1 CACACGTGCTAGGAAAAAGAGCATGTGTCCAGGCTATGTAACTCACTATTTGCAAATTAGA
83349203 ATCACATGGG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (63 bp):
CACACGTGCTAGGAAAAAGAGCATGTGTCCAGGCTATGTAACTCACTATTTGCAAATTAGAGC
Found at i:83355688 original size:23 final size:22
Alignment explanation
Indices: 83355655--83355725 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
83355645 CCTGAGCTAA
* *
83355655 TGAACGATAAGCTCTAT-TGAGC
1 TGAACGGTAAGCTC-ATGCGAGC
83355677 TGAAACGGTAAGCTCATGCGAGC
1 TG-AACGGTAAGCTCATGCGAGC
* * *
83355700 TGAACAGTAAGCTCATACAAGC
1 TGAACGGTAAGCTCATGCGAGC
83355722 TGAA
1 TGAA
83355726 TCAATAAGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 25 0.60
23 17 0.40
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (22 bp):
TGAACGGTAAGCTCATGCGAGC
Found at i:83355712 original size:22 final size:22
Alignment explanation
Indices: 83355673--83355736 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
83355663 AAGCTCTATT
* *
83355673 GAGCTGAAACGGTAAGCTCATGC
1 GAGCTG-AACAGTAAGCTCATAC
83355696 GAGCTGAACAGTAAGCTCATAC
1 GAGCTGAACAGTAAGCTCATAC
* *
83355718 AAGCTGAATCAATAAGCTC
1 GAGCTGAA-CAGTAAGCTC
83355737 TAATAATCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 21 0.58
23 15 0.42
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (22 bp):
GAGCTGAACAGTAAGCTCATAC
Found at i:83364388 original size:44 final size:41
Alignment explanation
Indices: 83364317--83364478 Score: 146
Period size: 42 Copynumber: 3.8 Consensus size: 41
83364307 TGTCTTATCG
* * * *
83364317 TGTAAGACCACGTCTGGGGC-TTGGGCATCAATTTGTTATTTACA
1 TGTAAGACCATGTCTGGGACAGT-GGCATCAATATG--ATTT-CA
* *
83364361 TGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTCA
1 TGTAAGACCATGTCTGGGACAGTGGCATC-AATATGATTTCA
* * * *
83364403 TGTAAGACCCTGTCTAGGACAGTGGCAACATATATGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCATCA-ATATGATTTCA
* * *
83364445 TATAAGACCTTGTCTGGGACAGTGGCATCGATAT
1 TGTAAGACCATGTCTGGGACAGTGGCATCAATAT
83364479 TTGATTACTT
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.04
42 62 0.62
43 4 0.04
44 24 0.24
45 6 0.06
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCAATATGATTTCA
Found at i:83364417 original size:42 final size:42
Alignment explanation
Indices: 83364354--83364484 Score: 163
Period size: 42 Copynumber: 3.1 Consensus size: 42
83364344 TCAATTTGTT
*
83364354 ATTTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATG
1 ATTT-CATGTAAGACCATGTCTGGGACAGTGGCATCGTATATG
* * * *
83364397 ATTTCATGTAAGACCCTGTCTAGGACAGTGGCAACATATATG
1 ATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGTATATG
* * * *
83364439 ATTTCGTATAAGACCTTGTCTGGGACAGTGGCATCGATATTTG
1 ATTTCATGTAAGACCATGTCTGGGACAGTGGCATCG-TATATG
83364482 ATT
1 ATT
83364485 ACTTATAAGG
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 63 0.84
43 12 0.16
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (42 bp):
ATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGTATATG
Found at i:83369672 original size:16 final size:16
Alignment explanation
Indices: 83369651--83369685 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
83369641 CATGCCGATG
83369651 TTTCAGCT-TTTCGGCT
1 TTTCAGCTATTT-GGCT
83369667 TTTCAGCTATTTGGCT
1 TTTCAGCTATTTGGCT
83369683 TTT
1 TTT
83369686 AACAGTTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.09, C:0.20, G:0.17, T:0.54
Consensus pattern (16 bp):
TTTCAGCTATTTGGCT
Found at i:83381899 original size:28 final size:28
Alignment explanation
Indices: 83381867--83381936 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
83381857 AATGAGATTG
*
83381867 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
83381895 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
83381923 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
83381937 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:83388164 original size:93 final size:93
Alignment explanation
Indices: 83388005--83388175 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
83387995 GGATGGTTGA
*** * *
83388005 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
83388070 TGAGTCCGAGTTCGTAAGATGTAACTAG
66 TGAGTCCGAGTTCGTAAGATGTAACTAG
** * *
83388098 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
83388163 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83388176 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTAAGATGTAACTAG
Found at i:83388172 original size:46 final size:46
Alignment explanation
Indices: 83388003--83388176 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 46
83387993 TAGGATGGTT
**
83388003 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATATATGGATGC
*** * * * * * *
83388049 GAATGTCTGAACTTGTTGAGTTGAGTCCGAGTTCGTAAGATGTA-AC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-ATATGGATGC
* *
83388095 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATATATGGATGC
* *
83388142 GAGCACCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
83388177 CTTAGGGGCG
Statistics
Matches: 100, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
46 66 0.66
47 34 0.34
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATATATGGATGC
Found at i:83395672 original size:46 final size:45
Alignment explanation
Indices: 83395600--83395769 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 45
83395590 TGGTTGAGCA
83395600 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATCGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTAT-GATGCGAATG
* * *
83395646 TCCGAACTCGTTGAGTTGAGTTCGAGTT--CGTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCT-ATGATGCGAA-T--G
**
83395691 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTAT-GATGCGAATG
* * *
83395739 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
83395770 TTAGGGGCGG
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 54 0.53
47 27 0.26
48 2 0.02
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGATGCGAATG
Found at i:83395756 original size:93 final size:93
Alignment explanation
Indices: 83395597--83395767 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
83395587 GGATGGTTGA
*
83395597 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATCGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATCGATGCGAATGCCCGAACTCGTTGAGT
83395662 TGAGT-TCGAGTTCGTGAGATGTAACTAG
66 TGAGTCT-GAGTTCGTGAGATGTAACTAG
** * *
83395690 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATCGATGCGAATGCCCGAACTCGTTGAGT
83395755 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
83395768 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATCGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:83396034 original size:19 final size:20
Alignment explanation
Indices: 83395997--83396034 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83395987 ATAAGGTGGT
83395997 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83396017 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83396035 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83400182 original size:28 final size:28
Alignment explanation
Indices: 83400150--83400219 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
83400140 AATGAGATTG
83400150 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
83400178 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
83400206 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
83400220 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:83408068 original size:28 final size:28
Alignment explanation
Indices: 83408028--83408096 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
83408018 TAGTAAGTCT
*
83408028 GCACACTTAGTGCT-TAATAATCAAACCC
1 GCACACTTAGTGCTAT-ACAATCAAACCC
* *
83408056 GCACACTTAGTGCTATACAATTAAACTC
1 GCACACTTAGTGCTATACAATCAAACCC
*
83408084 TCACACTTAGTGC
1 GCACACTTAGTGC
83408097 CAATCTCATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATACAATCAAACCC
Found at i:83429428 original size:27 final size:27
Alignment explanation
Indices: 83429393--83429561 Score: 185
Period size: 27 Copynumber: 6.3 Consensus size: 27
83429383 ATTACTAAAA
* **
83429393 TACCTTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
83429420 TTCCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
83429447 CACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
** *
83429474 TACCCTTAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
83429501 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
83429528 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
83429555 TACCCTC
1 TACCCTC
83429562 AGTTTAAAAA
Statistics
Matches: 116, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:83429519 original size:81 final size:81
Alignment explanation
Indices: 83429401--83429560 Score: 266
Period size: 81 Copynumber: 2.0 Consensus size: 81
83429391 AATACCTTCG
* * *
83429401 ATTTGTAGAATTACCATTTTTCCCTCGATTTATAGAATTATCGTTTCACCCTCGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTACAAAAT
*
83429466 TACCGTTTTACCCTTA
66 TACCATTTTACCCTTA
* *
83429482 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTACAAAAT
83429547 TACCATTTTACCCT
66 TACCATTTTACCCT
83429561 CAGTTTAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (81 bp):
ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTACAAAAT
TACCATTTTACCCTTA
Found at i:83429584 original size:54 final size:54
Alignment explanation
Indices: 83429448--83429592 Score: 166
Period size: 54 Copynumber: 2.7 Consensus size: 54
83429438 TTATCGTTTC
* * * * *
83429448 ACCCTCGATTTACAAAATTACCGTTTTACCCTTAATTTATAGAATTACCATTTT
1 ACCCTCGATTTAAAAAATTATCGCTTTACCCTTAATTTACAAAATTACCATTTT
* * * *
83429502 ACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACCATTTT
1 ACCCTCGATTTAAAAAATTATCGCTTTACCCTTAATTTACAAAATTACCATTTT
* * *
83429556 ACCCTC-AGTTTAAAAAATTGTTGCTTTACCCTCAATT
1 ACCCTCGA-TTTAAAAAATTATCGCTTTACCCTTAATT
83429593 GTGAAATTAC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 77 0.99
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
ACCCTCGATTTAAAAAATTATCGCTTTACCCTTAATTTACAAAATTACCATTTT
Found at i:83429654 original size:27 final size:27
Alignment explanation
Indices: 83429624--83429749 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
83429614 TGTAGGATAG
83429624 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
83429651 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
83429678 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
83429705 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
83429732 AATGACCAAAATACCCCT
1 AATTACCAAAATACCCCT
83429750 GATTTACAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.04
27 78 0.92
28 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:83429663 original size:54 final size:54
Alignment explanation
Indices: 83429591--83429746 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
83429581 TTACCCTCAA
* * *
83429591 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * *
83429645 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* * ** *
83429699 TTGTGAAATTATCGAAATA-CCCTCAATTTGTAAAATGACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
83429747 CCTGATTTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.05
54 78 0.92
55 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:83429762 original size:54 final size:55
Alignment explanation
Indices: 83429628--83429775 Score: 167
Period size: 54 Copynumber: 2.7 Consensus size: 55
83429618 GGATAGAATT
* * * *
83429628 ACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATT
1 ACCAAAATACCCCTGA-TTTGTAAAATTATCGAAATACCCTCTAATTTGTAAAATG
* * * *
83429682 ACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTC-AATTTGTAAAATG
1 ACCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCTCTAATTTGTAAAATG
** *
83429736 ACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCT
1 ACCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCT
83429776 TGACTTTCTA
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 76 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (55 bp):
ACCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCTCTAATTTGTAAAATG
Found at i:83429770 original size:27 final size:27
Alignment explanation
Indices: 83429740--83429833 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 27
83429730 AAAATGACCA
*
83429740 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
83429767 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
83429796 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
83429823 AAATACCCTTG
1 AAATACCCTTG
83429834 GTTTGTAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
27 30 0.52
28 7 0.12
29 21 0.36
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:83429923 original size:53 final size:54
Alignment explanation
Indices: 83429843--83429958 Score: 164
Period size: 53 Copynumber: 2.2 Consensus size: 54
83429833 GGTTTGTAGA
* * * * *
83429843 TTTACCCTCGATTTATAGAATTACCATTTTACCCTC-GATTTATAGAATTA-CGT
1 TTTACCCTCGATTTACAAAATTACCATTTTACCCTCAG-TTTAAAAAATTATCAT
83429896 TTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCAT
1 TTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCAT
83429950 TTTACCCTC
1 TTTACCCTC
83429959 AATTGTGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
53 44 0.79
54 12 0.21
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (54 bp):
TTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCAT
Found at i:83429959 original size:27 final size:27
Alignment explanation
Indices: 83429843--83429958 Score: 155
Period size: 27 Copynumber: 4.3 Consensus size: 27
83429833 GGTTTGTAGA
*
83429843 TTTACCCTCGATTTATAGAATTACCAT
1 TTTACCCTCGATTTATAAAATTACCAT
* *
83429870 TTTACCCTCGATTTATAGAATTA-CGT
1 TTTACCCTCGATTTATAAAATTACCAT
*
83429896 TTTACCCTCGATTTACAAAATTACCAT
1 TTTACCCTCGATTTATAAAATTACCAT
* *
83429923 TTTACCCTC-AGTTTAAAAAATTATCAT
1 TTTACCCTCGA-TTTATAAAATTACCAT
83429950 TTTACCCTC
1 TTTACCCTC
83429959 AATTGTGAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 24 0.30
27 57 0.70
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (27 bp):
TTTACCCTCGATTTATAAAATTACCAT
Found at i:83430024 original size:27 final size:27
Alignment explanation
Indices: 83429994--83430229 Score: 174
Period size: 27 Copynumber: 8.7 Consensus size: 27
83429984 TGTAAGATAG
83429994 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*
83430021 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
83430048 AATTACCGAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * * *
83430075 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* **
83430102 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* *
83430129 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
* * * **
83430158 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
** * *
83430185 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
83430212 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
83430230 GTAGGATGAA
Statistics
Matches: 166, Mismatches: 35, Indels: 16
0.76 0.16 0.07
Matches are distributed among these distances:
26 3 0.02
27 137 0.83
28 8 0.05
29 18 0.11
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:83430035 original size:54 final size:54
Alignment explanation
Indices: 83429961--83430116 Score: 156
Period size: 54 Copynumber: 2.9 Consensus size: 54
83429951 TTACCCTCAA
* *
83429961 TTGTGAAATTACTGAAATACCCCT-GTAAGATAGAATTACCAAAATACC-CTTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAAG-TAAAATTACCAAAATACCAC-TAGT
* * ** * *
83430015 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAAGTAAAATTACCAAAATACCACTAGT
* * **
83430069 TTGTGAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAAGTAAAATTACCAAAATACC
83430117 CCTGATTTAC
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 4 0.05
54 78 0.91
55 4 0.05
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAAGTAAAATTACCAAAATACCACTAGT
Found at i:83430154 original size:370 final size:371
Alignment explanation
Indices: 83429472--83430218 Score: 1379
Period size: 370 Copynumber: 2.0 Consensus size: 371
83429462 AAATTACCGT
* *
83429472 TTTACCCTTAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGA
1 TTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGA
* **
83429537 TTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTGTTGCTTTACCCTCAATTGTGAAATTA
66 TTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCACTTTACCCTCAATTGTGAAATTA
*
83429602 CTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
131 CTGAAATACCCCTGTAAGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
83429667 CTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
196 CTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
*
83429732 AATGACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGACTTTCTAAAAATTATAGA
261 AATGACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAGA
83429797 AATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGA
326 AATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGA
* *
83429843 TTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTA-CGTTTTACCCTCGA
1 TTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGA
*
83429907 TTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCATTTTACCCTCAATTGTGAAATTA
66 TTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCACTTTACCCTCAATTGTGAAATTA
*
83429972 CTGAAATACCCCTGTAAGATAGAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC
131 CTGAAATACCCCTGTAAGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
83430037 CTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
196 CTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
*
83430102 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAGA
261 AATGACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAGA
83430167 AATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGA
326 AATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGA
83430213 TTTACC
1 TTTACC
83430219 AAAACACCCT
Statistics
Matches: 364, Mismatches: 12, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
370 317 0.87
371 47 0.13
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (371 bp):
TTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGA
TTTACAAAATTACCATTTTACCCTCAGTTTAAAAAATTATCACTTTACCCTCAATTGTGAAATTA
CTGAAATACCCCTGTAAGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
CTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
AATGACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAGA
AATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGA
Found at i:83430324 original size:27 final size:27
Alignment explanation
Indices: 83430260--83430324 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
83430250 TACCCCAATA
*
83430260 GGTAAAAAGACCGTAAAGCCCATGTAG
1 GGTAAAATGACCGTAAAGCCCATGTAG
* * *
83430287 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCATGTAG
83430314 GGTAAAATGAC
1 GGTAAAATGAC
83430325 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCATGTAG
Done.