Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 254 of 310
Found at i:83730228 original size:43 final size:42
Alignment explanation
Indices: 83730158--83730346 Score: 152
Period size: 43 Copynumber: 4.5 Consensus size: 42
83730148 AAAGCACCAT
* ***
83730158 TAAAGATCATG-TCTTTAGCGACATTTTTGGGGAAAACGTCAC
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTT-GGGAAAACGTCAC
* *
83730200 TAAAGCTCATGTTCTTTAGCGGTGTTTTTGGGGAAAGCAC-T-AT
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTT-GGGAAA--ACGTCAC
* * *
83730243 TAAAGGTCGTGTTCTTTAGCGGTGGTTTTGGGAAAAGCG-CTGC
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTTGGGAAAA-CGTC-AC
* * * * * *
83730286 TAAAGGTCATGTTCTGTAGTGGTGTTTCTGGAAAAACGCCGC
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTTGGGAAAACGTCAC
*
83730328 TAAAGGTCATGTTATTTAG
1 TAAAGGTCATGTTCTTTAG
83730347 TGGTATTTCT
Statistics
Matches: 121, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 37 0.31
43 79 0.65
44 1 0.01
45 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (42 bp):
TAAAGGTCATGTTCTTTAGCGGTGTTTTTGGGAAAACGTCAC
Found at i:83730332 original size:42 final size:42
Alignment explanation
Indices: 83730190--83730363 Score: 145
Period size: 42 Copynumber: 4.1 Consensus size: 42
83730180 ATTTTTGGGG
* * * * * *
83730190 AAAACGTCACTAAAGCTCATGTTCTTTAGCGGTGTTTTTGGG
1 AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
* ** * *
83730232 GAAA-GCACTATTAAAGGTCGTGTTCTTTAGCGGTGGTTT-TGGGA
1 AAAACGC-C-GCTAAAGGTCATGTTCTTTAGTGGT-GTTTCT-GGA
* * *
83730276 AAAGCGCTGCTAAAGGTCATGTTCTGTAGTGGTGTTTCTGGA
1 AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
* * *
83730318 AAAACGCCGCTAAAGGTCATGTTATTTAGTGGTATTTCTGGT
1 AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
83730360 AAAA
1 AAAA
83730364 GTGTGGCTAA
Statistics
Matches: 106, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 51 0.48
43 44 0.42
44 8 0.08
45 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (42 bp):
AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
Found at i:83734872 original size:46 final size:45
Alignment explanation
Indices: 83734638--83735000 Score: 211
Period size: 46 Copynumber: 7.7 Consensus size: 45
83734628 AGGGTATAAT
*
83734638 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CATC-CATCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTC-T-AG
* * * ** *
83734685 GTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-C-ATCTCTAG
* * * * *
83734734 GCC-AGCGCCATGTCCCAGACAAGGTCTTACACTAGCTCTCACATATC-CG
1 GCCGA-TG-CATGTCCCAGAC-ATGTCTTACACT-G-GCT-ACATCTCTAG
* * *
83734783 TGCCGATGCCATGTCCTAGACATGTTCTTACACTGAC-ATATCTCGTA-
1 -GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTACATCTC-TAG
* *
83734830 GCCGATGCGTGTCCCAGACATGTCTTACACTGGCGTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCTAG
* * * * * *
83734876 GTCGATGCATGTCCCAGACATGTCTTACATTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-ACATCTCTAG
* * *
83734922 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCT-C-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATC-T-CTA-G
83734970 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
83735001 AGCATACAAT
Statistics
Matches: 254, Mismatches: 39, Indels: 47
0.75 0.11 0.14
Matches are distributed among these distances:
44 11 0.04
45 17 0.07
46 73 0.29
47 61 0.24
48 22 0.09
49 32 0.13
50 32 0.13
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCTAG
Found at i:83738678 original size:22 final size:22
Alignment explanation
Indices: 83738650--83738725 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
83738640 TTCCACATCC
83738650 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
83738672 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
83738696 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
83738719 ATCACAT
1 ATCACAT
83738726 ATACTATCAT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:83738685 original size:47 final size:47
Alignment explanation
Indices: 83738622--83738728 Score: 187
Period size: 47 Copynumber: 2.3 Consensus size: 47
83738612 CCCTTCGGGA
*
83738622 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTCCACATCCATCACATTGGCCATTCGGC
* *
83738669 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTCCACATCCATCACATTGGCCATTCGGC
83738716 CTTATCACATATA
1 CTTATCACATATA
83738729 CTATCATGTA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTCCACATCCATCACATTGGCCATTCGGC
Found at i:83738893 original size:44 final size:44
Alignment explanation
Indices: 83738830--83738918 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
83738820 GAATACTCAT
*
83738830 AAGCTTACAATATCACGATTTATAATTCAAGTATGGGTTTAATC
1 AAGCTTACAATATCACGATTTAGAATTCAAGTATGGGTTTAATC
83738874 AAGCTTACAATATCACGATTTAGAATTCAAGTATGGGTTTAATC
1 AAGCTTACAATATCACGATTTAGAATTCAAGTATGGGTTTAATC
83738918 A
1 A
83738919 CTAGCTTATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (44 bp):
AAGCTTACAATATCACGATTTAGAATTCAAGTATGGGTTTAATC
Found at i:83740279 original size:56 final size:56
Alignment explanation
Indices: 83740208--83740327 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
83740198 TATTAGGTTA
83740208 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
83740264 TTGTCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
83740320 TTGCCCAT
1 TTGCCCAT
83740328 CATCCCTTGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:83752785 original size:26 final size:26
Alignment explanation
Indices: 83752749--83752800 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
83752739 GAGAGAAGTG
*
83752749 AAACTTCCTGAATGATGGATGAACTC
1 AAACTTCCTGAATGATGGATAAACTC
83752775 AAACTTCCTGAATGATGGATAAACTC
1 AAACTTCCTGAATGATGGATAAACTC
83752801 CTTGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
AAACTTCCTGAATGATGGATAAACTC
Found at i:83763986 original size:30 final size:30
Alignment explanation
Indices: 83763950--83764018 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
83763940 CACACGGGCA
* *
83763950 GACACACGGGCGTGTGTCTAGACCGTGTGT
1 GACACACGGGCGTGTGTCAAAACCGTGTGT
* *
83763980 GACACACAGGCGTGTGTCAAAACCGTGTTT
1 GACACACGGGCGTGTGTCAAAACCGTGTGT
*
83764010 GATACACGG
1 GACACACGG
83764019 CCTGGTAACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCAAAACCGTGTGT
Found at i:83765612 original size:48 final size:47
Alignment explanation
Indices: 83765525--83765902 Score: 288
Period size: 48 Copynumber: 7.8 Consensus size: 47
83765515 ATACTAGGGT
* * * *
83765525 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTAGG-ACATGGCATCGGCATCTA
* * * ** *
83765573 TATGAGAGCTAGTGTAAGATCATGTCTAGGACATGGCATCGACCCCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TAGGACATGGCATCGGCATCTA
* * * * *
83765621 CATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTAGG-ACATGGCATCGGCATCTA
* * * ** *
83765669 TATGAGAGCTAGTGTAAGATCATGTCTAGGACATGGCATCGACCCCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TAGGACATGGCATCGGCATCTA
* * * *
83765717 CATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTAGG-ACATGGCATCGGCATCTA
* * * * * * * * *
83765765 TATGATATCTAATGTAAGACCATGTCTGGGATATGGCATAGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TAGGACATGGCATCGGCATCTA
* * ** * *
83765813 CATGTGAGATAGTGTAAGACCATGTTTAGAACATGGCATCGGCACCGATA
1 TATGAGAGCCAGTGTAAGACCATG-TTAGGACATGGCATCGGCATC--TA
* *
83765863 TATGAAAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 TATGAGAGCCAGTGTAAGACCATG-TTAGGACATGGCATC
83765903 AGCTTCTTAC
Statistics
Matches: 248, Mismatches: 74, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
47 6 0.02
48 198 0.80
49 10 0.04
50 34 0.14
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (47 bp):
TATGAGAGCCAGTGTAAGACCATGTTAGGACATGGCATCGGCATCTA
Found at i:83765690 original size:96 final size:96
Alignment explanation
Indices: 83765526--83765902 Score: 547
Period size: 96 Copynumber: 3.9 Consensus size: 96
83765516 TACTAGGGTT
83765526 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
*
83765591 ATCATGTCTAGGACATGGCATCGACCCCGAC
66 ACCATGTCTAGGACATGGCATCGACCCCGAC
83765622 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
*
83765687 ATCATGTCTAGGACATGGCATCGACCCCGAC
66 ACCATGTCTAGGACATGGCATCGACCCCGAC
* * * *
83765718 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGATATCTAATGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
* * * * *
83765783 ACCATGTCTGGGATATGGCATAGGCCTCGAC
66 ACCATGTCTAGGACATGGCATCGACCCCGAC
** * * ** * *
83765814 ATGTGAGATAGTGTAAGACCATGTTTAGAACATGGCATCGGCACCGATATATGAAAGCCAGTGTA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCA--TTTATATGAGAGCTAGTGTA
* *
83765879 AGACCATGTTTGGGACATGGCATC
64 AGACCATGTCTAGGACATGGCATC
83765903 AGCTTCTTAC
Statistics
Matches: 257, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
96 222 0.86
98 35 0.14
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
ACCATGTCTAGGACATGGCATCGACCCCGAC
Found at i:83769103 original size:64 final size:64
Alignment explanation
Indices: 83768963--83769104 Score: 212
Period size: 64 Copynumber: 2.2 Consensus size: 64
83768953 TAATCGGATT
* *
83768963 ACCTATCTGGGCTAAATCCATAATGCACATGTATTCTTCGGGAAGCTCAATCATCCAAAGGAAC
1 ACCTATCTGGGCTAAATCCATAATGCACAAGTATTCTTCAGGAAGCTCAATCATCCAAAGGAAC
** * * *
83769027 ACCCGTCTGGGCTAAATCTATAATGCACAAGTATTCTTTAGGAGGCTCAATCATCCAAAGGAAC
1 ACCTATCTGGGCTAAATCCATAATGCACAAGTATTCTTCAGGAAGCTCAATCATCCAAAGGAAC
*
83769091 ACCTATCCGGGCTA
1 ACCTATCTGGGCTA
83769105 GATCGTTTTC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (64 bp):
ACCTATCTGGGCTAAATCCATAATGCACAAGTATTCTTCAGGAAGCTCAATCATCCAAAGGAAC
Found at i:83773046 original size:39 final size:41
Alignment explanation
Indices: 83772951--83773134 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
83772941 TTGAATGATG
*
83772951 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
83772990 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
83773030 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
83773069 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
83773109 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83773135 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:83773086 original size:79 final size:81
Alignment explanation
Indices: 83772951--83773134 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
83772941 TTGAATGATG
83772951 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
83773014 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
83773029 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
83773090 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
83773109 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83773135 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:83773156 original size:79 final size:79
Alignment explanation
Indices: 83773003--83773167 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
83772993 GGACTAAGAT
* ** *
83773003 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
83773068 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
83773082 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
83773144 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
83773161 CCGAAGG
1 CCGAAGG
83773168 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:83779588 original size:63 final size:64
Alignment explanation
Indices: 83779485--83779626 Score: 198
Period size: 63 Copynumber: 2.2 Consensus size: 64
83779475 CGAATTACCT
* * * *
83779485 GTCTGGGCTAAATCCATAATGTACATGTATTCTTCGGGAGGCTCAATCAT-CAAAGGAACACTC
1 GTCTGGGCTAAATCCATAATGCACATGTATTCTTCAGGAGGCTCAATCATCCAAAAGAACACCC
*
83779548 GTCTGGGCTAAATCCATAATGCACATGTATTCCTT-AGGAGGTTCAATCATCCAAAAGAACACCC
1 GTCTGGGCTAAATCCATAATGCACATGTATT-CTTCAGGAGGCTCAATCATCCAAAAGAACACCC
* *
83779612 GTCCGGGCTAGATCC
1 GTCTGGGCTAAATCC
83779627 CTTTCATAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
63 43 0.61
64 27 0.39
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (64 bp):
GTCTGGGCTAAATCCATAATGCACATGTATTCTTCAGGAGGCTCAATCATCCAAAAGAACACCC
Found at i:83791081 original size:93 final size:93
Alignment explanation
Indices: 83790922--83791092 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83790912 GGATGGTTGA
* ***
83790922 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACACCCGAACTCGTTGAGT
83790987 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
83791015 GCATCGGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACACCCGAACTCGTTGAGT
83791080 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83791093 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83791095 original size:46 final size:46
Alignment explanation
Indices: 83790923--83791097 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
83790913 GATGGTTGAG
* *
83790923 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** * * *
83790969 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A
*
83791014 GGCATCGGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* *
83791062 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83791098 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 2 0.02
46 62 0.58
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:83793856 original size:43 final size:43
Alignment explanation
Indices: 83793785--83793866 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
83793775 GATATATGTG
* *
83793785 GCATTCGAGCTCGTTGAGTGCTTCGAGTTAATTATGGATACGA
1 GCATCCGAGCTCGTTGAGTGCTTCGAGTTAATAATGGATACGA
* *
83793828 GCATCCGAGCTCGTTGAGTG-GTCTGAGTTCATAATGGAT
1 GCATCCGAGCTCGTTGAGTGCTTC-GAGTTAATAATGGAT
83793867 GCGATACATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGCTTCGAGTTAATAATGGATACGA
Found at i:83800384 original size:48 final size:48
Alignment explanation
Indices: 83800325--83800500 Score: 158
Period size: 48 Copynumber: 3.6 Consensus size: 48
83800315 TATGTATGCC
* *
83800325 AGTGTAGGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACATATATATGAGAGCT
** * ** * *
83800373 AGTGTAAGACCATGTCTACG-ACATGGCATC-AGCCTCGACATGTGAGCT
1 AGTGTAAGACCATGT-TTGGAACATGGCATCGA-CATATATATGAGAGCT
* * * *
83800421 AGTGTAAGACTATGTTTGGAACATAGCATCGACACCAATATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACA--TATATATGAGAGCT
* * *
83800471 AGTGTAAAACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTTTGGAACATGGCATC
83800501 AGCATCTTAC
Statistics
Matches: 98, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
47 3 0.03
48 59 0.60
49 3 0.03
50 33 0.34
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACATATATATGAGAGCT
Found at i:83800494 original size:98 final size:96
Alignment explanation
Indices: 83800325--83800503 Score: 259
Period size: 98 Copynumber: 1.8 Consensus size: 96
83800315 TATGTATGCC
* * ** * *
83800325 AGTGTAGGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATAGCATCGACAAATATATGAGAGCCAGTGTAAAACCATGTCT
83800390 ACGACATGGCATCAGCCTCGACATGTGAGCT
66 ACGACATGGCATCAGCCTCGACATGTGAGCT
*
83800421 AGTGTAAGACTATGTTTGGAACATAGCATCGACACCAATATATGAGAGCCAGTGTAAAACCATGT
1 AGTGTAAGACCATGTTTGGAACATAGCATCGACA--AATATATGAGAGCCAGTGTAAAACCATGT
**
83800486 CTGGGACATGGCATCAGC
64 CTACGACATGGCATCAGC
83800504 ATCTTACCCT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 31 0.43
98 41 0.57
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTTTGGAACATAGCATCGACAAATATATGAGAGCCAGTGTAAAACCATGTCT
ACGACATGGCATCAGCCTCGACATGTGAGCT
Found at i:83807864 original size:40 final size:40
Alignment explanation
Indices: 83807820--83808127 Score: 429
Period size: 40 Copynumber: 7.7 Consensus size: 40
83807810 CCAGCATGAT
* * * * *
83807820 TGCTCTTCGGGACCTAGCCCGGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
83807860 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
83807900 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83807940 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
83807980 TACTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
83808020 TGCTCTTCGGGACTTAGCCCGGATACAACACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
83808060 CACTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83808100 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
83808128 GTCGAGACCT
Statistics
Matches: 237, Mismatches: 31, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
39 4 0.02
40 233 0.98
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83808250 original size:38 final size:38
Alignment explanation
Indices: 83808181--83808255 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
83808171 GAATTTTAAT
*
83808181 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
83808219 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
83808256 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:83810751 original size:47 final size:47
Alignment explanation
Indices: 83810688--83810983 Score: 421
Period size: 47 Copynumber: 6.3 Consensus size: 47
83810678 CCCTTCGGGA
* * *
83810688 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
83810735 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
83810782 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
83810829 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
83810876 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
83810923 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
83810972 CCTATCACATAT
1 CTTATCACATAT
83810984 TTATACTTGT
Statistics
Matches: 230, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 186 0.81
49 44 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:83813659 original size:40 final size:39
Alignment explanation
Indices: 83813582--83813687 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
83813572 AAACCAAGTA
* * *
83813582 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTACCCCGGATATAG-TACTCGCACAAATG
* *
83813621 CCTTTGGGACTTACCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTACCCCGGATATAGTA-CTCGCACAAATG
*
83813661 CCTTCGGGACTTAGCCCGGATATAGTA
1 CCTTCGGGACTTACCCCGGATATAGTA
83813688 ANNNNNNNNN
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
39 13 0.22
40 45 0.78
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (39 bp):
CCTTCGGGACTTACCCCGGATATAGTACTCGCACAAATG
Found at i:83822145 original size:40 final size:40
Alignment explanation
Indices: 83822085--83822261 Score: 225
Period size: 40 Copynumber: 4.4 Consensus size: 40
83822075 AACCAAGTAA
* * *
83822085 CTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGC
1 CTTCGGGACTTACCCCGGATATAG-TAACTCGCACAAATGC
**
83822124 CTTCGGGACTTACCCCGGATATAGTAGTTCGCACAAATGC
1 CTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATGC
*
83822164 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATGC
* * *
83822204 CTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTACCCCGGATA-TAGTAACTCGCACAAATGC
83822244 CTTCGGGACTTAGCCCCG
1 CTTCGGGACTTA-CCCCG
83822262 TTATCATCCG
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 13 0.11
40 106 0.86
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATGC
Found at i:83827183 original size:13 final size:13
Alignment explanation
Indices: 83827158--83827191 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
83827148 CTACTCAAAA
83827158 CTTACTCTATATGC
1 CTTACT-TATATGC
83827172 CTTACTTATATGC
1 CTTACTTATATGC
83827185 CTTACTT
1 CTTACTT
83827192 CTATAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.21, C:0.26, G:0.06, T:0.47
Consensus pattern (13 bp):
CTTACTTATATGC
Found at i:83835760 original size:43 final size:43
Alignment explanation
Indices: 83835699--83835925 Score: 228
Period size: 43 Copynumber: 5.3 Consensus size: 43
83835689 GTGCCACTAT
* * *
83835699 ACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAGAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
* * *
83835742 ACGCCACTAAAGAACATGACCTTTTGTGGCGCTTTTCCCAGAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
** * *
83835785 ACGCTGCTAAACAACATGACCTTTAGCGGCGCTTTCCCCAAAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
* * * *
83835828 AC-ACAGCTAAAGAACATGATCTTTAACGGCACTTTCTCCTC--AA
1 ACGCCA-CTAAAGAACATGACCTTTAGCGGCGCTTT-TCC-CAAAA
* * * *
83835871 ACGCCGCTAAAG-ACATCACCTTTAGCGACGCTTTCCCCAAAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
*
83835913 ACACCACTAAAGA
1 ACGCCACTAAAGA
83835926 CCATATCAAT
Statistics
Matches: 148, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 29 0.20
43 112 0.76
44 3 0.02
45 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
Found at i:83835913 original size:85 final size:83
Alignment explanation
Indices: 83835699--83835925 Score: 258
Period size: 86 Copynumber: 2.7 Consensus size: 83
83835689 GTGCCACTAT
** * *
83835699 ACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAGAAACGCCACTAAAGAACATGACCT
1 ACGCCGCTAAAG-ACATGACCTTTAGCGGCGCTTTCCCCAAAAAC-ACACTAAAGAACATGACCT
*** *
83835764 TTTGTGGCGCTTTTCCCAGAA
64 TTAACGGCACTTTTCCCA-AA
* * *
83835785 ACGCTGCTAAACAACATGACCTTTAGCGGCGCTTTCCCCAAAAACACAGCTAAAGAACATGATCT
1 ACGCCGCTAAA-GACATGACCTTTAGCGGCGCTTTCCCCAAAAACACA-CTAAAGAACATGACCT
83835850 TTAACGGCACTTTCTCCTC-AA
64 TTAACGGCACTTT-TCC-CAAA
* *
83835871 ACGCCGCTAAAGACATCACCTTTAGCGACGCTTTCCCCAAAAACACCACTAAAGA
1 ACGCCGCTAAAGACATGACCTTTAGCGGCGCTTTCCCCAAAAACA-CACTAAAGA
83835926 CCATATCAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
85 40 0.33
86 77 0.64
87 3 0.02
88 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (83 bp):
ACGCCGCTAAAGACATGACCTTTAGCGGCGCTTTCCCCAAAAACACACTAAAGAACATGACCTTT
AACGGCACTTTTCCCAAA
Found at i:83841676 original size:7 final size:7
Alignment explanation
Indices: 83841664--83841712 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
83841654 TTTCCAATAG
83841664 TAAACCT
1 TAAACCT
83841671 TAAACCT
1 TAAACCT
83841678 TAAACCT
1 TAAACCT
* *
83841685 CAAACCA
1 TAAACCT
*
83841692 TAAACCA
1 TAAACCT
*
83841699 TAAACCA
1 TAAACCT
83841706 TAAACCT
1 TAAACCT
83841713 ATACCCTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCT
Found at i:83841683 original size:14 final size:14
Alignment explanation
Indices: 83841664--83841712 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
83841654 TTTCCAATAG
*
83841664 TAAACCTTAAACCT
1 TAAACCTTAAACCA
*
83841678 TAAACCTCAAACCA
1 TAAACCTTAAACCA
*
83841692 TAAACCATAAACCA
1 TAAACCTTAAACCA
83841706 TAAACCT
1 TAAACCT
83841713 ATACCCTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:83841720 original size:7 final size:7
Alignment explanation
Indices: 83841664--83841729 Score: 55
Period size: 7 Copynumber: 9.6 Consensus size: 7
83841654 TTTCCAATAG
*
83841664 TAAACCT
1 TAAACCC
*
83841671 TAAACCT
1 TAAACCC
83841678 TAAA-CC
1 TAAACCC
*
83841684 TCAAACCA
1 T-AAACCC
*
83841692 TAAACCA
1 TAAACCC
*
83841699 TAAACCA
1 TAAACCC
83841706 TAAA-CC
1 TAAACCC
*
83841712 TATACCC
1 TAAACCC
83841719 TAAACCC
1 TAAACCC
83841726 TAAA
1 TAAA
83841730 TATATATATT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
6 6 0.12
7 43 0.84
8 2 0.04
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:83841727 original size:14 final size:14
Alignment explanation
Indices: 83841664--83841729 Score: 64
Period size: 14 Copynumber: 4.8 Consensus size: 14
83841654 TTTCCAATAG
* *
83841664 TAAACCTTAAACCT
1 TAAACCCTAAACCA
83841678 TAAA-CCTCAAACCA
1 TAAACCCT-AAACCA
*
83841692 TAAACCATAAACCA
1 TAAACCCTAAACCA
* *
83841706 TAAA-CCTATACCC
1 TAAACCCTAAACCA
83841719 TAAACCCTAAA
1 TAAACCCTAAA
83841730 TATATATATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
13 12 0.29
14 28 0.67
15 2 0.05
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:83841914 original size:14 final size:14
Alignment explanation
Indices: 83841897--83841947 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
83841887 ATAAAACAAA
83841897 AAACCACAAACTCT
1 AAACCACAAACTCT
* *
83841911 AAACCATAAACCCT
1 AAACCACAAACTCT
*
83841925 AAACCAAAAACTCT
1 AAACCACAAACTCT
83841939 AAACC-CAAA
1 AAACCACAAA
83841948 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 3 0.09
14 29 0.91
ACGTcount: A:0.55, C:0.33, G:0.00, T:0.12
Consensus pattern (14 bp):
AAACCACAAACTCT
Found at i:83841955 original size:28 final size:28
Alignment explanation
Indices: 83841890--83841943 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
83841880 CCTAACTATA
* *
83841890 AAACAAAAAACCACAAACTCTAAACCAT
1 AAACAATAAACCAAAAACTCTAAACCAT
**
83841918 AAACCCTAAACCAAAAACTCTAAACC
1 AAACAATAAACCAAAAACTCTAAACC
83841944 CAAAATAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.11
Consensus pattern (28 bp):
AAACAATAAACCAAAAACTCTAAACCAT
Found at i:83842076 original size:7 final size:7
Alignment explanation
Indices: 83842066--83842099 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
83842056 CCCTATCCCC
83842066 TAAACCA
1 TAAACCA
*
83842073 TAAAACA
1 TAAACCA
*
83842080 TAAAACA
1 TAAACCA
83842087 TAAACCA
1 TAAACCA
83842094 TAAACC
1 TAAACC
83842100 TTTAACCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCA
Found at i:83842777 original size:41 final size:40
Alignment explanation
Indices: 83842669--83842778 Score: 157
Period size: 40 Copynumber: 2.7 Consensus size: 40
83842659 TTTTTTTTTG
**
83842669 CGGTGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATAA
1 CGGTGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAA
* * *
83842709 CGGCGTTTTTCAAAAAGCGCTGCTAATGCTCAATCTATAG
1 CGGTGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAA
*
83842749 TGGTGTTTTTCAAAAAAGCGCCGCTAATGC
1 CGGTGTTTTTC-AAAAAGCGCCGCTAATGC
83842779 CACTAAAGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
40 44 0.72
41 17 0.28
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (40 bp):
CGGTGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAA
Found at i:83843162 original size:40 final size:40
Alignment explanation
Indices: 83843103--83843237 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 40
83843093 TGGTCAACCA
*
83843103 ATAGCGGCATTTTTCAAAAAGCT-CCGCTAATGCTCGATCTT
1 ATAGCGGCGTTTTTCAAAAAG-TGCCGCTAATGCTCGATC-T
* *
83843144 ATAGCGGCGTTTTTAAAAAAGTGCCACTAATGCTCGATCT
1 ATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCT
* * *
83843184 ATAGCTGCGTTTTTCAAAAAGTGCTGCTAATGCTCGGTCT
1 ATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCT
* *
83843224 ATAGCAGTGTTTTT
1 ATAGCGGCGTTTTT
83843238 GGTCCTAGGG
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
40 49 0.59
41 34 0.41
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (40 bp):
ATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCT
Found at i:83843319 original size:23 final size:23
Alignment explanation
Indices: 83843293--83843435 Score: 87
Period size: 23 Copynumber: 6.2 Consensus size: 23
83843283 AGTTTATCAA
*
83843293 CTCATAAAAGCTTATTGTTTCAG
1 CTCATAAAAGCTTACTGTTTCAG
***
83843316 CTCATTGGAGCTTACTGTTTCAG
1 CTCATAAAAGCTTACTGTTTCAG
***
83843339 CTCATTGGAGCTTACTG-TTCAG
1 CTCATAAAAGCTTACTGTTTCAG
* * *
83843361 CTCGAT-AGAGCTTACCGATTCAG
1 CTC-ATAAAAGCTTACTGTTTCAG
* * *
83843384 CTCGAT-AGAGCTTACCGATTCAG
1 CTC-ATAAAAGCTTACTGTTTCAG
*
83843407 CTCA-ATAGAGCTTACTGTTCATCAG
1 CTCATA-AAAGCTTACTGTT--TCAG
83843432 CTCA
1 CTCA
83843436 GGAGGAGCTT
Statistics
Matches: 106, Mismatches: 8, Indels: 10
0.85 0.06 0.08
Matches are distributed among these distances:
22 18 0.17
23 80 0.75
25 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (23 bp):
CTCATAAAAGCTTACTGTTTCAG
Found at i:83843372 original size:45 final size:44
Alignment explanation
Indices: 83843301--83843452 Score: 144
Period size: 45 Copynumber: 3.3 Consensus size: 44
83843291 AACTCATAAA
* * *
83843301 AGCTTATTGTTTCAGCTCATTGGAGCTTACTGTTTCAGCTCATTGG
1 AGCTTACTGATTCAGCTCA-TAGAGCTTACTGTTTCAGCTCA-TGG
* * *
83843347 AGCTTACTG-TTCAGCTCGATAGAGCTTACCGATTCAGCTCGATAG
1 AGCTTACTGATTCAGCTC-ATAGAGCTTACTGTTTCAGCTC-ATGG
* *
83843392 AGCTTACCGATTCAGCTCAATAGAGCTTACTGTTCATCAGCTCAGGAGG
1 AGCTTACTGATTCAGCTC-ATAGAGCTTACTGTT--TCAGCTCA--TGG
83843441 AGCTTACTGATT
1 AGCTTACTGATT
83843453 ATGGCTCGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
45 36 0.41
46 31 0.36
47 1 0.01
48 7 0.08
49 12 0.14
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (44 bp):
AGCTTACTGATTCAGCTCATAGAGCTTACTGTTTCAGCTCATGG
Found at i:83845133 original size:93 final size:93
Alignment explanation
Indices: 83845024--83846031 Score: 1935
Period size: 93 Copynumber: 10.8 Consensus size: 93
83845014 GCCCCTAAGT
* ** * * *
83845024 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83845089 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845117 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845182 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845210 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845275 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845303 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845368 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845396 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845461 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845489 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845554 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845582 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845647 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845675 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845740 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845768 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845833 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845861 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83845926 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
83845954 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
83846019 TGAGTTCGGATGC
66 CGAGTTTGGATGC
83846032 TCAACCATCC
Statistics
Matches: 906, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 906 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTTGGATGCCTAGTTACATTTCAC
Found at i:83846485 original size:30 final size:30
Alignment explanation
Indices: 83846451--83846510 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
83846441 ATTTAATACG
*
83846451 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTACCCCTA
* * *
83846481 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTAGAAAAATTACACTTTTACCCCTA
83846511 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTACCCCTA
Found at i:83847865 original size:35 final size:36
Alignment explanation
Indices: 83847825--83847911 Score: 95
Period size: 35 Copynumber: 2.4 Consensus size: 36
83847815 CAGTCAGTAA
* * *
83847825 TATTCATTAACAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTCAATCAGTAACAATCAAT
* * * *
83847860 TATTCAGTAACAGTCAGTTATTCAGTAACAATCAAT
1 TATTCAATAACAATCAGTCAATCAGTAACAATCAAT
*
83847896 TATTCAATAATAATCA
1 TATTCAATAACAATCA
83847912 ATTATTCATT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 21 0.50
36 21 0.50
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (36 bp):
TATTCAATAACAATCAGTCAATCAGTAACAATCAAT
Found at i:83847880 original size:18 final size:18
Alignment explanation
Indices: 83847825--83847932 Score: 101
Period size: 18 Copynumber: 6.1 Consensus size: 18
83847815 CAGTCAGTAA
* *
83847825 TATTCATTAACAATCAGT
1 TATTCAGTAACAATCAAT
* * * *
83847843 CAATCAG-AACAATTATT
1 TATTCAGTAACAATCAAT
* *
83847860 TATTCAGTAACAGTCAGT
1 TATTCAGTAACAATCAAT
83847878 TATTCAGTAACAATCAAT
1 TATTCAGTAACAATCAAT
* *
83847896 TATTCAATAATAATCAAT
1 TATTCAGTAACAATCAAT
* *
83847914 TATTCATTATCAATCAAT
1 TATTCAGTAACAATCAAT
83847932 T
1 T
83847933 GATCTGTTAT
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
17 13 0.18
18 59 0.82
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.37
Consensus pattern (18 bp):
TATTCAGTAACAATCAAT
Found at i:83849634 original size:22 final size:24
Alignment explanation
Indices: 83849592--83849638 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
83849582 TGTATTACAA
83849592 ATGTATGTACATTATTTATCACAC
1 ATGTATGTACATTATTTATCACAC
*
83849616 ATGTAT-TTCATT-TTTATCACAC
1 ATGTATGTACATTATTTATCACAC
83849638 A
1 A
83849639 CTTGGCACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 5 0.23
24 6 0.27
ACGTcount: A:0.32, C:0.17, G:0.06, T:0.45
Consensus pattern (24 bp):
ATGTATGTACATTATTTATCACAC
Found at i:83850703 original size:43 final size:43
Alignment explanation
Indices: 83850641--83850723 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
83850631 CACGGGCGTG
*
83850641 TGTCTCAGCCGTGTACGACATACGGTCATGTTGCACAGCCGTA
1 TGTCTCAGCCGTGTACGACATACGGTCATATTGCACAGCCGTA
*
83850684 TGTCTCAGCCGTGTGCGACATACGGTCATATTGCACAGCC
1 TGTCTCAGCCGTGTACGACATACGGTCATATTGCACAGCC
83850724 ATGTGTCCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.25
Consensus pattern (43 bp):
TGTCTCAGCCGTGTACGACATACGGTCATATTGCACAGCCGTA
Found at i:83865750 original size:40 final size:41
Alignment explanation
Indices: 83865695--83865808 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 41
83865685 NNNNGACTAT
* *
83865695 ATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCA-A
1 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACCATA
*
83865735 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACCATA
* * * * *
83865776 A-CCGGGTTATGCCCCGAAGGCATTCGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGT
83865809 AGCTATATCC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
40 63 0.97
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.23
Consensus pattern (41 bp):
ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACCATA
Found at i:83865834 original size:39 final size:40
Alignment explanation
Indices: 83865690--83865834 Score: 98
Period size: 40 Copynumber: 3.6 Consensus size: 40
83865680 NNNNNNNNNG
* * ** * * *
83865690 ACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTT
1 ACTATAACCGGGTTAAACCCCGAAGGCATTCGAGCGAGTT
* * ** * *
83865730 ACCA-AATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTT
1 ACTATAA-CCGGGTTAAACCCCGAAGGCATTCGAGCGAGTT
**
83865770 ACTATAACCGGGTTATGCCCCGAAGGCATTCGAGCGAG-T
1 ACTATAACCGGGTTAAACCCCGAAGGCATTCGAGCGAGTT
* *
83865809 AGCTATATCC-GGTTAAACTCCGAAGG
1 A-CTATAACCGGGTTAAACCCCGAAGG
83865835 TACGTGATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.18
40 70 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ACTATAACCGGGTTAAACCCCGAAGGCATTCGAGCGAGTT
Found at i:83866733 original size:54 final size:54
Alignment explanation
Indices: 83866651--83866758 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
83866641 TATTTTCATA
83866651 GGAAAGCAACAGAAAGGACATATGAATAGTATATTATGAGATGTTAAAGTTTTT
1 GGAAAGCAACAGAAAGGACATATGAATAGTATATTATGAGATGTTAAAGTTTTT
* *
83866705 GGAAAGTAACAGAAAGGATATATGAATAGTATATTATGAGATGTTAAAGTTTTT
1 GGAAAGCAACAGAAAGGACATATGAATAGTATATTATGAGATGTTAAAGTTTTT
83866759 ATGAAACAGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.43, C:0.04, G:0.22, T:0.31
Consensus pattern (54 bp):
GGAAAGCAACAGAAAGGACATATGAATAGTATATTATGAGATGTTAAAGTTTTT
Found at i:83873783 original size:40 final size:40
Alignment explanation
Indices: 83873726--83873915 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
83873716 CGGATGATAA
*
83873726 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
83873766 CGGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * * *
83873806 -CTGGCTAAG-CCCGAAGGTATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
83873844 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * *
83873884 CCGGGCTATGTCCCGAACGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83873916 ACCTATATCC
Statistics
Matches: 130, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 25 0.19
39 16 0.12
40 89 0.68
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:83873866 original size:78 final size:79
Alignment explanation
Indices: 83873729--83873915 Score: 241
Period size: 78 Copynumber: 2.4 Consensus size: 79
83873719 ATGATAACCG
* * * * * *
83873729 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATTCGGGGCTAAGTCCCGAAGGCATTTGTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
83873794 GAGTTACTAATTCT
66 GAGTTACTAATTCT
*
83873808 GGCTAAG-CCCGAAGGTATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
** *
83873872 GAGTTACTATAACCG
66 GAGTTACTA-ATTCT
* * *
83873887 GGCTATGTCCCGAACGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
83873916 ACCTATATCC
Statistics
Matches: 92, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 59 0.64
79 15 0.16
80 18 0.20
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
GAGTTACTAATTCT
Found at i:83875705 original size:25 final size:25
Alignment explanation
Indices: 83875677--83875724 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83875667 TAAGCGAGAC
*
83875677 ATATCAGGAAGCTCAAAAAGAGCCT
1 ATATCAAGAAGCTCAAAAAGAGCCT
* *
83875702 ATATCAAGACGCTCATAAAGAGC
1 ATATCAAGAAGCTCAAAAAGAGC
83875725 TGCGTTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.17
Consensus pattern (25 bp):
ATATCAAGAAGCTCAAAAAGAGCCT
Found at i:83877893 original size:26 final size:26
Alignment explanation
Indices: 83877864--83877921 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
83877854 ACCCTCAGCT
83877864 AAATTTTGAT-GATTTTACCCCT-AGTA
1 AAATTTTG-TCGATTTTACCCCTGA-TA
*
83877890 AAATTTTGTCGATTTTGCCCCTGATA
1 AAATTTTGTCGATTTTACCCCTGATA
83877916 AAATTT
1 AAATTT
83877922 CAAGAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 1 0.03
26 27 0.93
27 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (26 bp):
AAATTTTGTCGATTTTACCCCTGATA
Found at i:83881179 original size:13 final size:14
Alignment explanation
Indices: 83881163--83881222 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 14
83881153 GTGTATGACA
83881163 CACGGTTATGT-TC
1 CACGGTTATGTGTC
* *
83881176 CACGGCTGTTTGTGAC
1 CACGG-T-TATGTGTC
83881192 ACACGGTTATGT-TC
1 -CACGGTTATGTGTC
*
83881206 CACGGTCATGTGTC
1 CACGGTTATGTGTC
83881220 CAC
1 CAC
83881223 TGGTGTTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
13 15 0.41
14 7 0.19
15 8 0.22
16 2 0.05
17 5 0.14
ACGTcount: A:0.17, C:0.27, G:0.25, T:0.32
Consensus pattern (14 bp):
CACGGTTATGTGTC
Found at i:83884475 original size:48 final size:48
Alignment explanation
Indices: 83884419--83884764 Score: 458
Period size: 48 Copynumber: 7.0 Consensus size: 48
83884409 TTGATGCATA
*
83884419 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
83884467 AGATATGTATATGTGGTAAAGCCGAATGGCTAATATGGAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
83884515 AGATGTGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATG
* *
83884569 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
** * *
83884621 AGATATGTATATGTGGTAAAGTTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* *
83884671 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
83884719 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83884765 GGCGATGTGT
Statistics
Matches: 273, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
48 132 0.48
49 2 0.01
50 45 0.16
51 2 0.01
52 46 0.17
53 1 0.00
54 45 0.16
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:83884595 original size:102 final size:100
Alignment explanation
Indices: 83884419--83884761 Score: 464
Period size: 102 Copynumber: 3.4 Consensus size: 100
83884409 TTGATGCATA
*
83884419 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTATGAGATATGTATATG
*
83884480 TGGTAAAGCCGAATGGCTAATATGGAATATGTATG
66 TGGTAAAGCCGAATGGCTAATATGAAATATGTATG
* *
83884515 AGATGTGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGTATGAGATATGTATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGTATGAGATATGTATA
** *
83884580 TGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
64 TGTGGTAAAGCCGAATGGCTAATATG--A-A-ATATGTATG
** *
83884621 AGATATGTATATGTGGTAAAGTTGAATGGTTAATGTGAAATATATA--TATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTATGAGATATGTATATG
* * *
83884684 TGGTAAAGTCGAATGGCTAGTGTGAAATATGTATG
66 TGGTAAAGCCGAATGGCTAATATGAAATATGTATG
*
83884719 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
83884762 GTAGGCGATG
Statistics
Matches: 217, Mismatches: 20, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
96 34 0.16
98 47 0.22
99 1 0.00
100 2 0.01
101 1 0.00
102 82 0.38
104 7 0.03
105 3 0.01
106 40 0.18
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (100 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTATGAGATATGTATATG
TGGTAAAGCCGAATGGCTAATATGAAATATGTATG
Found at i:83884714 original size:150 final size:151
Alignment explanation
Indices: 83884419--83884761 Score: 466
Period size: 150 Copynumber: 2.3 Consensus size: 151
83884409 TTGATGCATA
* *
83884419 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
* * *
83884480 TGGTAAAGCCGAATGGCTAATATGGAATATGTATGAGATGTGTATATGTGGTAAAGCCGAATGGC
66 TGGTAAAGCCGAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
83884545 TAATGCGAAATATATATATGTATG
131 TAATGCG--A-ATATATATGTATG
*
83884569 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
** * * *
83884634 TGGTAAAGTTGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGTCGAATG
66 TGGTAAAGCCGAATGGCTAATATG-AA-ATATATATGAGATATGTATATGTGGTAAAGCCGAATG
* *
83884699 GCTAGTGTG-A-A-ATATGTATG
129 GCTAATGCGAATATATATGTATG
*
83884719 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
83884762 GTAGGCGATG
Statistics
Matches: 172, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
150 85 0.49
151 1 0.01
152 2 0.01
153 1 0.01
154 41 0.24
155 1 0.01
156 41 0.24
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (151 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
TGGTAAAGCCGAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
TAATGCGAATATATATGTATG
Found at i:83885018 original size:37 final size:37
Alignment explanation
Indices: 83884910--83885018 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
83884900 GGAAATATAT
* * *
83884910 TCCGGGTAAGACTCGATGACCACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
83884947 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
83884984 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
83885019 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:83885544 original size:51 final size:51
Alignment explanation
Indices: 83885468--83885568 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
83885458 CCGTTTACTC
*
83885468 TGTTTCCTCTGTTTTATAGATCTCATTTGGAAGCTACAGGCTCGGGGATCT
1 TGTTTCCTCTGTTTTATAGATCTCATTTCGAAGCTACAGGCTCGGGGATCT
*
83885519 TGTTTTCTCTGTTTTATAGATCTCATTTCGAAGCTACAGGCTCGGGGATC
1 TGTTTCCTCTGTTTTATAGATCTCATTTCGAAGCTACAGGCTCGGGGATC
83885569 GTCAGCAACT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.40
Consensus pattern (51 bp):
TGTTTCCTCTGTTTTATAGATCTCATTTCGAAGCTACAGGCTCGGGGATCT
Found at i:83887403 original size:11 final size:11
Alignment explanation
Indices: 83887382--83887414 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
83887372 AAAATAAATA
83887382 ATTTTTA-TTT
1 ATTTTTATTTT
83887392 ATTTTTATTTT
1 ATTTTTATTTT
*
83887403 ATTTCTATTTT
1 ATTTTTATTTT
83887414 A
1 A
83887415 AGTAATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:83890071 original size:58 final size:59
Alignment explanation
Indices: 83890009--83890135 Score: 150
Period size: 59 Copynumber: 2.2 Consensus size: 59
83889999 TTTGGCATCC
* * *
83890009 TTTTCATATTAGGGATT-AACTTTTTTTTATT-CAAGTTAGATCTTAAACTTGACAATTA
1 TTTTCATATTACGGATTCAACTTTTTTTT-TTGCAAGTTAGACCCTAAACTTGACAATTA
** * * *
83890067 TTTTCGCATTACGGCTTCAACTTTTTTTTTTGCAAGTTAGACCCTGAATTTGACAATTA
1 TTTTCATATTACGGATTCAACTTTTTTTTTTGCAAGTTAGACCCTAAACTTGACAATTA
*
83890126 TTCTCATATT
1 TTTTCATATT
83890136 GAGGCTTTTG
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
58 15 0.27
59 41 0.73
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (59 bp):
TTTTCATATTACGGATTCAACTTTTTTTTTTGCAAGTTAGACCCTAAACTTGACAATTA
Found at i:83890807 original size:67 final size:67
Alignment explanation
Indices: 83890718--83891528 Score: 1604
Period size: 67 Copynumber: 12.1 Consensus size: 67
83890708 CACTAACTCC
* *
83890718 AATCAATATGCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83890783 GT
66 GT
83890785 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83890850 GT
66 GT
83890852 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83890917 GT
66 GT
83890919 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83890984 GT
66 GT
83890986 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891051 GT
66 GT
83891053 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891118 GT
66 GT
83891120 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891185 GT
66 GT
83891187 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891252 GT
66 GT
83891254 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891319 GT
66 GT
83891321 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891386 GT
66 GT
83891388 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891453 GT
66 GT
83891455 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
83891520 GT
66 GT
83891522 AATCCAT
1 AATCCAT
83891529 CTATATTTTA
Statistics
Matches: 742, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 742 1.00
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.43
Consensus pattern (67 bp):
AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
GT
Found at i:83902612 original size:34 final size:34
Alignment explanation
Indices: 83902528--83902613 Score: 145
Period size: 36 Copynumber: 2.5 Consensus size: 34
83902518 ATTCAATACA
83902528 AATATTAGTTAAGTATATAATCTGCCAAAGTCAT
1 AATATTAGTTAAGTATATAATCTGCCAAAGTCAT
*
83902562 ACTATTATAGTTAAGTATATAATCTGCCAAAGTCAT
1 AATA-T-TAGTTAAGTATATAATCTGCCAAAGTCAT
83902598 AATATTAGTTAAGTAT
1 AATATTAGTTAAGTAT
83902614 CAAACCTGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
34 14 0.29
35 2 0.04
36 32 0.67
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (34 bp):
AATATTAGTTAAGTATATAATCTGCCAAAGTCAT
Found at i:83904001 original size:7 final size:7
Alignment explanation
Indices: 83903989--83904014 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
83903979 AGAAATGGAA
83903989 AAAAAAT
1 AAAAAAT
83903996 AAAAAAT
1 AAAAAAT
83904003 AAAAAAT
1 AAAAAAT
83904010 AAAAA
1 AAAAA
83904015 GAAGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:83923850 original size:27 final size:27
Alignment explanation
Indices: 83923810--83923921 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
83923800 AGGAAGCGTC
*
83923810 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
83923837 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
83923864 CTGGTGGCTCTGCCA-AGATTATCTGTAT
1 CTGGTGGCTCTGCCACA-AATATCTG-AT
* * * *
83923892 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
83923918 CTGG
1 CTGG
83923922 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.73
28 14 0.19
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:83923914 original size:54 final size:54
Alignment explanation
Indices: 83923810--83923921 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
83923800 AGGAAGCGTC
*
83923810 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
83923864 CTGGTGGCTCTGCCA-AGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACA-AATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
83923918 CTGG
1 CTGG
83923922 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.63
55 18 0.35
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:83931856 original size:27 final size:27
Alignment explanation
Indices: 83931816--83931927 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
83931806 AGGAGGCGTC
* *
83931816 CTGGTGGCTATGCCATAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
83931843 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
83931870 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
83931898 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
83931924 CTGG
1 CTGG
83931928 CAGCCGTGCT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.07
27 53 0.73
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:83931920 original size:54 final size:54
Alignment explanation
Indices: 83931816--83931927 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
83931806 AGGAGGCGTC
* *
83931816 CTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
83931870 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
83931924 CTGG
1 CTGG
83931928 CAGCCGTGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:83936259 original size:16 final size:17
Alignment explanation
Indices: 83936220--83936256 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
83936210 GTTGAGATTG
* *
83936220 AATTGGAAAAAAAATTA
1 AATTGGGAAAAAAATGA
83936237 AATTGGGAAAAAAATGA
1 AATTGGGAAAAAAATGA
83936254 AAT
1 AAT
83936257 GGGGGTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.16, T:0.22
Consensus pattern (17 bp):
AATTGGGAAAAAAATGA
Found at i:83947933 original size:20 final size:20
Alignment explanation
Indices: 83947883--83947933 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
83947873 AAGGAAAAGC
* *
83947883 ACACACCCGTATGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
83947903 ACACGCCCGTGTGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
83947923 ACACGCCCGTG
1 ACACGCCCGTG
83947934 CCCCTCTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTGGGG
Found at i:83957889 original size:57 final size:57
Alignment explanation
Indices: 83957825--83957939 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 57
83957815 GCAAATGTAC
* * * *
83957825 GAATGGGTTGACCGTGGATCAATTAAGGCAATGACACAAGTATTATAGATAGAAAAT
1 GAATGGGTAGACCCTAGATCAATTAAGGCAATGACACAAGTATTATACATAGAAAAT
**
83957882 GAATGGGTAGACCCTAGATCAATTAAGGCAATGACATTAGTATTATACATAGAAAAT
1 GAATGGGTAGACCCTAGATCAATTAAGGCAATGACACAAGTATTATACATAGAAAAT
83957939 G
1 G
83957940 TACCCGTGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (57 bp):
GAATGGGTAGACCCTAGATCAATTAAGGCAATGACACAAGTATTATACATAGAAAAT
Found at i:83963232 original size:46 final size:46
Alignment explanation
Indices: 83963165--83963337 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
83963155 TGTAACCCGC
* *
83963165 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTAT
* * *
83963211 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTA--T
* * *
83963257 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTAT
*
83963304 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
83963338 GGATGCTCAA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 61 0.58
47 29 0.27
48 4 0.04
49 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTAT
Found at i:83963284 original size:93 final size:93
Alignment explanation
Indices: 83963172--83963343 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83963162 CGCCCATAAG
* *
83963172 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83963237 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
83963265 CGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83963330 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83963344 TCAATCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83976201 original size:38 final size:38
Alignment explanation
Indices: 83976157--83976232 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
83976147 AGGATAGGGT
*
83976157 AAGCTTTCTAGCTTAGTAAGACCGTATGAAAACAGTAA
1 AAGCTTTATAGCTTAGTAAGACCGTATGAAAACAGTAA
*
83976195 AAGCTTTATAGCTTAGTAAGACCGTATGAAAATAGTAA
1 AAGCTTTATAGCTTAGTAAGACCGTATGAAAACAGTAA
83976233 GCAATTTATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (38 bp):
AAGCTTTATAGCTTAGTAAGACCGTATGAAAACAGTAA
Found at i:83976924 original size:115 final size:115
Alignment explanation
Indices: 83976722--83976952 Score: 417
Period size: 115 Copynumber: 2.0 Consensus size: 115
83976712 GAAACTACAC
83976722 TCATTAATATTTAATTTCATATTTTACACAGCCTTTAACTCAATTTCCACAATTTTTGATGGATT
1 TCATTAATATTTAATTTCATATTTTACACAGCCTTTAACTCAATTTCCACAATTTTTGATGGATT
*
83976787 TTGAAATTCATACAACTACTGCTGTCCAACACTGTTTTGGTGCAATATAA
66 TTCAAATTCATACAACTACTGCTGTCCAACACTGTTTTGGTGCAATATAA
* *
83976837 TCATTAATATTTAATTTCATATTTTACTCAGCCTTTAACTCAATTTCCACAATTTTTGGTGGATT
1 TCATTAATATTTAATTTCATATTTTACACAGCCTTTAACTCAATTTCCACAATTTTTGATGGATT
* *
83976902 TTCAAATTTATACAACTGCTGCTGTCCAACACTGTTTTGGTGCAATATAA
66 TTCAAATTCATACAACTACTGCTGTCCAACACTGTTTTGGTGCAATATAA
83976952 T
1 T
83976953 GATAACTATC
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (115 bp):
TCATTAATATTTAATTTCATATTTTACACAGCCTTTAACTCAATTTCCACAATTTTTGATGGATT
TTCAAATTCATACAACTACTGCTGTCCAACACTGTTTTGGTGCAATATAA
Found at i:83978277 original size:20 final size:20
Alignment explanation
Indices: 83978252--83978290 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
83978242 AAAATTTCAA
83978252 TTATTTCACACAC-TTACAAC
1 TTATTTCACA-ACTTTACAAC
*
83978272 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
83978291 AATAGCCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:83983061 original size:26 final size:27
Alignment explanation
Indices: 83983030--83983089 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
83983020 CTGCCATGTT
83983030 CCTATGAGGTAAAAT-ACTAATATGCC
1 CCTATGAGGTAAAATGACTAATATGCC
*
83983056 CTTATGAGGTAAAATGACTAATATGCC
1 CCTATGAGGTAAAATGACTAATATGCC
83983083 CCTATGA
1 CCTATGA
83983090 TATGTATGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 14 0.45
27 17 0.55
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTATGAGGTAAAATGACTAATATGCC
Found at i:83989103 original size:19 final size:19
Alignment explanation
Indices: 83989081--83989120 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
83989071 AATAATTTTG
*
83989081 ATCAAGTAAAATTAAATTA
1 ATCAAATAAAATTAAATTA
*
83989100 ATCAAATTAAATTAAATTA
1 ATCAAATAAAATTAAATTA
83989119 AT
1 AT
83989121 ATGATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATCAAATAAAATTAAATTA
Found at i:83989579 original size:39 final size:37
Alignment explanation
Indices: 83989497--83989588 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 37
83989487 AAATATTGTT
83989497 TTAATAG-ATTTAATATTAAATTAAATTAAATACTTATC
1 TTAATAGTATTT--TATTAAATTAAATTAAATACTTATC
*
83989535 TTAATAGTATTTTATTAATTTAATATTAAAGTGA-TTATC
1 TTAATAGTATTTTATTAAATTAA-ATTAAA-T-ACTTATC
*
83989574 TTAATATTATATTTA
1 TTAATAGTAT-TTTA
83989589 ATCTAATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
37 10 0.21
38 13 0.28
39 19 0.40
40 5 0.11
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.50
Consensus pattern (37 bp):
TTAATAGTATTTTATTAAATTAAATTAAATACTTATC
Found at i:83989580 original size:68 final size:68
Alignment explanation
Indices: 83989506--83989639 Score: 182
Period size: 68 Copynumber: 2.0 Consensus size: 68
83989496 TTTAATAGAT
* *
83989506 TTAATATTAAATTAAAT-TAAATACTTATCTTAAT-AGTATTTTATTAATTTAATATTAAAGTGA
1 TTAATATTAAATTAAATCT-AATACTTATCTTAATAAGTATTATATT-ATTTAATATTAAAGTAA
83989569 TTATC
64 TTATC
* * * *
83989574 TTAATATTATATTTAATCTAATATTTATCTTGATAAGTATTATATTATTTAATATTAAAGTAATT
1 TTAATATTAAATTAAATCTAATACTTATCTTAATAAGTATTATATTATTTAATATTAAAGTAATT
83989639 A
66 A
83989640 AGTTTAATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
68 47 0.81
69 11 0.19
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (68 bp):
TTAATATTAAATTAAATCTAATACTTATCTTAATAAGTATTATATTATTTAATATTAAAGTAATT
ATC
Found at i:83991047 original size:53 final size:53
Alignment explanation
Indices: 83990983--83991089 Score: 160
Period size: 53 Copynumber: 2.0 Consensus size: 53
83990973 AATTTCAGAA
* * *
83990983 TTTTTAGTTGGGCCAATTAGTACAGTTTATTCATTGAAGTCTCCTCTGTTTCG
1 TTTTTAGTTGGGCAAATTAATACAGTTTATTCATTGAAGTCTCCCCTGTTTCG
* * *
83991036 TTTTTGGTTGGGCAAATTAATATAGTTTATTCATTGAAGTTTCCCCTGTTTCG
1 TTTTTAGTTGGGCAAATTAATACAGTTTATTCATTGAAGTCTCCCCTGTTTCG
83991089 T
1 T
83991090 CGTTCAGCAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.47
Consensus pattern (53 bp):
TTTTTAGTTGGGCAAATTAATACAGTTTATTCATTGAAGTCTCCCCTGTTTCG
Found at i:83991842 original size:38 final size:38
Alignment explanation
Indices: 83991799--83991959 Score: 160
Period size: 38 Copynumber: 4.0 Consensus size: 38
83991789 TTTCAAATTA
* *
83991799 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
1 ACATATATAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
83991837 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATATATAACCGTGGCATATCCACTTAGCACCACG-T--T
83991878 GAATCGATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATATA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
83991922 ACACATATAACCATGGTATATCCACTTAGCACCACGTT
1 ACATATATAACCGTGGCATATCCACTTAGCACCACGTT
83991960 TTTCCATTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 61 0.59
39 1 0.01
40 4 0.04
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 27 0.26
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATATATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:83993334 original size:40 final size:40
Alignment explanation
Indices: 83993279--83994314 Score: 1829
Period size: 40 Copynumber: 25.9 Consensus size: 40
83993269 CTCGCCGATG
*
83993279 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
83993319 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTTTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83993359 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83993399 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993439 ATCCCGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
83993479 ATCCGGGCTAAGTCTCGAAGAGCATTTGTGTTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83993519 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
83993559 ATCCGGGCTAAGTCTCGAAGAGCATTTGTGTTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83993599 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993639 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993679 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993719 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993759 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993799 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993839 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993879 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993919 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993959 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
83993999 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83994039 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83994079 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83994119 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
83994159 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* **
83994199 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGAAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
83994239 ATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
83994279 ATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
83994315 ATGTGTATTC
Statistics
Matches: 963, Mismatches: 33, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 963 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:83994528 original size:25 final size:25
Alignment explanation
Indices: 83994478--83994528 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
83994468 TGTGTAACAA
* *
83994478 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
83994503 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
83994528 C
1 C
83994529 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:83998201 original size:47 final size:45
Alignment explanation
Indices: 83998131--83998239 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 45
83998121 AGCTTAAGAT
*
83998131 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAA--GTGAATATGTGATAAGGC
* *
83998178 CGAATGGCCAATGTGAT-ATATGTGTAAGTGAATATGTGATAAGGT
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGAATATGTGATAAGGC
*
83998223 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
83998240 AAAGTGTGCA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 26 0.46
46 6 0.11
47 24 0.43
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (45 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGAATATGTGATAAGGC
Found at i:83998228 original size:45 final size:46
Alignment explanation
Indices: 83998125--83998239 Score: 144
Period size: 47 Copynumber: 2.5 Consensus size: 46
83998115 ATATCTAGCT
* *
83998125 TAAGATCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGA
1 TAAGGTCGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGA
* *
83998172 TAAGGCCGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGA
1 TAAGGTCGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGA
*
83998217 TAAGGTCGAATGACCAATTGTGA
1 TAAGGTCGAATGGCCAA-TGTGA
83998240 AAAGTGTGCA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 26 0.43
46 6 0.10
47 28 0.47
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (46 bp):
TAAGGTCGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGA
Found at i:84008538 original size:273 final size:273
Alignment explanation
Indices: 84008043--84008579 Score: 700
Period size: 273 Copynumber: 2.0 Consensus size: 273
84008033 TGTCCCGGTT
* *
84008043 GAAGTCAAAAAGGGAAATTCAATGGATAAACCATGGCTTACATGACTTGAGATCCTGCATGTGTT
1 GAAGTCAAAAAGGAAAATTCAATGGATAAACCATGACTTACATGACTTGAGATCCTGCATGTGTT
* *
84008108 CTAGAAAAGGATTTAGCAAGGACGAGCAATCCATTGATCTCAAATATAGGAAGGATCTAACCCGG
66 CTAGAAAAGAATTTAGCAAGGACGAGCAATCCATTGATCTCAAATATAGGAAGGATCTAACCCAG
* * * *
84008173 AAGGGTATTCCTTGAGTGATTGAGCCTCTCAAAGAATACGTGTGCATTGTGGATTCAGCCCGGAC
131 AAGGGTATTCCATGAGCGATCGAGCCTCTCAAAGAATACATGTGCATTGTGGATTCAGCCCGGAC
* *
84008238 GGGTAATTCGACTAGAGTCAAAATTTAGCCTAGACTGGTAATTCAGATCCGAGCTCACTACGGGT
196 GGGTAATCCGACTAGAGTCAAAATTTAGCCTAGACTGGTAATTCAGATCCAAGCTCACTACGGGT
84008303 GTTTGTCACTGTG
261 GTTTGTCACTGTG
** * * *
84008316 GAAGTCAAAAAGGAAAATTTGATGGATATACCATGACTTATATGCCTTGAGATCCTGCATGTGTT
1 GAAGTCAAAAAGGAAAATTCAATGGATAAACCATGACTTACATGACTTGAGATCCTGCATGTGTT
** * * ** * * * *
84008381 GC-AGAAAAGAATTTAGCCCGGACGGGTAATTGATTTATCTCAAATATTGGAAGGATCTAGCTCA
66 -CTAGAAAAGAATTTAGCAAGGACGAGCAATCCATTGATCTCAAATATAGGAAGGATCTAACCCA
* * * * * *
84008445 GACA-GGTGTTGCATGAGCGATCGAGCCTCTCGAAGAATATATGTGCATTGTGGATTTAGCTCGG
130 GA-AGGGTATTCCATGAGCGATCGAGCCTCTCAAAGAATACATGTGCATTGTGGATTCAGCCCGG
* * ** * * *
84008509 ACGTGTAATCCGACTAGGGTCTGAATTTAGCCTGGACTGTTAATTCAGATCCAAGCTCACTATGG
194 ACGGGTAATCCGACTAGAGTCAAAATTTAGCCTAGACTGGTAATTCAGATCCAAGCTCACTACGG
84008574 GTGTTT
259 GTGTTT
84008580 TTCGCTGTAA
Statistics
Matches: 224, Mismatches: 38, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
273 222 0.99
274 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (273 bp):
GAAGTCAAAAAGGAAAATTCAATGGATAAACCATGACTTACATGACTTGAGATCCTGCATGTGTT
CTAGAAAAGAATTTAGCAAGGACGAGCAATCCATTGATCTCAAATATAGGAAGGATCTAACCCAG
AAGGGTATTCCATGAGCGATCGAGCCTCTCAAAGAATACATGTGCATTGTGGATTCAGCCCGGAC
GGGTAATCCGACTAGAGTCAAAATTTAGCCTAGACTGGTAATTCAGATCCAAGCTCACTACGGGT
GTTTGTCACTGTG
Found at i:84009566 original size:48 final size:49
Alignment explanation
Indices: 84009492--84009598 Score: 162
Period size: 48 Copynumber: 2.2 Consensus size: 49
84009482 GACAGGACAG
* * *
84009492 GACAGAAATGAGCCATGTAAGTCCATATCAG-ATATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATATGGCATTGGA
*
84009540 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGA-ATATATATGGCATTGGA
84009590 GACAGGAAT
1 GACAGGAAT
84009599 AATTCATGTA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 28 0.53
50 25 0.47
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (49 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATATGGCATTGGA
Found at i:84009607 original size:50 final size:48
Alignment explanation
Indices: 84009492--84009615 Score: 158
Period size: 50 Copynumber: 2.5 Consensus size: 48
84009482 GACAGGACAG
* * *
84009492 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATATGGCTTTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAGATATATATGGCATTGGA
* * *
84009540 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAG--ATATATATGGCATTGGA
**
84009590 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGCCATGTAAGTCCAT
84009616 GTTGAAGACA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
48 28 0.42
50 38 0.58
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (48 bp):
GACAGGAATAAGCCATGTAAGTCCATATCAGATATATATGGCATTGGA
Found at i:84016520 original size:50 final size:46
Alignment explanation
Indices: 84016416--84016537 Score: 131
Period size: 50 Copynumber: 2.6 Consensus size: 46
84016406 GACAGGACAG
* * *
84016416 GACAGAAATGAGCCATGTAA-CTCCATATTAGATATATGGCTTTGGA
1 GACAGGAATGAACCATGTAAGC-CCATATTAGATATATGGCATTGGA
84016462 GACAGGAATGAACCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAACCATGTAAGCCCATATTAG----ATATATGGCATTGGA
* *
84016512 GACAGGAAT-AATTCATGTAAGTCCAT
1 GACAGGAATGAA-CCATGTAAGCCCAT
84016538 GTCGAAGACA
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
46 27 0.42
47 1 0.02
49 2 0.03
50 35 0.54
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (46 bp):
GACAGGAATGAACCATGTAAGCCCATATTAGATATATGGCATTGGA
Found at i:84023794 original size:33 final size:33
Alignment explanation
Indices: 84023755--84023817 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
84023745 TATATTAGAG
84023755 TTCATTTTTAGATTCAAGAATAAATTTTGTGTA
1 TTCATTTTTAGATTCAAGAATAAATTTTGTGTA
84023788 TTCATTTTTAGATTCAAGAATAAATTTTGT
1 TTCATTTTTAGATTCAAGAATAAATTTTGT
84023818 TTATCCACGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.49
Consensus pattern (33 bp):
TTCATTTTTAGATTCAAGAATAAATTTTGTGTA
Found at i:84024930 original size:5 final size:5
Alignment explanation
Indices: 84024920--84024951 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
84024910 GTAATTTGAT
*
84024920 AATTA AATTA AATTA AATTA AATTA AACTA AA
1 AATTA AATTA AATTA AATTA AATTA AATTA AA
84024952 AGCTTTTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (5 bp):
AATTA
Found at i:84029418 original size:46 final size:46
Alignment explanation
Indices: 84029254--84029427 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
84029244 TGTAACCCGC
* * * *
84029254 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * * *
84029300 CCATGAGTGAACTCGGAATCAACTCAACGGGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
84029350 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
84029393 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
84029428 AATGCTCAAC
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:84029420 original size:93 final size:93
Alignment explanation
Indices: 84029261--84029432 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
84029251 CGCCCATAAG
* * *
84029261 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
* *
84029326 ACGGGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* * *
84029354 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
84029419 ACGAGTTCGAATGC
66 ACGAGTTCGAATGC
84029433 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:84031890 original size:27 final size:26
Alignment explanation
Indices: 84031846--84031903 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
84031836 ACACCCTAAT
84031846 AGATAGAATGACTATTATGCCTCTATG
1 AGATAGAATGACTATTATGCC-CTATG
* * *
84031873 TGATAGAATGGCTGTTATGCCCTATG
1 AGATAGAATGACTATTATGCCCTATG
84031899 AGATA
1 AGATA
84031904 AGTGATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (26 bp):
AGATAGAATGACTATTATGCCCTATG
Found at i:84033157 original size:281 final size:280
Alignment explanation
Indices: 84032605--84033168 Score: 832
Period size: 281 Copynumber: 2.0 Consensus size: 280
84032595 AAAAGATAAA
* * *
84032605 TGTTTTTCAAAAATACCACAAATACGCAACCTATTTTAAAGACCTTCGACAAGAAATAACGTGTA
1 TGTTTTTCAAAAATAACACAAATACACAACCTATTTTAAAGACCTTCGACAAGAAATAACATGTA
* *
84032670 ATAAATTAATGATATTTTAATATGATTAACTTTTTGTCGAACGACTTGCATTTTGGAAAATAAAA
66 AGAAATTAATGATATTTTAATATGATTAACTTTTTGTCAAACGACTTGCATTTTGGAAAATAAAA
* * *
84032735 GACACCTTAAAAACATCGTTAAGATCACAAAGAGGATAAATATAGAACGGTTTTTTTTCAATGAT
131 GACACCTTAAAAACATCATTAAGATCACAAAGAGGATAAATATAGAACGGTTTGTTTTCAACGAT
* ** * * *
84032800 AACTCACTTTACGAAAAACACTTCAATGTGGCATTGCCAGATTCAGCCATAATGTCCAGGCCAGG
196 AACTCACTTTACGAAAAACACTTCAATGTGACATCACCAGATCCAGCCATAACGTCCAAGCCAGG
*
84032865 TTTGTGGTGTTACA-TTTGT
261 TTTGGGGTGTTACATTTTGT
* * * *
84032884 TGTTTTTCAAAAATAACACAAATACACAACCTGTTTTAAAGAGCTTCCG-CATGAAATAACATTT
1 TGTTTTTCAAAAATAACACAAATACACAACCTATTTTAAAGACCTT-CGACAAGAAATAACATGT
*
84032948 TAGAAATTAATGAT-TTTTAATATGATTAACTTTTT-TCCAAACGACTTGCATTTTGGAAAATAA
65 AAGAAATTAATGATATTTTAATATGATTAACTTTTTGT-CAAACGACTTGCATTTTGGAAAATAA
*
84033011 ACGAGACATCC-TAAAAACATCATTAAGATCACAAAGAGGTTAAATATAGAACGGGTTTGTTTTC
129 A--AGACA-CCTTAAAAACATCATTAAGATCACAAAGAGGATAAATATAGAAC-GGTTTGTTTTC
84033075 AACGATAACTCACTTTACGAAAAACACTTCAATGTGACATCACCAGATCCAGCCATAACGTCCAA
190 AACGATAACTCACTTTACGAAAAACACTTCAATGTGACATCACCAGATCCAGCCATAACGTCCAA
* *
84033140 GTCGGGTTTGGGGTGTTACATTTTGT
255 GCCAGGTTTGGGGTGTTACATTTTGT
84033166 TGT
1 TGT
84033169 ATCAGAGCGA
Statistics
Matches: 255, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
277 1 0.00
278 47 0.18
279 66 0.26
280 46 0.18
281 87 0.34
282 8 0.03
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (280 bp):
TGTTTTTCAAAAATAACACAAATACACAACCTATTTTAAAGACCTTCGACAAGAAATAACATGTA
AGAAATTAATGATATTTTAATATGATTAACTTTTTGTCAAACGACTTGCATTTTGGAAAATAAAA
GACACCTTAAAAACATCATTAAGATCACAAAGAGGATAAATATAGAACGGTTTGTTTTCAACGAT
AACTCACTTTACGAAAAACACTTCAATGTGACATCACCAGATCCAGCCATAACGTCCAAGCCAGG
TTTGGGGTGTTACATTTTGT
Found at i:84036232 original size:37 final size:37
Alignment explanation
Indices: 84036191--84036262 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
84036181 AAGAAAGTAC
84036191 TGACTGAAGCTCCAT-TCTTGATACAACCAGAGTCTGG
1 TGACTGAAGC-CCATGTCTTGATACAACCAGAGTCTGG
* * *
84036228 TGACTGAGGCCCCTGTCTTGATACAGCCAGAGTCT
1 TGACTGAAGCCCATGTCTTGATACAACCAGAGTCT
84036263 TGGAAAGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 3 0.10
37 28 0.90
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (37 bp):
TGACTGAAGCCCATGTCTTGATACAACCAGAGTCTGG
Found at i:84040812 original size:14 final size:15
Alignment explanation
Indices: 84040788--84040817 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
84040778 TTTTTTTTAA
84040788 ACGATAACTCACTTT
1 ACGATAACTCACTTT
84040803 ACGA-AACTCACTTT
1 ACGATAACTCACTTT
84040817 A
1 A
84040818 ATGTGACATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACGATAACTCACTTT
Found at i:84041002 original size:30 final size:30
Alignment explanation
Indices: 84040966--84041023 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
84040956 TGTGAAATTA
84040966 CATACTTTGATTCTTACCACTCTTTCATTG
1 CATACTTTGATTCTTACCACTCTTTCATTG
84040996 CATACTTTGATTCTTACCACTCTTTCAT
1 CATACTTTGATTCTTACCACTCTTTCAT
84041024 GCACATAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.21, C:0.28, G:0.05, T:0.47
Consensus pattern (30 bp):
CATACTTTGATTCTTACCACTCTTTCATTG
Found at i:84044127 original size:42 final size:42
Alignment explanation
Indices: 84044076--84044188 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
84044066 TTGCACGTAG
* * *
84044076 GACCATGTCTGGGACATTGGCATCGTATCTGACTT-CGTGTAA
1 GACCCTGTCTGGGACATTGGCATTGTATCTGA-TTACATGTAA
* * *
84044118 GACCCTGTCTGGGACAGTGGCATTGATGTTTGATTACATGTAA
1 GACCCTGTCTGGGACATTGGCATTG-TATCTGATTACATGTAA
*
84044161 GACCAC-CTCTGGGACATTGGCATTGTAT
1 GACC-CTGTCTGGGACATTGGCATTGTAT
84044189 ATGTTCTCTA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.44
43 32 0.54
44 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
GACCCTGTCTGGGACATTGGCATTGTATCTGATTACATGTAA
Found at i:84050606 original size:40 final size:39
Alignment explanation
Indices: 84050508--84050770 Score: 269
Period size: 40 Copynumber: 6.6 Consensus size: 39
84050498 TCCTCGTTCA
* * * *
84050508 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
84050547 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
84050586 GAATGCCTTCGGGACTTAACCCGGACTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
84050626 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
84050666 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
84050706 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
84050747 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84050771 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 40 0.21
40 143 0.73
41 12 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:84050730 original size:120 final size:119
Alignment explanation
Indices: 84050508--84050770 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 119
84050498 TCCTCGTTCA
* * *
84050508 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* *
84050573 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGACT-TAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGA-TATAATAACTTAGCAC
* * * * *
84050626 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
84050691 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
84050747 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
84050771 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:84050779 original size:41 final size:41
Alignment explanation
Indices: 84050702--84050779 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
84050692 TTTGTATCTC
* * *
84050702 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
84050743 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
84050780 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:84055476 original size:24 final size:24
Alignment explanation
Indices: 84055435--84055490 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
84055425 GTCTCAAAAG
* *
84055435 TACAGTAGATTGAACCTTGAAGAT
1 TACAGTGGTTTGAACCTTGAAGAT
*
84055459 TATAGTGGTTTGAACCTTGAAGAT
1 TACAGTGGTTTGAACCTTGAAGAT
84055483 TACAGTGG
1 TACAGTGG
84055491 GGGAAATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (24 bp):
TACAGTGGTTTGAACCTTGAAGAT
Found at i:84055844 original size:44 final size:44
Alignment explanation
Indices: 84055767--84056220 Score: 337
Period size: 44 Copynumber: 10.2 Consensus size: 44
84055757 CGGTAAAACC
* * * *
84055767 ACAAATCTTATCACTCTG-AGATTGCAATAGAGCAGATTAAAGTT
1 ACAAATCTTATCTCCCTGAAG-TTGCAGTGGAGCAGATTAAAGTT
* * * * * **
84055811 ACAAGTCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAAGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
84055855 AGCAAATCTTAT-TCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATG
1 A-CAAATCTTATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAG-TT
* * **
84055901 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
84055945 A-ATAATCCTATCTCCCTGAAGTAGCAGTTGAG-GGATTAAAGTT
1 ACA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * **
84055988 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TT
* * * * ** *
84056033 ACAAGTCTTATC-CTCTTGAAGTTGCAGTGGGGCAGACTGCAGATG
1 ACAAATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAG-TT
* * * **
84056078 GCAAGTCTTATCTCCCT-ATAGTTGCAATGGAGCAGATTAAAGCC
1 ACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGTT
* ** *
84056122 A-ATAATCCTATCTCTTTGAAGTTACAGTGGAGCAGATTAAAGTT
1 ACA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* *
84056166 ACAAATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
*
84056210 ACAAGTCTTAT
1 ACAAATCTTAT
84056221 TGAAGAAAGC
Statistics
Matches: 327, Mismatches: 68, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
43 36 0.11
44 147 0.45
45 142 0.43
46 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
Found at i:84055875 original size:45 final size:44
Alignment explanation
Indices: 84055767--84056207 Score: 284
Period size: 45 Copynumber: 10.0 Consensus size: 44
84055757 CGGTAAAACC
* * * * * **
84055767 ACAAATCTTATCACTCTG-AGATTGCAATAGAGCAGATTAAAGTT
1 ACAAATCTTATCTCCCTGAAG-TTGCAGTGGAGCAGACTAAAGAA
* * * *
84055811 ACAAGTCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAAGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAA
* * *
84055855 AGCAAATCTTAT-TCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATG
1 A-CAAATCTTATCT-CCCTGAAGTTGCAGTGGAGCAGACTAAAGA-A
* * * *
84055901 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAG-AA
* * * * * * **
84055946 A-TAATCCTATCTCCCTGAAGTAGCAGTTGAG-GGATTAAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAA
* * *
84055988 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAG-AA
* * * ** *
84056033 ACAAGTCTTATC-CTCTTGAAGTTGCAGTGGGGCAGACTGCAGATG
1 ACAAATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTAAAGA-A
* * * * *
84056078 GCAAGTCTTATCTCCCT-ATAGTTGCAATGGAGCAGATTAAAGCCA
1 ACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGACTAAAG-AA
* * ** * * **
84056123 A-TAATCCTATCTCTTTGAAGTTACAGTGGAGCAGATTAAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAA
* * *
84056166 ACAAATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAG
84056208 TTACAAGTCT
Statistics
Matches: 312, Mismatches: 69, Indels: 32
0.76 0.17 0.08
Matches are distributed among these distances:
42 1 0.00
43 34 0.11
44 134 0.43
45 141 0.45
46 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAA
Found at i:84056103 original size:177 final size:178
Alignment explanation
Indices: 84055796--84056201 Score: 613
Period size: 177 Copynumber: 2.3 Consensus size: 178
84055786 GATTGCAATA
* *
84055796 GAGCAGATTAAAGTTACAAGTCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAAGAAAGCAAA
1 GAGCAGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAAAACAAA
84055861 TCTTATTCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
66 TCTTATTCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
* *
84055926 AGTGGAACAGATTAAAGCCAATAATCCTATCTCCCTGAAG-TAGCAGTT
131 AATGGAACAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTA-CAGTG
* * * *
84055974 GAG-GGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGAAAACAAG
1 GAGCAGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAAAACAAA
* * *
84056038 TCTTA-TCCTCTTGAAGTTGCAGTGGGGCAGACTGCAGATGGCAAGTCTTATCTCCCT-ATAGTT
66 TCTTATTCC-CCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA-AGTT
* **
84056101 GCAATGGAGCAGATTAAAGCCAATAATCCTATCTCTTTGAAGTTACAGTG
129 GCAATGGAACAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTACAGTG
* *
84056151 GAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTACAATGGAGCAGA
1 GAGCAGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA
84056202 TTAAAGTTAC
Statistics
Matches: 205, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
176 4 0.02
177 154 0.75
178 47 0.23
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (178 bp):
GAGCAGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAAAACAAA
TCTTATTCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
AATGGAACAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTACAGTG
Found at i:84056429 original size:44 final size:42
Alignment explanation
Indices: 84056329--84056878 Score: 206
Period size: 44 Copynumber: 12.7 Consensus size: 42
84056319 TAAATCACGG
* * * * * **
84056329 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATGGC-AA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
*
84056370 ATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-CAA-A
* * * *
84056414 ATCCTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTAAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
* * *
84056456 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC-AA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-T-TA-A-AGCAAA
** * ** * *
84056501 ATCTCGTTTCCCGGAAGATTGCAGTGGAATCGATCAAAGCTATAAATCATAA
1 ATCTTATCTCCCTAAAG-TTGCAGTGG-A--G--C--AGAT-TAAAGCA-AA
* * * * * *
84056553 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC-AA
1 -ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
* * ** *
84056595 ACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAAATACCA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGCA-AA
* ** *
84056639 ATCTTATCTTCCTAAAGTTGCAGTAAAACAGATT---G---A
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
* ** * * * * *
84056675 AGC-TA-CTAACTAAAGCTACAATAGAACAGATTAAAGCTGTAAATCA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGC----AA--A
* * * * * **
84056721 CGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATGGC-AA
1 ---ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
*
84056765 ATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-CAA-A
* * * *
84056809 ATCCTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTAAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
* * *
84056851 GTCTTATCTCCCTGAAGTTGCAGCGGAG
1 ATCTTATCTCCCTAAAGTTGCAGTGGAG
84056879 TAAACTAACG
Statistics
Matches: 380, Mismatches: 88, Indels: 81
0.69 0.16 0.15
Matches are distributed among these distances:
34 21 0.06
35 2 0.01
36 3 0.01
37 1 0.00
41 92 0.24
42 59 0.16
43 7 0.02
44 104 0.27
45 18 0.05
46 13 0.03
47 2 0.01
49 4 0.01
50 4 0.01
51 24 0.06
52 12 0.03
53 14 0.04
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (42 bp):
ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCAAA
Found at i:84056655 original size:225 final size:223
Alignment explanation
Indices: 84056231--84056676 Score: 527
Period size: 225 Copynumber: 2.0 Consensus size: 223
84056221 TGAAGAAAGC
* * ** * *
84056231 AAGTCTTATCCCCCTGAAGTTGCAATGGGGCAGATTGAAGATAGTGAATCTCATTTTCCTAAAGC
1 AAGTCTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTCATTTCCCGAAAGC
* * ** *
84056296 TACAATAGAACAGATTAAAGCTGTAAATCACGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
66 TACAATAGAACAGATCAAAGCTATAAATCAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
** * * * *
84056361 TCATGGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCC
131 TCACAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGACAACAATCCTATCTCCC
* ** *
84056426 TAAAGTTGTAGTGGAGCAGATTGAAGTA
196 TAAAGTTGCAGTAAAACAGATTGAAGTA
* * * *
84056454 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTCGTTTCCCGGAAGA
1 AAGTCTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTCATTTCCCGAAAG-
* * * *
84056519 TTGCAGTGGAATC-GATCAAAGCTATAAATCATAAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
65 CTACAATAGAA-CAGATCAAAGCTATAAATCA-AAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
* * * * *
84056583 AGATCACATCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAA-ATACCAATCTTATC
128 AGATCACAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGACAACAATCCTATC
*
84056647 TTCCTAAAGTTGCAGTAAAACAGATTGAAG
192 TCCCTAAAGTTGCAGTAAAACAGATTGAAG
84056677 CTACTAACTA
Statistics
Matches: 184, Mismatches: 35, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
223 54 0.29
224 23 0.12
225 104 0.57
226 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (223 bp):
AAGTCTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTCATTTCCCGAAAGC
TACAATAGAACAGATCAAAGCTATAAATCAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
TCACAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGACAACAATCCTATCTCCC
TAAAGTTGCAGTAAAACAGATTGAAGTA
Found at i:84057057 original size:89 final size:89
Alignment explanation
Indices: 84056853--84057145 Score: 329
Period size: 89 Copynumber: 3.3 Consensus size: 89
84056843 GAAGTAAAGT
* * * *
84056853 CTTATCTCCCTGAAG-TTGCAGCGGAGTAAACT-AACGATAGCAGATCTTGTTTTCCTGTATTGG
1 CTTACCTCCCT-AAGTTTGCAGCGGAGCAGACTGAA-GATAGCAGATCTTGTCTTCCTGTATTGG
84056916 CAGCGAAGCAGATCGAAAACACCAGC
64 CAGCGAAGCAGATCGAAAACACCAGC
* * * * * * *
84056942 CTTGCCTTCTTGATTTTACAGTGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCA
1 CTTACCTCCCTAAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCA
* *
84057007 GCGAAGCAGATCGAAGACACTAGC
66 GCGAAGCAGATCGAAAACACCAGC
* * * * *
84057031 CTTACCTCCCTAAGTTTGCAGCGGAGCAGAATGAAAATAGCAGATTTTGTCTTCCTGTACTGACA
1 CTTACCTCCCTAAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCA
* *
84057096 GTGAAGCAGATCGAAAACACCAGT
66 GCGAAGCAGATCGAAAACACCAGC
* ** * *
84057120 CTTGCCTATCTGAGTTTGCAGTGGAG
1 CTTACCTCCCTAAGTTTGCAGCGGAG
84057146 TAGGTTAAAG
Statistics
Matches: 168, Mismatches: 34, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
88 1 0.01
89 165 0.98
90 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (89 bp):
CTTACCTCCCTAAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCA
GCGAAGCAGATCGAAAACACCAGC
Found at i:84057771 original size:22 final size:22
Alignment explanation
Indices: 84057711--84057768 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
84057701 AATCTTCAAG
84057711 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
84057730 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
84057752 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
84057769 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 9 0.27
23 11 0.33
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:84060337 original size:125 final size:125
Alignment explanation
Indices: 84060183--84060634 Score: 760
Period size: 125 Copynumber: 3.6 Consensus size: 125
84060173 AAATTTTGCA
* * * * **
84060183 AAACGGCGCCGTTTCACTACAGAAAATTAAGTTTTTAGTGACGTTTTGACTGAAAACTCCGCAAA
1 AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
** * *
84060248 GGTTATACATTAGTGGCGTTTTTCATAAATGCTGCAAATATTGCAATAACAATTTGACTT
66 GGTTATACATTAGTGGCGTTTTTCATAAACACCGCAAATATTGCAATAACAATTTGAATT
** *
84060308 AAACGGTGCAGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
1 AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
84060373 GGTTATACATTAGTGGCGTTTTTCATAAACACCGCAAATATTGCAATAACAATTTGAATT
66 GGTTATACATTAGTGGCGTTTTTCATAAACACCGCAAATATTGCAATAACAATTTGAATT
84060433 AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
1 AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
84060498 GGTTATACATTAGTGGCGTTTTTCATAAACACCGCAAATATTGCAATAACAATTTGAATT
66 GGTTATACATTAGTGGCGTTTTTCATAAACACCGCAAATATTGCAATAACAATTTGAATT
* *
84060558 AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCGTTTTGACTGAAAATGCCGCAAA
1 AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
*
84060623 TGTTATACATTA
66 GGTTATACATTA
84060635 ACAATTTAGA
Statistics
Matches: 310, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 310 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (125 bp):
AAACGGCACCGTTTCACTACAGGAAATTAAGTTTTTAGTGGCATTTTGACTGAAAAAGCCGCAAA
GGTTATACATTAGTGGCGTTTTTCATAAACACCGCAAATATTGCAATAACAATTTGAATT
Found at i:84061538 original size:8 final size:8
Alignment explanation
Indices: 84061525--84061549 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
84061515 AATTAACTCT
84061525 CTCTCTTA
1 CTCTCTTA
84061533 CTCTCTTA
1 CTCTCTTA
84061541 CTCTCTTA
1 CTCTCTTA
84061549 C
1 C
84061550 ATCTGTAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.48
Consensus pattern (8 bp):
CTCTCTTA
Found at i:84063609 original size:17 final size:18
Alignment explanation
Indices: 84063584--84063618 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
84063574 TATGTATATT
*
84063584 TGTATATTTAT-TTTTTA
1 TGTACATTTATATTTTTA
84063601 TGTACATTTATATTTTTA
1 TGTACATTTATATTTTTA
84063619 AAACTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (18 bp):
TGTACATTTATATTTTTA
Found at i:84071821 original size:44 final size:44
Alignment explanation
Indices: 84071740--84072397 Score: 446
Period size: 44 Copynumber: 15.1 Consensus size: 44
84071730 AGTAGATCGA
* *
84071740 AGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCAAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
* * * * *
84071785 AGATATTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
1 AGATCTTGTCTTCCTATATTGGAGTGAAGTAGATCAAAGAAAGC
* * * * * *
84071829 AGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-ATGT
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
* * * * *
84071873 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
* * *
84071918 AGATCTTGTCTTCATATATTGGTGTGAAGTAGATCAAAGACAGC
1 AGATCTTGTCTTCCTATATTGGAGTGAAGTAGATCAAAGAAAGC
* * * *
84071962 AAATCCTGACTTCCTATATTGGTAG-GAAGTGGATC---G--A--
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
*
84071999 AGATCTTGTCTTCCCATATTAGTG-GTGAAGTAGATCAAAGAAAGC
1 AGATCTTGTCTTCCTATATT-G-GAGTGAAGTAGATCAAAGAAAGC
* * *
84072044 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAA-ATAA-C
1 AGATCTTGTCTTCCTATATTGGAGTGAAGTAGATC-AAAGA-AAGC
* *
84072088 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATC---G--A--
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
*
84072125 AGATCTTGTCTTCCCATATTAGTG-GTGAAGTAGATCAAAGAAAGC
1 AGATCTTGTCTTCCTATATT-G-GAGTGAAGTAGATCAAAGAAAGC
* * * *
84072170 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGAGTGAAGTAGATCAAAGAAAGC
* * * * * ** *
84072214 AAATCCTGCCTTCCTATATTGGTAGCGAAGTGGATTGAAGATAGC
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
* * * * * * **
84072259 AGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAAT
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGAAAGC
* * *
84072304 AGATCTTGTCTTCATGTATTGGCA-TGAAGTAGATCAAGGATAA-C
1 AGATCTTGTCTTCCTATATTGG-AGTGAAGTAGATCAAAGA-AAGC
* ** * * *
84072348 AAATCTTACCTTCCTATACTGACAGTGAAGTAGAT-AAAAAATAGC
1 AGATCTTGTCTTCCTATATTG-GAGTGAAGTAGATCAAAGAA-AGC
84072393 AGATC
1 AGATC
84072398 ATATCCAGTC
Statistics
Matches: 478, Mismatches: 100, Indels: 70
0.74 0.15 0.11
Matches are distributed among these distances:
37 36 0.08
38 21 0.04
39 3 0.01
41 3 0.01
43 5 0.01
44 233 0.49
45 177 0.37
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (44 bp):
AGATCTTGTCTTCCTATATTGGAGTGAAGTAGATCAAAGAAAGC
Found at i:84072064 original size:126 final size:126
Alignment explanation
Indices: 84071695--84072345 Score: 917
Period size: 126 Copynumber: 5.0 Consensus size: 126
84071685 CAGATTAATG
*
84071695 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATCTTGTCTTCCCATATT
1 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGTCTTCCCATATT
*
84071760 GGTGGTGAAGTAGATCAAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCA
66 GGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCA
84071821 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGTAGATCTTGTCTTC
1 AAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATC---GA---AGATCTTGTCTTC
* * * * *
84071886 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGTGTGAAGTAGA
59 CCATATTGGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
84071951 TCA
124 TCA
* * *
84071954 AAGACAGCAAATCCTGACTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGTCTTCCCATATT
1 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGTCTTCCCATATT
*
84072019 AGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
66 GGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-A
*
84072081 AA-ATAACAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGTCTTCCCATATT
1 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGTCTTCCCATATT
* *
84072145 AGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
66 GGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCA
* * * * *
84072206 AAGAAAGCAAATCCTGCCTTCCTATATTGGTAGCGAAGTGGATTGAAGATAGCAGATCTTATCTT
1 AAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGA-T--CG--A--AGATCTTGTCTT
* * * ** *
84072271 CCCATACTGGTGGCGAAGTAGATCGAAGAAAATAGATCTTGTCTTCATGTATTGGCATGAAGTAG
58 CCCATATTGGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
84072336 ATCA
123 ATCA
*
84072340 AGGATA
1 AAGATA
84072346 ACAAATCTTA
Statistics
Matches: 471, Mismatches: 37, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
125 2 0.00
126 251 0.53
127 20 0.04
128 1 0.00
129 2 0.00
130 3 0.01
132 11 0.02
133 105 0.22
134 76 0.16
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (126 bp):
AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGTCTTCCCATATT
GGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCA
Found at i:84072073 original size:82 final size:81
Alignment explanation
Indices: 84071918--84072081 Score: 204
Period size: 82 Copynumber: 2.0 Consensus size: 81
84071908 CGAAGAAAGC
* * * *
84071918 AGATCTTGTCTTCATATATTGGTGTGAAGTAGATCAAAGACAGCAAATCCTGACTTCCTATATTG
1 AGATCTTGTCTTCACATATTAGTGTGAAGTAGATCAAAGAAAGCAAATCCTGACTTCATATATTG
*
84071983 GTAGGAAGTGGATCGA
66 GTAGGAAGTAGATCGA
* * * * *
84071999 AGATCTTGTCTTCCCATATTAGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCACATATTAGT-GTGAAGTAGATCAAAGAAAGCAAATCCTGACTTCATATATT
*
84072064 GG-CGTGAAGTAGATCGA
65 GGTAG-GAAGTAGATCGA
84072081 A
1 A
84072082 AATAACAGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 21 0.30
82 49 0.70
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (81 bp):
AGATCTTGTCTTCACATATTAGTGTGAAGTAGATCAAAGAAAGCAAATCCTGACTTCATATATTG
GTAGGAAGTAGATCGA
Found at i:84072719 original size:44 final size:43
Alignment explanation
Indices: 84072449--84072778 Score: 181
Period size: 44 Copynumber: 7.6 Consensus size: 43
84072439 AAAGAGAGCG
* * * *
84072449 AATCTTATCTCCCTGAAGTTGGAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAA-ACAAC
* * * **
84072493 AGTCCTATCTCCCTGAAGTTACAGTGAAGTGGATTAAAATC-AC
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAA-CAAC
* * ** *
84072536 AGATCTTATCTCTCTGAAGTTGCAGAG-AGCAGA-T--CGCATC
1 A-ATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACAAC
* * * * * * *
84072576 TAGTCTTATCTCCCTGAAGTTACAATGCAGCAGACTAAGTA-AGC
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAA-AACAAC
* ** * ***
84072620 AAGTCTTATC-CTCCTAAAGTTGCAGT-AAGGCAGAAGGAAGATGGC
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGAA-GCAG-ATTAAAACAAC
* * *
84072665 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGACAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAA-ACAAC
* *
84072710 AATCTTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACAAC
* *
84072753 AGATCTTATCTCTCTAAAGTTGCAGT
1 A-ATCTTATCTCCCTGAAGTTGCAGT
84072779 AGAGTAGATC
Statistics
Matches: 214, Mismatches: 53, Indels: 38
0.70 0.17 0.12
Matches are distributed among these distances:
39 1 0.00
40 21 0.10
41 7 0.03
42 2 0.01
43 13 0.06
44 137 0.64
45 29 0.14
46 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACAAC
Found at i:84074332 original size:13 final size:14
Alignment explanation
Indices: 84074314--84074343 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
84074304 TTAAAAATAA
84074314 ATTATTATTATT-T
1 ATTATTATTATTAT
84074327 ATTATTATTATTAT
1 ATTATTATTATTAT
84074341 ATT
1 ATT
84074344 CATATGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATTATTATTAT
Found at i:84076758 original size:12 final size:12
Alignment explanation
Indices: 84076741--84076770 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
84076731 TTTAGTTTAA
84076741 AATGGAGGTGAG
1 AATGGAGGTGAG
*
84076753 AATGGAGTTGAG
1 AATGGAGGTGAG
84076765 AATGGA
1 AATGGA
84076771 ACATGCTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (12 bp):
AATGGAGGTGAG
Done.