Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 256 of 310
Found at i:84399737 original size:74 final size:75
Alignment explanation
Indices: 84399602--84399755 Score: 265
Period size: 74 Copynumber: 2.1 Consensus size: 75
84399592 ATATATAGAA
84399602 AAAGTTAACAAAAAATTCAAAAAGAATAATTTTAGGACTTAAATAAGTAACTTAACGATTCAAAT
1 AAAGTTAACAAAAAATTCAAAAAGAATAATTTTAGGACTTAAATAAGTAACTTAACGATTCAAAT
*
84399667 TTATTATATT
66 TTATTATACT
* * *
84399677 AAAGTTAATAAAAAATTCAAAAAGAATAA-TTTGGGACTTAAATAAGTAACTTAACTATTCAAAT
1 AAAGTTAACAAAAAATTCAAAAAGAATAATTTTAGGACTTAAATAAGTAACTTAACGATTCAAAT
84399741 TTATTATACT
66 TTATTATACT
84399751 AAAGT
1 AAAGT
84399756 ATTTTTTTCT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
74 47 0.63
75 28 0.37
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (75 bp):
AAAGTTAACAAAAAATTCAAAAAGAATAATTTTAGGACTTAAATAAGTAACTTAACGATTCAAAT
TTATTATACT
Found at i:84403132 original size:24 final size:24
Alignment explanation
Indices: 84403069--84403137 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
84403059 TCCGGGTTAT
*
84403069 ATAA-CGGGAAGCTCATAAGAGCC
1 ATAATCGGGAAGCTCATAAGAACC
* ** *
84403092 ATAATCGAGAATTTCATAAAGAATC
1 ATAATCGGGAAGCTCAT-AAGAACC
84403117 AT-ATCGGGAAGCTCATGAAGA
1 ATAATCGGGAAGCTCAT-AAGA
84403138 GCCTATCAAG
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 4 0.11
24 24 0.69
25 7 0.20
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (24 bp):
ATAATCGGGAAGCTCATAAGAACC
Found at i:84412446 original size:14 final size:15
Alignment explanation
Indices: 84412420--84412448 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
84412410 CAGTTTTTGG
84412420 AATTATACGATTTAT
1 AATTATACGATTTAT
84412435 AATTAT-CGATTTAT
1 AATTATACGATTTAT
84412449 GGTTTTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (15 bp):
AATTATACGATTTAT
Found at i:84422807 original size:17 final size:16
Alignment explanation
Indices: 84422785--84422827 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
84422775 ACTATTAAGA
*
84422785 TAAATAATAAATTTAAT
1 TAAATAATAAATCT-AT
*
84422802 TAAATATTAAATCTAT
1 TAAATAATAAATCTAT
84422818 TAAAATAATA
1 T-AAATAATA
84422828 TTATTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 3 0.14
17 19 0.86
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAATAATAAATCTAT
Found at i:84429680 original size:21 final size:20
Alignment explanation
Indices: 84429646--84429686 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
84429636 GTTAAGATTT
84429646 ATTTTAATAAAATAT-TTAA
1 ATTTTAATAAAATATATTAA
84429665 ATTTTATATAAAAATATATTAA
1 ATTTTA-AT-AAAATATATTAA
84429687 TAACATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 2 0.11
21 7 0.37
22 4 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTTTAATAAAATATATTAA
Found at i:84430341 original size:21 final size:20
Alignment explanation
Indices: 84430317--84430355 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84430307 AAAGTTTTGA
*
84430317 ATTTGTATATGTCATTATAAC
1 ATTTGTAT-TGTAATTATAAC
*
84430338 ATTTTTATTGTAATTATA
1 ATTTGTATTGTAATTATA
84430356 TCTATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
ATTTGTATTGTAATTATAAC
Found at i:84430946 original size:49 final size:49
Alignment explanation
Indices: 84430837--84430938 Score: 136
Period size: 49 Copynumber: 2.1 Consensus size: 49
84430827 CTTGAACCTG
* * *
84430837 TGACCACATAACCACTGTCAACTAGGGGCTCGAGTTATACTTTAACTCA
1 TGACCACATAACCACCGTCAACTAGGGGCCCGAGTTATACTTAAACTCA
*
84430886 TGACCACATAACCACCGTCAACT-GGGGTCCCTAGTTATACTTCAAACT-A
1 TGACCACATAACCACCGTCAACTAGGGG-CCCGAGTTATACTT-AAACTCA
84430935 TGAC
1 TGAC
84430939 TATATAACTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
48 4 0.09
49 39 0.83
50 4 0.09
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TGACCACATAACCACCGTCAACTAGGGGCCCGAGTTATACTTAAACTCA
Found at i:84431569 original size:23 final size:22
Alignment explanation
Indices: 84431539--84431583 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
84431529 GCCACATTAT
* *
84431539 CTTAGTTTTTTCTTTAGTTTTTC
1 CTTAGTTTTCT-TTTAGGTTTTC
84431562 CTTAGTTTTCTTTTAGGTTTTC
1 CTTAGTTTTCTTTTAGGTTTTC
84431584 TAATCCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.09, C:0.13, G:0.11, T:0.67
Consensus pattern (22 bp):
CTTAGTTTTCTTTTAGGTTTTC
Found at i:84437194 original size:91 final size:91
Alignment explanation
Indices: 84437039--84437220 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
84437029 CCTCGTAACC
* *
84437039 TTAATCTGGAAATGGATACTGGTTAGGGGTGTTACAGATGCACAATTGATGGAATAATGCTAGAA
1 TTAATCCGGAAATGGATACTAGTTAGGGGTGTTACAGATGCACAATTGATGGAATAATGCTAGAA
84437104 AATAAGATGTTATTGACAGAGAACAA
66 AATAAGATGTTATTGACAGAGAACAA
84437130 TTAATCCGGAAATGGATACTAGTTAGGGGTGTTACAGATGCACAATTGATGGAATAATGCTAGAA
1 TTAATCCGGAAATGGATACTAGTTAGGGGTGTTACAGATGCACAATTGATGGAATAATGCTAGAA
84437195 AATAAGATGTTATTGACAGAGAACAA
66 AATAAGATGTTATTGACAGAGAACAA
84437221 GAGATTAAGA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (91 bp):
TTAATCCGGAAATGGATACTAGTTAGGGGTGTTACAGATGCACAATTGATGGAATAATGCTAGAA
AATAAGATGTTATTGACAGAGAACAA
Found at i:84438415 original size:26 final size:26
Alignment explanation
Indices: 84438356--84438451 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
84438346 TACCCTTTAG
* * *
84438356 GGGTATTTTGGTCATTTTACACTACAA
1 GGGTATTTCGGT-AATTTACCCTACAA
** *
84438383 GATTATTTCGGTAATTTACCCTATAA
1 GGGTATTTCGGTAATTTACCCTACAA
*
84438409 GGGTATTTCAGTAATTTACCCTACAA
1 GGGTATTTCGGTAATTTACCCTACAA
*
84438435 GGGTATTTTGGTAATTT
1 GGGTATTTCGGTAATTT
84438452 TACTATTTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
26 48 0.84
27 9 0.16
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.42
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTACCCTACAA
Found at i:84438442 original size:52 final size:53
Alignment explanation
Indices: 84438344--84438451 Score: 128
Period size: 52 Copynumber: 2.1 Consensus size: 53
84438334 AAACAGTCAC
* * ** * *
84438344 TTTACCCTTTAGGGGTATTTTGGTCATTTTACACTACAAGATTATTTCGGTAA
1 TTTACCCTATAAGGGTATTTCAGTCAATTTACACTACAAGAGTATTTCGGTAA
* * *
84438397 TTTACCCTATAAGGGTATTTCAGT-AATTTACCCTACAAGGGTATTTTGGTAA
1 TTTACCCTATAAGGGTATTTCAGTCAATTTACACTACAAGAGTATTTCGGTAA
84438449 TTT
1 TTT
84438452 TACTATTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
52 26 0.57
53 20 0.43
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.43
Consensus pattern (53 bp):
TTTACCCTATAAGGGTATTTCAGTCAATTTACACTACAAGAGTATTTCGGTAA
Found at i:84440813 original size:25 final size:26
Alignment explanation
Indices: 84440783--84440831 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
84440773 TGTCCATAAA
*
84440783 TTGAACCATCCATTACAA-ACAAAAT
1 TTGAACCATCCATTAAAATACAAAAT
84440808 TTGAACCATCCATTAAAATACAAA
1 TTGAACCATCCATTAAAATACAAA
84440832 CATCAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.24
Consensus pattern (26 bp):
TTGAACCATCCATTAAAATACAAAAT
Found at i:84441928 original size:34 final size:34
Alignment explanation
Indices: 84441855--84441929 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
84441845 ACCACATAAT
* * * *
84441855 ATACAT-ACATTAAACATGACATCCATAATATAC
1 ATACATAACAGTAAACATAACATACATAACATAC
* *
84441888 AAACATAACAGTAAACATAACATACATAACGTAC
1 ATACATAACAGTAAACATAACATACATAACATAC
84441922 ATACATAA
1 ATACATAA
84441930 TATGCATAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 5 0.15
34 29 0.85
ACGTcount: A:0.53, C:0.20, G:0.04, T:0.23
Consensus pattern (34 bp):
ATACATAACAGTAAACATAACATACATAACATAC
Found at i:84450560 original size:12 final size:12
Alignment explanation
Indices: 84450543--84450567 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84450533 TGATTACAGG
84450543 TAAATTTATATA
1 TAAATTTATATA
84450555 TAAATTTATATA
1 TAAATTTATATA
84450567 T
1 T
84450568 TCTAGTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAAATTTATATA
Found at i:84451130 original size:26 final size:26
Alignment explanation
Indices: 84451096--84451152 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
84451086 TTTCCTTGAA
*
84451096 CCTTGAGCGTTCAAGGTTTATGAAAT
1 CCTTTAGCGTTCAAGGTTTATGAAAT
84451122 CCTTTAGCGTTCAAGGTTTATGAAAT
1 CCTTTAGCGTTCAAGGTTTATGAAAT
84451148 CCTTT
1 CCTTT
84451153 CTCTTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39
Consensus pattern (26 bp):
CCTTTAGCGTTCAAGGTTTATGAAAT
Found at i:84457739 original size:262 final size:266
Alignment explanation
Indices: 84457245--84457746 Score: 739
Period size: 269 Copynumber: 1.9 Consensus size: 266
84457235 ATATATGTCC
* * * * *
84457245 CTTGGTGGTCTCTAGCTTTCGTTCAGCACTGCCTTTTAGCTGCTCTGACTCAACAACCCTATTGC
1 CTTGGTGGTCTATAGCTTCCGTTCAGCACTGCCTTTTAGCCGCTCTCACTCAACAACCATATTGC
*
84457310 GGAGCTCCTCATTCTGCCTTTGTATAACCAAAGGTCCAAACATTTCATCAATTCTCAGCAATGCT
66 GGAGCTCCTCATTCTGCCTGTGTATAACCAAAGGTCCAAACATTTCATCAATTCT-A-CAATGC-
*
84457375 TTCAAAAAACGACAAGGAACTATGTGGTCATTATTAAAGATAAAGGTATGAATTAAAAACAAACC
128 TTCAAAAAACGACAAGGAACCATGTGGTCATTATTAAAGATAAAGGTATGAATTAAAAACAAACC
84457440 TTCAGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATAATGCGTTCCTCAGCAATGGA
193 TTCAGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATAATGCGTTCCTCAGCAATGGA
84457505 AAGACGCTA
258 AAGACGCTA
*
84457514 CTTGGTGGTCTATAG-TTCCTGTTCCGCACTGCCTTTTAGCCGCTC-CACCTCAACAACCATATT
1 CTTGGTGGTCTATAGCTTCC-GTTCAGCACTGCCTTTTAGCCGCTCTCA-CTCAACAACCATATT
* **
84457577 GCGGAGCTCCTCATTCTGCCTGTGTATAACCAATGGTCCAGCCATTTCATCAATTCT-C-A-G-T
64 GCGGAGCTCCTCATTCTGCCTGTGTATAACCAAAGGTCCAAACATTTCATCAATTCTACAATGCT
* * *
84457638 TCAAAAAATGACAAGGAACCATGTGGTCGTTATTAAAGATAAAGGTATGAATTACAAAA-TAACC
129 TCAAAAAACGACAAGGAACCATGTGGTCATTATTAAAGATAAAGGTATGAATTA-AAAACAAACC
** * *
84457702 TTCAGATCTTGAGCAAGTTTCATTGCATTTTCATTGGCCTCCATA
193 TTCAGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATA
84457747 GTACGCTGCC
Statistics
Matches: 212, Mismatches: 18, Indels: 13
0.87 0.07 0.05
Matches are distributed among these distances:
262 97 0.46
263 4 0.02
264 1 0.00
265 1 0.00
266 1 0.00
268 4 0.02
269 104 0.49
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (266 bp):
CTTGGTGGTCTATAGCTTCCGTTCAGCACTGCCTTTTAGCCGCTCTCACTCAACAACCATATTGC
GGAGCTCCTCATTCTGCCTGTGTATAACCAAAGGTCCAAACATTTCATCAATTCTACAATGCTTC
AAAAAACGACAAGGAACCATGTGGTCATTATTAAAGATAAAGGTATGAATTAAAAACAAACCTTC
AGATCTACAACAAGTTTCATTGCATTTTCATTGGCCACCATAATGCGTTCCTCAGCAATGGAAAG
ACGCTA
Found at i:84460238 original size:58 final size:58
Alignment explanation
Indices: 84460159--84460288 Score: 181
Period size: 58 Copynumber: 2.2 Consensus size: 58
84460149 TTTTAATAAG
* * *
84460159 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATATAATTTAAT-AAAATAATAAACAATTTAATAATATTCTTAACATA
** *
84460217 ATTATTATTAAATATAATTTAATAAAATAATATGCAATTTAATAATATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
84460275 ATTATTATATAAAT
1 ATTATTAT-TAAAT
84460289 TAAAAAAATT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
57 22 0.34
58 37 0.58
59 5 0.08
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
Found at i:84460600 original size:13 final size:13
Alignment explanation
Indices: 84460584--84460609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84460574 AATACCTTTG
84460584 CATAATATCTATA
1 CATAATATCTATA
84460597 CATAATATCTATA
1 CATAATATCTATA
84460610 TGAGAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
CATAATATCTATA
Found at i:84462264 original size:35 final size:35
Alignment explanation
Indices: 84462218--84462290 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
84462208 TACAAAGATA
84462218 GTTAGCATTAACAAACAGAAAATATAAGGTAAAAT
1 GTTAGCATTAACAAACAGAAAATATAAGGTAAAAT
*
84462253 GTTAGCATTAACAAACAGATAATATAAGGTAAAAT
1 GTTAGCATTAACAAACAGAAAATATAAGGTAAAAT
84462288 GTT
1 GTT
84462291 TAACAATCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.15, T:0.26
Consensus pattern (35 bp):
GTTAGCATTAACAAACAGAAAATATAAGGTAAAAT
Found at i:84467518 original size:30 final size:32
Alignment explanation
Indices: 84467482--84467541 Score: 81
Period size: 30 Copynumber: 1.9 Consensus size: 32
84467472 ATCAATTTTA
84467482 AAAAATT-ATAAAAATAAAT-ATAAA-TATATC
1 AAAAATTCA-AAAAATAAATAATAAAGTATATC
*
84467512 AAAAATTCAAAAAATATATAATAAAGTATA
1 AAAAATTCAAAAAATAAATAATAAAGTATA
84467542 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 16 0.62
31 6 0.23
32 4 0.15
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (32 bp):
AAAAATTCAAAAAATAAATAATAAAGTATATC
Found at i:84469228 original size:24 final size:24
Alignment explanation
Indices: 84469192--84469250 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
84469182 TTTTAATATT
*
84469192 ATCATAAAAATATAA-ATTAATAAAA
1 ATCAT-AATATATAATATT-ATAAAA
84469217 ATCATAATATATAATATTATAAAA
1 ATCATAATATATAATATTATAAAA
*
84469241 ATAAT-ATATA
1 ATCATAATATA
84469251 ACCCACTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 5 0.16
24 18 0.58
25 8 0.26
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (24 bp):
ATCATAATATATAATATTATAAAA
Found at i:84470135 original size:18 final size:18
Alignment explanation
Indices: 84470114--84470183 Score: 65
Period size: 18 Copynumber: 4.0 Consensus size: 18
84470104 ACTCGAATTT
84470114 TTTTTG-AAACCCGAGAGA
1 TTTTTGAAAACCCGAGA-A
* * *
84470132 -TTTTGAAAACACAAAAA
1 TTTTTGAAAACCCGAGAA
*
84470149 TTTTTGAAAACCTGAGAA
1 TTTTTGAAAACCCGAGAA
*
84470167 TCTTTG-AAACCCGAGAA
1 TTTTTGAAAACCCGAGAA
84470184 ATTAAAAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 16 0.39
18 25 0.61
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (18 bp):
TTTTTGAAAACCCGAGAA
Found at i:84470177 original size:53 final size:52
Alignment explanation
Indices: 84470066--84470209 Score: 152
Period size: 52 Copynumber: 2.8 Consensus size: 52
84470056 CATGATCTGA
* * *
84470066 TTGAAACACGAGAATTTTGAAAAAACAAAAA-TTTTG-AAACTCGAATTTTTT
1 TTGAAACCCGAGAATTTTGAAAAAACAAAAATTTTTGAAAACTCGAA-TATCT
*
84470117 TTGAAACCCGAGAGATTTTGAAAACACAAAAATTTTTGAAAAC-CTGAGA-ATCT
1 TTGAAACCCGAGA-ATTTTGAAAAAACAAAAATTTTTGAAAACTC-GA-ATATCT
* ** *
84470170 TTGAAACCCGAGAAATTAAAAAAAACGAAAATTTTTGAAA
1 TTGAAACCCGAGAATTTTGAAAAAACAAAAATTTTTGAAA
84470210 CCCGAATTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
51 12 0.15
52 39 0.49
53 21 0.27
54 6 0.08
55 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (52 bp):
TTGAAACCCGAGAATTTTGAAAAAACAAAAATTTTTGAAAACTCGAATATCT
Found at i:84471720 original size:29 final size:30
Alignment explanation
Indices: 84471682--84471768 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
84471672 TGTAATTTTT
*
84471682 AGAAAA-TTTA-GGGTCAAAATGCAATTTA
1 AGAAAAGTTTAGGGGTCAAAATACAATTTA
* *
84471710 ATAAAAGTTTAGGGGTCAAAATATAATTTA
1 AGAAAAGTTTAGGGGTCAAAATACAATTTA
* *
84471740 AGAAAAGTTTATGGGTCAAAATATAATTT
1 AGAAAAGTTTAGGGGTCAAAATACAATTT
84471769 TTTATTTTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
28 5 0.10
29 4 0.08
30 43 0.83
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (30 bp):
AGAAAAGTTTAGGGGTCAAAATACAATTTA
Found at i:84472238 original size:78 final size:77
Alignment explanation
Indices: 84471956--84472452 Score: 487
Period size: 77 Copynumber: 6.3 Consensus size: 77
84471946 TTATTCTTTA
* * * * * * * * * *
84471956 TTGAAAAACAAAAAATTGAAAATAGCTCGGGATGCGACCCGAAGTTCAACTCACCTCTTGGATTA
1 TTGAAAAAC-AGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
* *
84472021 TGAATTGA--TCT
65 TGAGTTGATTTTT
* *
84472032 TTGAAAAAGCAGAAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAAT
1 TTGAAAAA-CAG-AAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
84472097 ATGAGTTGATTTTTTT
64 ATGAGTTGA--TTTTT
* * * * *
84472113 TTGAAAAAAAGAAATTGAAAATACCTCTGCGTGTGACCCGAGCCTCAACTCACCTCTCGTAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
84472178 GAGTTGATTTTT
66 GAGTTGATTTTT
* * *
84472190 TTGAAAGACATAAATTGAAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCGCAAC
1 TTGAAAAACAGAAATTG-AAAATACCTCAG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
84472254 ATGAGTTGATTTTT
64 ATGAGTTGATTTTT
** *
84472268 TTGAAAAACAGAAATTGAAAATACCTCAGTGTGTGACCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
84472333 GAGTTAATCTTTTT
66 GAGTTGA--TTTTT
* * * * * * *
84472347 TCACATAAATTGAAAATAGAAAATGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCT
1 T----T-GA---AAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCT
*
84472412 TGCAATATGAGTTGATTTTT
58 CGCAATATGAGTTGATTTTT
** *
84472432 TTGAAAAGTAGAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
84472453 ACAAAAATTG
Statistics
Matches: 353, Mismatches: 49, Indels: 37
0.80 0.11 0.08
Matches are distributed among these distances:
76 9 0.03
77 132 0.37
78 70 0.20
79 61 0.17
80 3 0.01
81 11 0.03
83 1 0.00
84 1 0.00
85 6 0.02
87 59 0.17
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (77 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:84472332 original size:155 final size:156
Alignment explanation
Indices: 84472045--84472452 Score: 482
Period size: 155 Copynumber: 2.6 Consensus size: 156
84472035 AAAAAGCAGA
* * *
84472045 AAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGA-TTT
* * *
84472110 TTTTTGAAAAAAAGAAATTGAAAATACCTCTGCGTGTGACCCGAGCCTCAACTCACCTCTCGTAA
65 TTTTTGAAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCCAAGCCTCAACTCACCTCTCGCAA
*
84472175 TATGAGTTGAT-TTTTTTGAAAGACAT
130 TATGAGTTAATCTTTTTTGAAAGACAT
84472201 AAATTGAAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGA-T
1 AAATTG-AAAATACCTCAG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATT
* * *
84472264 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGTGACCCAAGGCTCAACTCACCTCTCGCA
64 TTTTTTGAAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCCAAGCCTCAACTCACCTCTCGCA
* *
84472329 ATATGAGTTAATCTTTTTTCACATAAATTGAAAAT
129 ATATGAGTTAATCTTTTTT----GAAA--G-ACAT
* * * * * * *
84472364 AGAAAATGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCTTGCAATATGAGTTGA-T
1 --AAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATT
** *
84472428 TTTTTTGAAAAGTAGAAATTAAAAA
64 TTTTTTGAAAAAAAGAAATTGAAAA
84472453 ACAAAAATTG
Statistics
Matches: 217, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
155 71 0.33
156 13 0.06
157 50 0.23
160 3 0.01
162 1 0.00
163 3 0.01
164 70 0.32
165 6 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (156 bp):
AAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTT
TTTTGAAAAAAAGAAATTGAAAATACCTCAGCGTGTGACCCAAGCCTCAACTCACCTCTCGCAAT
ATGAGTTAATCTTTTTTGAAAGACAT
Found at i:84472423 original size:87 final size:86
Alignment explanation
Indices: 84472272--84472522 Score: 263
Period size: 87 Copynumber: 2.8 Consensus size: 86
84472262 ATTTTTTTGA
* *
84472272 AAAACAGAAATTGAAAATACCTCAGTGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAAATGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
84472337 TAATCTTTTTTCACATAAATTG
66 TAAT-TTTTTTCACATAAATTG
* * ** * *
84472359 AAAATAGAAAATGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCTTGCAATATGAGT
1 AAAACAGAAAATGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
84472424 TGATTTTTTTGAAAAGTAGAAATTAA
66 TAATTTTTTT-CACA-T--AAATT-G
* * * *
84472450 AAAACA-AAAATTGAAAATACCTCGGCATGTGGCTCGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAAA-TGAAAATACCTCAGCGTGTGAC-CCAAGGCTCAACTCACCTCTCGCAATATGA
*
84472513 GTTGATTTTT
64 GTTAATTTTT
84472523 GAAAAACAGA
Statistics
Matches: 137, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
86 6 0.04
87 62 0.45
88 1 0.01
90 9 0.07
91 57 0.42
92 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (86 bp):
AAAACAGAAAATGAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTTTCACATAAATTG
Found at i:84472498 original size:91 final size:87
Alignment explanation
Indices: 84472271--84472522 Score: 285
Period size: 91 Copynumber: 2.8 Consensus size: 87
84472261 GATTTTTTTG
* * *
84472271 AAAAACAGAAATTGAAAATACCTCAGTGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCGAA-GCTCAACTCACCTCTCGCAATATGAG
* * *
84472336 TTAATCTTTTTTCACATAAATTGA
65 TTGAT-TTTTTTAAAATAAATTGA
* * * * *
84472360 AAATA-GAAAA-TGAAAATATCTCAGCGTGTGACCTGATGCTCAACTCACCTCTTGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACC-GAAGCTCAACTCACCTCTCGCAATATGAG
84472423 TTGATTTTTTTGAAAAGTAGAAATT-A
65 TTGATTTTTTT-AAAA-T--AAATTGA
* * *
84472449 AAAAACAAAAATTGAAAATACCTCGGCATGTGGCTCGAAGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGAC-CGAAGCTCAACTCACCTCTCGCAATATGAG
84472514 TTGATTTTT
65 TTGATTTTT
84472523 GAAAAACAGA
Statistics
Matches: 136, Mismatches: 19, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
86 6 0.04
87 52 0.38
88 5 0.04
89 9 0.07
90 9 0.07
91 54 0.40
92 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (87 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCGAAGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTAAAATAAATTGA
Found at i:84486496 original size:18 final size:18
Alignment explanation
Indices: 84486348--84486506 Score: 77
Period size: 18 Copynumber: 9.1 Consensus size: 18
84486338 GATCCGATTG
84486348 AAACACGAAAA-TTTTGA
1 AAACACGAAAATTTTTGA
84486365 AAACACGAAAA-TTTTG-
1 AAACACGAAAATTTTTGA
** ***
84486381 AAACTTGATTTTTTTTTG-
1 AAACACGA-AAATTTTTGA
* *
84486399 AAACCCG-AGATATTTTGA
1 AAACACGAAAAT-TTTTGA
84486417 AAACAC-AAAATTTTTTGA
1 AAACACGAAAA-TTTTTGA
* *
84486435 AAAC-CTGAGAATCTTTG-
1 AAACAC-GAAAATTTTTGA
* **
84486452 AAACCCGAGAAA--TTAAA
1 AAACACGA-AAATTTTTGA
* *
84486469 AAAAATGAAAATTTTTGA
1 AAACACGAAAATTTTTGA
84486487 AAACACGAAAATTTTTGA
1 AAACACGAAAATTTTTGA
84486505 AA
1 AA
84486507 CCCGAATTTT
Statistics
Matches: 105, Mismatches: 24, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
16 12 0.11
17 33 0.31
18 56 0.53
19 4 0.04
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (18 bp):
AAACACGAAAATTTTTGA
Found at i:84486501 original size:17 final size:17
Alignment explanation
Indices: 84486348--84486383 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
84486338 GATCCGATTG
84486348 AAACACGAAAATTTTGA
1 AAACACGAAAATTTTGA
84486365 AAACACGAAAATTTTGA
1 AAACACGAAAATTTTGA
84486382 AA
1 AA
84486384 CTTGATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (17 bp):
AAACACGAAAATTTTGA
Found at i:84488131 original size:30 final size:29
Alignment explanation
Indices: 84487988--84488136 Score: 100
Period size: 30 Copynumber: 5.3 Consensus size: 29
84487978 GGGGCTAAAG
*
84487988 TGTAATTTTTAGAAAA-TTTAGGGTCAAAA
1 TGTAA-TTTAAGAAAAGTTTAGGGTCAAAA
* * * ** *
84488017 TGCAATTTAAAAAAATTTTTAGGGTTGAAG
1 TGTAATTTAAGAAAA-GTTTAGGGTCAAAA
*
84488047 TGAAATTTAA-AGAAAGTTTAGGGGT--AAA
1 TGTAATTTAAGA-AAAGTTTA-GGGTCAAAA
* *
84488075 --T-A--TAGGAAAAGTTTAGGGTTAAAA
1 TGTAATTTAAGAAAAGTTTAGGGTCAAAA
84488099 TGTAATTTAAGAAAAGTTTAGGGGTCAAAA
1 TGTAATTTAAGAAAAGTTTA-GGGTCAAAA
84488129 TGTAATTT
1 TGTAATTT
84488137 TTTATTTTTT
Statistics
Matches: 94, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
22 4 0.04
23 10 0.11
24 4 0.04
25 1 0.01
26 1 0.01
27 1 0.01
28 10 0.11
29 21 0.22
30 42 0.45
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.34
Consensus pattern (29 bp):
TGTAATTTAAGAAAAGTTTAGGGTCAAAA
Found at i:84490277 original size:43 final size:43
Alignment explanation
Indices: 84490219--84490344 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
84490209 ATCATATGTC
* * * *
84490219 GATGCCATTGTCCCAGACAAGGTCTTACAGGAAATCA-ATTAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAAT-AT
*
84490262 GATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAT
* * * *
84490305 GATGCCAATGTCTCAGGCATGGTCTTACATGTAATCACAA
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAA
84490345 CTCGATAACC
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 72 0.97
44 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAT
Found at i:84493398 original size:16 final size:16
Alignment explanation
Indices: 84493377--84493407 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
84493367 TTTTTTAACT
84493377 TTTTTTCTTCTTTTTA
1 TTTTTTCTTCTTTTTA
84493393 TTTTTTCTTCTTTTT
1 TTTTTTCTTCTTTTT
84493408 TTTCGAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTCTTCTTTTTA
Found at i:84493409 original size:19 final size:19
Alignment explanation
Indices: 84493365--84493410 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
84493355 TCATCAAACT
84493365 TTTTTTTTAACTTTTTTTC
1 TTTTTTTTAACTTTTTTTC
* *
84493384 TTCTTTTT-ATTTTTTCTTC
1 TTTTTTTTAACTTTTT-TTC
84493403 TTTTTTTT
1 TTTTTTTT
84493411 CGAATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTTTTAACTTTTTTTC
Found at i:84500969 original size:317 final size:317
Alignment explanation
Indices: 84500394--84501027 Score: 1268
Period size: 317 Copynumber: 2.0 Consensus size: 317
84500384 ATTCAATTCT
84500394 CACGTGAGGAATTGATTCGTACTAGCTCTTGGCTTGAGAAAAATTAGCCAAGCATGATATTGATT
1 CACGTGAGGAATTGATTCGTACTAGCTCTTGGCTTGAGAAAAATTAGCCAAGCATGATATTGATT
84500459 ATCATGCTTAACATGTTTTGATAATGTAAAAACATAAAATAAAATAAAATAAAGTAGAAATAAAA
66 ATCATGCTTAACATGTTTTGATAATGTAAAAACATAAAATAAAATAAAATAAAGTAGAAATAAAA
84500524 CAAAAGAAGAAAATTTTATTAAAAATGAAAATAAAGTAGCAATAAGAACAAAAGACCAGGGATCC
131 CAAAAGAAGAAAATTTTATTAAAAATGAAAATAAAGTAGCAATAAGAACAAAAGACCAGGGATCC
84500589 CCTTAGCATTACCCAAAGGTGGGTATTTATAGGCTTCAAATTCCCAAATCAACAAGGAAAACTAA
196 CCTTAGCATTACCCAAAGGTGGGTATTTATAGGCTTCAAATTCCCAAATCAACAAGGAAAACTAA
84500654 TCAAAAAAAGGTAAGATAATATCTTTAAAATTATGAAAATGAAATCCAAAATCCCCA
261 TCAAAAAAAGGTAAGATAATATCTTTAAAATTATGAAAATGAAATCCAAAATCCCCA
84500711 CACGTGAGGAATTGATTCGTACTAGCTCTTGGCTTGAGAAAAATTAGCCAAGCATGATATTGATT
1 CACGTGAGGAATTGATTCGTACTAGCTCTTGGCTTGAGAAAAATTAGCCAAGCATGATATTGATT
84500776 ATCATGCTTAACATGTTTTGATAATGTAAAAACATAAAATAAAATAAAATAAAGTAGAAATAAAA
66 ATCATGCTTAACATGTTTTGATAATGTAAAAACATAAAATAAAATAAAATAAAGTAGAAATAAAA
84500841 CAAAAGAAGAAAATTTTATTAAAAATGAAAATAAAGTAGCAATAAGAACAAAAGACCAGGGATCC
131 CAAAAGAAGAAAATTTTATTAAAAATGAAAATAAAGTAGCAATAAGAACAAAAGACCAGGGATCC
84500906 CCTTAGCATTACCCAAAGGTGGGTATTTATAGGCTTCAAATTCCCAAATCAACAAGGAAAACTAA
196 CCTTAGCATTACCCAAAGGTGGGTATTTATAGGCTTCAAATTCCCAAATCAACAAGGAAAACTAA
84500971 TCAAAAAAAGGTAAGATAATATCTTTAAAATTATGAAAATGAAATCCAAAATCCCCA
261 TCAAAAAAAGGTAAGATAATATCTTTAAAATTATGAAAATGAAATCCAAAATCCCCA
84501028 AAATCACGTC
Statistics
Matches: 317, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
317 317 1.00
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.25
Consensus pattern (317 bp):
CACGTGAGGAATTGATTCGTACTAGCTCTTGGCTTGAGAAAAATTAGCCAAGCATGATATTGATT
ATCATGCTTAACATGTTTTGATAATGTAAAAACATAAAATAAAATAAAATAAAGTAGAAATAAAA
CAAAAGAAGAAAATTTTATTAAAAATGAAAATAAAGTAGCAATAAGAACAAAAGACCAGGGATCC
CCTTAGCATTACCCAAAGGTGGGTATTTATAGGCTTCAAATTCCCAAATCAACAAGGAAAACTAA
TCAAAAAAAGGTAAGATAATATCTTTAAAATTATGAAAATGAAATCCAAAATCCCCA
Found at i:84502850 original size:19 final size:19
Alignment explanation
Indices: 84502828--84502887 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
84502818 TATCGTTAAA
84502828 AAATTATAAAAATTATATT
1 AAATTATAAAAATTATATT
* *
84502847 AAATTTTAACAAA-TAAATAT
1 AAATTATAA-AAATTATAT-T
* *
84502867 AAAATACTAAAATTTATATT
1 AAATTA-TAAAAATTATATT
84502887 A
1 A
84502888 CGACATTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 12 0.39
20 12 0.39
21 7 0.23
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTATAAAAATTATATT
Found at i:84503557 original size:72 final size:72
Alignment explanation
Indices: 84503440--84503586 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
84503430 ACTAACAAAT
84503440 CATACCAAAACTGTCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
1 CATACCAAAACTGTCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
84503505 TATTAAC
66 TATTAAC
84503512 CATACCAAAACTGTCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
1 CATACCAAAACTGTCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
84503577 TATTAAC
66 TATTAAC
84503584 CAT
1 CAT
84503587 TCTAAACACA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.24
Consensus pattern (72 bp):
CATACCAAAACTGTCCACGGTCATTCCAAACAATAACCAGAGCTCATAAAGTATGTAATACCTCA
TATTAAC
Found at i:84503585 original size:35 final size:35
Alignment explanation
Indices: 84503473--84503585 Score: 88
Period size: 35 Copynumber: 3.2 Consensus size: 35
84503463 TTCCAAACAA
84503473 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
1 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
* * * * ** * *
84503508 TAACCATA-C-CA-AAACTGTCCACGGTCATTCCAAACAA
1 TAACCAGAGCTCATAAA--GT--A-TGTAATACCTCATAT
84503545 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
1 TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
84503580 TAACCA
1 TAACCA
84503586 TTCTAAACAC
Statistics
Matches: 54, Mismatches: 16, Indels: 16
0.63 0.19 0.19
Matches are distributed among these distances:
32 3 0.06
33 2 0.04
34 3 0.06
35 21 0.39
36 2 0.04
37 15 0.28
38 3 0.06
39 2 0.04
40 3 0.06
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.25
Consensus pattern (35 bp):
TAACCAGAGCTCATAAAGTATGTAATACCTCATAT
Found at i:84506536 original size:56 final size:57
Alignment explanation
Indices: 84506427--84506541 Score: 144
Period size: 56 Copynumber: 2.0 Consensus size: 57
84506417 ATATAACTTC
* * * *
84506427 ATTTAATAAATTTTTTTAGTGAAATCAAAATTCTTATTTATAAGTATGATAAAT-TT
1 ATTTAATAAAATATTTTAGTAAAATCAAAATTCTTATTTATAAATATGATAAATCTT
* * *
84506483 ATTTAATAAAATATTTTAGTAAAATTAAAATTCTTATTTTTAAAT-TTAGTAAATCTT
1 ATTTAATAAAATATTTTAGTAAAATCAAAATTCTTATTTATAAATATGA-TAAATCTT
84506540 AT
1 AT
84506542 AAATAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 2 0.04
56 44 0.88
57 4 0.08
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (57 bp):
ATTTAATAAAATATTTTAGTAAAATCAAAATTCTTATTTATAAATATGATAAATCTT
Found at i:84507739 original size:16 final size:16
Alignment explanation
Indices: 84507706--84507739 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84507696 AGTGTGTGTT
* *
84507706 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
84507722 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
84507738 AA
1 AA
84507740 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:84510565 original size:21 final size:21
Alignment explanation
Indices: 84510539--84510579 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84510529 AGACGAGCAA
* *
84510539 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
84510560 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
84510580 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:84512518 original size:16 final size:16
Alignment explanation
Indices: 84512485--84512518 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84512475 GGAGATTGTT
* *
84512485 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
84512501 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
84512517 AA
1 AA
84512519 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:84523265 original size:43 final size:43
Alignment explanation
Indices: 84523105--84523263 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 43
84523095 TATGTGTTAT
* * * *
84523105 CATGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGATGTTGGCATCGA-TAT-TCAATTA
* * * ** *
84523149 CGTGTAAGACCACATTTGGGATGTTGGCATCG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTCAATTA
* * * * *
84523191 CGTGTAAGACC-CTGTCTAGGACAG-AGGCATTGATATTCAATTA
1 CATGTAAGACCAC-GTCTGGGA-TGTTGGCATCGATATTCAATTA
84523234 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CATGTAAGACCACGTCTGGGATGTTGGCAT
84523264 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.31
43 31 0.36
44 28 0.32
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTCAATTA
Found at i:84526520 original size:40 final size:39
Alignment explanation
Indices: 84526422--84526684 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
84526412 TCCTCGTTCA
* * * *
84526422 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
84526461 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
84526500 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
84526540 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
84526580 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
84526620 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
84526661 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84526685 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:84526644 original size:120 final size:119
Alignment explanation
Indices: 84526422--84526684 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
84526412 TCCTCGTTCA
* * *
84526422 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
84526487 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
84526540 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
84526605 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
84526661 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
84526685 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:84526693 original size:41 final size:41
Alignment explanation
Indices: 84526616--84526693 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
84526606 TTTGTATCTC
* * *
84526616 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
84526657 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
84526694 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:84534470 original size:40 final size:40
Alignment explanation
Indices: 84534372--84534674 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
84534362 TCCTCGTTCA
* * * * *
84534372 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
84534411 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
84534451 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
84534491 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
84534531 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
84534571 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
84534611 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
84534651 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84534675 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.17
40 184 0.78
41 12 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:84534683 original size:41 final size:41
Alignment explanation
Indices: 84534606--84534683 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
84534596 TTTGTATCTC
* * *
84534606 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
84534647 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
84534684 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:84537388 original size:33 final size:33
Alignment explanation
Indices: 84537351--84537438 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
84537341 ACTCATAGTG
*
84537351 CCATAACCTAGTTATGGTCTTATCATCAGATTT
1 CCATAACCCAGTTATGGTCTTATCATCAGATTT
* * *
84537384 CCATAGCCCAGCTATGGTCTTATGATCAGATTT
1 CCATAACCCAGTTATGGTCTTATCATCAGATTT
84537417 CCAT-ACCCAGTTATGGTCTTAT
1 CCATAACCCAGTTATGGTCTTAT
84537439 ATTTAATCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
32 16 0.33
33 33 0.67
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (33 bp):
CCATAACCCAGTTATGGTCTTATCATCAGATTT
Found at i:84537929 original size:43 final size:43
Alignment explanation
Indices: 84537881--84537963 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
84537871 AGTTATTCAT
84537881 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
1 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
*
84537924 TAGCACATATTTCAATTCTAATTCACTTCACAATTTATAC
1 TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATAC
84537964 CCCTCAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.40
Consensus pattern (43 bp):
TAGCACATATTTCAATTCTAATTCACTTCAAAATTTATACGTC
Found at i:84538879 original size:7 final size:7
Alignment explanation
Indices: 84538867--84538892 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
84538857 CATTTAACTT
84538867 ATAAATA
1 ATAAATA
84538874 ATAAATA
1 ATAAATA
84538881 ATAAATA
1 ATAAATA
84538888 ATAAA
1 ATAAA
84538893 ATTTTTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
ATAAATA
Found at i:84542757 original size:16 final size:16
Alignment explanation
Indices: 84542738--84542768 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84542728 CTTCTTCACT
84542738 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
84542754 TACTTACTTACTTAA
1 TACTCACTTACTTAA
84542769 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:84542774 original size:20 final size:20
Alignment explanation
Indices: 84542735--84542774 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84542725 AAACTTCTTC
* *
84542735 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
84542755 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
84542775 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:84543150 original size:55 final size:53
Alignment explanation
Indices: 84542960--84543214 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
84542950 ACACGGGTAC
* * * * *
84542960 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
84543009 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
84543062 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
84543117 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
84543170 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
84543215 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:84543151 original size:108 final size:110
Alignment explanation
Indices: 84543007--84543207 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
84542997 ATCCTTTTGA
* *
84543007 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
84543070 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
84543115 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
84543180 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
84543208 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:84556863 original size:18 final size:18
Alignment explanation
Indices: 84556836--84556877 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
84556826 ACTTTCATTC
* *
84556836 ATATACATGTATATATAT
1 ATATATATGTAAATATAT
*
84556854 CTATATATGTAAATATAT
1 ATATATATGTAAATATAT
84556872 ATATAT
1 ATATAT
84556878 CTATTTATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (18 bp):
ATATATATGTAAATATAT
Found at i:84560645 original size:79 final size:81
Alignment explanation
Indices: 84560543--84560727 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
84560533 GCTCCTCGTT
* *
84560543 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
84560605 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
84560623 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
84560687 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
84560703 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84560728 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:84560727 original size:40 final size:40
Alignment explanation
Indices: 84560543--84560727 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
84560533 GCTCCTCGTT
* * *
84560543 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
84560583 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
84560623 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
84560662 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
84560703 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84560728 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 76 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:84568537 original size:79 final size:78
Alignment explanation
Indices: 84568435--84568657 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
84568425 GCTCCTCGTT
* *
84568435 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
84568500 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
84568515 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
84568579 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
84568593 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
84568656 GA
63 GA
84568658 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:84568552 original size:39 final size:40
Alignment explanation
Indices: 84568435--84568657 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
84568425 GCTCCTCGTT
* *
84568435 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
84568475 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
84568515 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
84568554 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
84568593 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
84568634 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84568658 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:84580942 original size:133 final size:133
Alignment explanation
Indices: 84580698--84580995 Score: 429
Period size: 133 Copynumber: 2.2 Consensus size: 133
84580688 CTGATTCTAC
* * * *
84580698 AGATCTTGTC-CCTCTGAAGTTGCAGCGGAGCAGATCGAAGACGGTGAATCTAGTCTTCCTGAAG
1 AGATCTTGTCTCCT-TGAAGTTGCAGTGGAGCAGATCAAAAACGGTGAATCTAGGCTTCCTGAAG
* * * *
84580762 TCGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
65 TCACAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGA
84580827 TTGT
130 TTGT
* * * *
84580831 AGATCTTGCCTCCTTGAAGTTGCAGTGGAGC-GAATCAAAAATGGTGAGTCTTGGCTTCCTGAAG
1 AGATCTTGTCTCCTTGAAGTTGCAGTGGAGCAG-ATCAAAAACGGTGAATCTAGGCTTCCTGAAG
* *
84580895 TTACAGTGAAGCAGATTTAAGCCACCACCCTATCTCCTTAAAATTGTAGTGGAGTAGGCCGAAGA
65 TCACAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGA
84580960 TTGT
130 TTGT
*
84580964 AGATCTTGTCTCCATGAAGTTGCAGTGGAGCA
1 AGATCTTGTCTCCTTGAAGTTGCAGTGGAGCA
84580996 TATCGAAGTC
Statistics
Matches: 146, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
132 1 0.01
133 142 0.97
134 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (133 bp):
AGATCTTGTCTCCTTGAAGTTGCAGTGGAGCAGATCAAAAACGGTGAATCTAGGCTTCCTGAAGT
CACAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAATTGTAGTGGAGTAGGCCGAAGAT
TGT
Found at i:84581060 original size:133 final size:133
Alignment explanation
Indices: 84580747--84581066 Score: 308
Period size: 133 Copynumber: 2.4 Consensus size: 133
84580737 GACGGTGAAT
* ** * * * *
84580747 CTAGTCTTCCTGAAGTCGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGT
1 CTAG-CTTCCTAAAGTTACAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGT
* * ***
84580812 GGAGTAGGCTGAAGATTGTAGATCTTGCCTCCTTGAAGTTGCAGTGGAGCGAATCAAAAATGGTG
65 GGAGTAGGCCGAAGATTGTAGATCTTGCCTCCATGAAGTTGCAGTGGAGCGAATCAAAAATGCAC
*
84580877 AGTC
130 AATC
* * * * * * * *
84580881 TTGGCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCACCCTATCTCCTTAAAATTGTAGTG
1 CTAGCTTCCTAAAGTTACAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTG
* * *
84580946 GAGTAGGCCGAAGATTGTAGATCTTGTCTCCATGAAGTTGCAGTGGAGC-ATATC-GAAGT-CAC
66 GAGTAGGCCGAAGATTGTAGATCTTGCCTCCATGAAGTTGCAGTGGAGCGA-ATCAAAAATGCAC
84581008 AATCC
130 AAT-C
* * *
84581013 CTATC-TCTCTAAAGTTACAGTTG-AGCAGATTGGAGCAACAATTCCTATATCCCT
1 CTAGCTTC-CTAAAGTTACAG-TGAAGCAGATTGAAGCAACAA-TCCTATCTCCCT
84581067 GAAGATGCAG
Statistics
Matches: 154, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
131 4 0.03
132 32 0.21
133 116 0.75
134 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (133 bp):
CTAGCTTCCTAAAGTTACAGTGAAGCAGATTGAAGCAACAATCCTATCTCCCTAAAATTGTAGTG
GAGTAGGCCGAAGATTGTAGATCTTGCCTCCATGAAGTTGCAGTGGAGCGAATCAAAAATGCACA
ATC
Found at i:84583154 original size:23 final size:25
Alignment explanation
Indices: 84583105--84583154 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
84583095 TAATTTAAAA
* *
84583105 ATTATTATTTTTGAATGTTTCTTTAT
1 ATTATTACTTTTG-ATGTTTCTATAT
84583131 ATTATTACTTTTG-TGTTT-TATAT
1 ATTATTACTTTTGATGTTTCTATAT
84583154 A
1 A
84583155 GTATCTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 5 0.23
24 5 0.23
26 12 0.55
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (25 bp):
ATTATTACTTTTGATGTTTCTATAT
Found at i:84584043 original size:131 final size:130
Alignment explanation
Indices: 84583864--84584330 Score: 462
Period size: 131 Copynumber: 3.6 Consensus size: 130
84583854 TTACTCATTT
* * *
84583864 AAAATTTCTTTAAAATGAAGGCAATGCTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGC
1 AAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTAGGGAATCGTGCCCTATCGTGC
* **
84583929 TGGATTGCGATTTCTCGTTTGTTCAAAAAAATCGAATATTCCTTTGGGATTACACTCATATTTTT
66 TGGATTGCGATTTCTCGTTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCAT-GCTTT
84583994 A
130 A
* * * * *
84583995 AAAAATTCTTTAAAACGAATGCAATACTCGGTGTTTGGAAATTTGGGAATCGTGCCCTATCGTGC
1 AAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTAGGGAATCGTGCCCTATCGTGC
* * *
84584060 TGGATTGCGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTGGGTTTTTACTCATGCTTTA
66 TGGATTGCGATTTCTCGTTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATGCTTTA
* ** * * * ** *
84584125 AAAAACTCTCCAAAACGTAGGTAATGTTCGATGTTTGGCAATTCAGGGAATTATGCCCTATTGTG
1 AAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATT-AGGGAATCGTGCCCTATCGTG
* * * * * * * *
84584190 CTGGGTTGCAATCTC-CTATTTGTTCAAAATAATTGAATATTCCTTTAGAATTTCACTCATG-TT
65 CTGGATTGCGATTTCTC-GTTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATGCTT
84584253 CT-
129 -TA
* * * * * * * *
84584255 CAAAATTC--TAAAA-TAAGGCAATG-TCCGATGTCTAGAAATTCAAGGAGTCGTGCCCTATTGT
1 AAAAATTCTTTAAAACGAAGGCAATGCT-CGATGTTTGGCAATT-AGGGAATCGTGCCCTATCGT
* *
84584316 GCTGGGTTTCGATTT
64 GCTGGATTGCGATTT
84584331 TCTTGTTGGA
Statistics
Matches: 279, Mismatches: 53, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
126 1 0.00
127 48 0.17
128 4 0.01
130 46 0.16
131 180 0.65
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (130 bp):
AAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTAGGGAATCGTGCCCTATCGTGC
TGGATTGCGATTTCTCGTTTGTTCAAAAAAATCGAATATTCCTTTGGGATTTCACTCATGCTTTA
Found at i:84595839 original size:19 final size:20
Alignment explanation
Indices: 84595815--84595857 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
84595805 ACCCGAATCA
*
84595815 ATCAAAGCAATAACTCTAG-
1 ATCAAACCAATAACTCTAGT
84595834 ATCAAACCAATAACTCTAGT
1 ATCAAACCAATAACTCTAGT
84595854 ATCA
1 ATCA
84595858 TGGAGAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.47, C:0.23, G:0.07, T:0.23
Consensus pattern (20 bp):
ATCAAACCAATAACTCTAGT
Found at i:84598937 original size:55 final size:53
Alignment explanation
Indices: 84598816--84599002 Score: 175
Period size: 55 Copynumber: 3.5 Consensus size: 53
84598806 TGCCATGTCC
84598816 GACATGGTCTTACATG-GTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
1 GACATGGTCTTACATGAG-ATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
* * * * *
84598869 GGCATGGTCTTACATGAGA-CCTTTGCCTTATAGAAACTTATCAATTCCATGGCTT
1 GACATGGTCTTACATGAGATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTT
* * * *
84598924 GACATGGCCTTACATGATATCCTTGCCTTA-GAAACCTTACCAATTGCTATGCCTT
1 GACATGGTCTTACATGAGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTT
* *
84598979 GGCATTGTCTTACATG-GTATCCTT
1 GACATGGTCTTACATGAG-ATCCTT
84599003 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
52 2 0.02
53 29 0.26
54 9 0.08
55 68 0.62
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (53 bp):
GACATGGTCTTACATGAGATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
Found at i:84600438 original size:48 final size:48
Alignment explanation
Indices: 84600386--84600518 Score: 142
Period size: 48 Copynumber: 2.8 Consensus size: 48
84600376 CTCGTACACT
* ** **
84600386 AAGTGCTCATATCATGGCCCGAAGCCAACTCAATGTATTTCACACTTG
1 AAGTGCTCATATCATGGCCCGAAGCCAAATCAATGTAGCTCACACCCG
* * * ** *
84600434 AAGTGCTAATATCATGGCCCAAAACCAAATCAATAAAGCTCGCACCCG
1 AAGTGCTCATATCATGGCCCGAAGCCAAATCAATGTAGCTCACACCCG
*
84600482 AAGTG-TCGATATCATGGCCCGAAGCCAAATTAATGTA
1 AAGTGCTC-ATATCATGGCCCGAAGCCAAATCAATGTA
84600519 AGTCGCACTA
Statistics
Matches: 67, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 66 0.99
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (48 bp):
AAGTGCTCATATCATGGCCCGAAGCCAAATCAATGTAGCTCACACCCG
Found at i:84606897 original size:25 final size:25
Alignment explanation
Indices: 84606869--84606918 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
84606859 GCTTATCATC
* *
84606869 ATTCAGGTAGGAGGAGCTTACCGTT
1 ATTCAGCTAGAAGGAGCTTACCGTT
*
84606894 ATTCAGCTCGAAGGAGCTTACCGTT
1 ATTCAGCTAGAAGGAGCTTACCGTT
84606919 TATAGCTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (25 bp):
ATTCAGCTAGAAGGAGCTTACCGTT
Found at i:84619919 original size:40 final size:39
Alignment explanation
Indices: 84619882--84619973 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
84619872 GCTACTCGTT
*
84619882 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
84619922 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
84619961 CAAATGCCTTCGG
1 CAAATGCCTTCGG
84619974 ATCTTAGTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:84619953 original size:39 final size:40
Alignment explanation
Indices: 84619863--84620026 Score: 167
Period size: 40 Copynumber: 4.1 Consensus size: 40
84619853 CGGAATTTAA
** *
84619863 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
84619903 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84619942 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
84619982 CTGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84620022 CCGGA
1 CCGGA
84620027 CATCATTCGA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 56 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84622821 original size:43 final size:42
Alignment explanation
Indices: 84622701--84622865 Score: 172
Period size: 43 Copynumber: 3.9 Consensus size: 42
84622691 GACTCGTACA
* * *
84622701 ATGCCAACGTTCC-AGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATG-TCCTAGACATGGTCTTACACGAAATCAAATA-CG
* * *
84622744 ATGCCAATTTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCTAGACATGGTCTTACACGAAATCAAATACG
** *
84622786 ATGCCGCTGTCCTAGACATGGTCTTACTCGTAAATCTCAAAT-CG
1 ATGCCAATGTCCTAGACATGGTCTTACACG-AAA--TCAAATACG
**
84622830 ATGCCAATGTCCTAGATGTGGTCTTACACGAAATCA
1 ATGCCAATGTCCTAGACATGGTCTTACACGAAATCA
84622866 CATATCAGAA
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 3 0.03
42 29 0.28
43 37 0.36
44 27 0.26
45 6 0.06
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACATGGTCTTACACGAAATCAAATACG
Found at i:84624189 original size:17 final size:17
Alignment explanation
Indices: 84624167--84624201 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
84624157 CATCTTTGGG
*
84624167 CTCCCACGTAGCCTTTT
1 CTCCCACCTAGCCTTTT
84624184 CTCCCACCTAGCCTTTT
1 CTCCCACCTAGCCTTTT
84624201 C
1 C
84624202 AACACCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.46, G:0.09, T:0.34
Consensus pattern (17 bp):
CTCCCACCTAGCCTTTT
Found at i:84625199 original size:47 final size:49
Alignment explanation
Indices: 84625074--84625204 Score: 151
Period size: 47 Copynumber: 2.7 Consensus size: 49
84625064 AGATATGTGA
* *
84625074 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCGAT
* * * * * *
84625124 -AGTCACTGTAAGGCCATATCTAGGACATGGCATC-GACTTGA-TGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGAT
*
84625170 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
84625205 AGCGTTATAC
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
46 4 0.06
47 28 0.42
48 6 0.09
49 28 0.42
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGAT
Found at i:84627940 original size:41 final size:41
Alignment explanation
Indices: 84627883--84628024 Score: 203
Period size: 41 Copynumber: 3.5 Consensus size: 41
84627873 ATCTGCTCCA
* * * ** * *
84627883 CTACTCCACTGTAACTTCAGGGAAATAAGGTTTATTTTGAT
1 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
*
84627924 CTACTCTACTGCAACTTCAGAGTGATAGGGTTCGTTTTGAT
1 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
84627965 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
1 CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
*
84628006 CTATTCTACTGCAACTTCA
1 CTACTCTACTGCAACTTCA
84628025 AAGAGGTAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 91 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (41 bp):
CTACTCTACTGCAACTTCAGAGTGATAGGGTTTGTTTTGAT
Found at i:84628558 original size:137 final size:136
Alignment explanation
Indices: 84628369--84628639 Score: 341
Period size: 137 Copynumber: 2.0 Consensus size: 136
84628359 AAACTGACGT
* * * *
84628369 TCAACTCATCTCTCGGATTATGAGTTAATTTTTTTAGAAAAAGTAAAAAAATTGAAAATACCTCA
1 TCAACTCATCTCTCGCAATATGAGTCAATTTTTTTAGAAAAAG-AAAAAAATTAAAAATACCTCA
** * * * *
84628434 GTGTGTGA-CCTGAGGCTCAACTCAGCTCTCGCAACATGAGTTGATTTTTTTGAAAAACAGAGAC
65 GCATGT-ATCCCGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTTTGAAAAACAGAAAC
84628498 TAAAAGGC
129 TAAAAGGC
* *
84628506 TCAACTCA-CTTCTCGCAATATGAGTCAGATTTTTTTTGAAAAA-AACATAAATTAAAAATACCT
1 TCAACTCATC-TCTCGCAATATGAGTCA-ATTTTTTTAGAAAAAGAA-AAAAATTAAAAATACCT
* * *
84628569 CAGCATGTATCCCGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTTTTTGAAAAATAGAAA
63 CAGCATGTATCCCGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTTTGAAAAACAGAAA
84628634 CTAAAA
128 CTAAAA
84628640 ATACCTCAGT
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
136 4 0.03
137 97 0.84
138 14 0.12
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (136 bp):
TCAACTCATCTCTCGCAATATGAGTCAATTTTTTTAGAAAAAGAAAAAAATTAAAAATACCTCAG
CATGTATCCCGAGGCTCAACTCACCTCTCACAACATGAGTTGATTTTTTTGAAAAACAGAAACTA
AAAGGC
Found at i:84628663 original size:77 final size:76
Alignment explanation
Indices: 84628502--84628778 Score: 317
Period size: 77 Copynumber: 3.6 Consensus size: 76
84628492 AGAGACTAAA
* * *
84628502 AGGCTCAACTCACTTCTCGCAATATGAGTCAGATTTTTTTTGAAAAAAACATAAATTAAAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGT-TGA-TTTTTTTG--AAAAATA-AAATTAAAAATAC
** *
84628567 CTCAGCATGT-ATCCCG
61 CTCAGTGTGTGA-CCTG
** *
84628583 AGGCTCAACTCACCTCTCATAATATGAGTTGATTTTTTTGAAAAATAGAAACTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATA-AAATTAAAAATACCTCA
84628648 GTGTGTGACCTG
65 GTGTGTGACCTG
* ** * *
84628660 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAACGT-AAATTGAAAATACCTCAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAAAATTAAAAATACCTCAG
* **
84628724 TGCGTGATTTG
66 TGTGTGACCTG
84628735 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
84628779 CAGGAATAAG
Statistics
Matches: 173, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
74 10 0.06
75 54 0.31
77 72 0.42
78 1 0.01
79 8 0.05
80 2 0.01
81 26 0.15
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAAAATTAAAAATACCTCAG
TGTGTGACCTG
Found at i:84633907 original size:40 final size:40
Alignment explanation
Indices: 84633845--84634103 Score: 391
Period size: 40 Copynumber: 6.5 Consensus size: 40
84633835 AAGCCAAGTA
* * * *
84633845 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
84633884 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84633924 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84633964 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
84634004 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84634044 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
84634085 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
84634104 TTATCATCCA
Statistics
Matches: 208, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
39 13 0.06
40 167 0.80
41 24 0.12
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84643830 original size:12 final size:12
Alignment explanation
Indices: 84643813--84643845 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
84643803 AAAAACATAC
84643813 TATATATAAATA
1 TATATATAAATA
*
84643825 TATATATACATA
1 TATATATAAATA
84643837 TATA-ATAAA
1 TATATATAAA
84643846 AACATTCACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
TATATATAAATA
Found at i:84643876 original size:3 final size:3
Alignment explanation
Indices: 84643855--84644195 Score: 100
Period size: 3 Copynumber: 111.3 Consensus size: 3
84643845 AAACATTCAC
* * * *
84643855 TAA TAT TAA T-A TGA TAA TAA TAA TAG TAA TAA TAT TAA -AA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * * *
84643899 TAA AAA AAA GTAA -ATA TAA -CA TAA TAA TAA TAT TAA -AA TAA -AG
1 TAA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
84643942 TAA TTAA AAA TAA TAC TATA TAA -ATA TATA TACA T-A TAA TAA -AA
1 TAA -TAA TAA TAA TAA TA-A TAA TA-A TA-A TA-A TAA TAA TAA TAA
* * * * *
84643986 CAT TCAC TAA TAT TAA TAA TAA TAA TAA TAC TAGA -AA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * **
84644032 CTAG TAA TAA TAA TACA TTAA GAA TAA TAA T-A TGT TAA TAA TAA TGAA
1 -TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * *
84644080 TTAG TGAA TTAA TAA CAA -AA CAG TAA GTAAA TAA -ACA CAA AAA TAA
1 -TAA T-AA -TAA TAA TAA TAA TAA TAA -T-AA TAA TA-A TAA TAA TAA
* * * * *
84644126 -AA T-A TAA TTA TAA TAG TAA CAT TAA CGAA GTAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA -TAA TAA TAA TAA TAA
84644171 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
84644196 GGCAAAACTA
Statistics
Matches: 250, Mismatches: 54, Indels: 68
0.67 0.15 0.18
Matches are distributed among these distances:
2 24 0.10
3 183 0.73
4 37 0.15
5 6 0.02
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:84643953 original size:29 final size:34
Alignment explanation
Indices: 84643893--84643965 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 34
84643883 ATAATATTAA
84643893 AATATATAAAAAAAAGTAAATATAACATAATAAT
1 AATATATAAAAAAAAGTAAATATAACATAATAAT
*
84643927 AATAT-TAAAATAAAGT-AAT-TAA-A-AATAAT
1 AATATATAAAAAAAAGTAAATATAACATAATAAT
*
84643956 ACTATATAAA
1 AATATATAAA
84643966 TATATATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
29 10 0.28
30 5 0.14
31 3 0.08
32 3 0.08
33 10 0.28
34 5 0.14
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (34 bp):
AATATATAAAAAAAAGTAAATATAACATAATAAT
Found at i:84644071 original size:31 final size:31
Alignment explanation
Indices: 84644005--84644076 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
84643995 ATATTAATAA
*
84644005 TAATAATAATACTAGAAATAATAATAACTAG
1 TAATAATAATACTAGAAAGAATAATAACTAG
**
84644036 TAATAATAATAC-ATTAAGAATAATAA-TATG
1 TAATAATAATACTAGAAAGAATAATAACTA-G
84644066 TTAATAATAAT
1 -TAATAATAAT
84644077 GAATTAGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.06
30 12 0.33
31 22 0.61
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (31 bp):
TAATAATAATACTAGAAAGAATAATAACTAG
Found at i:84644074 original size:17 final size:17
Alignment explanation
Indices: 84644002--84644076 Score: 68
Period size: 17 Copynumber: 4.6 Consensus size: 17
84643992 CTAATATTAA
84644002 TAATAATAATAATAC--
1 TAATAATAATAATACAT
*
84644017 TAGA-AATAATAATA-AC
1 TA-ATAATAATAATACAT
*
84644033 TAGTAATAATAATACAT
1 TAATAATAATAATACAT
* **
84644050 TAAGAATAATAATATGT
1 TAATAATAATAATACAT
84644067 TAATAATAAT
1 TAATAATAAT
84644077 GAATTAGTGA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
15 12 0.25
16 13 0.27
17 23 0.48
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.33
Consensus pattern (17 bp):
TAATAATAATAATACAT
Found at i:84649002 original size:14 final size:14
Alignment explanation
Indices: 84648965--84649003 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
84648955 ATATATTAGT
84648965 TTTTATTTGTTATTA
1 TTTTATTT-TTATTA
84648980 TTATT-TTTTTATTA
1 TT-TTATTTTTATTA
84648994 TTTTATTTTT
1 TTTTATTTTT
84649004 CCTTTTTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 13 0.59
15 5 0.23
16 2 0.09
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:84654183 original size:15 final size:15
Alignment explanation
Indices: 84654154--84654197 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
84654144 TCACACTGAT
84654154 AATAT-TTAAATATAA
1 AATATATTAAA-ATAA
*
84654169 AATATATTATAATAA
1 AATATATTAAAATAA
*
84654184 ATTATATTAAAATA
1 AATATATTAAAATA
84654198 TTTTATTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AATATATTAAAATAA
Found at i:84663215 original size:68 final size:67
Alignment explanation
Indices: 84663143--84663319 Score: 173
Period size: 67 Copynumber: 2.6 Consensus size: 67
84663133 CATCATGTGT
* * * *
84663143 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
84663205 ATGTAG
62 ATGTAG
** * *
84663211 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
84663276 AG
66 AG
* * * * *
84663278 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
84663320 TACTGAGTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 20 0.22
65 7 0.08
66 21 0.23
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:84663248 original size:64 final size:64
Alignment explanation
Indices: 84663167--84663350 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
84663157 AGACATTATG
* *
84663167 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
84663231 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84663296 AA
63 AA
* * * *
84663298 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
84663351 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 18 0.18
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84669048 original size:17 final size:17
Alignment explanation
Indices: 84669026--84669058 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
84669016 CCAAGTTAAG
84669026 GACATCAAAATGATAAT
1 GACATCAAAATGATAAT
84669043 GACATCAAAATGATAA
1 GACATCAAAATGATAA
84669059 GGACCTCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.21
Consensus pattern (17 bp):
GACATCAAAATGATAAT
Found at i:84675981 original size:13 final size:13
Alignment explanation
Indices: 84675960--84675999 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
84675950 AAAGTAATCG
*
84675960 CACACGGGCGTTT
1 CACACGGGCGTGT
*
84675973 CACATGGGCGTGT
1 CACACGGGCGTGT
*
84675986 CACACGGGTGTGT
1 CACACGGGCGTGT
84675999 C
1 C
84676000 CTTGCCGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:84682959 original size:63 final size:64
Alignment explanation
Indices: 84682747--84682960 Score: 189
Period size: 67 Copynumber: 3.2 Consensus size: 64
84682737 GATGTATACA
* * * *
84682747 ATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCAT-AGGTGATACTATGTGTA
1 ATGTATACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAAGTCACATGA-GTGATACTATGTGTA
84682811 CACC
61 CACC
* * ** * * * * *
84682815 ATGTATACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCTAGGTGAAGGACA
1 ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTA--TG-TGTACA
84682880 CC
63 CC
* * *
84682882 ATGTAAACAAGAGAGCTATGAGATA-AAGTGGCTAAGTCACATGAGTGATACTATGTGTACACC
1 ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTATGTGTACACC
*
84682945 ATGTGTACAAGAGAGC
1 ATGTATACAAGAGAGC
84682961 CAAAATTATG
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
63 20 0.17
64 25 0.21
65 2 0.02
66 23 0.19
67 29 0.24
68 21 0.17
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTATGTGTACACC
Found at i:84689789 original size:30 final size:30
Alignment explanation
Indices: 84689753--84689814 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
84689743 AGCATGAGAT
84689753 TGAATGATGTATGGAAAGAAATGCTTGATA
1 TGAATGATGTATGGAAAGAAATGCTTGATA
* *
84689783 TGAATGATGTTTGGAAAGAAATGTTTGATA
1 TGAATGATGTATGGAAAGAAATGCTTGATA
84689813 TG
1 TG
84689815 CTTTTGACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.02, G:0.27, T:0.34
Consensus pattern (30 bp):
TGAATGATGTATGGAAAGAAATGCTTGATA
Found at i:84704460 original size:24 final size:24
Alignment explanation
Indices: 84704425--84704600 Score: 208
Period size: 24 Copynumber: 7.0 Consensus size: 24
84704415 ACTTAGCACC
84704425 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
84704449 ATACCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
84704473 ATGCCATGGACTTATTTCATTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
84704497 CACATTGCCATGGGCTTATTTCATTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
84704525 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
84704549 CATATTGTCATAGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
84704577 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
84704601 CACAATTTCA
Statistics
Matches: 132, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
24 86 0.65
25 2 0.02
27 2 0.02
28 42 0.32
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:84704499 original size:76 final size:77
Alignment explanation
Indices: 84704413--84704600 Score: 233
Period size: 76 Copynumber: 2.5 Consensus size: 77
84704403 GGGAAATTTC
84704413 TCACTTAGCACCATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAG-A-TG
1 TCACTTAGCA-CATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGAATTG
*
84704476 CCATGGACTTATT
65 CCATAGACTTATT
* * * * *
84704489 TCATTTAGCACATTGCCATGGGCTTATTTCATTTAGATGCCATGGTCTTATTTCACTTAGCATAT
1 TCACTTAGCACA-TGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAG-A-AT
*
84704554 TGTCATAGACTTATT
63 TGCCATAGACTTATT
*
84704569 TCACTTAG---ATGCCATGGTCTTATTTCACTTAG
1 TCACTTAGCACATGCCATGGACTTATTTCACTTAG
84704601 CACAATTTCA
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
75 2 0.02
76 73 0.75
77 1 0.01
79 1 0.01
80 20 0.21
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (77 bp):
TCACTTAGCACATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGAATTGC
CATAGACTTATT
Found at i:84704612 original size:52 final size:51
Alignment explanation
Indices: 84704425--84704602 Score: 236
Period size: 52 Copynumber: 3.5 Consensus size: 51
84704415 ACTTAGCACC
* *
84704425 ATGCCATGGACTTATTTCACTTAG--A-TACCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCAATTGCCATAGACTTATTTCACTTAG
* * * *
84704473 ATGCCATGGACTTATTTCATTTAGCACATTGCCATGGGCTTATTTCATTTAG
1 ATGCCATGGACTTATTTCACTTAGCA-ATTGCCATAGACTTATTTCACTTAG
* *
84704525 ATGCCATGGTCTTATTTCACTTAGCATATTGTCATAGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCA-ATTGCCATAGACTTATTTCACTTAG
*
84704577 ATGCCATGGTCTTATTTCACTTAGCA
1 ATGCCATGGACTTATTTCACTTAGCA
84704603 CAATTTCATA
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
48 23 0.20
51 1 0.01
52 91 0.79
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (51 bp):
ATGCCATGGACTTATTTCACTTAGCAATTGCCATAGACTTATTTCACTTAG
Found at i:84708932 original size:46 final size:46
Alignment explanation
Indices: 84708865--84708994 Score: 233
Period size: 46 Copynumber: 2.8 Consensus size: 46
84708855 ATGTAACCCG
* *
84708865 CCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 CCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
84708911 CCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
1 CCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
*
84708957 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
84708995 TGCCCAAATA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.17
Consensus pattern (46 bp):
CCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA
Found at i:84714781 original size:40 final size:40
Alignment explanation
Indices: 84714573--84714835 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
84714563 CCAGCATGAT
* * *
84714573 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
84714613 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
84714653 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
84714693 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
84714733 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
84714774 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
84714814 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
84714836 CATCATTCGA
Statistics
Matches: 192, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 169 0.88
41 20 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:84715180 original size:29 final size:29
Alignment explanation
Indices: 84715141--84715219 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
84715131 CTTAATAATC
*
84715141 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
84715171 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
84715200 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
84715220 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:84715262 original size:43 final size:43
Alignment explanation
Indices: 84715201--84715303 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
84715191 TGCATTTCAA
84715201 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84715244 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84715287 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
84715304 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:84717219 original size:37 final size:37
Alignment explanation
Indices: 84717169--84717247 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
84717159 TTATTACGAA
* * *
84717169 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
84717206 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
84717243 GTCTT
1 GTCTT
84717248 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:84717444 original size:47 final size:47
Alignment explanation
Indices: 84717366--84720451 Score: 6019
Period size: 47 Copynumber: 65.6 Consensus size: 47
84717356 CCCTTCGGGA
* * * * * *
84717366 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84717413 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717460 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717507 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717601 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717648 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717695 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717742 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717789 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717836 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717930 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84717977 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718024 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718071 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718118 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718165 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718259 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718306 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718353 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718400 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718447 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718541 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718588 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718635 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718682 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718729 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718823 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718917 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84718964 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719011 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719058 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719105 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719152 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84719246 CTTCTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719293 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84719342 CTTCTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719389 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719436 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719483 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719530 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719577 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719624 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84719671 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84719720 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84719767 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719814 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719861 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719908 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84719955 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720002 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720049 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720096 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720143 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720190 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720237 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720284 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84720425 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
84720452 TATTCAAATA
Statistics
Matches: 3017, Mismatches: 18, Indels: 8
0.99 0.01 0.00
Matches are distributed among these distances:
47 2926 0.97
49 91 0.03
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84732374 original size:33 final size:33
Alignment explanation
Indices: 84732332--84732398 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
84732322 AAACACACAC
84732332 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
1 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
84732365 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
1 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
84732398 A
1 A
84732399 TAAATAAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (33 bp):
AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
Found at i:84732787 original size:43 final size:42
Alignment explanation
Indices: 84732730--84732811 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 42
84732720 AATGCCAACG
* * * *
84732730 TCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTA
1 TCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGCCACTA
84732773 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCA
1 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCA
84732812 ACGTCCAGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 7 0.20
43 28 0.80
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCACTA
Found at i:84734411 original size:41 final size:41
Alignment explanation
Indices: 84734299--84734411 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
84734289 CACTATACCA
* * * *
84734299 ATGCCATATCCCATATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATATCATATCG
* * *
84734341 ATGCCAATAGCCTAGCTATGGTCTTACACGAATATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAATATCATATCG
* *
84734383 ATGTCATATCCCAGATTTGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
84734412 TAATCTCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
41 20 0.34
42 20 0.34
43 18 0.31
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATATCATATCG
Found at i:84741796 original size:43 final size:42
Alignment explanation
Indices: 84741721--84741830 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
84741711 ATACCAATGT
* * *
84741721 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATAGCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
*
84741763 CAATAGCCCAGCTATGGTCTTACACGA-AGTCTCATATCGATGC
1 C-ATAGCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGC
*
84741806 CATATCCC-GAATATGGTCTTACACG
1 CATAGCCCAG-ATATGGTCTTACACG
84741831 TAATCTTAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 22 0.37
43 36 0.61
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
Found at i:84745043 original size:27 final size:27
Alignment explanation
Indices: 84744992--84745153 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
84744982 ACAAAGGGGT
* * * * *
84744992 AAAATAGTCATCTTACCATAAAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
84745019 AAAATAATCATTTTATCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
84745046 AAAACAGTCATTTTACCACATACGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* *
84745073 AAAACAGCCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
84745100 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
84745127 AAAATAGTCATTTCACTACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
84745154 TGTAGAAGGC
Statistics
Matches: 117, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:84746190 original size:27 final size:27
Alignment explanation
Indices: 84746161--84746223 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
84746151 TATTATTATT
* *
84746161 TATTA-TAGTACTATTATTA-TCTT-C
1 TATTATTATTACTATTACTATTCTTGC
*
84746185 TATTATCATTACTATTACTATTCTTGC
1 TATTATTATTACTATTACTATTCTTGC
84746212 TATTATTTATTA
1 TATTA-TTATTA
84746224 TCGTTATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
24 5 0.16
25 11 0.35
26 4 0.13
27 6 0.19
28 5 0.16
ACGTcount: A:0.29, C:0.13, G:0.03, T:0.56
Consensus pattern (27 bp):
TATTATTATTACTATTACTATTCTTGC
Found at i:84746330 original size:17 final size:17
Alignment explanation
Indices: 84746228--84746361 Score: 92
Period size: 17 Copynumber: 7.7 Consensus size: 17
84746218 TTATTATCGT
*
84746228 TATTATTATTCA-TATTA
1 TATTATTATT-ATTACTA
* *
84746245 TTATTATTATGTTTTACCA
1 -TATTATTAT-TATTACTA
*
84746264 T-TTATTATTATTATTA
1 TATTATTATTATTACTA
*
84746280 TTATTATTATTATTATTA
1 -TATTATTATTATTACTA
* * *
84746298 CTACTACTACTATTACTA
1 -TATTATTATTATTACTA
*
84746316 TATTGTTATTATTACTA
1 TATTATTATTATTACTA
* *
84746333 TCTTATTATCATTACTA
1 TATTATTATTATTACTA
* *
84746350 TACTATTTTTAT
1 TATTATTATTAT
84746362 CGATTACTCT
Statistics
Matches: 90, Mismatches: 22, Indels: 9
0.74 0.18 0.07
Matches are distributed among these distances:
16 5 0.06
17 43 0.48
18 38 0.42
19 4 0.04
ACGTcount: A:0.31, C:0.10, G:0.01, T:0.58
Consensus pattern (17 bp):
TATTATTATTATTACTA
Found at i:84746341 original size:3 final size:3
Alignment explanation
Indices: 84746148--84746329 Score: 102
Period size: 3 Copynumber: 59.7 Consensus size: 3
84746138 TAATTTAATC
* * *
84746148 TAT TAT TAT TATT TAT TA- TAG TAC TAT TAT TAT CT-T CTAT TAT CAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT
* * * ** **
84746194 TAC TAT TAC TAT TCT TGC TAT TATT TAT TAT CGT TAT TAT TAT TCA-
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT
* * *
84746240 TAT TAT TAT TAT TAT GTTT TAC CATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * *
84746287 TAT TAT TAT TAC TAC TAC TAC TAT TAC TA- TAT TGT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
84746330 CTATCTTATT
Statistics
Matches: 141, Mismatches: 28, Indels: 20
0.75 0.15 0.11
Matches are distributed among these distances:
2 5 0.04
3 124 0.88
4 12 0.09
ACGTcount: A:0.30, C:0.09, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:84746369 original size:21 final size:22
Alignment explanation
Indices: 84746328--84746369 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
84746318 TTGTTATTAT
84746328 TACTATCTTATTATCATTACTA
1 TACTATCTTATTATCATTACTA
84746350 TACTAT-TT-TTATCGATTACT
1 TACTATCTTATTATC-ATTACT
84746370 CTTCAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 8 0.42
22 6 0.32
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.52
Consensus pattern (22 bp):
TACTATCTTATTATCATTACTA
Found at i:84764452 original size:40 final size:40
Alignment explanation
Indices: 84764421--84764670 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
84764411 GGACTAAGAT
* *
84764421 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTAAGTC
* *
84764461 CCGAAGGCCTTTGTGCGAGATA-CTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
* *
84764501 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* *
84764541 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * *
84764581 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * * *
84764621 CCGAAGGCATT-GTGTGAGTTA-CTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
84764660 CCGAAGGCATT
1 CCGAAGGCATT
84764671 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.17
40 158 0.81
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
Found at i:84764505 original size:80 final size:79
Alignment explanation
Indices: 84764368--84764670 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 79
84764358 TTGAATGCTG
* * * * * **
84764368 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
84764431 TTGTGCGAGATACAAA
64 TCGTGCGAGTTATAAA
* *
84764447 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
84764512 CGTGCGAGTTATTAAA
65 CGTGCGAGTTA-TAAA
* * *
84764528 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
84764593 GTGCGAGTTGTTAAA
66 GTGCGAGTT-ATAAA
* * * * * *
84764608 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
84764671 TGAACGAGGA
Statistics
Matches: 192, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.19
80 145 0.76
81 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATAAA
Found at i:84764584 original size:120 final size:119
Alignment explanation
Indices: 84764368--84764670 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
84764358 TTGAATGCTG
* * * * * *
84764368 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * *
84764432 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
84764488 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* * * * **
84764553 GTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * * *
84764608 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
84764671 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:84770561 original size:40 final size:40
Alignment explanation
Indices: 84770517--84770740 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
84770507 AAGTGAATAT
* * * * **
84770517 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
84770557 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
84770597 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
84770637 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
84770677 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
84770716 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
84770741 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:84770615 original size:80 final size:80
Alignment explanation
Indices: 84770478--84770740 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
84770468 TTGAATGCTG
* * * * *
84770478 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
84770540 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
84770558 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
84770623 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
84770638 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
84770702 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
84770717 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84770741 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:84770692 original size:120 final size:120
Alignment explanation
Indices: 84770478--84770740 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
84770468 TTGAATGCTG
* * *
84770478 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
84770542 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
84770598 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
84770660 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
84770717 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84770741 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:84772225 original size:49 final size:49
Alignment explanation
Indices: 84772171--84772269 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
84772161 CAAGAAACAC
*
84772171 ATTTATCAAACATATCCC-ACCCAAAAAGTGACCAACATTTCTGAAAGAA
1 ATTTATCAAACATATCCCTACCC-AAAAGTGACAAACATTTCTGAAAGAA
* *
84772220 ATTTATCAAACATATCCCTTCCCAAAATTGACAAACATTTCTGAAAGAA
1 ATTTATCAAACATATCCCTACCCAAAAGTGACAAACATTTCTGAAAGAA
84772269 A
1 A
84772270 GTCGGATACA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 43 0.93
50 3 0.07
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.25
Consensus pattern (49 bp):
ATTTATCAAACATATCCCTACCCAAAAGTGACAAACATTTCTGAAAGAA
Found at i:84774930 original size:18 final size:20
Alignment explanation
Indices: 84774885--84774921 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
84774875 AGAAGAATTA
*
84774885 TTATTCTAAGAAAATAAAAT
1 TTATACTAAGAAAATAAAAT
84774905 TTATACTAAG-AAATAAA
1 TTATACTAAGAAAATAAA
84774922 TTCTAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
TTATACTAAGAAAATAAAAT
Found at i:84776414 original size:19 final size:19
Alignment explanation
Indices: 84776390--84776433 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
84776380 TAAACGCAAC
84776390 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
84776409 ACAACATGATTCCAAATAA
1 ACAACATCAACCCAAATAA
84776428 ACAACA
1 ACAACA
84776434 AAAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:84779270 original size:90 final size:91
Alignment explanation
Indices: 84779088--84779259 Score: 276
Period size: 90 Copynumber: 1.9 Consensus size: 91
84779078 TAGGTATAGC
* * *
84779088 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACATTTTAAACTTTAAAGTTAGTTAATTGC
1 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGA
84779153 AGCCTAAATTAATATAATAGTACAAT
66 AGCCTAAATTAATATAATAGTACAAT
* *
84779179 AGCATAAATTAAAC-AAAAAAAAGTTTGTTAAGCTATC-GTTTAAAATTTAAAGTTAGTTAATTG
1 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTA-CAGTTTAAAATTTAAAGTTAGTTAATTG
84779242 AAGCCTAAATTAATATAA
65 AAGCCTAAATTAATATAA
84779260 ATATATAATA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 60 0.80
91 15 0.20
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.33
Consensus pattern (91 bp):
AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGA
AGCCTAAATTAATATAATAGTACAAT
Found at i:84779284 original size:90 final size:89
Alignment explanation
Indices: 84779091--84779284 Score: 241
Period size: 90 Copynumber: 2.1 Consensus size: 89
84779081 GTATAGCAGC
* * * *
84779091 ATAAATTAAACAAAAAAAAAGTATGTTAAACTACATTTTAAACTTTAAAGTTAGTTAATTGCAGC
1 ATAAAGTAAAC-AAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGAAGC
84779156 CTAAATTAATATAATAGTACAATAG
65 CTAAATTAATATAATAGTACAATAG
* * *
84779181 CATAAATTAAACAAAAAAAAGTTTGTTAAGCTATC-GTTTAAAATTTAAAGTTAGTTAATTGAAG
1 -ATAAAGTAAACAAAAAAAAGTATGTTAAACTA-CAGTTTAAAATTTAAAGTTAGTTAATTGAAG
*
84779245 CCTAAATTAATATAAATA-TATAATAG
64 CCTAAATTAATAT-AATAGTACAATAG
84779271 -TACAAGTACAACAA
1 ATA-AAGTA-AACAA
84779285 CATAAATTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
88 2 0.02
89 4 0.04
90 70 0.76
91 16 0.17
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (89 bp):
ATAAAGTAAACAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGAAGCC
TAAATTAATATAATAGTACAATAG
Found at i:84779525 original size:17 final size:17
Alignment explanation
Indices: 84779503--84779535 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
84779493 TTTTCTCTAA
84779503 TAATATTACATTATTAC
1 TAATATTACATTATTAC
84779520 TAATATTACATTATTA
1 TAATATTACATTATTA
84779536 GTTTGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATATTACATTATTAC
Done.