Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 257 of 310
Found at i:84779812 original size:17 final size:17
Alignment explanation
Indices: 84779790--84779822 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
84779780 TTTTCTCTAA
84779790 TAATATTACATTATTAC
1 TAATATTACATTATTAC
84779807 TAATATTACATTATTA
1 TAATATTACATTATTA
84779823 GTTTGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATATTACATTATTAC
Found at i:84779916 original size:287 final size:287
Alignment explanation
Indices: 84779400--84779972 Score: 1146
Period size: 287 Copynumber: 2.0 Consensus size: 287
84779390 TTAAATATGA
84779400 TAATCCAATATTTTATTCATCATTTAATGTTATTTTATCAAATTGTATTAGCAAACAGCAAAATC
1 TAATCCAATATTTTATTCATCATTTAATGTTATTTTATCAAATTGTATTAGCAAACAGCAAAATC
84779465 CTTTAAAAAGAAGTACATTTTATCAATTTTTTCTCTAATAATATTACATTATTACTAATATTACA
66 CTTTAAAAAGAAGTACATTTTATCAATTTTTTCTCTAATAATATTACATTATTACTAATATTACA
84779530 TTATTAGTTTGGGAAATTATTTGGCTAACATTTTTTCTCTATTAATTAATATTACATTATTACAA
131 TTATTAGTTTGGGAAATTATTTGGCTAACATTTTTTCTCTATTAATTAATATTACATTATTACAA
84779595 TATTATATTAAGTTGTGCTTCTTGGCCCTGCTTAATTAATAATAATAATAATAAATTTTACATCT
196 TATTATATTAAGTTGTGCTTCTTGGCCCTGCTTAATTAATAATAATAATAATAAATTTTACATCT
84779660 TCCAAATCAAAAGACAAACAACAATCT
261 TCCAAATCAAAAGACAAACAACAATCT
84779687 TAATCCAATATTTTATTCATCATTTAATGTTATTTTATCAAATTGTATTAGCAAACAGCAAAATC
1 TAATCCAATATTTTATTCATCATTTAATGTTATTTTATCAAATTGTATTAGCAAACAGCAAAATC
84779752 CTTTAAAAAGAAGTACATTTTATCAATTTTTTCTCTAATAATATTACATTATTACTAATATTACA
66 CTTTAAAAAGAAGTACATTTTATCAATTTTTTCTCTAATAATATTACATTATTACTAATATTACA
84779817 TTATTAGTTTGGGAAATTATTTGGCTAACATTTTTTCTCTATTAATTAATATTACATTATTACAA
131 TTATTAGTTTGGGAAATTATTTGGCTAACATTTTTTCTCTATTAATTAATATTACATTATTACAA
84779882 TATTATATTAAGTTGTGCTTCTTGGCCCTGCTTAATTAATAATAATAATAATAAATTTTACATCT
196 TATTATATTAAGTTGTGCTTCTTGGCCCTGCTTAATTAATAATAATAATAATAAATTTTACATCT
84779947 TCCAAATCAAAAGACAAACAACAATC
261 TCCAAATCAAAAGACAAACAACAATC
84779973 AAAGGTTTCA
Statistics
Matches: 286, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
287 286 1.00
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (287 bp):
TAATCCAATATTTTATTCATCATTTAATGTTATTTTATCAAATTGTATTAGCAAACAGCAAAATC
CTTTAAAAAGAAGTACATTTTATCAATTTTTTCTCTAATAATATTACATTATTACTAATATTACA
TTATTAGTTTGGGAAATTATTTGGCTAACATTTTTTCTCTATTAATTAATATTACATTATTACAA
TATTATATTAAGTTGTGCTTCTTGGCCCTGCTTAATTAATAATAATAATAATAAATTTTACATCT
TCCAAATCAAAAGACAAACAACAATCT
Found at i:84780468 original size:23 final size:21
Alignment explanation
Indices: 84780440--84780482 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
84780430 GGATTTGGGT
84780440 TTGGGCAAATAAGTCTTTGGGGC
1 TTGGGCAAATAAG-C-TTGGGGC
*
84780463 TTGGGCAGATAAGCTTGGGG
1 TTGGGCAAATAAGCTTGGGG
84780483 AAGTAGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.28
Consensus pattern (21 bp):
TTGGGCAAATAAGCTTGGGGC
Found at i:84784005 original size:3 final size:3
Alignment explanation
Indices: 84783999--84784034 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
84783989 ATAATAATAA
84783999 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
84784035 AGTTCATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:84790856 original size:34 final size:34
Alignment explanation
Indices: 84790813--84790877 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
84790803 AAAGGCAGCC
84790813 AAAAAGAAAAACAAAAATACAAAA-AATAAAAAAG
1 AAAAAGAAAAACAAAAATA-AAAACAATAAAAAAG
* *
84790847 AAAAAGAAAAATAAGAATAAAAACAATAAAA
1 AAAAAGAAAAACAAAAATAAAAACAATAAAA
84790878 CAAATGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.82, C:0.05, G:0.06, T:0.08
Consensus pattern (34 bp):
AAAAAGAAAAACAAAAATAAAAACAATAAAAAAG
Found at i:84791424 original size:22 final size:21
Alignment explanation
Indices: 84791392--84791453 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
84791382 TGAGAAAAAA
84791392 AATCAAAAAATTAAAAAAATC
1 AATCAAAAAATTAAAAAAATC
* *
84791413 AATCAAAAAAATCAAAAAAATT
1 AATC-AAAAAATTAAAAAAATC
84791435 AAT-AAAAAATTAATAAAAA
1 AATCAAAAAATTAA-AAAAA
84791454 GAGAAAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 9 0.25
21 9 0.25
22 18 0.50
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (21 bp):
AATCAAAAAATTAAAAAAATC
Found at i:84793026 original size:44 final size:46
Alignment explanation
Indices: 84792978--84793080 Score: 108
Period size: 44 Copynumber: 2.3 Consensus size: 46
84792968 AGCCATCAGC
* ** *
84792978 CTTATCTCT-CTCAGGTAGCAA-GAGAGCAGGTTGAAGATTATAG-T
1 CTTATCTCTCCTAAGGTAGCAAGGA-AGCAGACTAAAGATTATAGAT
* *
84793022 CTTAT-TTTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTGTAGAT
1 CTTATCTCTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTATAGAT
84793067 CTTATCTC-CCTAAG
1 CTTATCTCTCCTAAG
84793081 TAGTAGTGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
43 2 0.04
44 31 0.65
45 14 0.29
46 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (46 bp):
CTTATCTCTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTATAGAT
Found at i:84793092 original size:177 final size:177
Alignment explanation
Indices: 84792718--84793977 Score: 1659
Period size: 177 Copynumber: 7.1 Consensus size: 177
84792708 TCAGACTTTG
* * * * * **
84792718 TCTCCCTAAATAGTAGTGGAGCAAATCGGAAG-CGACAAATCTTATCTTCCTAAGGTAGTAGGGG
1 TCTCCCTAAGTAGTAGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGG
* ** * * *
84792782 AGCAGATTTTAGCTATTAGCCTTATCTTTCTGAGGTAGTAAGAGAGTAGGTTGAAGA-TGTAGTC
65 AGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* * ** * *
84792846 TTATCTTCCTAAGATAGCAATAAAGCAGACTGAGGATTGTAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* * * * *
84792894 TCTCCCTAAGCAGTAGTGGAGCAGA-CAGAATATGGCGAATCTTATCTTCCTGAGGTATTAAGGG
1 TCTCCCTAAGTAGTAGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGG
* * * *
84792958 AGTAGATTTTAGCCATCAGCCTTATCTCTCTCAGGTAGCAAGAGAGCAGGTTGAAGATTATAGTC
65 AGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* *
84793023 TTATTTTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
** * *
84793071 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTTCGATGTAGCAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* *
84793136 GCATATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* *
84793201 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* * * **
84793248 TCTCCCTAAGTAGTAGTGAAACAGATCGAAGATAGCGAATCTTATCTTCCCGAGGTAACAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
*
84793313 GCAGATTTTAGCCACCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* * *
84793378 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGATGATTTTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* * * * * *
84793425 TCTCCCTAAGTAGTAGTGAAACAGATCAAAGATAGCGAATCTCATCTTCCCGAGGTAGTAGGGAA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* *
84793490 GCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGGAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
*
84793555 TATCTTCCTGAGGTAACAAGGAAGCAGACTAAAGATTGTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* *
84793602 TCTCCTTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* * * *
84793667 GCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTAAAAATTGTAGTCA
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* *
84793732 TATCTTCCTGAGGTAGCAAAGAAGCAGACT-GAGAATTGTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAG-ATTGTAGATCTTA
* * * * *
84793779 TCTTCCTAAGCAGTAGTTGAGCAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGTAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* * * * * * *** *
84793844 ACAGATTTTAGTCACTAGCCTTATCTC-CTTGAGGTAGCAAGGGAGAAAGCCAAAGATTTTAGTC
66 GCAGATTTTAGCCACCAGCCTTATCTCTC-TGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* * * *
84793908 TTATCTTCCTAAGGTAGCAGGGAAGCAGA-TAGAAGGTTGAAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTA-AAGATTGTAGATCTTA
* *
84793956 TCTCCCTGAGTTTGTAGTGGAG
1 TCTCCCTAAG-TAGTAGTGGAG
84793978 TAGACTGAAA
Statistics
Matches: 963, Mismatches: 113, Indels: 14
0.88 0.10 0.01
Matches are distributed among these distances:
175 4 0.00
176 102 0.11
177 846 0.88
178 11 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (177 bp):
TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
Found at i:84793200 original size:44 final size:45
Alignment explanation
Indices: 84793152--84793785 Score: 240
Period size: 44 Copynumber: 14.3 Consensus size: 45
84793142 TTTAGCCACC
*
84793152 AGTCTTATCTCT-CTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* *
84793196 AGTCTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGAAGATTAT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * * *
84793240 AGATCTTATCTC-CCT-AAGTAG-TAGTGAAACAGATCGAAGATAGCG
1 AG-TCTTATCTCTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * * ** *****
84793285 AATCTTATCT-TCCCGAGGTAACAGGGGAGCAGATTTTAGCCACC
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * *
84793329 AGCCTTATCTCT-TTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
84793373 AGTCTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGATGATTTT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * ** * *
84793417 AGATCTTATCTC-CCT-AAGTAG-TAGTGAAACAGATCAAAGATAGCG
1 AG-TCTTATCTCTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * * ** *****
84793462 AATCTCATCT-TCCCGAGGTAGTAGGGAAGCAGATTTTAGCCACC
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * *
84793506 AGCCTTATCTCT-CTAAGGTAGGAA-GAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
84793550 AGTCTTATCT-TCCTGAGGTAACAAGGAAGCAGACTAAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * * * *
84793594 AGATCTTA--TCTCCTTAAGTAG-TAGTGGAGCAGATCGAAGATGGCG
1 AG-TCTTATCTCTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * ** *****
84793639 AATCTTATCT-TCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACC
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * *
84793683 AGCCTTATCTCT-CTAAGGTAGCAA-GAGAGCAGGTTAAAAATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
84793727 AGTCATATCT-TCCTGAGGTAGCAAAGAAGCAGACTG-AGAATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAG-ATTGT
84793771 AGATCTTATCT-TCCT
1 AG-TCTTATCTCTCCT
84793786 AAGCAGTAGT
Statistics
Matches: 413, Mismatches: 140, Indels: 73
0.66 0.22 0.12
Matches are distributed among these distances:
43 16 0.04
44 292 0.71
45 101 0.24
46 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
Found at i:84803292 original size:40 final size:40
Alignment explanation
Indices: 84803237--84803452 Score: 314
Period size: 40 Copynumber: 5.4 Consensus size: 40
84803227 GATGATAACG
* *
84803237 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
84803277 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
84803317 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
84803357 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
84803397 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
84803437 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
84803453 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 149 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:84805068 original size:19 final size:19
Alignment explanation
Indices: 84805044--84805081 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
84805034 TTTGGCCTAT
84805044 TTTCTCCATT-TTTGGCTCG
1 TTTCT-CATTCTTTGGCTCG
84805063 TTTCTCATTCCTTTGGCTC
1 TTTCTCATT-CTTTGGCTC
84805082 TCCTATGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.05, C:0.29, G:0.13, T:0.53
Consensus pattern (19 bp):
TTTCTCATTCTTTGGCTCG
Found at i:84811233 original size:40 final size:40
Alignment explanation
Indices: 84811154--84811371 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
84811144 AAACCAAGTA
* * *
84811154 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
84811193 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84811233 CCTTCGGGACTTAGCCCGGGA-ATAGTCACTCGTACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
84811273 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84811313 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84811353 CCTTCGGGACTTGGCCCGG
1 CCTTCGGGACTTAGCCCGG
84811372 TTATCATTCG
Statistics
Matches: 161, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84811286 original size:80 final size:80
Alignment explanation
Indices: 84811154--84811375 Score: 340
Period size: 80 Copynumber: 2.8 Consensus size: 80
84811144 AAACCAAGTA
* * * *
84811154 CCTTCGGAATTTAG-CCGGATATAG-CTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGAAATAGTC-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
84811217 ATAACTCGCACAAATG
65 ATAACTCGCACAAATG
* * * *
84811233 CCTTCGGGACTTAGCCCGGGAATAGTCACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAA
84811298 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
84811313 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTGGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
84811376 CATTCGAATA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 12 0.09
80 116 0.90
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAA
TAACTCGCACAAATG
Found at i:84812720 original size:95 final size:95
Alignment explanation
Indices: 84812557--84812748 Score: 366
Period size: 95 Copynumber: 2.0 Consensus size: 95
84812547 CTTGGCCGAA
*
84812557 TATCAAACCTCCTAACAATCAAAACTTAAGCCATGGAATGATTAGAACTTAAATTAACCACCTTC
1 TATCAAACCTCCTAACAATCAAAACTTAAGCCATGGAATGATTAGAACTTAAACTAACCACCTTC
84812622 TTTATACAAAATTTTCCAAGAATTTCAAGG
66 TTTATACAAAATTTTCCAAGAATTTCAAGG
*
84812652 TATCAAACCTCCTAACAATCAAAACTTAAGCCATGGAATGATTAGAACTTGAACTAACCACCTTC
1 TATCAAACCTCCTAACAATCAAAACTTAAGCCATGGAATGATTAGAACTTAAACTAACCACCTTC
84812717 TTTATACAAAATTTTCCAAGAATTTCAAGG
66 TTTATACAAAATTTTCCAAGAATTTCAAGG
84812747 TA
1 TA
84812749 CTTACCTCTT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (95 bp):
TATCAAACCTCCTAACAATCAAAACTTAAGCCATGGAATGATTAGAACTTAAACTAACCACCTTC
TTTATACAAAATTTTCCAAGAATTTCAAGG
Found at i:84815689 original size:119 final size:118
Alignment explanation
Indices: 84815478--84815714 Score: 456
Period size: 119 Copynumber: 2.0 Consensus size: 118
84815468 TAACGGATTT
*
84815478 ATTCTAGTCATAAACTTTAAAAACCTGCCAAGAGAAGGAAAAGTAAATTAATAAATAATAATAAA
1 ATTCTAGTCATAAACTATAAAAACCTGCCAAGAGAAGGAAAAGTAAATTAATAAATAATAATAAA
84815543 TTAAAGTGCACGAAAAATAAATGGCTAAAGTAATAAAAATTAAGTTCCTAATA
66 TTAAAGTGCACGAAAAATAAATGGCTAAAGTAATAAAAATTAAGTTCCTAATA
84815596 NATTCTAGTCATAAACTATAAAAACCTGCCAAGAGAAGGAAAAGTAAATTAATAAATAATAATAA
1 -ATTCTAGTCATAAACTATAAAAACCTGCCAAGAGAAGGAAAAGTAAATTAATAAATAATAATAA
84815661 ATTAAAGTGCACGAAAAATAAATGGCTAAAGTAATAAAAATTAAGTTCCTAATA
65 ATTAAAGTGCACGAAAAATAAATGGCTAAAGTAATAAAAATTAAGTTCCTAATA
84815715 TTTCAGTTCC
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 117 1.00
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (118 bp):
ATTCTAGTCATAAACTATAAAAACCTGCCAAGAGAAGGAAAAGTAAATTAATAAATAATAATAAA
TTAAAGTGCACGAAAAATAAATGGCTAAAGTAATAAAAATTAAGTTCCTAATA
Found at i:84824094 original size:41 final size:41
Alignment explanation
Indices: 84824037--84824121 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
84824027 TATCTTGCAA
*
84824037 AGAAAGTTGTTGAAATCCATCTTCCATGACTACCAAATCCT
1 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
84824078 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
1 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
84824119 AGA
1 AGA
84824122 CCTGTCCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (41 bp):
AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
Found at i:84828631 original size:21 final size:22
Alignment explanation
Indices: 84828607--84828657 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
84828597 TTAATTATTA
84828607 AAATATAAAAA-TTATAAATAT
1 AAATATAAAAATTTATAAATAT
* *
84828628 AAATATAAAAATTTATATATTT
1 AAATATAAAAATTTATAAATAT
84828650 AAA-ATAAA
1 AAATATAAA
84828658 TTTCAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATATAAAAATTTATAAATAT
Found at i:84828703 original size:33 final size:33
Alignment explanation
Indices: 84828619--84828709 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 33
84828609 ATATAAAAAT
*
84828619 TATAAATA-TAAATATAAA-AATTTATATATTTAA
1 TATAAATATTAAATA-AAATAA-TTATATACTTAA
* *
84828652 AATAAAT-TTCAAAAAAAATAATTATATACTTAA
1 TATAAATATT-AAATAAAATAATTATATACTTAA
*
84828685 TATAAATATTACATAAAATATATTA
1 TATAAATATTAAATAAAATA-ATTA
84828710 GAGTATAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
33 35 0.74
34 12 0.26
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (33 bp):
TATAAATATTAAATAAAATAATTATATACTTAA
Found at i:84844893 original size:119 final size:119
Alignment explanation
Indices: 84844682--84844921 Score: 480
Period size: 119 Copynumber: 2.0 Consensus size: 119
84844672 CGCCTCTGTC
84844682 ACTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTT
1 ACTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTT
84844747 GGATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTA
66 GGATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTA
84844801 ACTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTT
1 ACTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTT
84844866 GGATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTA
66 GGATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTA
84844920 AC
1 AC
84844922 CTAGCTTTGA
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (119 bp):
ACTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTT
GGATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTA
Found at i:84846961 original size:26 final size:26
Alignment explanation
Indices: 84846914--84846982 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 26
84846904 TCTCATCCCT
* ** *
84846914 ATTTTACCCCTAACAAAATTTTGAAA
1 ATTTTACCCTTAGTAAATTTTTGAAA
* **
84846940 ATTTTATCCTTAGTAAATTTTTGACG
1 ATTTTACCCTTAGTAAATTTTTGAAA
*
84846966 ATTTTACCCTTGGTAAA
1 ATTTTACCCTTAGTAAA
84846983 ATTTCAAGAA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTTAGTAAATTTTTGAAA
Found at i:84852890 original size:25 final size:25
Alignment explanation
Indices: 84852862--84852909 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
84852852 AAGTTTAAAA
84852862 TGAAAATACTGGAGATAGTATATTT
1 TGAAAATACTGGAGATAGTATATTT
* * * *
84852887 TGAAACTATTGTAGGTAGTATAT
1 TGAAAATACTGGAGATAGTATAT
84852910 GGTGAAAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.38
Consensus pattern (25 bp):
TGAAAATACTGGAGATAGTATATTT
Found at i:84858007 original size:22 final size:22
Alignment explanation
Indices: 84857982--84858024 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
84857972 TCCCATATCT
*
84857982 TTTTATT-TTTGTTTTCAAAATA
1 TTTTATTCTTT-TTTTAAAAATA
*
84858004 TTTTCTTCTTTTTTTAAAAAT
1 TTTTATTCTTTTTTTAAAAAT
84858025 TCCCAAGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTATTCTTTTTTTAAAAATA
Found at i:84860033 original size:12 final size:12
Alignment explanation
Indices: 84860016--84860045 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
84860006 CTCCAATTTT
84860016 CACACGACCTAG
1 CACACGACCTAG
*
84860028 CACACGACCTGG
1 CACACGACCTAG
84860040 CACACG
1 CACACG
84860046 GGCGTGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.43, G:0.20, T:0.07
Consensus pattern (12 bp):
CACACGACCTAG
Found at i:84863945 original size:43 final size:44
Alignment explanation
Indices: 84863896--84864052 Score: 187
Period size: 43 Copynumber: 3.6 Consensus size: 44
84863886 GATTGTTGGG
*
84863896 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
84863940 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * * * *
84863982 ATATGATTTA-GTGTAAGACCCTATTTGGGACAGTGGCATTG-AT
1 ATGTGA-TTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
84864025 ATGTGATAACATGTAAGACCATATCTGG
1 ATGTGATTACATGTAAGACCATGTCTGG
84864053 TATATGGCAT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 3 0.03
43 90 0.94
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:84866172 original size:56 final size:56
Alignment explanation
Indices: 84866086--84866317 Score: 455
Period size: 56 Copynumber: 4.1 Consensus size: 56
84866076 ACAAGGGATG
84866086 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
84866142 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
84866198 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
84866254 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
84866310 ATGGGCAA
1 ATGGGCAA
84866318 TAAACTAATA
Statistics
Matches: 175, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 175 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:84867172 original size:39 final size:40
Alignment explanation
Indices: 84867071--84867255 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
84867061 TCGAATGATG
* * * * *
84867071 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
84867111 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84867151 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84867190 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
84867231 -CTGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84867256 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84867277 original size:79 final size:79
Alignment explanation
Indices: 84867124--84867288 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
84867114 GGACTAAGAT
* * **
84867124 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
84867189 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
84867203 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
84867266 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84867282 CCGAAGG
1 CCGAAGG
84867289 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:84874267 original size:48 final size:49
Alignment explanation
Indices: 84874196--84874292 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
84874186 CTACAGTCTA
84874196 ACAGAACATACTTATTGCCTA-TTTTTTATATTATATATTTTTATTATT
1 ACAGAACATACTTATTGCCTATTTTTTTATATTATATATTTTTATTATT
*
84874244 ACAGAACATACTTATTGCCTATTTTTTTATATTATATATTTTTTTTATT
1 ACAGAACATACTTATTGCCTATTTTTTTATATTATATATTTTTATTATT
84874293 TTTTATTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 21 0.45
49 26 0.55
ACGTcount: A:0.30, C:0.10, G:0.04, T:0.56
Consensus pattern (49 bp):
ACAGAACATACTTATTGCCTATTTTTTTATATTATATATTTTTATTATT
Found at i:84874763 original size:43 final size:44
Alignment explanation
Indices: 84874695--84874867 Score: 159
Period size: 43 Copynumber: 4.1 Consensus size: 44
84874685 CCATATAGTA
* *
84874695 CAATGCCAAC-GTCTCAGAC-GTGGTCTTACACATAATCACATAT
1 CAATGCCAACTGTCCCAGACAG-GGTCTTACACAGAATCACATAT
* *
84874738 CAATGCC-ACTGTCCTAGACAGGGTCTTACAC-GAATCAAATAT
1 CAATGCCAACTGTCCCAGACAGGGTCTTACACAGAATCACATAT
* * * *
84874780 -GATGCCGA-TGTCCCAAACATGGTCTTACAC-GTAATCACATAT
1 CAATGCCAACTGTCCCAGACAGGGTCTTACACAG-AATCACATAT
*
84874822 CGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAGAA-CACATAT
1 CAATGCCAACTGTCCCAGACAG-GGTCTTACAC-AGAATCACATAT
84874865 CAA
1 CAA
84874868 AAATCCTATG
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
41 25 0.23
42 21 0.19
43 58 0.54
44 3 0.03
45 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (44 bp):
CAATGCCAACTGTCCCAGACAGGGTCTTACACAGAATCACATAT
Found at i:84875421 original size:25 final size:29
Alignment explanation
Indices: 84875356--84875422 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
84875346 TATTCATACA
84875356 AGTCCATACATTTCATTTATTTCACATTTT
1 AGTCCATA-ATTTCATTTATTTCACATTTT
* *
84875386 AGTCCCTTAATTT-ATTTTTTTCA-A-TTT
1 AGT-CCATAATTTCATTTATTTCACATTTT
84875413 AGTCC-TAATT
1 AGTCCATAATT
84875423 ATTCAAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 5 0.15
26 2 0.06
27 6 0.18
28 1 0.03
29 9 0.26
30 7 0.21
31 4 0.12
ACGTcount: A:0.25, C:0.18, G:0.04, T:0.52
Consensus pattern (29 bp):
AGTCCATAATTTCATTTATTTCACATTTT
Found at i:84877961 original size:46 final size:46
Alignment explanation
Indices: 84877908--84878038 Score: 165
Period size: 46 Copynumber: 2.8 Consensus size: 46
84877898 TATATATACA
* * * ***
84877908 CATCTCATACATATCTCACATTAGCCATTTTTCTTTACCCCA-TATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCCAGT-TC
* *
84877954 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCCAGTTC
*
84878000 CATCTCATACACATTTCGCATTAACCATTCGGCTTTACC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC
84878039 ACATATATAC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 73 0.99
47 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.08, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCCAGTTC
Found at i:84878093 original size:47 final size:47
Alignment explanation
Indices: 84878024--84878201 Score: 243
Period size: 47 Copynumber: 3.8 Consensus size: 47
84878014 TTCGCATTAA
* * * * *
84878024 CCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGG
** *
84878071 CCATTTTGCCTTATCACATATATGCATGTTCACATTCATTACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
84878118 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
*
84878165 CCATTCGGCCTTATCACACAT-TCGCATGTTCACATTC
1 CCATTCGGCCTTATCACATATAT-GCATGTTCACATTC
84878202 TGGCCACAAT
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 2 0.02
47 115 0.98
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:84878136 original size:22 final size:22
Alignment explanation
Indices: 84878111--84878182 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
84878101 CACATTCATT
84878111 ACATTGGCCATTCGGCCTTATC
1 ACATTGGCCATTCGGCCTTATC
* * *
84878133 ACATATATG-CATGTTC-ACATTCATC
1 ACAT-T-GGCCA--TTCGGCCTT-ATC
84878158 ACATTGGCCATTCGGCCTTATC
1 ACATTGGCCATTCGGCCTTATC
84878180 ACA
1 ACA
84878183 CATTCGCATG
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (22 bp):
ACATTGGCCATTCGGCCTTATC
Found at i:84878275 original size:46 final size:46
Alignment explanation
Indices: 84878223--84878353 Score: 165
Period size: 46 Copynumber: 2.8 Consensus size: 46
84878213 TATATATACA
* * * ***
84878223 CATCTCATACATATCTCACATTAGCCATTTTTCTTTACCCCA-TATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCCAGT-TC
* *
84878269 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCCAGTTC
*
84878315 CATCTCATACACATTTCGCATTAACCATTCGGCTTTACC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC
84878354 ACATATATAC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 73 0.99
47 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.08, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCCAGTTC
Found at i:84878408 original size:47 final size:46
Alignment explanation
Indices: 84878339--84878476 Score: 186
Period size: 47 Copynumber: 2.9 Consensus size: 46
84878329 TTCGCATTAA
* * * *
84878339 CCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCTCATATATACACTT-CACATTCATCACATTGG
* * *
84878386 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTTG
1 CCATTCGGCCTTATCTCATATATACA-CTTCACATTCATCACATTGG
84878433 CCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CCATTCGGCCTTATCTCATATATACAC-TTCACATTCATCACAT
84878477 AAAATCCTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 78 0.98
48 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (46 bp):
CCATTCGGCCTTATCTCATATATACACTTCACATTCATCACATTGG
Found at i:84878467 original size:315 final size:314
Alignment explanation
Indices: 84877883--84878476 Score: 1098
Period size: 315 Copynumber: 1.9 Consensus size: 314
84877873 CGCCGTTTGT
84877883 CATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTTTCTTTACCC
1 CATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTTTCTTTACCC
84877948 CATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTCCATCTCATACACA
66 CATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTCCATCTCATACACA
**
84878013 TTTCGCATTAACCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTTT
131 TTTCGCATTAACCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTCG
* *
84878078 GCCTTATCACATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCACATATATGC
196 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
**
84878143 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATTCGCATGTTCA
261 ACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATTCGCATGTTCA
84878197 CATTCTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTTTCTTTACC
1 CATT-TGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTTTCTTTACC
84878262 CCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTCCATCTCATACAC
65 CCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTCCATCTCATACAC
84878327 ATTTCGCATTAACCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTC
130 ATTTCGCATTAACCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTC
* * *
84878392 GGCCTTATCTCATATATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATA
195 GGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
84878457 CACATTCACATTCATCACAT
260 CACATTCACATTCATCACAT
84878477 AAAATCCTAA
Statistics
Matches: 270, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
314 4 0.01
315 266 0.99
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (314 bp):
CATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTTTCTTTACCC
CATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCAGTTCCATCTCATACACA
TTTCGCATTAACCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTCG
GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATTCGCATGTTCA
Found at i:84884549 original size:45 final size:45
Alignment explanation
Indices: 84884497--84884629 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
84884487 CGATATCATT
* *
84884497 TCACCGGTATTATAGCCTTCTAGGCTCAAAAGCCCGAATAGTATC
1 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
84884542 TCACCGGTATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGTATC
1 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
84884587 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
84884630 CTATACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:84884602 original size:90 final size:87
Alignment explanation
Indices: 84884456--84884629 Score: 224
Period size: 90 Copynumber: 2.0 Consensus size: 87
84884446 CGAATTCATC
* * * * * *
84884456 CACCGGTATTTCGCCAGCTAGGATTGAAGCCCGATATCATTTCACCGGTATTATAGCCTTCTAGG
1 CACCGGTATTTAGCCAGCTAGGATTAAAGCCCGATATCATCTCACCGGCATCATAGCCTGCTAGG
84884521 CTCAAAAGCCCGAATAGTATCT
66 CTCAAAAGCCCGAATAGTATCT
* *
84884543 CACCGGTATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGT-ATCTCACCGGCATCATAGCCTGC
1 CACCGGTATT-TAGCCAGCTAGGATTAAA-GCCCG-ATA-TCATCTCACCGGCATCATAGCCTGC
*
84884607 TAGGCTCAAAGGCCCGAATAGTA
62 TAGGCTCAAAAGCCCGAATAGTA
84884630 CTATACAATA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
87 10 0.14
88 14 0.19
89 5 0.07
90 44 0.59
91 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (87 bp):
CACCGGTATTTAGCCAGCTAGGATTAAAGCCCGATATCATCTCACCGGCATCATAGCCTGCTAGG
CTCAAAAGCCCGAATAGTATCT
Found at i:84885274 original size:261 final size:261
Alignment explanation
Indices: 84884810--84885333 Score: 1003
Period size: 261 Copynumber: 2.0 Consensus size: 261
84884800 TTATCATTTG
84884810 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCAGCCATATACATACATTA
1 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCAGCCATATACATACATTA
*
84884875 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
66 CAAGTAATACTTAATTCTAATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
84884940 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
131 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
*
84885005 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAATTTATTAAAGTCCCAT
196 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
84885070 C
261 C
*
84885071 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
1 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCAGCCATATACATACATTA
*
84885136 CAAGTAATACTTAATTCTAATAATATGTCATGTCATTATTGAATATTATTTATGTTTAACTATTT
66 CAAGTAATACTTAATTCTAATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
*
84885201 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCT
131 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
84885266 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
196 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
84885331 C
261 C
84885332 AT
1 AT
84885334 GCTAGCTTAT
Statistics
Matches: 258, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
261 258 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (261 bp):
ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCAGCCATATACATACATTA
CAAGTAATACTTAATTCTAATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
C
Found at i:84888422 original size:20 final size:20
Alignment explanation
Indices: 84888393--84888438 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
84888383 AAAATCATCC
*
84888393 CTGAATTTCTTCAATGCTGA
1 CTGAAATTCTTCAATGCTGA
84888413 CTGAAATTCTTCAATGCTGA
1 CTGAAATTCTTCAATGCTGA
84888433 CTGAAA
1 CTGAAA
84888439 CATCTTACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (20 bp):
CTGAAATTCTTCAATGCTGA
Found at i:84891017 original size:30 final size:30
Alignment explanation
Indices: 84890970--84891029 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84890960 TTCTCGAGCC
84890970 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
84891000 TAGGGGTAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
84891030 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:84891766 original size:49 final size:50
Alignment explanation
Indices: 84891676--84891920 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
84891666 AGCTATTGTG
* * *
84891676 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
84891726 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * **
84891776 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTAC-TGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
84891825 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
84891875 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
84891921 GCTTCGGCTA
Statistics
Matches: 168, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
49 118 0.70
50 20 0.12
51 30 0.18
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:84891852 original size:100 final size:98
Alignment explanation
Indices: 84891679--84891920 Score: 324
Period size: 100 Copynumber: 2.4 Consensus size: 98
84891669 TATTGTGAGG
* *
84891679 TCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
84891744 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* ** *
84891779 TCACGTGTGTAGTACTAAGTGCAGGCTACTAC-TGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
84891843 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * * *
84891877 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
84891921 GCTTCGGCTA
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
98 30 0.24
99 21 0.17
100 73 0.59
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:84894678 original size:16 final size:15
Alignment explanation
Indices: 84894640--84894678 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
84894630 TTGATTCTCG
*
84894640 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
84894655 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
84894670 TATTCTTGG
1 TA-TCTTGG
84894679 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:84896784 original size:30 final size:29
Alignment explanation
Indices: 84896726--84896784 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
84896716 TTCTCGAGCC
*
84896726 TAGGGGCAAAAGTGTAATTATGCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAGTT
*
84896755 TAGGGGCAAAA-TGGTAATTTTTCCAAAGTT
1 TAGGGGCAAAAGT-GTAA-TTATCCAAAGTT
84896785 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 15 0.58
30 10 0.38
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAATTATCCAAAGTT
Found at i:84897608 original size:50 final size:49
Alignment explanation
Indices: 84897432--84897663 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
84897422 GCTATTGTGA
* *
84897432 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * * * *** *
84897481 GGACGCATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCTGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TT
* * **
84897531 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
*
84897581 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * *
84897631 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
84897664 TGCATACCAG
Statistics
Matches: 152, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 69 0.45
50 48 0.32
51 35 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:84901752 original size:47 final size:47
Alignment explanation
Indices: 84901683--84901830 Score: 260
Period size: 47 Copynumber: 3.1 Consensus size: 47
84901673 TATGAAATGA
84901683 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
84901730 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * *
84901777 TGATAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGCATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
84901824 TGATAAG
1 TGATAAG
84901831 TCCCGAAGGG
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:84902106 original size:183 final size:183
Alignment explanation
Indices: 84901798--84902145 Score: 696
Period size: 183 Copynumber: 1.9 Consensus size: 183
84901788 AATGGCCGAT
84901798 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
1 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
84901863 GGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGTCCGTAAGCTTCGTGC
66 GGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGTCCGTAAGCTTCGTGC
84901928 TCGTACTATATCCGAGCTCTAAAGACCCGATGACTCGGGGCCGAGTGGCCAAC
131 TCGTACTATATCCGAGCTCTAAAGACCCGATGACTCGGGGCCGAGTGGCCAAC
84901981 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
1 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
84902046 GGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGTCCGTAAGCTTCGTGC
66 GGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGTCCGTAAGCTTCGTGC
84902111 TCGTACTATATCCGAGCTCTAAAGACCCGATGACT
131 TCGTACTATATCCGAGCTCTAAAGACCCGATGACT
84902146 ACGTGTGGGA
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 165 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (183 bp):
GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
GGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGTCCGTAAGCTTCGTGC
TCGTACTATATCCGAGCTCTAAAGACCCGATGACTCGGGGCCGAGTGGCCAAC
Found at i:84902207 original size:38 final size:37
Alignment explanation
Indices: 84902132--84902211 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 37
84902122 CCGAGCTCTA
* *
84902132 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGAATTATGTCCGGGT
* *
84902169 AAGACCCGATAACTTCAGTGT-GGAGATTATGTCTGGGT
1 AAGACCCGATAACTAC-GTGTGGGA-ATTATGTCCGGGT
84902207 AAGAC
1 AAGAC
84902212 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 17 0.46
38 20 0.54
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGTCCGGGT
Found at i:84905397 original size:27 final size:27
Alignment explanation
Indices: 84905169--84905404 Score: 183
Period size: 27 Copynumber: 8.7 Consensus size: 27
84905159 TTCATCCTAC
* * * *
84905169 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* ** ** *
84905196 AAGGGTATCTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
84905223 AAAGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
**
84905251 CAAGGGTATTTCT-GTAATTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* *
84905278 CAGGGGTATTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTTTACAAACT
* * *
84905306 GAGGGTATTTCGGTAATTTCACAAAC-
1 AAGGGTATTTTGGTAATTTTACAAACT
*
84905332 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
84905360 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
84905387 AAGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
84905405 CTATCCTACA
Statistics
Matches: 168, Mismatches: 34, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 135 0.80
28 16 0.10
29 14 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:84905418 original size:54 final size:55
Alignment explanation
Indices: 84905282--84905438 Score: 178
Period size: 54 Copynumber: 2.9 Consensus size: 55
84905272 GTAAATCAGG
* * * *
84905282 GGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTCTACAAACTAGGGGGTATTTCGGTAATTTCACAAACAAGT
* * *
84905336 GGTATTTTGGTAATTTTACAAACTA-GGGGTATTTTGGTAATTTTACAAACTAAG-
1 GGTATTTTGGTAATTCTACAAACTAGGGGGTATTTCGGTAATTTCACAAAC-AAGT
** *
84905390 GGTATTTTGGTAATTCTATCCTAC-AGGGGGTATTTCAGTAATTTCACAA
1 GGTATTTTGGTAATTCTA-CAAACTAGGGGGTATTTCGGTAATTTCACAA
84905439 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
54 62 0.70
55 26 0.30
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (55 bp):
GGTATTTTGGTAATTCTACAAACTAGGGGGTATTTCGGTAATTTCACAAACAAGT
Found at i:84905446 original size:54 final size:53
Alignment explanation
Indices: 84905254--84905447 Score: 176
Period size: 54 Copynumber: 3.6 Consensus size: 53
84905244 AGAAAGTCAA
* *** * * *
84905254 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTCGGTAATTTCACAAA-CAAGGGTATTTTGGTAATTCTACAAACTAG
* *
84905307 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG
1 -GGGTATTTCGGTAATTTCACAAACAAG-GGTATTTTGGTAATTCTACAAACTAG
* * **
84905362 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTATCCTAC-AGG
1 GGGTATTTCGGTAATTTCACAAAC-AAGGGTATTTTGGTAATTCTA-CAAACTA-G
* * *
84905417 GGGTATTTCAGTAATTTCACAATCGAGGGTA
1 GGGTATTTCGGTAATTTCACAAACAAGGGTA
84905448 AAACGATAAT
Statistics
Matches: 117, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
53 2 0.02
54 87 0.74
55 28 0.24
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTCACAAACAAGGGTATTTTGGTAATTCTACAAACTAG
Found at i:84905447 original size:81 final size:81
Alignment explanation
Indices: 84905279--84905445 Score: 194
Period size: 81 Copynumber: 2.0 Consensus size: 81
84905269 TTTGTAAATC
* * * *
84905279 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTC
* * *
84905344 GGTAATTTTACAAACT
66 AGTAATTTCACAAACG
* **
84905360 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAA-TTCTATCCTA-CAGGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTC-A-CAAACCA-GGGGTAT
*
84905423 TTCAGTAATTTCACAATCG
63 TTCAGTAATTTCACAAACG
84905442 AGGG
1 AGGG
84905446 TAAAACGATA
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
80 3 0.04
81 43 0.60
82 26 0.36
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTC
AGTAATTTCACAAACG
Found at i:84905457 original size:26 final size:25
Alignment explanation
Indices: 84905428--84905512 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
84905418 GGTATTTCAG
*
84905428 TAATTTCACAATCGAGGGTAAAACGA
1 TAATTTCA-AATCGAGGGTAAAATGA
* *
84905454 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAA-TTT-CAAATCGAGGGTAAAATGA
* *
84905481 TAATTCTATAAATTGAGGGTAAAATGA
1 TAATT-T-CAAATCGAGGGTAAAATGA
84905508 TAATT
1 TAATT
84905513 CTGTAAATCG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.10
27 44 0.88
28 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (25 bp):
TAATTTCAAATCGAGGGTAAAATGA
Found at i:84905473 original size:27 final size:27
Alignment explanation
Indices: 84905437--84905525 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
84905427 GTAATTTCAC
* *
84905437 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
* *
84905464 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGATAATTCTGTA
*
84905491 AATTGAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
84905518 AATCGAGG
1 AATCGAGG
84905526 TTACTTTAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGATAATTCTGTA
Found at i:84905553 original size:54 final size:53
Alignment explanation
Indices: 84905426--84905553 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
84905416 GGGGTATTTC
* *
84905426 AGTAATTTCACAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTTTACAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
* * * * ***
84905479 GGTAATTCTATA-AATTGAGGGTAAAATGATAATTCTGTAAATCGAGGTTACTTT
1 AGTAATT-T-TACAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
84905533 AGTAATTTTACAAGTCGAGGG
1 AGTAATTTTACAA-TCGAGGG
84905554 CATTTCAATA
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 48 0.80
55 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (53 bp):
AGTAATTTTACAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
Found at i:84909541 original size:128 final size:128
Alignment explanation
Indices: 84909296--84909801 Score: 562
Period size: 128 Copynumber: 3.9 Consensus size: 128
84909286 ATCGGAATCA
*** * * * * *
84909296 CATATCGATGCCAACGTATTAAACATGGTCTTACATGTAATTACATATCGATGCCAATGTCCTAG
1 CATATCGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAG
* * * *
84909361 ACGTGTTCTTACACG-AGAACACATATCGATGCCACTGTCCTAGA-TTGGGTCTTACACGTAATT
66 ACATGGTCTTACACGTA-ATCACATATCGATGCCACTGTCCTAGACGT-GGTCTTACACGTAATT
*
84909424 CATATCGATGCCAACGTCCCAAACGTGGTATTACACGTAATCACATATCGATGCCACTGTCCCAG
1 CATATCGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAG
* * * * * *
84909489 ACAAGGTCTTACACGTAATTACATATCAATGCCAAC-GTCCCAGACGTCGTCTTACACGTAATCA
66 ACATGGTCTTACACGTAATCACATATCGATGCC-ACTGTCCTAGACGTGGTCTTACACGTAAT-T
* * * *
84909553 CATAAT-GATGCCAACGTCCCAAATGTGGTGTTACACGTAATCACAT-TCGATGCCATTGTTCCA
1 CAT-ATCGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATATCGATGCCACTGTCCCA
* * * *
84909616 GATAGGGTCTTACACGTAATCACATATCGATGCCACTGTCCAAGACAG-GGTCTTATACGTAA-T
65 GACATGGTCTTACACGTAATCACATATCGATGCCACTGTCCTAGAC-GTGGTCTTACACGTAATT
* * * *
84909679 CACTTATCGATGCCAACGTCTCAGACGTGGTCTTACACGTAATCACATATCGAAGCCGAC-GTCG
1 CA--TATCGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATATCGATGCC-ACTGTCC
* *
84909743 CAGACATGGTCTTACACGTAATCACATGTCGATGCCAAC-GTCCTTGACGTGGTCTTACA
63 CAGACATGGTCTTACACGTAATCACATATCGATGCC-ACTGTCCTAGACGTGGTCTTACA
84909802 TGAGAACACA
Statistics
Matches: 319, Mismatches: 45, Indels: 27
0.82 0.12 0.07
Matches are distributed among these distances:
126 2 0.01
127 4 0.01
128 205 0.64
129 103 0.32
130 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (128 bp):
CATATCGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAG
ACATGGTCTTACACGTAATCACATATCGATGCCACTGTCCTAGACGTGGTCTTACACGTAATT
Found at i:84909556 original size:86 final size:86
Alignment explanation
Indices: 84909291--84909824 Score: 566
Period size: 86 Copynumber: 6.2 Consensus size: 86
84909281 CACATATCGG
*** * * * *
84909291 AATCACATATCGATGCCAAC-GTATTAAACATGGTCTTACATGTAATTACATATCGATGCCAATG
1 AATCACATATCGATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACG
* *
84909355 TCCTAGACGTGTTCTTACACG-
65 TCCCAGACGTGGTCTTACACGT
* * * *
84909376 AGAACACATATCGATGCCACTGTCCTAGA-TTGGGTCTTACACGTAAT-TCATATCGATGCCAAC
1 A-ATCACATATCGATGCCACTGTCCCAGACAT-GGTCTTACACGTAATCACATATCGATGCCAAC
* *
84909439 GTCCCAAACGTGGTATTACACGT
64 GTCCCAGACGTGGTCTTACACGT
* * *
84909462 AATCACATATCGATGCCACTGTCCCAGACAAGGTCTTACACGTAATTACATATCAATGCCAACGT
1 AATCACATATCGATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGT
*
84909527 CCCAGACGTCGTCTTACACGT
66 CCCAGACGTGGTCTTACACGT
* ** * **
84909548 AATCACATAAT-GATGCCAAC-GTCCCAAATGTGGTGTTACACGTAATCACAT-TCGATGCCATT
1 AATCACAT-ATCGATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAAC
* *
84909610 GTTCCAGATAG-GGTCTTACACGT
64 GTCCCAGA-CGTGGTCTTACACGT
* * * *
84909633 AATCACATATCGATGCCACTGTCCAAGACAGGGTCTTATACGTAATCACTTATCGATGCCAACGT
1 AATCACATATCGATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGT
*
84909698 CTCAGACGTGGTCTTACACGT
66 CCCAGACGTGGTCTTACACGT
* * *
84909719 AATCACATATCGAAGCCGAC-GTCGCAGACATGGTCTTACACGTAATCACATGTCGATGCCAACG
1 AATCACATATCGATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACG
** *
84909783 TCCTTGACGTGGTCTTACATG-
65 TCCCAGACGTGGTCTTACACGT
* *
84909804 AGAACACATATTGATGCCACT
1 A-ATCACATATCGATGCCACT
84909825 AAAAGATGGA
Statistics
Matches: 373, Mismatches: 60, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
84 4 0.01
85 143 0.38
86 220 0.59
87 6 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (86 bp):
AATCACATATCGATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGT
CCCAGACGTGGTCTTACACGT
Found at i:84909589 original size:171 final size:168
Alignment explanation
Indices: 84909291--84909785 Score: 545
Period size: 171 Copynumber: 2.9 Consensus size: 168
84909281 CACATATCGG
** * * *
84909291 AATCACATATCGATGCCAAC-GTATTAA-ACATGGTCTTACATGTAATTACATATCGATGCCAAT
1 AATCACATATCGATGCC-ACTGT-CCAAGACAAGGTCTTACACGTAATTACATATCGATGCCAAC
* * *
84909354 GTCCTAGACGTGTTCTTACACG-AGAACACATATCGATGCCACTGTCCTAGATTGGGTCTTACAC
64 GTCCCAGACGTG-TCTTACACGTA-ATCACATATCGATGCCAC-GTCCCAGATT-GGTCTTACAC
84909418 GTAATTCATATCGATGCCAACGTCCCA-A-ACGTGGTATTACACGT
125 GTAATTCATATCGATGCCAACGTCCCAGATA-G-GGTATTACACGT
* *
84909462 AATCACATATCGATGCCACTGTCCCAGACAAGGTCTTACACGTAATTACATATCAATGCCAACGT
1 AATCACATATCGATGCCACTGTCCAAGACAAGGTCTTACACGTAATTACATATCGATGCCAACGT
* *
84909527 CCCAGACGTCGTCTTACACGTAATCACATAAT-GATGCCAACGTCCCAAATGTGGTGTTACACGT
66 CCCAGACGT-GTCTTACACGTAATCACAT-ATCGATGCC-ACGTCCCAGAT-TGGTCTTACACGT
* ** * *
84909591 AA-TCACATTCGATGCCATTGTTCCAGATAGGGTCTTACACGT
127 AATTCATA-TCGATGCCAACGTCCCAGATAGGGTATTACACGT
* * * *
84909633 AATCACATATCGATGCCACTGTCCAAGACAGGGTCTTATACGTAATCACTTATCGATGCCAACGT
1 AATCACATATCGATGCCACTGTCCAAGACAAGGTCTTACACGTAATTACATATCGATGCCAACGT
* * * *
84909698 CTCAGACGTGGTCTTACACGTAATCACATATCGAAGCCGACGTCGCAGACATGGTCTTACACGTA
66 CCCAGACGT-GTCTTACACGTAATCACATATCGATGCC-ACGTCCCAGA-TTGGTCTTACACGTA
* *
84909763 ATCACATGTCGATGCCAACGTCC
128 AT-TCATATCGATGCCAACGTCC
84909786 TTGACGTGGT
Statistics
Matches: 273, Mismatches: 37, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
170 9 0.03
171 240 0.88
172 21 0.08
173 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (168 bp):
AATCACATATCGATGCCACTGTCCAAGACAAGGTCTTACACGTAATTACATATCGATGCCAACGT
CCCAGACGTGTCTTACACGTAATCACATATCGATGCCACGTCCCAGATTGGTCTTACACGTAATT
CATATCGATGCCAACGTCCCAGATAGGGTATTACACGT
Found at i:84909822 original size:43 final size:43
Alignment explanation
Indices: 84909291--84909801 Score: 508
Period size: 43 Copynumber: 11.9 Consensus size: 43
84909281 CACATATCGG
** * * *
84909291 AATCACATATCGATGCCAACGTATTAAACATGGTCTTACATGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
* * *
84909334 AATTACATATCGATGCCAATGTCCTAGACGTGTTCTTACACG-
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
* *
84909376 AGAACACATATCGATGCC-ACTGTCCTAGA-TTGGGTCTTACACGT
1 A-ATCACATATCGATGCCAAC-GTCCTAGACGT-GGTCTTACACGT
* * * *
84909420 AAT-TCATATCGATGCCAACGTCCCAAACGTGGTATTACACGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
* **
84909462 AATCACATATCGATGCC-ACTGTCCCAGACAAGGTCTTACACGT
1 AATCACATATCGATGCCAAC-GTCCTAGACGTGGTCTTACACGT
* * * *
84909505 AATTACATATCAATGCCAACGTCCCAGACGTCGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
* * * *
84909548 AATCACATAAT-GATGCCAACGTCCCAAATGTGGTGTTACACGT
1 AATCACAT-ATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
** *
84909591 AATCACAT-TCGATGCCATTGTTCC-AGATAG-GGTCTTACACGT
1 AATCACATATCGATGCCAACG-TCCTAGA-CGTGGTCTTACACGT
* *
84909633 AATCACATATCGATGCC-ACTGTCCAAGACAG-GGTCTTATACGT
1 AATCACATATCGATGCCAAC-GTCCTAGAC-GTGGTCTTACACGT
*
84909676 AATCACTTATCGATGCCAACGT-CTCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCT-AGACGTGGTCTTACACGT
* * *
84909719 AATCACATATCGAAGCCGACGTCGC-AGACATGGTCTTACACGT
1 AATCACATATCGATGCCAACGTC-CTAGACGTGGTCTTACACGT
* *
84909762 AATCACATGTCGATGCCAACGTCCTTGACGTGGTCTTACA
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACA
84909802 TGAGAACACA
Statistics
Matches: 389, Mismatches: 56, Indels: 46
0.79 0.11 0.09
Matches are distributed among these distances:
41 1 0.00
42 72 0.19
43 308 0.79
44 7 0.02
45 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
Found at i:84914146 original size:18 final size:18
Alignment explanation
Indices: 84914123--84914158 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
84914113 CTAAAACTCA
*
84914123 CCCAAAGCCGAATTCTTT
1 CCCAAAACCGAATTCTTT
*
84914141 CCCAAAACCGATTTCTTT
1 CCCAAAACCGAATTCTTT
84914159 GAGTACCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.33, G:0.08, T:0.31
Consensus pattern (18 bp):
CCCAAAACCGAATTCTTT
Found at i:84920090 original size:40 final size:40
Alignment explanation
Indices: 84920035--84920221 Score: 329
Period size: 40 Copynumber: 4.7 Consensus size: 40
84920025 CAATTGAGGA
84920035 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
84920075 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
84920115 TTATATTCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
84920155 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
84920195 TTATATTCGGGCTAAATCCCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
84920222 ATTGGGTTGG
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:84927845 original size:40 final size:40
Alignment explanation
Indices: 84927790--84927936 Score: 231
Period size: 40 Copynumber: 3.7 Consensus size: 40
84927780 CAATTGAGGA
* *
84927790 TTATATCCAGGTTAAGTCCTGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
84927830 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
84927870 TTATTTCTGGGTTAAGTCTCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
84927910 TTATATCCGGGCTAAATCCCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
84927937 ACTGGGTTGG
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:84936801 original size:19 final size:20
Alignment explanation
Indices: 84936777--84936814 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84936767 GGTACCACCA
84936777 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
84936796 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
84936815 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:84937159 original size:93 final size:93
Alignment explanation
Indices: 84937044--84937214 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
84937034 GCCCCTAAGT
* * *
84937044 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
84937108 ACGAGTTTGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
84937137 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
84937202 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84937215 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84937208 original size:46 final size:47
Alignment explanation
Indices: 84937039--84937205 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 47
84937029 AACCCGCCCC
* * * *
84937039 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCAGACATTTGCATCCA
* * * * * *
84937085 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTT-CA-GAC-ATTTGCATCCA
* *
84937133 TCA-CGAACTCGGACTCAACTCAACGAG-TTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCAGACATTTGCATCCA
84937178 TAAGTGAACTCGGACTCAACTCAACGAG
1 TAAGTGAACTCGGACTCAACTCAACGAG
84937206 TTCGGATGCT
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 54 0.55
47 23 0.23
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTTCAGACATTTGCATCCA
Found at i:84937230 original size:46 final size:46
Alignment explanation
Indices: 84937038--84937223 Score: 127
Period size: 46 Copynumber: 4.0 Consensus size: 46
84937028 TAACCCGCCC
* * * * *
84937038 CTAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAG-TTCGG-ATGCTCAACCAT
* *
84937085 -TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTA-CAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * *
84937132 CTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACAT-TTGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCT-CAACCAT
84937178 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
84937223 C
1 C
84937224 CTAGTGACAT
Statistics
Matches: 108, Mismatches: 16, Indels: 31
0.70 0.10 0.20
Matches are distributed among these distances:
43 1 0.01
44 10 0.09
45 8 0.07
46 55 0.51
47 27 0.25
48 3 0.03
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:84937669 original size:30 final size:30
Alignment explanation
Indices: 84937635--84937694 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
84937625 ATTTAATACG
84937635 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
84937665 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
84937695 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:84942241 original size:33 final size:33
Alignment explanation
Indices: 84942204--84942269 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
84942194 TCTCGAGTTC
*
84942204 CCTACACTGGCTGCAGAAGTATTCTGAGATTTA
1 CCTACACTGGCTACAGAAGTATTCTGAGATTTA
84942237 CCTACACTGGCTACAGAAGTATTCTGAGATTTA
1 CCTACACTGGCTACAGAAGTATTCTGAGATTTA
84942270 GGACCCACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (33 bp):
CCTACACTGGCTACAGAAGTATTCTGAGATTTA
Found at i:84944427 original size:19 final size:20
Alignment explanation
Indices: 84944403--84944440 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84944393 GGTACCACCA
84944403 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
84944422 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
84944441 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:84945295 original size:30 final size:30
Alignment explanation
Indices: 84945261--84945320 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
84945251 ATTTAATATG
84945261 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
84945291 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
84945321 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:84947250 original size:27 final size:27
Alignment explanation
Indices: 84947220--84947302 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
84947210 ATCTCATATC
* *
84947220 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
* *
84947247 TGTAGGGTAGAATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
**
84947274 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
84947301 TG
1 TG
84947303 GTTTATAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:84947314 original size:27 final size:27
Alignment explanation
Indices: 84947284--84947504 Score: 194
Period size: 27 Copynumber: 8.2 Consensus size: 27
84947274 TGTAGGGTAG
* *
84947284 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
84947311 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
84947338 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
84947365 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
** * *
84947392 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
84947419 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * ** *
84947446 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCAAAATACCCTTGATTTGTAA
*** * *
84947473 AATTACCATTTTACCCTTGATTTATAG
1 AATTACCAAAATACCCTTGATTTGTAA
84947500 AATTA
1 AATTA
84947505 TTATTTTACC
Statistics
Matches: 168, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 162 0.96
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:84947315 original size:54 final size:54
Alignment explanation
Indices: 84947265--84947379 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
84947255 AGAATTACTG
* * * *
84947265 AAATGCCCCT-GTAGGGTAGAATTACCAAAATACCCTTGGTTTATAAAATTACCA
1 AAATACCCCTGGT-GGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
** *
84947319 AAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTGGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
84947373 AAATACC
1 AAATACC
84947380 TCTGATTTGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 51 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (54 bp):
AAATACCCCTGGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
Found at i:84947510 original size:27 final size:27
Alignment explanation
Indices: 84947457--84947865 Score: 489
Period size: 27 Copynumber: 15.2 Consensus size: 27
84947447 ATTACCAAAG
*
84947457 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
84947484 TACCCTTGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
84947511 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
84947538 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
84947565 TACCCTAGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * **
84947592 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
84947619 TACCTTCGATTTACAGAATTACT-GTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
84947645 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
84947672 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* **
84947699 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
84947726 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
84947753 TATCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
84947780 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
84947807 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
84947834 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
84947861 TACCC
1 TACCC
84947866 CTAGGGTGTT
Statistics
Matches: 325, Mismatches: 54, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.07
27 302 0.93
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:84947858 original size:81 final size:81
Alignment explanation
Indices: 84947430--84947865 Score: 550
Period size: 81 Copynumber: 5.4 Consensus size: 81
84947420 ATTACTGAAA
* * *** ** *
84947430 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTTGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* *
84947495 TATAGAATTATTATTT
66 TACAAAATTATTATTT
* * *
84947511 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTAGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
84947576 TACAAAATTATCATTT
66 TACAAAATTATTATTT
* * * *
84947592 TACCCTTGATTTATAGAATTACCGTTTTACCTTCGATTTACAGAATTACTG-TTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
**
84947656 TACAAAATTACCATTT
66 TACAAAATTATTATTT
* * * ** * *
84947672 TACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* *
84947737 TATAAAATTACTATTT
66 TACAAAATTATTATTT
* * * *
84947753 TATCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* *
84947818 TACAGAATTATTGTTT
66 TACAAAATTATTATTT
84947834 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACCATTTTACCC
84947866 CTAGGGTGTT
Statistics
Matches: 311, Mismatches: 43, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
80 73 0.23
81 238 0.77
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTATTATTT
Found at i:84948408 original size:6 final size:6
Alignment explanation
Indices: 84948369--84948512 Score: 55
Period size: 6 Copynumber: 23.3 Consensus size: 6
84948359 TTGCATTCGC
* * *
84948369 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
84948418 -TCACCTA ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG
1 AT--TCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
84948469 ATCCTG ATCCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
84948513 AATGTTTCTT
Statistics
Matches: 104, Mismatches: 20, Indels: 28
0.68 0.13 0.18
Matches are distributed among these distances:
5 6 0.06
6 83 0.80
7 11 0.11
8 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:84948428 original size:25 final size:24
Alignment explanation
Indices: 84948400--84948486 Score: 85
Period size: 25 Copynumber: 3.8 Consensus size: 24
84948390 CCTGATACTG
84948400 ATTCTGATTCTAATTCTGTCACCT
1 ATTCTGATTCTAATTCTGTCACCT
84948424 A-----ATTCTAATTCTGTCACCT
1 ATTCTGATTCTAATTCTGTCACCT
*
84948443 AATTCTGATTCTGATTCTGTCACCT
1 -ATTCTGATTCTAATTCTGTCACCT
* * *
84948468 GATCCTGATCCTGATTCTG
1 -ATTCTGATTCTAATTCTG
84948487 ATTCTCATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
19 18 0.34
20 1 0.02
24 1 0.02
25 33 0.62
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (24 bp):
ATTCTGATTCTAATTCTGTCACCT
Found at i:84948435 original size:31 final size:31
Alignment explanation
Indices: 84948369--84948436 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
84948359 TTGCATTCGC
* * * * *
84948369 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTA
*
84948400 ATTCTGATTCTAATTCTGTCACCTAATTCTA
1 ATTCTGATTCTAATTCTGTCACCTAATACTA
84948431 ATTCTG
1 ATTCTG
84948437 TCACCTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTA
Found at i:84948470 original size:19 final size:19
Alignment explanation
Indices: 84948406--84948455 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
84948396 ACTGATTCTG
84948406 ATTCTAATTCTGTCACCTA
1 ATTCTAATTCTGTCACCTA
84948425 ATTCTAATTCTGTCACCTA
1 ATTCTAATTCTGTCACCTA
*
84948444 ATTCTGATTCTG
1 ATTCTAATTCTG
84948456 ATTCTGTCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (19 bp):
ATTCTAATTCTGTCACCTA
Found at i:84950736 original size:13 final size:13
Alignment explanation
Indices: 84950709--84950750 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
84950699 ACTTATTGCC
84950709 TATT-TTTTATAT
1 TATTATTTTATAT
84950721 TATATATTTT-TAT
1 TAT-TATTTTATAT
84950734 TATTATTTTAT-T
1 TATTATTTTATAT
84950746 TATTA
1 TATTA
84950751 ATTGGGACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:84954043 original size:47 final size:47
Alignment explanation
Indices: 84953911--84954043 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 47
84953901 ATAATCTCAC
* * *
84953911 CCATAATGAACTCGAAACGCAACTCAACGAGCTCAGGTG-TTCGCAT
1 CCATAATGAACTCAAAACGCAACTCAACGAGTTCAGATGCTTCGCAT
* * *
84953957 CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCAAAACGCAACTCAACGAGTTCAGATGCTTCGCAT
* *
84954003 CCATAGGTGAACTCAAAACGCAACTCAACGAGTTTAGATGC
1 CCATA-ATGAACTCAAAACGCAACTCAACGAGTTCAGATGC
84954044 CCCATAATTC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
46 42 0.57
47 32 0.43
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (47 bp):
CCATAATGAACTCAAAACGCAACTCAACGAGTTCAGATGCTTCGCAT
Found at i:84956118 original size:14 final size:14
Alignment explanation
Indices: 84956099--84956128 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84956089 TAAAACCACA
84956099 ATTTATATACATTC
1 ATTTATATACATTC
84956113 ATTTATATACATTC
1 ATTTATATACATTC
84956127 AT
1 AT
84956129 ATCATTCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTATATACATTC
Found at i:84956376 original size:43 final size:43
Alignment explanation
Indices: 84956329--84956450 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 43
84956319 TCCCAGATGT
* *
84956329 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACAG
1 GGTCTTACATGTAATCAAATATCGATGCCAATGTCCTAAACAG
* * * * *
84956372 GGTCTTACATGAAATCATATA-CGATGACAATTTCCTAAACAT
1 GGTCTTACATGTAATCAAATATCGATGCCAATGTCCTAAACAG
* *
84956414 GGTCTTACACGTAAATCACAA-ATCGATGCCAACGTCC
1 GGTCTTACATGT-AATCA-AATATCGATGCCAATGTCC
84956451 CAGACGTAGT
Statistics
Matches: 63, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
42 26 0.41
43 25 0.40
44 12 0.19
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCAATGTCCTAAACAG
Found at i:84956418 original size:42 final size:43
Alignment explanation
Indices: 84956328--84956469 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
84956318 ATCCCAGATG
* * * *
84956328 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGAAATCAAATATCGATGACAATGTCCTAAACA
* * *
84956371 GGGTCTTACATGAAATCATATA-CGATGACAATTTCCTAAACA
1 TGGTCTTACATGAAATCAAATATCGATGACAATGTCCTAAACA
* * * * * *
84956413 TGGTCTTACACGTAAATCACAA-ATCGATGCCAACGTCCCAGACG
1 TGGTCTTACATG-AAATCA-AATATCGATGACAATGTCCTAAACA
*
84956457 TAGTCTTACATGA
1 TGGTCTTACATGA
84956470 TAACATATAC
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
42 26 0.33
43 27 0.35
44 25 0.32
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGACAATGTCCTAAACA
Found at i:84959689 original size:14 final size:16
Alignment explanation
Indices: 84959665--84959697 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
84959655 ATTTTCTGTG
84959665 TTTATTGTGTGT-AAA
1 TTTATTGTGTGTGAAA
84959680 TTTA-TGTGTGTGAAA
1 TTTATTGTGTGTGAAA
84959695 TTT
1 TTT
84959698 TCGTAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (16 bp):
TTTATTGTGTGTGAAA
Found at i:84961896 original size:56 final size:56
Alignment explanation
Indices: 84960986--84961865 Score: 1561
Period size: 56 Copynumber: 15.7 Consensus size: 56
84960976 ATGTATATGA
* * * *
84960986 GGCATCAATATATGA-TACCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
1 GGCATCGATATGTGACT-CCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
*
84961042 GGCATGGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961098 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961154 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961210 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961266 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961322 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961378 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961434 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961490 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961546 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
84961602 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
*
84961658 GGCATGGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
* * * *
84961714 GGCATCGATATGTGACTCCGATATATGTTTG-TGAGTAATACCACGTTTTAGACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCT-AGTAAGACCATGTTTTATACGTT
* * * **
84961770 GGTATCGATATGTGACTCCAATATATGTGTG-TAAGCAAGACCACATTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATGTGTGCT-AGTAAGACCATGTTTTATACGTT
84961826 GGCATCGATATGTGACTCCGATATATGTGTG-TGAGTAAGA
1 GGCATCGATATGTGACTCCGATATATGTGTGCT-AGTAAGA
84961866 TCGTGTCTAG
Statistics
Matches: 798, Mismatches: 24, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
55 1 0.00
56 796 1.00
57 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (56 bp):
GGCATCGATATGTGACTCCGATATATGTGTGCTAGTAAGACCATGTTTTATACGTT
Found at i:84967776 original size:27 final size:27
Alignment explanation
Indices: 84967727--84967798 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
84967717 GTCGCCAAAT
* *
84967727 ACAGATATTTTGTGGTAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGGGCCACCAGA
*
84967755 ACAGATATATGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGGGCCACCAGA
84967782 ACAGATAATTTGTGGCA
1 ACAGAT-ATTTGTGGCA
84967799 TATCCACCAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGGGCCACCAGA
Found at i:84967805 original size:28 final size:27
Alignment explanation
Indices: 84967727--84967808 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
84967717 GTCGCCAAAT
* * *
84967727 ACAGATATTTTGTGGTAGTGCCACCAGA
1 ACAGATA-TATGTGGCAGAGCCACCAGA
*
84967755 ACAGATATATGTGGCAGGGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
84967782 ACAGATAATTTGTGGCATATCCACCAG
1 ACAGAT-ATATGTGGCAGAGCCACCAG
84967809 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
27 23 0.50
28 23 0.50
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:84967957 original size:28 final size:28
Alignment explanation
Indices: 84967914--84967978 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
84967904 AAATTAACCT
*
84967914 TAGGGGTATAACGGTAATTTTGCGTACA
1 TAGGGGTATAACGGTAATTTTGCATACA
84967942 TAGGGGTAT-ACTGGTAATTTTGCATACA
1 TAGGGGTATAAC-GGTAATTTTGCATACA
84967970 TAGGGGTAT
1 TAGGGGTAT
84967979 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.28, C:0.09, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAACGGTAATTTTGCATACA
Found at i:84975643 original size:55 final size:56
Alignment explanation
Indices: 84975578--84975692 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
84975568 AGCATGGCTG
* *
84975578 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCACT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
84975634 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
84975689 CCAG
1 CCAG
84975693 GACGCTACCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:84975660 original size:27 final size:27
Alignment explanation
Indices: 84975603--84975692 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
84975593 GTGACAGAGT
*
84975603 CACCAGATACAGATATTTTGTGGCACTGC
1 CACCAGA-ACAGATA-TTTGTGGCACAGC
* **
84975632 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCACAGC
*
84975659 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCACAGC
84975687 CACCAG
1 CACCAG
84975693 GACGCTACCT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCACAGC
Found at i:84975688 original size:28 final size:27
Alignment explanation
Indices: 84975603--84975692 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
84975593 GTGACAGAGT
*
84975603 CACCAGATACAGATATTTTGTGGCACTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
84975632 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
84975659 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
84975687 CACCAG
1 CACCAG
84975693 GACGCTACCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:84975841 original size:28 final size:28
Alignment explanation
Indices: 84975801--84975862 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
84975791 TTAACCCGAT
84975801 GGGTATAACGGTAATTTTGCATACATAG
1 GGGTATAACGGTAATTTTGCATACATAG
*
84975829 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAACGGTAATTTTGCATACATAG
84975857 GGGTAT
1 GGGTAT
84975863 TCTAGTACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
GGGTATAACGGTAATTTTGCATACATAG
Found at i:84977792 original size:43 final size:42
Alignment explanation
Indices: 84977728--84977850 Score: 149
Period size: 42 Copynumber: 2.9 Consensus size: 42
84977718 ACATAAGTTC
84977728 ATACAATGCCAAC-ATCCCAGACATGGTCTTACATGTAACCAA
1 ATACAATGCC-ACTATCCCAGACATGGTCTTACATGTAACCAA
* * * * *
84977770 ATATCAATGCCACTATCTCAGACAGGGTCTTACATGAAATCAT
1 ATA-CAATGCCACTATCCCAGACATGGTCTTACATGTAACCAA
* * *
84977813 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAA
1 ATACAATGCCACTATCCCAGACATGGTCTTACATGTAA
84977851 ATCACAAATT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
ATACAATGCCACTATCCCAGACATGGTCTTACATGTAACCAA
Found at i:84977835 original size:42 final size:42
Alignment explanation
Indices: 84977728--84977854 Score: 155
Period size: 43 Copynumber: 3.0 Consensus size: 42
84977718 ACATAAGTTC
* * *
84977728 ATACAATGCCAACATCCCAGACATGGTCTTACATGTAACCAA
1 ATACAATGCCAATATCCCAGACATGGTCTTACATGAAATCAA
* * * *
84977770 ATATCAATGCCACTATCTCAGACAGGGTCTTACATGAAATCAT
1 ATA-CAATGCCAATATCCCAGACATGGTCTTACATGAAATCAA
* *
84977813 ATACGATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA
1 ATACAATGCCAATATCCCAGACATGGTCTTACATG-AAATCA
84977855 CAAATTGATG
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 30 0.42
43 41 0.58
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.25
Consensus pattern (42 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACATGAAATCAA
Found at i:84984345 original size:40 final size:40
Alignment explanation
Indices: 84984259--84984350 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
84984249 TCTCGGTATC
* *
84984259 GCACACTTAGTGCCTCATATAGCTGAAGCTATTCCAACTC
1 GCACACTTAGTGCCTCATATAGCTGAAGCTATTCAAACTA
* *
84984299 GCACACTTAGTGCCAT-TTGTAGCTGAAGCTATTTCAAAC-A
1 GCACACTTAGTGCC-TCATATAGCTGAAGCTA-TTCAAACTA
*
84984339 GTACACTTAGTG
1 GCACACTTAGTG
84984351 TCAAACATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (40 bp):
GCACACTTAGTGCCTCATATAGCTGAAGCTATTCAAACTA
Found at i:84991525 original size:48 final size:48
Alignment explanation
Indices: 84991468--84991613 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
84991458 TACAGGATAA
**
84991468 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
84991516 ATATATATATGTGGTAAATCCGAATGGTTAATGTGAAGTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84991564 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84991612 AT
1 AT
84991614 GTGTGTATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:84991804 original size:37 final size:37
Alignment explanation
Indices: 84991754--84991844 Score: 148
Period size: 37 Copynumber: 2.5 Consensus size: 37
84991744 GGAAATATAT
84991754 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT-G
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TCG
84991791 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTCG
* *
84991828 TTCGGGTAAGACTCGAT
1 TCCGGGTAAGACCCGAT
84991845 AACAATGCGT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 50 0.98
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTCG
Found at i:84997376 original size:48 final size:48
Alignment explanation
Indices: 84997314--84997459 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
84997304 TACAAGATAA
**
84997314 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
84997362 ATATATATATGTGGTAAATCCGAATGGTTAATGTGAAGTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84997410 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84997458 AT
1 AT
84997460 GTGTGTATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:84997695 original size:37 final size:37
Alignment explanation
Indices: 84997600--84997708 Score: 175
Period size: 36 Copynumber: 3.0 Consensus size: 37
84997590 GGAAATATAT
84997600 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
84997637 -TCCGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
84997673 TTCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
84997709 TCGAGCTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 34 0.52
37 31 0.48
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:85005162 original size:28 final size:28
Alignment explanation
Indices: 85005131--85005225 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
85005121 GGTATCGGTG
85005131 ATGGCACTTAGTGTGTGATACATCCAGA
1 ATGGCACTTAGTGTGTGATACATCCAGA
** * *
85005159 ATGGCACTTAGTGTGCAAAGTA-AT-GAGG
1 ATGGCACTTAGTGTG-TGA-TACATCCAGA
*
85005187 ATGGCACTTAGTGTGTGAAACATCCAGA
1 ATGGCACTTAGTGTGTGATACATCCAGA
* *
85005215 ACGACACTTAG
1 ATGGCACTTAG
85005226 GGTGCAAGGT
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
26 1 0.02
27 3 0.06
28 43 0.83
29 3 0.06
30 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (28 bp):
ATGGCACTTAGTGTGTGATACATCCAGA
Found at i:85005374 original size:32 final size:32
Alignment explanation
Indices: 85005308--85005374 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
85005298 TGAATATGAG
* **
85005308 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAAGATGATACAGGTATCTACAAAA
* * *
85005340 ATTGGTACAATATGGTACAGGTATGTACAAAA
1 ATTGGTACAAGATGATACAGGTATCTACAAAA
85005372 ATT
1 ATT
85005375 CAATTAAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.28
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACAAAA
Found at i:85011599 original size:32 final size:32
Alignment explanation
Indices: 85011563--85011629 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
85011553 TGAGTATGAG
*
85011563 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAAGATGATACAGGTATCTACGGAA
* * *
85011595 ATTGGTACAATATGGTACAGGTATGTACGGAA
1 ATTGGTACAAGATGATACAGGTATCTACGGAA
85011627 ATT
1 ATT
85011630 TAATTGAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.28
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGGAA
Found at i:85017612 original size:40 final size:40
Alignment explanation
Indices: 85017582--85017842 Score: 280
Period size: 40 Copynumber: 6.5 Consensus size: 40
85017572 ATCATGATTA
* * *
85017582 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
85017622 CTCTTTAGGG-TTTAGCACGGATATATCACTAGCACGAATG
1 CTC-TTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
85017662 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
85017702 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
85017742 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * * *
85017783 C-CTTC-GAATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
85017823 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
85017843 CATCATTCGA
Statistics
Matches: 184, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
39 6 0.03
40 154 0.84
41 24 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:85018189 original size:29 final size:29
Alignment explanation
Indices: 85018150--85018228 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
85018140 CTTAATAATC
*
85018150 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
85018180 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
85018209 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
85018229 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:85018271 original size:43 final size:43
Alignment explanation
Indices: 85018210--85018312 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
85018200 TGCATTTCAA
85018210 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85018253 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85018296 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
85018313 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:85022174 original size:79 final size:81
Alignment explanation
Indices: 85022009--85022192 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 81
85021999 TGAATGATGT
* *
85022009 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
85022073 GTGCGAGATACTAATT
66 GTGCGAGATACTAATA
* * * * * **
85022089 CTGGGCTAAG-CTCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
85022151 TGTGCGAGTTACT-ATAA
65 TGTGCGAGATACTAAT-A
*
85022168 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85022193 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.63
80 29 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAATA
Found at i:85022199 original size:40 final size:40
Alignment explanation
Indices: 85022008--85022192 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
85021998 TTGAATGATG
* * * *
85022008 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
85022048 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85022088 TCTGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85022127 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
85022168 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85022193 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85022214 original size:79 final size:79
Alignment explanation
Indices: 85022061--85022225 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
85022051 GGACTAAGAT
* * * * **
85022061 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCTCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
85022126 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
85022140 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
85022203 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
85022219 CCGAAGG
1 CCGAAGG
85022226 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:85023566 original size:218 final size:218
Alignment explanation
Indices: 85023188--85023622 Score: 807
Period size: 218 Copynumber: 2.0 Consensus size: 218
85023178 GGAGTCAAGC
*
85023188 CATATATGTATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGC
1 CATATATGTATAGATTCCTCTATGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGC
85023253 CCTGTACAGGGAAATATCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGG
66 CCTGTACAGGGAAATATCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGG
85023318 GAGAATTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATATGTAGAT
131 GAGAATTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATATGTAGAT
85023383 GGTAATATGAGTCTAGTTTCAAA
196 GGTAATATGAGTCTAGTTTCAAA
*
85023406 CATATATTTATAGATTCCTCTATGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGC
1 CATATATGTATAGATTCCTCTATGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGC
* * *
85023471 TCTGTGCAGGGAGATATCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGG
66 CCTGTACAGGGAAATATCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGG
* *
85023536 GAGACTTTTACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATATGTAGAT
131 GAGAATTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATATGTAGAT
85023601 GGTAATATGAGTCTAGTTTCAA
196 GGTAATATGAGTCTAGTTTCAA
85023623 GGAAAATTTA
Statistics
Matches: 210, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
218 210 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (218 bp):
CATATATGTATAGATTCCTCTATGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGC
CCTGTACAGGGAAATATCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGG
GAGAATTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATATGTAGAT
GGTAATATGAGTCTAGTTTCAAA
Found at i:85024369 original size:29 final size:29
Alignment explanation
Indices: 85024334--85024407 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
85024324 GTTGTGAGAT
* *
85024334 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
85024363 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
85024392 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
85024408 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:85024843 original size:40 final size:40
Alignment explanation
Indices: 85024799--85024995 Score: 313
Period size: 40 Copynumber: 4.9 Consensus size: 40
85024789 GAGTTACTAA
85024799 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
85024839 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
85024879 ATCCGGGCTAAGTCCCGAAAAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
85024919 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
85024959 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
85024996 CATGTATTCG
Statistics
Matches: 144, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:85024857 original size:80 final size:79
Alignment explanation
Indices: 85024758--85024995 Score: 316
Period size: 80 Copynumber: 3.0 Consensus size: 79
85024748 TAAGTGACCA
* * * * *
85024758 TATCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGC
1 TATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGC
85024822 ATTCATGCTAGTGATG
64 ATTCATGCTAGTGATG
* * * *
85024838 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAAAGCA
1 TATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
85024903 TTCATGCTAGTGATG
65 TTCATGCTAGTGATG
* *
85024918 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 TATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* *
85024983 ATCATGCTGGTGA
65 TTCATGCTAGTGA
85024996 CATGTATTCG
Statistics
Matches: 138, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 125 0.91
81 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATG
Found at i:85032155 original size:47 final size:47
Alignment explanation
Indices: 85032101--85032229 Score: 190
Period size: 47 Copynumber: 2.8 Consensus size: 47
85032091 TTTCTTTAAC
* *
85032101 TAACTTATCCGAAAATAATAAGGGCAAATTTAACAACCTTAACTAAG
1 TAACTTATCCGAAAATATTAAGAGCAAATTTAACAACCTTAACTAAG
* *
85032148 TAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAACTAAG
1 TAACTTATCCGAAAATATTAAGAGCAAATTTAACAACCTTAACTAAG
*
85032195 TAACTTATTC-AGAAATATTAAGAGC-AATTTAACAA
1 TAACTTATCCGA-AAATATTAAGAGCAAATTTAACAA
85032230 GCGTTAAATT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 10 0.13
47 65 0.87
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.28
Consensus pattern (47 bp):
TAACTTATCCGAAAATATTAAGAGCAAATTTAACAACCTTAACTAAG
Found at i:85036815 original size:93 final size:93
Alignment explanation
Indices: 85036702--85036873 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85036692 CGCCCATAAG
* *
85036702 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85036767 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85036795 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85036860 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85036874 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85036870 original size:46 final size:46
Alignment explanation
Indices: 85036695--85036870 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85036685 TGTAACCCGC
* * *
85036695 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85036741 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85036791 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85036834 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85036871 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85039229 original size:21 final size:20
Alignment explanation
Indices: 85039201--85039239 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
85039191 TATTAAAAGG
* *
85039201 TTAATATGGTAAATTAGTTA
1 TTAATATGATAAAATAGTTA
85039221 TTAATTATGATAAAATAGT
1 TTAA-TATGATAAAATAGT
85039240 AAAACAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (20 bp):
TTAATATGATAAAATAGTTA
Found at i:85042899 original size:27 final size:27
Alignment explanation
Indices: 85042851--85042912 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
85042841 GCAAACAGTT
* * *
85042851 ATTTTACTCTACAGGGGCATTTCAATA
1 ATTTTACACTACAAGCGCATTTCAATA
* * *
85042878 ATTTTACACTACAAGCGTATTTCAGTC
1 ATTTTACACTACAAGCGCATTTCAATA
85042905 ATTTTACA
1 ATTTTACA
85042913 AACCGGGGTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGCGCATTTCAATA
Found at i:85054566 original size:36 final size:36
Alignment explanation
Indices: 85054525--85054638 Score: 151
Period size: 36 Copynumber: 3.2 Consensus size: 36
85054515 ATAAATGTAT
* * *
85054525 ATATATATATTCACCTTCGGTTATATCAAACCATAC
1 ATATATATATTCACCTTCGATTATACCAAGCCATAC
* *
85054561 ATATATATATTCACTTTCGATTATACCAAGCTATAC
1 ATATATATATTCACCTTCGATTATACCAAGCCATAC
* *
85054597 ATATATA-A-ACACCTTCGATTATGCCAAGCCATAC
1 ATATATATATTCACCTTCGATTATACCAAGCCATAC
85054631 ATATATAT
1 ATATATAT
85054639 TTATGTACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
34 29 0.43
35 1 0.01
36 38 0.56
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (36 bp):
ATATATATATTCACCTTCGATTATACCAAGCCATAC
Done.