Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 259 of 310
Found at i:85435333 original size:39 final size:40
Alignment explanation
Indices: 85435238--85435499 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
85435228 TTGAATGATG
*
85435238 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
85435276 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
85435317 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
85435356 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
85435395 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
85435434 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
85435473 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
85435500 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:85451929 original size:40 final size:40
Alignment explanation
Indices: 85451874--85452097 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
85451864 TATTCGGATG
85451874 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
85451914 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
85451957 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
85451997 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
85452037 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
85452077 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
85452098 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:85452017 original size:83 final size:80
Alignment explanation
Indices: 85451878--85452097 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
85451868 CGGATGATAT
* **
85451878 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
85451943 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
85451961 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
85452026 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
85452041 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
85452098 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:85456443 original size:13 final size:13
Alignment explanation
Indices: 85456425--85456461 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
85456415 CTAAGTTATA
85456425 GCAGGCACACGGT
1 GCAGGCACACGGT
85456438 GCAGGCACACGGT
1 GCAGGCACACGGT
* *
85456451 CCAGTCACACG
1 GCAGGCACACG
85456462 CCCGTGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.24, C:0.35, G:0.32, T:0.08
Consensus pattern (13 bp):
GCAGGCACACGGT
Found at i:85458861 original size:43 final size:43
Alignment explanation
Indices: 85458808--85458931 Score: 194
Period size: 43 Copynumber: 2.9 Consensus size: 43
85458798 TTTATCGAGA
*
85458808 TGTGAATACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
*
85458851 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * *
85458894 TGTAATTACGTGTAAGACCGTGTCTGGGATATTGGCAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
85458932 CGTTATATGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:85458953 original size:43 final size:41
Alignment explanation
Indices: 85458818--85458967 Score: 158
Period size: 43 Copynumber: 3.5 Consensus size: 41
85458808 TGTGAATACA
*
85458818 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTA-T-TGATTACG
*
85458861 TGTAAGACCATGTCTGAGACATTGGCATTGTATTGTAATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTG--ATTACG
* * * *
85458904 TGTAAGACCGTGTCTGGGATATTGGCATCGTTATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATTG-TAT-TGATTACG
* *
85458947 TATAAGACTC-TGTCTGAGACA
1 TGTAAGAC-CATGTCTGGGACA
85458968 GAGGCATCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 83 0.90
44 4 0.04
45 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGATTACG
Found at i:85458994 original size:86 final size:85
Alignment explanation
Indices: 85458807--85459000 Score: 196
Period size: 86 Copynumber: 2.3 Consensus size: 85
85458797 ATTTATCGAG
* * *
85458807 ATGTGA-ATACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACATGTAAGACCA
1 ATGTGATA-ACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTACATATAAGACCA
** **
85458871 TGTCTGAGACATTGGCATTGT
65 TGTCTGAGACAGAGGCATAAT
* * * * * * *
85458892 ATTGTAATTACGTGTAAGACCGTGTCTGGGATATTGGCATCGT-TATATGATTTCGTATAAGACT
1 A-TGTGATAACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TATGATTACATATAAGAC-
85458956 C-TGTCTGAGACAGAGGCATCAAT
63 CATGTCTGAGACAGAGGCAT-AAT
85458979 ATGTGATAACATGTAAGACCAT
1 ATGTGATAACATGTAAGACCAT
85459001 ATTCGGGATA
Statistics
Matches: 86, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
85 2 0.02
86 81 0.94
87 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (85 bp):
ATGTGATAACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTACATATAAGACCAT
GTCTGAGACAGAGGCATAAT
Found at i:85462803 original size:16 final size:17
Alignment explanation
Indices: 85462769--85462819 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
85462759 AATCTTACTA
*
85462769 TATTATTAATAAATTTT
1 TATTATTAATAAATATT
*
85462786 TATTTTTAA-AAATATT
1 TATTATTAATAAATATT
**
85462802 TAAAATTAATAAAATATT
1 TATTATTAAT-AAATATT
85462820 ATGATTTTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 12 0.44
17 8 0.30
18 7 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATTAATAAATATT
Found at i:85465599 original size:7 final size:8
Alignment explanation
Indices: 85465582--85465609 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
85465572 TATATGTATC
85465582 TTTTTCTT
1 TTTTTCTT
85465590 TTTTTCTT
1 TTTTTCTT
85465598 TTTTTCTT
1 TTTTTCTT
85465606 TTTT
1 TTTT
85465610 GGCTTTAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTCTT
Found at i:85471361 original size:16 final size:17
Alignment explanation
Indices: 85471327--85471377 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
85471317 AATCTTAATA
*
85471327 TATTATTAATAAATTTT
1 TATTATTAATAAATATT
*
85471344 TATTTTTAA-AAATATT
1 TATTATTAATAAATATT
**
85471360 TAAAATTAATAAAATATT
1 TATTATTAAT-AAATATT
85471378 ATGATTTTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 12 0.44
17 8 0.30
18 7 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATTAATAAATATT
Found at i:85482051 original size:76 final size:76
Alignment explanation
Indices: 85481950--85482098 Score: 262
Period size: 76 Copynumber: 2.0 Consensus size: 76
85481940 TTCAAACTTG
*
85481950 GGTTTTAGCAAAATTTTTGTTAAATTTGAATAAAACCGTGGGTTCTAGATAGTGGGTTTTTAAAT
1 GGTTTTAGCAAAATTTTTGTTAAATTTGAATAAAACCCTGGGTTCTAGATAGTGGGTTTTTAAAT
85482015 GTGTGTGGAGA
66 GTGTGTGGAGA
* * *
85482026 GGTTTTAGTAAAATTTTTGTTAAATTTGAATAAAACCCTGGGTTTTGGATAGTGGGTTTTTAAAT
1 GGTTTTAGCAAAATTTTTGTTAAATTTGAATAAAACCCTGGGTTCTAGATAGTGGGTTTTTAAAT
85482091 GTGTGTGG
66 GTGTGTGG
85482099 GGATATCAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 69 1.00
ACGTcount: A:0.28, C:0.05, G:0.26, T:0.42
Consensus pattern (76 bp):
GGTTTTAGCAAAATTTTTGTTAAATTTGAATAAAACCCTGGGTTCTAGATAGTGGGTTTTTAAAT
GTGTGTGGAGA
Found at i:85484166 original size:34 final size:34
Alignment explanation
Indices: 85484117--85484194 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
85484107 TGATTGTATT
* * *
85484117 ACTGTTACTGTTACTGTAATGGGCTAAGGCCC-A
1 ACTGATACTGATACTGTAATGGGCTAAGACCCTA
*
85484150 CACTGATACTGATACTGTAATGGGCTATGACCCTA
1 -ACTGATACTGATACTGTAATGGGCTAAGACCCTA
85484185 ACTGATACTG
1 ACTGATACTG
85484195 GACTATCACT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 38 0.97
35 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (34 bp):
ACTGATACTGATACTGTAATGGGCTAAGACCCTA
Found at i:85484472 original size:44 final size:44
Alignment explanation
Indices: 85484423--85484513 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
85484413 TTTGTTTTCT
85484423 AATAAGGCCTTTTAAAGTTTTTCTTTTGGGATTTATTTACTTTG
1 AATAAGGCCTTTTAAAGTTTTTCTTTTGGGATTTATTTACTTTG
85484467 AATAAGGCCTTTTAAAGTTTTTCTTTTGGGATTTATTTACTTTG
1 AATAAGGCCTTTTAAAGTTTTTCTTTTGGGATTTATTTACTTTG
85484511 AAT
1 AAT
85484514 CATGTCTGCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (44 bp):
AATAAGGCCTTTTAAAGTTTTTCTTTTGGGATTTATTTACTTTG
Found at i:85484528 original size:21 final size:21
Alignment explanation
Indices: 85484502--85484541 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
85484492 TTGGGATTTA
85484502 TTTACTTTGAATCATGTCTGC
1 TTTACTTTGAATCATGTCTGC
85484523 TTTACTTTGAATCATGTCT
1 TTTACTTTGAATCATGTCT
85484542 ACTAGAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (21 bp):
TTTACTTTGAATCATGTCTGC
Found at i:85487958 original size:18 final size:18
Alignment explanation
Indices: 85487935--85487969 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
85487925 AATCCTCTTA
*
85487935 TCTTTTTATTTTTATTTT
1 TCTTTTTATTTTCATTTT
85487953 TCTTTTTATTTTCATTT
1 TCTTTTTATTTTCATTT
85487970 CAATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTATTTTCATTTT
Found at i:85488907 original size:23 final size:23
Alignment explanation
Indices: 85488877--85488922 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
85488867 CATAATTAAA
85488877 CCTTAGTGAACCCCCTTTGAGCC
1 CCTTAGTGAACCCCCTTTGAGCC
85488900 CCTTAGTGAACCCCCTTTGAGCC
1 CCTTAGTGAACCCCCTTTGAGCC
85488923 TACTAACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.39, G:0.17, T:0.26
Consensus pattern (23 bp):
CCTTAGTGAACCCCCTTTGAGCC
Found at i:85488916 original size:13 final size:13
Alignment explanation
Indices: 85488877--85488916 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
85488867 CATAATTAAA
85488877 CCTTAGTGAACCC
1 CCTTAGTGAACCC
*
85488890 CCTT--TG-AGCC
1 CCTTAGTGAACCC
85488900 CCTTAGTGAACCC
1 CCTTAGTGAACCC
85488913 CCTT
1 CCTT
85488917 TGAGCCTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
10 7 0.32
11 2 0.09
12 2 0.09
13 11 0.50
ACGTcount: A:0.17, C:0.40, G:0.15, T:0.28
Consensus pattern (13 bp):
CCTTAGTGAACCC
Found at i:85490942 original size:13 final size:13
Alignment explanation
Indices: 85490924--85490952 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85490914 TTTAGTTTAA
85490924 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85490937 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85490950 TTA
1 TTA
85490953 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:85495733 original size:28 final size:27
Alignment explanation
Indices: 85495702--85495759 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
85495692 GTGATAGAGT
* * *
85495702 CACCAGATACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATA-ATGTGGCAAAGC
*
85495730 CACCTGAAACAGATAATGTGGCAAAGC
1 CACCAGAAACAGATAATGTGGCAAAGC
85495757 CAC
1 CAC
85495760 TTAACAGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (27 bp):
CACCAGAAACAGATAATGTGGCAAAGC
Found at i:85496558 original size:27 final size:27
Alignment explanation
Indices: 85496371--85496565 Score: 223
Period size: 27 Copynumber: 7.2 Consensus size: 27
85496361 GGGCAAAATG
* * * *
85496371 GTAATTTTACCCCACAAGGGTATCT-A
1 GTAATTCTACCCTACAGGGGTATTTCA
85496397 GGTAATTCTACCCTACAGGGGTATTTCA
1 -GTAATTCTACCCTACAGGGGTATTTCA
* * *
85496425 GTATTTCTACCCTACAAGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
85496451 GATAATTCTACCTTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
85496479 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
85496506 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
85496533 GTAATTCTACCCTACAGGGATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
85496560 ATAATT
1 GTAATT
85496566 TTGTAAATTG
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 141 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:85496565 original size:54 final size:54
Alignment explanation
Indices: 85496374--85496565 Score: 262
Period size: 54 Copynumber: 3.6 Consensus size: 54
85496364 CAAAATGGTA
* * * *
85496374 ATTT-TACCCCACAAGGGTATCTAGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
* * *
85496427 ATTTCTACCCTACAAGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
* *
85496481 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
* *
85496535 AATTCTACCCTAC-AGGGATATTTCAATAATT
1 ATTTCTACCCTACAAGGG-TATTTCGATAATT
85496566 TTGTAAATTG
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
53 8 0.07
54 115 0.93
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
Found at i:85500413 original size:26 final size:26
Alignment explanation
Indices: 85500382--85500437 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
85500372 TGAAATGCCC
85500382 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
85500408 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
85500434 ATCA
1 ATCA
85500438 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:85506675 original size:27 final size:26
Alignment explanation
Indices: 85506643--85506741 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
85506633 CATGGCTTAT
*
85506643 ATGTGGCAGAGCTACCAGATCAGATA
1 ATGTGGCAGAGCCACCAGATCAGATA
* *
85506669 ATCGTGGCAGAGCCACTAGAGCAGATA
1 AT-GTGGCAGAGCCACCAGATCAGATA
*
85506696 TATGTGGCAGAGCCACCAGATTAGATA
1 -ATGTGGCAGAGCCACCAGATCAGATA
* *
85506723 TTTGTGGCATAGCCACCAG
1 -ATGTGGCAGAGCCACCAG
85506742 GACGCTTCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.03
27 59 0.94
28 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.20
Consensus pattern (26 bp):
ATGTGGCAGAGCCACCAGATCAGATA
Found at i:85507144 original size:8 final size:8
Alignment explanation
Indices: 85507128--85507157 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
85507118 CTCAAAATAC
85507128 CGGCTTTT
1 CGGCTTTT
*
85507136 CGGCATTT
1 CGGCTTTT
85507144 CGGCTTTT
1 CGGCTTTT
85507152 CGGCTT
1 CGGCTT
85507158 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:85508368 original size:26 final size:26
Alignment explanation
Indices: 85508337--85508444 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
85508327 TGAAATTCCC
*
85508337 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
85508363 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
85508389 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
85508415 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85508441 ATCA
1 ATCA
85508445 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85512006 original size:56 final size:56
Alignment explanation
Indices: 85511934--85512048 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
85511924 TGGTTTCCGA
*
85511934 AAAGTATTTTCTACATTTTCCTATGTTTGTTTCATGGAAAATAGTTTGGTCAATAG
1 AAAGTATTTTCTACATTTTCCTATGTTTGTTTCATGGAAAAAAGTTTGGTCAATAG
85511990 AAAGTATTTTCTACATTTTCCTATGTTTGTTTCATGGAAAAAAGTTTGGTCAATAG
1 AAAGTATTTTCTACATTTTCCTATGTTTGTTTCATGGAAAAAAGTTTGGTCAATAG
85512046 AAA
1 AAA
85512049 ATAACTTACA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (56 bp):
AAAGTATTTTCTACATTTTCCTATGTTTGTTTCATGGAAAAAAGTTTGGTCAATAG
Found at i:85514700 original size:19 final size:18
Alignment explanation
Indices: 85514667--85514702 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
85514657 TATAATTTGA
*
85514667 TTTTTTTATAGTTTTTCT
1 TTTTTTTATACTTTTTCT
85514685 TTTTTTTATGACTTTTTC
1 TTTTTTTAT-ACTTTTTC
85514703 ACCTTAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.11, C:0.08, G:0.06, T:0.75
Consensus pattern (18 bp):
TTTTTTTATACTTTTTCT
Found at i:85526324 original size:27 final size:26
Alignment explanation
Indices: 85526276--85526327 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
85526266 GCGAGGCTGC
*
85526276 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
85526302 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
85526328 TTTCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:85526345 original size:67 final size:69
Alignment explanation
Indices: 85526186--85526346 Score: 209
Period size: 72 Copynumber: 2.3 Consensus size: 69
85526176 CACACCACAG
* * * *
85526186 AAATTGTAGAGAGGCTACCAGATATTGTGACGAAGTCACCAGATACAAATATATATATGTGCCGA
1 AAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATAC--A-AGATATATGTGCCGA
85526251 AGCCACC
63 AGCCACC
* *
85526258 AAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA-AC-AGATATATGTGGCGAGGC
1 AAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAAGATATATGTGCCGAAGC
85526321 CACC
66 CACC
* *
85526325 AGATTTCAGCGAGGCTGCCAGA
1 AAATTGCAGCGAGGCTGCCAGA
85526347 ACGCTTCCTC
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
67 39 0.48
71 2 0.02
72 40 0.49
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (69 bp):
AAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAAGATATATGTGCCGAAGC
CACC
Found at i:85526816 original size:26 final size:27
Alignment explanation
Indices: 85526787--85526840 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
85526777 TCACACAAGT
*
85526787 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
85526813 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
85526840 T
1 T
85526841 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:85526903 original size:27 final size:27
Alignment explanation
Indices: 85526841--85526984 Score: 157
Period size: 27 Copynumber: 5.4 Consensus size: 27
85526831 GGGGCAAAAT
* * * *
85526841 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85526868 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
85526895 GATATTTCTAGCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85526922 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85526949 GGTAATTCTACCTTACA-GGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85526974 AGTAATTCTAC
1 GGTAATTCTAC
85526985 AACTTATCCA
Statistics
Matches: 98, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
25 10 0.10
26 8 0.08
27 80 0.82
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:85526913 original size:54 final size:53
Alignment explanation
Indices: 85526855--85526984 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 53
85526845 ATTTTACCCC
* *
85526855 ACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAGCC-T
1 ACAAGGGTAT-TTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA-CCTT
* * *
85526909 ACAAGGGTATTTTGGTAATTCTATCCTACAGGGGTATTTCGGTAATTCTACCTT
1 ACAAGGGTA-TTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTT
85526963 AC-AGGGTATTTAGTAATTCTAC
1 ACAAGGGTATTTAGTAATTCTAC
85526985 AACTTATCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
52 12 0.18
53 8 0.12
54 46 0.69
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (53 bp):
ACAAGGGTATTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTT
Found at i:85534495 original size:27 final size:27
Alignment explanation
Indices: 85534433--85534578 Score: 139
Period size: 27 Copynumber: 5.4 Consensus size: 27
85534423 GGGGCAAAAT
* * *
85534433 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
85534460 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* ** *
85534487 GGTATTTCTGGCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
85534514 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * * *
85534541 GATAATTTTAACTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
85534568 GGTAATTCTAC
1 GGTAATTCTAC
85534579 AACTTATCCA
Statistics
Matches: 93, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:85545610 original size:34 final size:33
Alignment explanation
Indices: 85545567--85545666 Score: 112
Period size: 33 Copynumber: 3.0 Consensus size: 33
85545557 GCATGCAGTA
*
85545567 ACAGTCTGGGCCTGAGCCCTATTCAGTAATCAAT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAA-CAAT
*
85545601 ACAGTCTGGGCCCTG-GCCCTATACAGTAACAGT
1 ACAGTCTGGG-CCTGAGCCCTATACAGTAACAAT
* * * * *
85545634 AGAATCTCGGCCTTAGCCCTATATAGTAACAAT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACAAT
85545667 GTAATGCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
32 3 0.05
33 26 0.46
34 23 0.41
35 4 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAACAAT
Found at i:85549533 original size:27 final size:27
Alignment explanation
Indices: 85549499--85549581 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
85549489 ATACGCTTAG
*
85549499 TTTG-AAAAATACTGAAATACCCTCGA
1 TTTGTAAAAATACTAAAATACCCTCGA
* *
85549525 TTTGTAAAATTACTAAAATACCTTCGA
1 TTTGTAAAAATACTAAAATACCCTCGA
* * * * *
85549552 CTTGTAAAATTACCAAAGTACCCCCGA
1 TTTGTAAAAATACTAAAATACCCTCGA
85549579 TTT
1 TTT
85549582 ACAGAATTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 4 0.09
27 43 0.91
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTTGTAAAAATACTAAAATACCCTCGA
Found at i:85549781 original size:27 final size:27
Alignment explanation
Indices: 85549570--85549780 Score: 244
Period size: 27 Copynumber: 7.8 Consensus size: 27
85549560 ATTACCAAAG
* *
85549570 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
85549597 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
85549624 TAACCC-CGATTTACATAATTACCGTTT
1 T-ACCCTCGATTTACAGAATTACCGTTT
* *
85549651 TACCCTTGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
85549678 TACCCTCGACTTACAGAAGTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
85549705 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
85549732 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
85549759 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
85549781 TAGAATACCC
Statistics
Matches: 163, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.02
27 155 0.95
28 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:85549789 original size:27 final size:27
Alignment explanation
Indices: 85549759--85549887 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 27
85549749 ATTACTGTTT
** *
85549759 TACCCTCGATTTACAAAATTACTAGAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* * *
85549786 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* *
85549812 TACCCTTGGTTTGTAAAATTAC-AGAAA
1 TACCCTCGATTTGTAAAATTACTA-AAA
* *
85549839 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
85549866 TACCC-CTAGTTTGTAAAATTAC
1 TACCCTCGA-TTTGTAAAATTAC
85549888 CTACGAGTAC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
26 23 0.27
27 61 0.72
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTAAAA
Found at i:85549790 original size:54 final size:54
Alignment explanation
Indices: 85549557--85549791 Score: 143
Period size: 54 Copynumber: 4.4 Consensus size: 54
85549547 TTCGACTTGT
* * * * * *
85549557 AAAATTACCA-AAGTACCCCCGATTTACAGAATTACCATTTTACCCCCGATTTAC
1 AAAATTACTAGAA-TACCCTCGACTTACAGAAGTACCGTTTTACCCTCGATTTAC
* * *** * * * * *
85549611 ATAATTACCATTTTAACCC-CGATTTACATAATTACCGTTTTACCCTTGATTGAC
1 AAAATTACTAGAAT-ACCCTCGACTTACAGAAGTACCGTTTTACCCTCGATTTAC
* * ** * *
85549665 AGAATTAC-CGTTTTACCCTCGACTTACAGAAGTACCGTTTTACCCTTGATTTAT
1 AAAATTACTAG-AATACCCTCGACTTACAGAAGTACCGTTTTACCCTCGATTTAC
* *** * * * * *
85549719 AGAATTACTATTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAGAATACCCTCGACTTACAGAAGTACCGTTTTACCCTCGATTTAC
85549773 AAAATTACTAGAATACCCT
1 AAAATTACTAGAATACCCT
85549792 AGTCTGTAAA
Statistics
Matches: 147, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
53 4 0.03
54 139 0.95
55 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (54 bp):
AAAATTACTAGAATACCCTCGACTTACAGAAGTACCGTTTTACCCTCGATTTAC
Found at i:85549813 original size:26 final size:26
Alignment explanation
Indices: 85549773--85549887 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
85549763 CTCGATTTAC
* *
85549773 AAAATTACTAGAATACCCTAGTCTGT
1 AAAATTACTAAAATACCCTAGTTTGT
* *
85549799 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCC-TAGTTTGT
*
85549826 AAAATTAC-AGAAATACCCTCAATTTGT
1 AAAATTACTA-AAATACCCT-AGTTTGT
*
85549853 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATA-CCCTAGTTTGT
85549880 AAAATTAC
1 AAAATTAC
85549888 CTACGAGTAC
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 18 0.24
27 53 0.70
28 5 0.07
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (26 bp):
AAAATTACTAAAATACCCTAGTTTGT
Found at i:85549870 original size:54 final size:53
Alignment explanation
Indices: 85549773--85549887 Score: 151
Period size: 54 Copynumber: 2.2 Consensus size: 53
85549763 CTCGATTTAC
* * * * *
85549773 AAAATTACTAGAATACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACTAGAATACCCTAATCTGTAAAATTACCAAAATACCCCTAGTTTGT
*
85549826 AAAATTAC-AGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAG-AATACCCT-AATCTGTAAAATTACCAAAATACCCCTAGTTTGT
85549880 AAAATTAC
1 AAAATTAC
85549888 CTACGAGTAC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
52 2 0.04
53 16 0.30
54 36 0.67
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (53 bp):
AAAATTACTAGAATACCCTAATCTGTAAAATTACCAAAATACCCCTAGTTTGT
Found at i:85550790 original size:13 final size:13
Alignment explanation
Indices: 85550772--85550797 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85550762 GCTCGGCAGG
85550772 GACACGCCCATGT
1 GACACGCCCATGT
85550785 GACACGCCCATGT
1 GACACGCCCATGT
85550798 ACGATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:85558269 original size:27 final size:28
Alignment explanation
Indices: 85558231--85558289 Score: 111
Period size: 27 Copynumber: 2.1 Consensus size: 28
85558221 AGCTTAACTT
85558231 GAATCAATATCCTGGAATATCAAAAC-A
1 GAATCAATATCCTGGAATATCAAAACAA
85558258 GAATCAATATCCTGGAATATCAAAACAA
1 GAATCAATATCCTGGAATATCAAAACAA
85558286 GAAT
1 GAAT
85558290 TAAGAACACA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.22
Consensus pattern (28 bp):
GAATCAATATCCTGGAATATCAAAACAA
Found at i:85559653 original size:43 final size:43
Alignment explanation
Indices: 85559599--85559764 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 43
85559589 AGATTTGTAG
* *
85559599 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTTAA
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTTTAA
* * * * *
85559642 CTTCAACCTGCTCCACTACTACTTCAGGAAGATAAAGCTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTT--TAA
* * ** * **
85559687 CTTTAGTCTGCTCCACTGGAACTTCAGGGAGAT-AGGCTGATGG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCT-TTAA
* *
85559730 CTTCAATCTGCTCCACTACTACTT-AGGGCGATAAG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAG
85559765 ATCTACAATC
Statistics
Matches: 95, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
42 7 0.07
43 56 0.59
44 4 0.04
45 28 0.29
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (43 bp):
CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTTTAA
Found at i:85559793 original size:44 final size:44
Alignment explanation
Indices: 85559740--85560496 Score: 408
Period size: 44 Copynumber: 17.5 Consensus size: 44
85559730 CTTCAATCTG
* * *
85559740 CTCCACTACTACTTAGGGCGATAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* * * * * * ** *
85559784 CTCCACTACTACTTAGGGAGATAGGATGGTGGC--TC--AAATCTG
1 CTCCACTACTGCTTAGGGAGACAAGAT-CT-ACAATCTTCAGCCTA
85559826 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* * * ** ***
85559870 CTCTACTACTGCTTAGGGAGATAAGATGGT-GGA--TT-AAATTA
1 CTCCACTACTGCTTAGGGAGACAAGAT-CTACAATCTTCAGCCTA
* * * * * *
85559911 GCTCCACTACTTCTTAGGGAGACAAGAT-TCGCCATTTTC-GATCTG
1 -CTCCACTACTGCTTAGGGAGACAAGATCT-ACAATCTTCAG-CCTA
* *
85559956 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCCA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* * * * ** * **
85560000 CTCCACTACTGCTTAAGGAGATAGGATGGT---GGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGACAAGAT-CTACAATCTTCAGCCTA
* * * *
85560042 CTCCACTACTGCTTA-GGAGACAAGATTCT-CCATTTTC-GATCTG
1 CTCCACTACTGCTTAGGGAGACAAGA-TCTACAATCTTCAG-CCTA
* *
85560085 CTCCACTACTGTTTAAGGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* *
85560129 CTCCACTACTGCTTAGGGAGATAGATGGTGGCTTA-AATC-T---CCTA
1 CTCCACTACTGCTTAGGGAGACA-A-GAT--C-TACAATCTTCAGCCTA
* * * *
85560173 -T--ACTACTGCTTAGGGAGACAAGAT-TCACCATTTTC-GATCTG
1 CTCCACTACTGCTTAGGGAGACAAGATCT-ACAATCTTCAG-CCTA
* *
85560214 CTCCACTACTGTTTAAGGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* * * *
85560258 CTCCACTACTGCTTAGGGAGACAAGAT-TCACCATTTTC-GATCTG
1 CTCCACTACTGCTTAGGGAGACAAGATCT-ACAATCTTCAG-CCTA
* * *
85560302 CTTCACTAATACTTAGGGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* * * * ** * ** *
85560346 CTCCACTACTACTTAGGGAGATAGGATGGT---GGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGACAAGAT-CTACAATCTTCAGCCTA
* * * * * * *
85560388 CTCCATTACTGCTTAGGGAGACAAGATTTTCCAT-TTCCGATCTG
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAG-CCTA
*
85560432 CTCCACTACTGCTTAGGGAGACAAGATCTACAATATTCAGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
* *
85560476 CTCCACTACTGTTTAGAGAGA
1 CTCCACTACTGCTTAGGGAGA
85560497 TAGGATGGTG
Statistics
Matches: 539, Mismatches: 124, Indels: 100
0.71 0.16 0.13
Matches are distributed among these distances:
35 1 0.00
36 1 0.00
37 2 0.00
38 1 0.00
39 2 0.00
40 3 0.01
41 34 0.06
42 109 0.20
43 27 0.05
44 332 0.62
45 16 0.03
46 3 0.01
47 1 0.00
48 5 0.01
49 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
Found at i:85559824 original size:86 final size:86
Alignment explanation
Indices: 85559707--85559938 Score: 324
Period size: 86 Copynumber: 2.7 Consensus size: 86
85559697 CTCCACTGGA
* * * *
85559707 ACTTCAGGGAGATAGGCTGATGGCTTC-AATCTGCTCCACTACTACTTAGGGCGATAAGATCTAC
1 ACTT-AGGGAGATAGGATGGTGGC-TCAAATCTGCTCCACTACTACTTAGGGAGACAAGATCTAC
85559771 AATCTTCAGCCTACTCCACTACT
64 AATCTTCAGCCTACTCCACTACT
*
85559794 ACTTAGGGAGATAGGATGGTGGCTCAAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
1 ACTTAGGGAGATAGGATGGTGGCTCAAATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAA
*
85559859 TCTTCAGCCTACTCTACTACT
66 TCTTCAGCCTACTCCACTACT
* * * * *
85559880 GCTTAGGGAGATAAGATGGTGGATTAAAT-TAGCTCCACTACTTCTTAGGGAGACAAGAT
1 ACTTAGGGAGATAGGATGGTGGCTCAAATCT-GCTCCACTACTACTTAGGGAGACAAGAT
85559939 TCGCCATTTT
Statistics
Matches: 132, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
85 3 0.02
86 125 0.95
87 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (86 bp):
ACTTAGGGAGATAGGATGGTGGCTCAAATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAA
TCTTCAGCCTACTCCACTACT
Found at i:85559938 original size:42 final size:42
Alignment explanation
Indices: 85559784--85559938 Score: 131
Period size: 42 Copynumber: 3.6 Consensus size: 42
85559774 CTTCAGCCTA
* * * *
85559784 CTCCACTACTACTTAGGGAGATAGGATGGTGGCTCAAATCT-G
1 CTCCACTACTGCTTAGGGAGACAAGATGGTGGATCAAAT-TAG
* *
85559826 CTCCACTACTGCTTAGGGAGACAAGAT-CT--A-CAATCTTCAG
1 CTCCACTACTGCTTAGGGAGACAAGATGGTGGATCAA-ATT-AG
* *
85559866 CCTACTCTACTACTGCTTAGGGAGATAAGATGGTGGATTAAATTAG
1 -CT-C-C-ACTACTGCTTAGGGAGACAAGATGGTGGATCAAATTAG
*
85559912 CTCCACTACTTCTTAGGGAGACAAGAT
1 CTCCACTACTGCTTAGGGAGACAAGAT
85559939 TCGCCATTTT
Statistics
Matches: 90, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
38 4 0.04
39 1 0.01
40 1 0.01
41 3 0.03
42 46 0.51
43 2 0.02
44 23 0.26
45 3 0.03
46 2 0.02
47 3 0.03
48 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (42 bp):
CTCCACTACTGCTTAGGGAGACAAGATGGTGGATCAAATTAG
Found at i:85560132 original size:129 final size:129
Alignment explanation
Indices: 85559821--85560278 Score: 740
Period size: 129 Copynumber: 3.5 Consensus size: 129
85559811 GGTGGCTCAA
* *
85559821 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCTACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* * *
85559886 GGAGATAAGATGGTGGATTAAAT-TAGCTCCACTACTTCTTAGGGAGACAAGATTCGCCATTTTC
66 GGAGAT-AGATGGTGGCTTAAATCTA-CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTC
85559950 G
129 G
* * * *
85559951 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCCACTCCACTACTGCTTAA
1 ATCTGCTCCACTACTGCTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
*
85560016 GGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTA-GGAGACAAGATTCTCCATTTTCG
66 GGAGATA-GATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCG
*
85560080 ATCTGCTCCACTACTGTTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* **
85560145 GGAGATAGATGGTGGCTTAAATCTCCTATACTACTGCTTAGGGAGACAAGATTCACCATTTTCG
66 GGAGATAGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCG
*
85560209 ATCTGCTCCACTACTGTTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
85560274 GGAGA
66 GGAGA
85560279 CAAGATTCAC
Statistics
Matches: 309, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
128 30 0.10
129 182 0.59
130 95 0.31
131 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (129 bp):
ATCTGCTCCACTACTGCTTAAGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
GGAGATAGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCG
Found at i:85560281 original size:88 final size:88
Alignment explanation
Indices: 85559912--85560631 Score: 432
Period size: 88 Copynumber: 8.3 Consensus size: 88
85559902 ATTAAATTAG
* *
85559912 CTCCACTACTTCTTAGGGAGACAAGATTCGCCATTTTCGATCTGCTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGA
* *
85559977 CAAGATCTACAATCTTCAACCCA
66 CAAGATCTACAATCTTCAGCCTA
* * * ** ** *
85560000 CTCCACTACTGCTTAAGGAGATAGGATGGT-GGC---TTAAATCTACTCCACTACTGCTTA-GGA
1 CTCCACTACTGCTTAGGGAGACAAGAT--TCACCATTTTCGATCTGCTCCACTACTGCTTAGGGA
* * * *
85560060 GACAAGATTCT-CCATTTTC-GATCTG
64 GACAAGA-TCTACAATCTTCAG-CCTA
* * * * * *
85560085 CTCCACTACTGTTTAAGGAGACAAGA-TCTACAATCTTC-AGCCTACTCCACTACTGCTTAGGGA
1 CTCCACTACTGCTTAGGGAGACAAGATTC-ACCATTTTCGA-TCTGCTCCACTACTGCTTAGGGA
* *
85560148 GATAGATGGTGGCTTA-AATC-T---CCTA
64 GACA-A-GAT--C-TACAATCTTCAGCCTA
* *
85560173 -T--ACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACTGTTTAAGGAGA
1 CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGA
85560235 CAAGATCTACAATCTTCAGCCTA
66 CAAGATCTACAATCTTCAGCCTA
* * *
85560258 CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTTCACTAATACTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGA
85560323 CAAGATCTACAATCTTCAGCCTA
66 CAAGATCTACAATCTTCAGCCTA
* * * ** ** *
85560346 CTCCACTACTACTTAGGGAGATAGGATGGT-GGC---TTAAATCTGCTCCATTACTGCTTAGGGA
1 CTCCACTACTGCTTAGGGAGACAAGAT--TCACCATTTTCGATCTGCTCCACTACTGCTTAGGGA
* * * * * *
85560407 GACAAGATTTTCCAT-TTCCGATCTG
64 GACAAGATCTACAATCTTCAG-CCTA
* * * * * *
85560432 CTCCACTACTGCTTAGGGAGACAAGA-TCTACAATATTC-AGCCTACTCCACTACTGTTTAGAGA
1 CTCCACTACTGCTTAGGGAGACAAGATTC-ACCATTTTCGA-TCTGCTCCACTACTGCTTAGGGA
* * * ** * ** *
85560495 GATAGGATGGT---GGCTTAAATCTG
64 GACAAGAT-CTACAATCTTCAGCCTA
** * * * * * * * * *
85560518 CTTTACAACTGTTTAAGGAGACAAGATTTACCATCTTCGATCTGCTCCATTGCTACCTTATGGAG
1 CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACT-GCTTAGGGAG
* *
85560583 ATAAGATCTACAATCTTCAGCCTG
65 ACAAGATCTACAATCTTCAGCCTA
* *
85560607 CTCCACTGCTGCTCAGGGAGACAAG
1 CTCCACTACTGCTTAGGGAGACAAG
85560632 GCTAGTCGCT
Statistics
Matches: 478, Mismatches: 110, Indels: 87
0.71 0.16 0.13
Matches are distributed among these distances:
80 2 0.00
81 5 0.01
82 2 0.00
83 3 0.01
84 1 0.00
85 97 0.20
86 131 0.27
87 38 0.08
88 160 0.33
89 31 0.06
90 3 0.01
91 2 0.00
92 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACTGCTTAGGGAGA
CAAGATCTACAATCTTCAGCCTA
Found at i:85560422 original size:130 final size:130
Alignment explanation
Indices: 85560258--85560653 Score: 522
Period size: 130 Copynumber: 3.0 Consensus size: 130
85560248 CTTCAGCCTA
* * *
85560258 CTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTTCACTAATACTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAAGATTTACCATTTTCGATCTGCTCCACTACTACTTAGGGAGA
*
85560323 CAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATCTG
66 CAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTG
* * * *
85560388 CTCCATTACTGCTTAGGGAGACAAGATTTTCCATTTCCGATCTGCTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAAGATTTACCATTTTCGATCTGCTCCACTACTACTTAGGGAGA
* * *
85560453 CAAGATCTACAATATTCAGCCTACTCCACTACTGTTTAGAGAGATAGGATGGTGGCTTAAATCTG
66 CAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTG
** * * * * * * *
85560518 CTTTACAACTGTTTAAGGAGACAAGATTTACCATCTTCGATCTGCTCCATTGCTACCTTATGGAG
1 CTCCACTACTGCTTAGGGAGACAAGATTTACCATTTTCGATCTGCTCCACTACTA-CTTAGGGAG
* * * * * * * *
85560583 ATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGACAAGGCTAGTCGCTTAAATC
65 ACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGA-TAGGATGGTGGCTTAAATC
85560648 TG
129 TG
85560650 CTCC
1 CTCC
85560654 CTTGCTACCT
Statistics
Matches: 227, Mismatches: 37, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
130 162 0.71
131 46 0.20
132 19 0.08
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (130 bp):
CTCCACTACTGCTTAGGGAGACAAGATTTACCATTTTCGATCTGCTCCACTACTACTTAGGGAGA
CAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTG
Found at i:85560473 original size:218 final size:217
Alignment explanation
Indices: 85560039--85560496 Score: 729
Period size: 218 Copynumber: 2.1 Consensus size: 217
85560029 TGGCTTAAAT
* * **
85560039 CTACTCCACTACTGCTTA-GGAGACAAGATTCTCCATTTTCGATCTGCTCCACTACTGTTTAAGG
1 CTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTAATACTTAAGG
*
85560103 AGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGATGGTGGCTTAAATC
66 AGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGATGGTGGCTTAAATC
* * *
85560168 TCCTATACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTACTGTTTAAGGA
131 TCCTACACTACTGCTTAGGGAGACAAGATTCACCATTTCCGATCTGCTCCACTACTGCTTAAGGA
*
85560233 GACAAGATCTACAATCTTCAGC
196 GACAAGATCTACAATATTCAGC
* *
85560255 CTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTTCACTAATACTTAGGG
1 CTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTAATACTTAAGG
85560320 AGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAAT
66 AGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATA-GATGGTGGCTTAAAT
* * * ** *
85560385 CTGCTCCATTACTGCTTAGGGAGACAAGATTTTCCATTTCCGATCTGCTCCACTACTGCTTAGGG
130 CTCCTACACTACTGCTTAGGGAGACAAGATTCACCATTTCCGATCTGCTCCACTACTGCTTAAGG
85560450 AGACAAGATCTACAATATTCAGC
195 AGACAAGATCTACAATATTCAGC
* *
85560473 CTACTCCACTACTGTTTAGAGAGA
1 CTACTCCACTACTGCTTAGGGAGA
85560497 TAGGATGGTG
Statistics
Matches: 221, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
216 18 0.08
217 88 0.40
218 115 0.52
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (217 bp):
CTACTCCACTACTGCTTAGGGAGACAAGATTCACCATTTTCGATCTGCTCCACTAATACTTAAGG
AGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGATGGTGGCTTAAATC
TCCTACACTACTGCTTAGGGAGACAAGATTCACCATTTCCGATCTGCTCCACTACTGCTTAAGGA
GACAAGATCTACAATATTCAGC
Found at i:85560589 original size:45 final size:45
Alignment explanation
Indices: 85560534--85560724 Score: 126
Period size: 45 Copynumber: 4.3 Consensus size: 45
85560524 AACTGTTTAA
* * * *
85560534 GGAGACAAGATTTACCATCTTCGATCTGCTCCATTGCTACCTTAT
1 GGAGATAAGATCTACCATCTTCGATCTGCTCCATTGCTACCTCAG
* * * *
85560579 GGAGATAAGATCTACAATCTTC-AGCCTGCTCCACTGCT-GCTCAG
1 GGAGATAAGATCTACCATCTTCGA-TCTGCTCCATTGCTACCTCAG
* * * * ** *
85560623 GGAGACAAG-GCTAGTC-GCTTAAATCTGCTCCCTTGCTACCTCAG
1 GGAGATAAGATCTA-CCATCTTCGATCTGCTCCATTGCTACCTCAG
* * *
85560667 GGAGATAAGAT-T-CGTCGTCCTT-GATCTGCTCCATTGCTACCTTAT
1 GGAGATAAGATCTAC--CAT-CTTCGATCTGCTCCATTGCTACCTCAG
85560712 GGAGATAAGATCT
1 GGAGATAAGATCT
85560725 GTTAATTCAC
Statistics
Matches: 110, Mismatches: 26, Indels: 19
0.71 0.17 0.12
Matches are distributed among these distances:
43 17 0.15
44 28 0.25
45 61 0.55
46 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (45 bp):
GGAGATAAGATCTACCATCTTCGATCTGCTCCATTGCTACCTCAG
Found at i:85573579 original size:46 final size:45
Alignment explanation
Indices: 85573526--85573791 Score: 265
Period size: 46 Copynumber: 5.8 Consensus size: 45
85573516 TGATTGAGCA
85573526 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-ATGCGAATG
* * * *
85573572 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
*
85573617 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * *
85573665 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
* *
85573710 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* *
85573758 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85573792 GGGGCGGGTT
Statistics
Matches: 184, Mismatches: 18, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
44 1 0.01
45 6 0.03
46 88 0.48
47 57 0.31
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATG
Found at i:85573640 original size:47 final size:47
Alignment explanation
Indices: 85573523--85573740 Score: 238
Period size: 47 Copynumber: 4.7 Consensus size: 47
85573513 GGATGATTGA
* *
85573523 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-AA-T-G
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG
* *
85573566 CGAATGTCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAG
1 -GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
85573616 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
85573664 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
85573709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
85573741 ATTTATGGAT
Statistics
Matches: 146, Mismatches: 14, Indels: 25
0.79 0.08 0.14
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 5 0.03
46 57 0.39
47 60 0.41
48 6 0.04
49 3 0.02
50 7 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85573665 original size:93 final size:93
Alignment explanation
Indices: 85573523--85573786 Score: 465
Period size: 93 Copynumber: 2.8 Consensus size: 93
85573513 GGATGATTGA
*
85573523 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
85573588 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
85573616 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
85573681 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
85573709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
85573774 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85573787 ACTTAGGGGC
Statistics
Matches: 163, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85574053 original size:19 final size:20
Alignment explanation
Indices: 85574016--85574053 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
85574006 ATAAGGTGGT
85574016 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
85574036 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
85574054 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:85587562 original size:6 final size:6
Alignment explanation
Indices: 85587551--85587595 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
85587541 TCCTCTTATC
* *
85587551 TTTTTA TTTTTA TTTTTA TTTTTC TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
85587596 CAGTTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:85587581 original size:24 final size:24
Alignment explanation
Indices: 85587549--85587595 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
85587539 AATCCTCTTA
*
85587549 TCTTTTTATTTTTATTTTTATTTT
1 TCTTTTTATTTTTATTTTCATTTT
85587573 TCTTTTTATTTTTATTTTCATTT
1 TCTTTTTATTTTTATTTTCATTT
85587596 CAGTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (24 bp):
TCTTTTTATTTTTATTTTCATTTT
Found at i:85587602 original size:18 final size:18
Alignment explanation
Indices: 85587562--85587605 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
85587552 TTTTATTTTT
* *
85587562 ATTTTTATTTTTCTTTTT
1 ATTTTTATTTTTCATTTC
85587580 ATTTTTA-TTTTCATTTC
1 ATTTTTATTTTTCATTTC
*
85587597 AGTTTTATT
1 ATTTTTATT
85587606 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (18 bp):
ATTTTTATTTTTCATTTC
Found at i:85588118 original size:17 final size:19
Alignment explanation
Indices: 85588079--85588119 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
85588069 TCTCATAATC
85588079 TTGATCGAATGAATTTTGA
1 TTGATCGAATGAATTTTGA
85588098 TTGATC-AAT-AATTATTG-
1 TTGATCGAATGAATT-TTGA
85588115 TTGAT
1 TTGAT
85588120 ATATTATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.43
18 6 0.29
19 6 0.29
ACGTcount: A:0.32, C:0.05, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGATCGAATGAATTTTGA
Found at i:85590427 original size:13 final size:13
Alignment explanation
Indices: 85590409--85590437 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85590399 TTTAGTTTAA
85590409 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85590422 TTAGTTAATTAGT
1 TTAGTTAATTAGT
85590435 TTA
1 TTA
85590438 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:85594970 original size:18 final size:17
Alignment explanation
Indices: 85594938--85594971 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
85594928 GGCCTTAGCC
*
85594938 CATTACAGAATTAGAAA
1 CATTACAGAACTAGAAA
85594955 CATTATCAGAACTAGAA
1 CATTA-CAGAACTAGAA
85594972 TCAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAACTAGAAA
Found at i:85594974 original size:12 final size:12
Alignment explanation
Indices: 85594959--85594996 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
85594949 TAGAAACATT
85594959 ATCAGAACTAGA
1 ATCAGAACTAGA
*
85594971 ATCA-AAATAAGA
1 ATCAGAACT-AGA
85594983 ATCAGAACTAGA
1 ATCAGAACTAGA
85594995 AT
1 AT
85594997 TAGGTGACAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.18
Consensus pattern (12 bp):
ATCAGAACTAGA
Found at i:85595201 original size:27 final size:26
Alignment explanation
Indices: 85595163--85595271 Score: 137
Period size: 27 Copynumber: 4.1 Consensus size: 26
85595153 CAGCATGGCT
* *
85595163 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAGAGCC
*
85595189 ACCAGATACAGATATTATGGCAGAGCC
1 ACCAGA-ACAGATATTGTGGCAGAGCC
*
85595216 ACCAGAACAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-TTGTGGCAGAGCC
* *
85595243 ACCAGAAACAGATAATGTGGCAAAGCC
1 ACCAG-AACAGATATTGTGGCAGAGCC
85595270 AC
1 AC
85595272 TTAACAGAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.18
27 52 0.71
28 8 0.11
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGCC
Found at i:85596070 original size:27 final size:27
Alignment explanation
Indices: 85595911--85596077 Score: 174
Period size: 27 Copynumber: 6.2 Consensus size: 27
85595901 GGTATCTAGG
* **
85595911 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAA
* * * **
85595938 TATTTCTACCCTTCAAGGGTATTTTGA
1 TAATTCTACCCTACAGGGGTATTTCAA
*
85595965 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAA
* * **
85595992 TATTTCTA-CCTAACAAGGGTATTTCGG
1 TAATTCTACCCT-ACAGGGGTATTTCAA
* * *
85596019 TAATTCTATCCTTCAGAGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
85596046 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
85596073 TAATT
1 TAATT
85596078 TTGTAAATTG
Statistics
Matches: 114, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 3 0.03
27 108 0.95
28 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:85596070 original size:54 final size:54
Alignment explanation
Indices: 85595886--85596070 Score: 205
Period size: 54 Copynumber: 3.4 Consensus size: 54
85595876 CAAAATGGTA
* * * * *
85595886 ATTT-TACCCCACAAAGGTATCTAGGTAATTCTACCCTAT-AGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT-TCAGGGGTATTTCAGT
* * * *
85595939 ATTTCTACCCTTCAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTTCAGGGGTATTTCAGT
* * *
85595993 ATTTCTA-CCTAACAAGGGTATTTCGGTAATTCTATCCTTCAGAGGTATTTCAAT
1 ATTTCTACCCT-ACAAGGGTATTTCGGTAATTCTACCCTTCAGGGGTATTTCAGT
* *
85596047 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
85596071 AATAATTTTG
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
53 7 0.06
54 101 0.91
55 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTTCAGGGGTATTTCAGT
Found at i:85596101 original size:81 final size:80
Alignment explanation
Indices: 85595935--85596108 Score: 185
Period size: 81 Copynumber: 2.1 Consensus size: 80
85595925 AGGGGTATTT
* * ** *
85595935 CGGTATTTCTACCCTTCAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTCAGTATTTCTA
1 CGGTAATTCTATCCTTCAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATATTTCTA
***
85596000 CCTAACAAGGGTATTT
66 -CTAACAAGGGTAAAA
85596016 CGGTAATTCTATCCTTC-AGAGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTT-
1 CGGTAATTCTATCCTTCAAG-GGTATTTCAATAATTCTACCCTACAGGGGTATTTCAAT-ATTTC
*
85596079 T-GTAA-ATTGAGGGTAAAA
64 TACTAACA---AGGGTAAAA
85596097 CGGTAATTCTAT
1 CGGTAATTCTAT
85596109 AAATCAGGGG
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 3 0.04
80 2 0.03
81 69 0.87
82 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (80 bp):
CGGTAATTCTATCCTTCAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATATTTCTA
CTAACAAGGGTAAAA
Found at i:85606254 original size:328 final size:328
Alignment explanation
Indices: 85605657--85606284 Score: 1186
Period size: 328 Copynumber: 1.9 Consensus size: 328
85605647 TCATTACCAT
*
85605657 CTGTAGAGTAGCATCAATGTTGTCAAATCATTGAAAACACTACTGCTCGAATCGAGTGAGGCGCT
1 CTGTAGAGTAGCATCAATGTTGTCAAATCATTGAAAACACTACTGCTCGAATAGAGTGAGGCGCT
*
85605722 CAAAGATGTCAGCATATGAAGCCGTCACATGAACTGGACGAGAGGGTGGTGGTGGCTGAGACGGT
66 CAAAGATGTCAGCATATGAAGCCGCCACATGAACTGGACGAGAGGGTGGTGGTGGCTGAGACGGT
85605787 GGGTCCTCGTGCTGTGGAGGGACATCATCAGTAATGTCCTTGGGGGCCTCCTCCTCGTTAGATTG
131 GGGTCCTCGTGCTGTGGAGGGACATCATCAGTAATGTCCTTGGGGGCCTCCTCCTCGTTAGATTG
85605852 AGCGAGACGATATTGAGGAGGGTAGGTTCCTCGGTGCTTTTCGATCACCCTCATGCTAAGCATGC
196 AGCGAGACGATATTGAGGAGGGTAGGTTCCTCGGTGCTTTTCGATCACCCTCATGCTAAGCATGC
85605917 TCGAGATGCCTTGTGGAGACATCTGGCCAATGAGGGTCAAATGAGATGTGGAGGTGTTGACAAAT
261 TCGAGATGCCTTGTGGAGACATCTGGCCAATGAGGGTCAAATGAGATGTGGAGGTGTTGACAAAT
85605982 CTG
326 CTG
* *
85605985 CTGTAGAGTAGCATCAATGTTGTCAAATCGTTGAAAACACTGCTGCTCGAATAGAGTGAGGCGCT
1 CTGTAGAGTAGCATCAATGTTGTCAAATCATTGAAAACACTACTGCTCGAATAGAGTGAGGCGCT
*
85606050 CAGAA-ATGTCAGCATATGAAGCCGCCGCATGAACTGGACGAGAGGGTGGTGGTGGCTGAGACGG
66 CA-AAGATGTCAGCATATGAAGCCGCCACATGAACTGGACGAGAGGGTGGTGGTGGCTGAGACGG
85606114 TGGGTCCTCGTGCTGTGGAGGGACATCATCAGTAATGTCCTTGGGGGCCTCCTCCTCGTTAGATT
130 TGGGTCCTCGTGCTGTGGAGGGACATCATCAGTAATGTCCTTGGGGGCCTCCTCCTCGTTAGATT
85606179 GAGCGAGACGATATTGAGGAGGGTAGGTTCCTCGGTGCTTTTCGATCACCCTCATGCTAAGCATG
195 GAGCGAGACGATATTGAGGAGGGTAGGTTCCTCGGTGCTTTTCGATCACCCTCATGCTAAGCATG
*
85606244 TTCGAGATGCCTTGTGGAGACATCTGGCCAATGAGGGTCAA
260 CTCGAGATGCCTTGTGGAGACATCTGGCCAATGAGGGTCAA
85606285 TGATGATTCT
Statistics
Matches: 293, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
328 291 0.99
329 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (328 bp):
CTGTAGAGTAGCATCAATGTTGTCAAATCATTGAAAACACTACTGCTCGAATAGAGTGAGGCGCT
CAAAGATGTCAGCATATGAAGCCGCCACATGAACTGGACGAGAGGGTGGTGGTGGCTGAGACGGT
GGGTCCTCGTGCTGTGGAGGGACATCATCAGTAATGTCCTTGGGGGCCTCCTCCTCGTTAGATTG
AGCGAGACGATATTGAGGAGGGTAGGTTCCTCGGTGCTTTTCGATCACCCTCATGCTAAGCATGC
TCGAGATGCCTTGTGGAGACATCTGGCCAATGAGGGTCAAATGAGATGTGGAGGTGTTGACAAAT
CTG
Found at i:85608714 original size:222 final size:222
Alignment explanation
Indices: 85608328--85608773 Score: 865
Period size: 222 Copynumber: 2.0 Consensus size: 222
85608318 TAGCATAGTT
85608328 AAACCTGCTGTAACTGCAAATACTATTGAATTAAAACCTAACACTATTCAGATGATACAACAATT
1 AAACCTGCTGTAACTGCAAATACTATTGAATTAAAACCTAACACTATTCAGATGATACAACAATT
* *
85608393 TGTTCAGTTTGATGGTTTGCAGGATGAAGATCCCAACGCTCACTTAGCAAACTTTCTGCAATTTT
66 TGTTCAGTTTGATGGTTTGCAGGATGAAGATCCCAACGCTCACCTAGCAAACCTTCTGCAATTTT
85608458 GCGATACATTTAAAACCAATGGCTTTTCTGATGATGCTATTCGTCTTCGGTTATTCCCTTTTTCA
131 GCGATACATTTAAAACCAATGGCTTTTCTGATGATGCTATTCGTCTTCGGTTATTCCCTTTTTCA
85608523 TTAAGGAATAAAGCTAAACAGTGGTTG
196 TTAAGGAATAAAGCTAAACAGTGGTTG
85608550 AAACCTGCTGTAACTGCAAATACTATTGAATTAAAACCTAACACTATTCAGATGATACAACAATT
1 AAACCTGCTGTAACTGCAAATACTATTGAATTAAAACCTAACACTATTCAGATGATACAACAATT
*
85608615 TGTTCAGTTTGATGGTTTGCAGGATGAAGATCCCAACGCTCACCTAGCAAACCTTCTGCCATTTT
66 TGTTCAGTTTGATGGTTTGCAGGATGAAGATCCCAACGCTCACCTAGCAAACCTTCTGCAATTTT
85608680 GCGATACATTTAAAACCAATGGCTTTTCTGATGATGCTATTCGTCTTCGGTTATTCCCTTTTTCA
131 GCGATACATTTAAAACCAATGGCTTTTCTGATGATGCTATTCGTCTTCGGTTATTCCCTTTTTCA
85608745 TTAAGGAATAAAGCTAAACAGTGGTTG
196 TTAAGGAATAAAGCTAAACAGTGGTTG
85608772 AA
1 AA
85608774 CTCGTTACCA
Statistics
Matches: 221, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 221 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (222 bp):
AAACCTGCTGTAACTGCAAATACTATTGAATTAAAACCTAACACTATTCAGATGATACAACAATT
TGTTCAGTTTGATGGTTTGCAGGATGAAGATCCCAACGCTCACCTAGCAAACCTTCTGCAATTTT
GCGATACATTTAAAACCAATGGCTTTTCTGATGATGCTATTCGTCTTCGGTTATTCCCTTTTTCA
TTAAGGAATAAAGCTAAACAGTGGTTG
Found at i:85614437 original size:26 final size:27
Alignment explanation
Indices: 85614408--85614461 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
85614398 TCACACAAGT
*
85614408 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
85614434 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
85614461 T
1 T
85614462 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:85614510 original size:27 final size:27
Alignment explanation
Indices: 85614462--85614607 Score: 150
Period size: 27 Copynumber: 5.4 Consensus size: 27
85614452 GGGGCAAAAT
* * *
85614462 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
85614489 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * **
85614516 GGTATTTCTAGCCAACAAGAATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
85614543 GGTAATTCTATCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
85614570 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
85614597 GGTAATTCTAC
1 GGTAATTCTAC
85614608 AACTTATCCA
Statistics
Matches: 94, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 2 0.02
27 89 0.95
28 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:85624884 original size:34 final size:33
Alignment explanation
Indices: 85624835--85624930 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 33
85624825 GCAGTAACAG
* *
85624835 TCTGGGCC-TGAGCCCTATTCAGTAATCAATACAT
1 TCTGGGCCTTG-GCCCTATACAGTAA-CAATACAA
* *
85624869 TCTGGGCCTTGGCCCTATACAGTAACAGTAGAA
1 TCTGGGCCTTGGCCCTATACAGTAACAATACAA
* * *
85624902 TCTCGGCCTTAGCCCTATATAGTAACAAT
1 TCTGGGCCTTGGCCCTATACAGTAACAAT
85624931 GTAATGCAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
33 30 0.57
34 21 0.40
35 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (33 bp):
TCTGGGCCTTGGCCCTATACAGTAACAATACAA
Found at i:85638738 original size:6 final size:6
Alignment explanation
Indices: 85638727--85638769 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
85638717 GAAATTAATA
85638727 AAAAAT AAAAAT AAAAAT AAAAAT -AAAAT -AAAAT -AAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
85638770 CATCATCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 15 0.42
6 21 0.58
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:85638742 original size:5 final size:5
Alignment explanation
Indices: 85638728--85638769 Score: 57
Period size: 5 Copynumber: 7.8 Consensus size: 5
85638718 AAATTAATAA
85638728 AAAAT AAAAAT AAAAAT AAAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT -AAAAT -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAA
85638770 CATCATCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 19 0.53
6 17 0.47
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:85640701 original size:32 final size:32
Alignment explanation
Indices: 85640664--85640729 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
85640654 AATCCATCAA
*
85640664 AATCTTGTCACGCTATTTCTAGGCTCGCAATC
1 AATCTTGTCACACTATTTCTAGGCTCGCAATC
85640696 AATCTTGTCACACTATTTCTAGGCTCGCAATC
1 AATCTTGTCACACTATTTCTAGGCTCGCAATC
85640728 AA
1 AA
85640730 CTCCGCTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (32 bp):
AATCTTGTCACACTATTTCTAGGCTCGCAATC
Found at i:85643310 original size:6 final size:6
Alignment explanation
Indices: 85643301--85643339 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
85643291 AATAAAATTG
*
85643301 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
85643340 GATAGGAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:85659055 original size:28 final size:28
Alignment explanation
Indices: 85658992--85659089 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
85658982 ATATTGAGTC
*
85658992 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
85659019 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
85659047 CGCACACTTAGTGCTGTGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
85659076 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85659090 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 19 0.30
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85661945 original size:29 final size:28
Alignment explanation
Indices: 85661903--85661963 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
85661893 ACTTGTTGGC
*
85661903 ATATCAAGCACCTTGAAACAAATTCAAAA
1 ATATCAAACACCTTGAAACAAA-TCAAAA
*
85661932 ATATCAAACACCTTGAAACAAATGAAAA
1 ATATCAAACACCTTGAAACAAATCAAAA
85661960 ATAT
1 ATAT
85661964 GGGTTGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (28 bp):
ATATCAAACACCTTGAAACAAATCAAAA
Found at i:85665251 original size:28 final size:27
Alignment explanation
Indices: 85665198--85665251 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
85665188 TAATTTATAT
*
85665198 AAAATATAAAAAATTTAAATTATGTAC
1 AAAATATAAAAAATTTAAATAATGTAC
*
85665225 AAAATATGAAAAGATTATAAA-AATGTA
1 AAAATAT-AAAAAATT-TAAATAATGTA
85665252 TAGTGAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 12 0.52
29 4 0.17
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATATAAAAAATTTAAATAATGTAC
Found at i:85667360 original size:44 final size:45
Alignment explanation
Indices: 85667255--85667369 Score: 137
Period size: 44 Copynumber: 2.6 Consensus size: 45
85667245 ACTGCAGCTA
* * *
85667255 CTCCACTGCAACTTCAGGGAGATATGGTTCGTTTATTTTATCCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGTTCGTTGATTTGATCCTG
** *
85667300 CTCTTCTGCAACTTCAGAGAGATAAGGATT-G-TGATTTCGAT-CTG
1 CTCCACTGCAACTTCAGGGAGATAAGG-TTCGTTGATTT-GATCCTG
85667344 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
85667370 ATTTGCAATC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
44 31 0.53
45 26 0.44
46 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGGTTCGTTGATTTGATCCTG
Found at i:85667428 original size:89 final size:88
Alignment explanation
Indices: 85667335--85667724 Score: 550
Period size: 89 Copynumber: 4.4 Consensus size: 88
85667325 GGATTGTGAT
* * *
85667335 TTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGCCTGTTACCCTACTA
1 TTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
85667400 CTTAGAGGGGTAAGGCTTGCTTTC
66 CTTAG-GGGGTAAGGCTTGCTTTC
* * * *
85667424 TTCGATCTGTTCCACTGCAGCTTCAGGGAGACAAGATTTGTAATCTTTAGCCTGTTACCCTACTA
1 TTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
* *
85667489 CTTAGGGGGTTAAGGATTGCTTTT
66 CTTAGGGGG-TAAGGCTTGCTTTC
* *
85667513 TTCGATCTGTTCCACTGCAGCTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
1 TTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
*
85667578 CTTAGAGGGTTAAGGCTTGCTTTC
66 CTTAG-GGGGTAAGGCTTGCTTTC
* * * *
85667602 TTCGATCTGTTCCACTGTAGA-TTTAGGGAAACAAGATCTACAATCTTCAGCCTGTTA-CCTACT
1 TTCGATCTGTTCCACTGCA-ACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACT
* **
85667665 ACTTAGGGGTTAAGGCTTGCCGTC
65 ACTTAGGGGGTAAGGCTTGCTTTC
*
85667689 TTTGATCTGTTCCACTGCAACTTCAGGGAGACAAGA
1 TTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGA
85667725 CCTGTGAATT
Statistics
Matches: 271, Mismatches: 26, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
86 1 0.00
87 46 0.17
88 16 0.06
89 205 0.76
90 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (88 bp):
TTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTA
CTTAGGGGGTAAGGCTTGCTTTC
Found at i:85667557 original size:178 final size:177
Alignment explanation
Indices: 85667334--85667724 Score: 606
Period size: 178 Copynumber: 2.2 Consensus size: 177
85667324 AGGATTGTGA
* *
85667334 TTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGCCTGTTACCCTACT
1 TTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACT
* * * *
85667399 ACTTAGAGGGGTAAGGCTTGCTTTCTTCGATCTGTTCCACTGCAGCTTCAGGGAGACAAGATTTG
66 ACTTAGAGGGGTAAGGCTTGCTTTCTTCGATCTGTTCCACTGCAGATTCAGGGAAACAAGATCTA
* * * *
85667464 TAATCTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGATTG-CTTT
131 CAATCTTCAGCCTGTTA-CCTACTACTTA-GGGGTTAAGGATTGCCGTC
*
85667512 TTTCGATCTGTTCCACTGCAGCTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACT
1 TTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACT
* * *
85667577 ACTTAGAGGGTTAAGGCTTGCTTTCTTCGATCTGTTCCACTGTAGATTTAGGGAAACAAGATCTA
66 ACTTAGAGGGGTAAGGCTTGCTTTCTTCGATCTGTTCCACTGCAGATTCAGGGAAACAAGATCTA
*
85667642 CAATCTTCAGCCTGTTACCTACTACTTAGGGGTTAAGGCTTGCCGTC
131 CAATCTTCAGCCTGTTACCTACTACTTAGGGGTTAAGGATTGCCGTC
*
85667689 TTT-GATCTGTTCCACTGCAACTTCAGGGAGACAAGA
1 TTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGA
85667725 CCTGTGAATT
Statistics
Matches: 195, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
176 44 0.23
177 16 0.08
178 135 0.69
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (177 bp):
TTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACT
ACTTAGAGGGGTAAGGCTTGCTTTCTTCGATCTGTTCCACTGCAGATTCAGGGAAACAAGATCTA
CAATCTTCAGCCTGTTACCTACTACTTAGGGGTTAAGGATTGCCGTC
Found at i:85667612 original size:44 final size:43
Alignment explanation
Indices: 85667386--85667612 Score: 112
Period size: 44 Copynumber: 5.1 Consensus size: 43
85667376 AATCTTCAGC
* *
85667386 CTGTTACCCTACTACTTAGAGGGGTAAGGCTTGCTTTCTTCGAT
1 CTGTTACCCTACTACTTAG-GGGATAAGGATTGCTTTCTTCGAT
* * * * *
85667430 CTGTT-CCACTGC-AGCTTCAGGGAGACAA-GATTTG-TAATCTT-TAGC
1 CTGTTACC-CTACTA-CTT-AGGG-GATAAGGA-TTGCT-TTCTTCGA-T
* *
85667475 CTGTTACCCTACTACTTAGGGGGTTAAGGATTGCTTTTTTCGAT
1 CTGTTACCCTACTACTTA-GGGGATAAGGATTGCTTTCTTCGAT
* ** *
85667519 CTGTT-CCACTGC-AGCTTCAGGGAGATAA-GATCTGCAATCTTC-AGC
1 CTGTTACC-CTACTA-CTT-AGGG-GATAAGGAT-TGCTTTCTTCGA-T
* *
85667564 CTGTTACCCTACTACTTAGAGGGTTAAGGCTTGCTTTCTTCGAT
1 CTGTTACCCTACTACTTAG-GGGATAAGGATTGCTTTCTTCGAT
85667608 CTGTT
1 CTGTT
85667613 CCACTGTAGA
Statistics
Matches: 133, Mismatches: 26, Indels: 48
0.64 0.13 0.23
Matches are distributed among these distances:
43 6 0.05
44 63 0.47
45 58 0.44
46 6 0.05
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTACTTAGGGGATAAGGATTGCTTTCTTCGAT
Found at i:85674220 original size:48 final size:48
Alignment explanation
Indices: 85674066--85674213 Score: 226
Period size: 48 Copynumber: 3.1 Consensus size: 48
85674056 ATATATACAC
**
85674066 ATCTCATACATATTTCACATTAGCCATTT-GGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCC-TTTCGGCTTTACCACATATATAT
** *
85674114 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
*
85674162 ATCTCATACATATTTTACATTAGCCTTTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
85674210 ATCT
1 ATCT
85674214 TGTACATCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 3 0.03
48 87 0.97
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
Found at i:85675525 original size:26 final size:27
Alignment explanation
Indices: 85675480--85675532 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
85675470 TTAAATTCTG
* *
85675480 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
85675507 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
85675533 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:85677696 original size:31 final size:31
Alignment explanation
Indices: 85677653--85677714 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
85677643 TTCAATTCTA
*
85677653 CTTCTTAACATTTGTCAATTTAAAGAGCGTC
1 CTTCCTAACATTTGTCAATTTAAAGAGCGTC
85677684 CTTCCTAACATTTGTCAATTTAAAGAGCGTC
1 CTTCCTAACATTTGTCAATTTAAAGAGCGTC
85677715 GTACTTGTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (31 bp):
CTTCCTAACATTTGTCAATTTAAAGAGCGTC
Found at i:85677929 original size:28 final size:27
Alignment explanation
Indices: 85677898--85677999 Score: 87
Period size: 29 Copynumber: 3.6 Consensus size: 27
85677888 ACTGACCGAT
85677898 CTCGCACACATAGTGCTCAGTTGAAGAA
1 CTCGCACACATAGTGCTCAGTT-AAGAA
* * * *
85677926 CTCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCAGTTA-AGAA
* *
85677955 TTCGCACACATAGTGCTCGGTTAAAAGAA
1 CTCGCACACATAGTGCTCAGTT--AAGAA
* *
85677984 TTTGCACACATAGTGC
1 CTCGCACACATAGTGC
85678000 CTCTAATCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
28 20 0.34
29 38 0.64
30 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (27 bp):
CTCGCACACATAGTGCTCAGTTAAGAA
Found at i:85677961 original size:57 final size:58
Alignment explanation
Indices: 85677892--85678002 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
85677882 GTGCCCACTG
*
85677892 ACCGATCTCGCACACATAGTGCTCAGTT-GAAGAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTCAATT
* * * * *
85677949 ACCGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACATAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTC
85678003 TAATCATTCG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 26 0.55
58 21 0.45
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTCAATT
Found at i:85678547 original size:163 final size:160
Alignment explanation
Indices: 85678282--85678638 Score: 608
Period size: 163 Copynumber: 2.2 Consensus size: 160
85678272 GGATTTTGTC
* *
85678282 CCAGCACGAATTC-CTTCGGGGCTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTT
* *
85678346 AGCCCGGATATATCACCAGCATGAATGCTCTTCGGGACTCAGCCCGGATACATCACCAGCACGAA
66 AGCCCGAATATATCACCAGCACGAATGCTCTTCGGGACTCAGCCCGGATACATCACCAGCACGAA
85678411 TGCTCTTCGGGACTTAGCCCGGATATATCA
131 TGCTCTTCGGGACTTAGCCCGGATATATCA
*
85678441 CCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCTTCGGGA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG--C-TCTTCGGGA
* *
85678506 CTTAGCCCGAATATATCACCAGCACGAATGTTCTTCGGGACTTAGCCCGGATACATCACCAGCAC
63 CTTAGCCCGAATATATCACCAGCACGAATGCTCTTCGGGACTCAGCCCGGATACATCACCAGCAC
85678571 GAATGCTCTTCGGGACTTAGCCCGGATATATCA
128 GAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
85678604 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
85678639 TAACATACTG
Statistics
Matches: 185, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
159 11 0.06
160 37 0.20
162 1 0.01
163 136 0.74
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (160 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTT
AGCCCGAATATATCACCAGCACGAATGCTCTTCGGGACTCAGCCCGGATACATCACCAGCACGAA
TGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:85678639 original size:40 final size:40
Alignment explanation
Indices: 85678282--85678640 Score: 576
Period size: 40 Copynumber: 8.9 Consensus size: 40
85678272 GGATTTTGTC
* * *
85678282 CCAGCACGAATTC-CTTCGGGGCTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
85678321 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
85678361 CCAGCATGAATGCTCTTCGGGACTCAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
85678401 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
85678441 CCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
85678481 CCAGCACGAATGCTCTTCTTCGGGACTTAGCCCGAATATATCA
1 CCAGCACGAATG--C-TCTTCGGGACTTAGCCCGGATATATCA
* *
85678524 CCAGCACGAATGTTCTTCGGGACTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
85678564 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
85678604 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
85678641 ACATACTGAA
Statistics
Matches: 296, Mismatches: 20, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.04
40 246 0.83
42 1 0.00
43 37 0.12
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:85680709 original size:48 final size:48
Alignment explanation
Indices: 85680555--85680702 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 48
85680545 ATATATACAC
* **
85680555 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * * *
85680603 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
85680651 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
85680699 ATCT
1 ATCT
85680703 TGTACATCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:85693932 original size:27 final size:27
Alignment explanation
Indices: 85693902--85694079 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85693892 ATATTGAGTC
* * * *
85693902 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85693929 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85693956 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85693984 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85694011 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85694038 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85694065 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85694080 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85694041 original size:82 final size:81
Alignment explanation
Indices: 85693923--85694078 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85693913 TGCTATATAA
* *
85693923 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85693988 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85694005 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85694069 CACTTAGTGC
65 CACTTAGTGC
85694079 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85698854 original size:21 final size:21
Alignment explanation
Indices: 85698825--85698864 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
85698815 TGGGACAACT
85698825 GACTCATCATCT-CTCTTTGG
1 GACTCATCATCTGCTCTTTGG
*
85698845 GACTCCATCATTTGCTCTTT
1 GACT-CATCATCTGCTCTTT
85698865 CGTCTCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.15, C:0.30, G:0.12, T:0.42
Consensus pattern (21 bp):
GACTCATCATCTGCTCTTTGG
Found at i:85709557 original size:13 final size:13
Alignment explanation
Indices: 85709539--85709567 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85709529 GGTTGTTTAT
85709539 TAAACTAATTAAC
1 TAAACTAATTAAC
85709552 TAAACTAATTAAC
1 TAAACTAATTAAC
85709565 TAA
1 TAA
85709568 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:85714858 original size:64 final size:64
Alignment explanation
Indices: 85714675--85714882 Score: 199
Period size: 64 Copynumber: 3.2 Consensus size: 64
85714665 ATATAGTTCG
* * * * *
85714675 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTAT-CTCA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTATCACCCATGCGACCTAGCTACA-TATATCCT-G
85714736 TA
63 TA
* * * *
85714738 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATATATCCTG
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTATCACCCATGCGACCTAGCTACATATATCCTG
85714803 TA
63 TA
* *
85714805 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTATCACCCATGCGACCTAGCTACAT-AT-A--TCCT
85714870 GTA
62 GTA
85714873 GCTCTCTTGT
1 GCTCTCTTGT
85714883 ACACATGATG
Statistics
Matches: 119, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.15
64 29 0.24
65 2 0.02
66 23 0.19
67 26 0.22
68 20 0.17
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.33
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTATCACCCATGCGACCTAGCTACATATATCCTGTA
Found at i:85724297 original size:27 final size:26
Alignment explanation
Indices: 85724249--85724308 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
85724239 GCGAGGCTGC
* *
85724249 CAGATATTGTGACGAAGTCACCGGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
85724276 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
85724302 CAGATAT
1 CAGATAT
85724309 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:85724397 original size:27 final size:26
Alignment explanation
Indices: 85724349--85724408 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
85724339 GCGAGGCTGC
* *
85724349 CAGATATTGTGACGAAGTCACCGGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
85724376 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
85724402 CAGATAT
1 CAGATAT
85724409 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:85724410 original size:100 final size:100
Alignment explanation
Indices: 85724237--85724500 Score: 478
Period size: 100 Copynumber: 2.6 Consensus size: 100
85724227 ATAAAAATTG
85724237 CAGCGAGGCTGCCAGATATTGTGACGAAGTCACCGGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGCGAGGCTGCCAGATATTGTGACGAAGTCACCGGATACAGATATTGTGGCTAGGCCACCAGAA
85724302 CAGATATATATATATGTGGCGAAGCCACCAGATTA
66 CAGATATATATATATGTGGCGAAGCCACCAGATTA
85724337 CAGCGAGGCTGCCAGATATTGTGACGAAGTCACCGGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGCGAGGCTGCCAGATATTGTGACGAAGTCACCGGATACAGATATTGTGGCTAGGCCACCAGAA
85724402 CAGATATATATATATGTGGCGAAGCCACCAGATTA
66 CAGATATATATATATGTGGCGAAGCCACCAGATTA
* *
85724437 CAGCGAGGCTGCCAGATATTGTGGA-GAAGTCACCAGA-ACAGATATATGTGGCGAGGCCACCAG
1 CAGCGAGGCTGCCAGATATTGT-GACGAAGTCACCGGATACAGATAT-TGTGGCTAGGCCACCAG
85724500 A
64 A
85724501 TTGCAGCAAG
Statistics
Matches: 160, Mismatches: 2, Indels: 4
0.96 0.01 0.02
Matches are distributed among these distances:
99 8 0.05
100 150 0.94
101 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (100 bp):
CAGCGAGGCTGCCAGATATTGTGACGAAGTCACCGGATACAGATATTGTGGCTAGGCCACCAGAA
CAGATATATATATATGTGGCGAAGCCACCAGATTA
Found at i:85724497 original size:27 final size:26
Alignment explanation
Indices: 85724449--85724500 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
85724439 GCGAGGCTGC
*
85724449 CAGATATTGTGGAGAAGTCACCAGAA
1 CAGATATTGTGGAGAAGCCACCAGAA
* *
85724475 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGGAGAAGCCACCAGA
85724501 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.19, G:0.29, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGGAGAAGCCACCAGAA
Found at i:85730779 original size:43 final size:43
Alignment explanation
Indices: 85730723--85730837 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
85730713 GCTGGTGAAT
* * * *
85730723 AATATTATCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
** * *
85730766 GGTAATATCGGGCTTCGATCCTAGCAGGCTATAATACTGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
* * *
85730809 AATGATATCGGGCTTCAAGCCTAGTAGGC
1 AATAATATCGGGCTTCGAGCCTAGCAGGC
85730838 GAAATGCCAG
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
Found at i:85738589 original size:43 final size:43
Alignment explanation
Indices: 85738528--85738737 Score: 158
Period size: 43 Copynumber: 4.9 Consensus size: 43
85738518 AGAACATATA
* *
85738528 CAATGCCAAC-GTCCCAGACGTGGTCTTACACGTTATCAAACAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCAAACAT
* * * * * * *
85738571 TAATGCCACTGTCGCAGACACGCTCTTACACGAAATCAGATA-
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCAAACAT
* * * * *
85738613 CGATGCCAATGTCCCAGACATTGTCTTACACGTAAAACAGAA-GT
1 CAATGCCACTGTCCCAGACATGGTCTTACACGT-AATCA-AACAT
* * *
85738657 CGATGCCAAC-GTCCCAGACGTGGTCTTACACGTTATCAAACAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCAAACAT
* * * * *
85738700 TAATGCCACTGTCGCAGACACGCTCTTACACGAAATCA
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCA
85738738 CATATCAGAT
Statistics
Matches: 126, Mismatches: 34, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
42 31 0.25
43 65 0.52
44 29 0.23
45 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCAAACAT
Found at i:85745610 original size:14 final size:15
Alignment explanation
Indices: 85745591--85745621 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
85745581 TCAAAACAAG
85745591 AATTAAGAAC-ACAT
1 AATTAAGAACAACAT
85745605 AATTAAGAACAACAT
1 AATTAAGAACAACAT
85745620 AA
1 AA
85745622 ATATTTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (15 bp):
AATTAAGAACAACAT
Found at i:85745868 original size:69 final size:69
Alignment explanation
Indices: 85745757--85745895 Score: 251
Period size: 69 Copynumber: 2.0 Consensus size: 69
85745747 CATAAAGAAA
* *
85745757 ACCCAAAACTCCTGAAGGGGAATTGAGGAGAGATCTTTAGTCTTGATGATGAATCTGGCTTCTGA
1 ACCCAAAACTCCTGAAGGGGAATTGAGGAGAGATCTTTAGTCTTGATGATGAATCCGGCTTCTAA
85745822 GATG
66 GATG
*
85745826 ACCCAAAACTCCTGAAGGGGAATTGAGGAGAGATCTTTAGTCTTGATGATGAATCCGGCTTTTAA
1 ACCCAAAACTCCTGAAGGGGAATTGAGGAGAGATCTTTAGTCTTGATGATGAATCCGGCTTCTAA
85745891 GATG
66 GATG
85745895 A
1 A
85745896 ATCAATCGGC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (69 bp):
ACCCAAAACTCCTGAAGGGGAATTGAGGAGAGATCTTTAGTCTTGATGATGAATCCGGCTTCTAA
GATG
Found at i:85755905 original size:169 final size:169
Alignment explanation
Indices: 85755626--85755964 Score: 678
Period size: 169 Copynumber: 2.0 Consensus size: 169
85755616 CTTAGGAGAG
85755626 AATAGGAGAGCGAAAGGAACGAGAAACGGTCCAAAAACAGAGAAAATGGGCCAAAGTATGAAATC
1 AATAGGAGAGCGAAAGGAACGAGAAACGGTCCAAAAACAGAGAAAATGGGCCAAAGTATGAAATC
85755691 AACACAGCCTGGACTTCCTCACACGGGTAGACCACACGGCCGTGTCAATTTGTCAGATTCGAAGC
66 AACACAGCCTGGACTTCCTCACACGGGTAGACCACACGGCCGTGTCAATTTGTCAGATTCGAAGC
85755756 ACGATTCACACGGGCGTGTCACACGGGGTGTCCCTGCCA
131 ACGATTCACACGGGCGTGTCACACGGGGTGTCCCTGCCA
85755795 AATAGGAGAGCGAAAGGAACGAGAAACGGTCCAAAAACAGAGAAAATGGGCCAAAGTATGAAATC
1 AATAGGAGAGCGAAAGGAACGAGAAACGGTCCAAAAACAGAGAAAATGGGCCAAAGTATGAAATC
85755860 AACACAGCCTGGACTTCCTCACACGGGTAGACCACACGGCCGTGTCAATTTGTCAGATTCGAAGC
66 AACACAGCCTGGACTTCCTCACACGGGTAGACCACACGGCCGTGTCAATTTGTCAGATTCGAAGC
85755925 ACGATTCACACGGGCGTGTCACACGGGGTGTCCCTGCCA
131 ACGATTCACACGGGCGTGTCACACGGGGTGTCCCTGCCA
85755964 A
1 A
85755965 GCCCAAGTTG
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
169 170 1.00
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.15
Consensus pattern (169 bp):
AATAGGAGAGCGAAAGGAACGAGAAACGGTCCAAAAACAGAGAAAATGGGCCAAAGTATGAAATC
AACACAGCCTGGACTTCCTCACACGGGTAGACCACACGGCCGTGTCAATTTGTCAGATTCGAAGC
ACGATTCACACGGGCGTGTCACACGGGGTGTCCCTGCCA
Found at i:85757156 original size:100 final size:98
Alignment explanation
Indices: 85756976--85757302 Score: 411
Period size: 100 Copynumber: 3.3 Consensus size: 98
85756966 CCTATTGTGA
* * * * *
85756976 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTAGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTA
* * * *
85757041 CTAAGTGTAGGCTACTATGCGTACCCGATAACTT
66 CTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * *
85757075 CGATCACATGTGTAGTACTAAGTGCAAGCTAATACGTGTACCAAATAATTGGTCACATGTGTAGT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGT
* *
85757140 ACTAAGTGCAGGCTACTACGTGTACCGGATTATT
65 ACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
85757174 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACATGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACATGTGTAG
* * *
85757239 TACTAAGTGCAAGCTAATACGTGTACCAAATAATT
64 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
85757274 GGTCACATGTGTAGTACTAAGTGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
85757303 TCTATGCATA
Statistics
Matches: 196, Mismatches: 29, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
98 39 0.20
99 4 0.02
100 153 0.78
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (98 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:85757246 original size:149 final size:149
Alignment explanation
Indices: 85756976--85757302 Score: 618
Period size: 149 Copynumber: 2.2 Consensus size: 149
85756966 CCTATTGTGA
*
85756976 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTAGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTAGTCGCATGTGTAGTA
* *
85757041 CTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
66 CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
85757106 ATACGTGTACCAAATAATT
131 ATACGTGTACCAAATAATT
*
85757125 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTAGTCGCATGTGTAGTA
85757190 CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
66 CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
85757255 ATACGTGTACCAAATAATT
131 ATACGTGTACCAAATAATT
85757274 GGTCACATGTGTAGTACTAAGTGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
85757303 TCTATGCATA
Statistics
Matches: 174, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 174 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (149 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTAGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
ATACGTGTACCAAATAATT
Found at i:85757315 original size:49 final size:49
Alignment explanation
Indices: 85756976--85757302 Score: 411
Period size: 49 Copynumber: 6.6 Consensus size: 49
85756966 CCTATTGTGA
* * *
85756976 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
85757025 AGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * *
85757075 CGATCACATGTGTAGTACTAAGTGCAAGCTAATACGTGTACCAAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
85757125 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
85757174 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * *
85757224 CGATCACATGTGTAGTACTAAGTGCAAGCTAATACGTGTACCAAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
85757274 GGTCACATGTGTAGTACTAAGTGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
85757303 TCTATGCATA
Statistics
Matches: 235, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
49 151 0.64
50 8 0.03
51 76 0.32
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:85757360 original size:149 final size:148
Alignment explanation
Indices: 85756976--85757360 Score: 472
Period size: 149 Copynumber: 2.6 Consensus size: 148
85756966 CCTATTGTGA
* ** * * * * *
85756976 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTAGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATTATTGGTCACAAGTGTAGAA
* * * *
85757041 CTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
66 ATAAGTGCAGGCAAC-ATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
85757106 ATACGTGTACCAAATAATT
130 ATACGTGTACCAAATAATT
** * * * *
85757125 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATTATTGGTCACAAGTGTAGAA
* *
85757190 CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
66 ATAAGTGCAGGCAAC-ATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTA
85757255 ATACGTGTACCAAATAATT
130 ATACGTGTACCAAATAATT
* *
85757274 GGTCACATGTGTAGTACTAAGTGCAGGCTTCTATGCATACCAGA-TAGCTTTGG-CTACAAGTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATTA---TTGGTC-ACAAGTGT
*
85757337 -GAAAATATGTGCAGGCAAC-TGAGT
62 AG-AAATAAGTGCAGGCAACATGAGT
85757361 CTCAGTTATT
Statistics
Matches: 216, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
148 2 0.01
149 189 0.88
150 2 0.01
151 23 0.11
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (148 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATTATTGGTCACAAGTGTAGAA
ATAAGTGCAGGCAACATGAGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAGCTAA
TACGTGTACCAAATAATT
Found at i:85767508 original size:79 final size:79
Alignment explanation
Indices: 85767377--85767529 Score: 306
Period size: 79 Copynumber: 1.9 Consensus size: 79
85767367 AGTTCCTTTG
85767377 GGTTCGACAATCCGGTCTTGCTAAAAATATACTACTGTTCTATAGGTACACTTGCCTACATCGTG
1 GGTTCGACAATCCGGTCTTGCTAAAAATATACTACTGTTCTATAGGTACACTTGCCTACATCGTG
85767442 ATAATAGTTCTTAA
66 ATAATAGTTCTTAA
85767456 GGTTCGACAATCCGGTCTTGCTAAAAATATACTACTGTTCTATAGGTACACTTGCCTACATCGTG
1 GGTTCGACAATCCGGTCTTGCTAAAAATATACTACTGTTCTATAGGTACACTTGCCTACATCGTG
85767521 ATAATAGTT
66 ATAATAGTT
85767530 AGTTTCAAGA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 74 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (79 bp):
GGTTCGACAATCCGGTCTTGCTAAAAATATACTACTGTTCTATAGGTACACTTGCCTACATCGTG
ATAATAGTTCTTAA
Found at i:85772234 original size:49 final size:49
Alignment explanation
Indices: 85772181--85772286 Score: 178
Period size: 50 Copynumber: 2.1 Consensus size: 49
85772171 CTCAAAGACA
85772181 TGTTGA-GATGATGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTAC
1 TGTTGATGA-GATGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTAC
*
85772230 TGTTGATTGAGTTGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTAC
1 TGTTGA-TGAGATGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTAC
85772280 TGTTGAT
1 TGTTGAT
85772287 TGAGTTTGCG
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
49 7 0.13
50 45 0.83
51 2 0.04
ACGTcount: A:0.26, C:0.06, G:0.30, T:0.38
Consensus pattern (49 bp):
TGTTGATGAGATGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTAC
Found at i:85772247 original size:50 final size:50
Alignment explanation
Indices: 85772192--85772292 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
85772182 GTTGAGATGA
85772192 TGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTACTGTTGATTGAGT
1 TGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTACTGTTGATTGAGT
85772242 TGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTACTGTTGATTGAGT
1 TGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTACTGTTGATTGAGT
85772292 T
1 T
85772293 TGCGTATAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.26, C:0.06, G:0.30, T:0.39
Consensus pattern (50 bp):
TGTATTTTAGAGTTTGAGGGCAGTTGGGAAAAACTTACTGTTGATTGAGT
Found at i:85791632 original size:42 final size:42
Alignment explanation
Indices: 85791573--85791695 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
85791563 ACTAGGGTTA
* * *
85791573 ATGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGAT
1 ATGAGACTTCATGTAAGACCATATCTGGGATATGGCATCAAC
* * *
85791615 ATGAGACTTCATATAAGACCATAGCTGGGCTATTGGCATCAAC
1 ATGAGACTTCATGTAAGACCATATCTGGGATA-TGGCATCAAC
* * *
85791658 ACGAGA-TTGCATGTAAAACCATATCTGGAATATGGCAT
1 ATGAGACTT-CATGTAAGACCATATCTGGGATATGGCAT
85791696 TGGTATGGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 36 0.54
43 31 0.46
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (42 bp):
ATGAGACTTCATGTAAGACCATATCTGGGATATGGCATCAAC
Found at i:85796714 original size:22 final size:23
Alignment explanation
Indices: 85796675--85796727 Score: 83
Period size: 22 Copynumber: 2.4 Consensus size: 23
85796665 ATTTTCATCC
85796675 CTTAA-TTTTCACGATATTTTCT
1 CTTAACTTTTCACGATATTTTCT
*
85796697 CTTAACTTTT-ACGTTATTTTCT
1 CTTAACTTTTCACGATATTTTCT
85796719 CTTAACTTT
1 CTTAACTTT
85796728 CACATTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.21, C:0.19, G:0.04, T:0.57
Consensus pattern (23 bp):
CTTAACTTTTCACGATATTTTCT
Found at i:85801667 original size:17 final size:18
Alignment explanation
Indices: 85801645--85801678 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85801635 CTAACGTTTA
85801645 AATAATCAAATT-AATTT
1 AATAATCAAATTCAATTT
*
85801662 AATAATTAAATTCAATT
1 AATAATCAAATTCAATT
85801679 GGAGAAACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAATCAAATTCAATTT
Found at i:85803970 original size:17 final size:18
Alignment explanation
Indices: 85803922--85803972 Score: 50
Period size: 21 Copynumber: 2.7 Consensus size: 18
85803912 GAATAATTAC
*
85803922 AAAATAGAATTAAATCAAT
1 AAAATAGAAATAAATC-AT
*
85803941 ACAAAGTATAAATAAATC-T
1 A-AAA-TAGAAATAAATCAT
85803960 AAAATAGAAATAA
1 AAAATAGAAATAA
85803973 TTCAAGCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 8 0.30
18 3 0.11
19 3 0.11
20 3 0.11
21 10 0.37
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (18 bp):
AAAATAGAAATAAATCAT
Found at i:85805092 original size:137 final size:137
Alignment explanation
Indices: 85804846--85805130 Score: 489
Period size: 137 Copynumber: 2.1 Consensus size: 137
85804836 ATTGGGCCTT
**
85804846 AGCCCATTCAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTTA
1 AGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTTA
*
85804911 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCGGTAAAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
85804976 ATATGCA
131 ATATGCA
* *
85804983 AGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTTA
* * **
85805048 GCCCTTTATTCAGATAGCAGTATGGCCCATAGGCCCATTTCAAAATACATTTAACATCAGTAAAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
85805113 ATATGCA
131 ATATGCA
85805120 AGCCCATTTGG
1 AGCCCATTTGG
85805131 AGAGACTACT
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 139 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (137 bp):
AGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
ATATGCA
Found at i:85806060 original size:56 final size:56
Alignment explanation
Indices: 85805982--85806093 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
85805972 CACATAATCA
85805982 TAATTTCACTGCAAGCTATCTTCCTGAGCAACAGTTACTAAATCATTTATAACTGG
1 TAATTTCACTGCAAGCTATCTTCCTGAGCAACAGTTACTAAATCATTTATAACTGG
* * *
85806038 TAATTTCACTGCAAGTTGTCTTCCTGAGCAACAGTTACTAAGTCATTTATAACTGG
1 TAATTTCACTGCAAGCTATCTTCCTGAGCAACAGTTACTAAATCATTTATAACTGG
85806094 AGCTACGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (56 bp):
TAATTTCACTGCAAGCTATCTTCCTGAGCAACAGTTACTAAATCATTTATAACTGG
Found at i:85807005 original size:26 final size:26
Alignment explanation
Indices: 85806974--85807081 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
85806964 TGAAATGCCC
85806974 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
85807000 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
85807026 ATCATGGAATATTTACCTAATA-CATT
1 ATCATGGAACATTTACCTAA-ACCATT
*
85807052 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
85807078 ATCA
1 ATCA
85807082 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:85807052 original size:52 final size:52
Alignment explanation
Indices: 85806974--85807081 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
85806964 TGAAATGCCC
85806974 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
85807026 ATCATGGAATATTTACCTAATA-CATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-ACCATTATCATGGAACATTTACCTAACCCATT
85807078 ATCA
1 ATCA
85807082 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
52 53 0.98
53 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:85808598 original size:27 final size:27
Alignment explanation
Indices: 85808567--85808622 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
85808557 CTCAGCTTTC
*
85808567 ACTTGCTAGCATGTCTGACATTTCCCT
1 ACTTGCTAGCATGTCAGACATTTCCCT
*
85808594 ACTTGCTGGCATGTCAGACATTTCCCT
1 ACTTGCTAGCATGTCAGACATTTCCCT
85808621 AC
1 AC
85808623 AAACTCTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (27 bp):
ACTTGCTAGCATGTCAGACATTTCCCT
Done.