Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 260 of 310
Found at i:85812217 original size:39 final size:40
Alignment explanation
Indices: 85812117--85812341 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
85812107 TTGAATGATG
* * * *
85812117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
85812157 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
85812197 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85812236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
85812276 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
85812317 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85812342 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85812363 original size:119 final size:119
Alignment explanation
Indices: 85812117--85812374 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
85812107 TTGAATGATG
* * *
85812117 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGATTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATTT
* ** *
85812182 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * *
85812236 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACAAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAAAATCCGGATTAAGAT-CCGAAGGCAT
* * * *
85812299 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
85812356 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
85812375 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACAAAATCCGGATTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:85815562 original size:137 final size:137
Alignment explanation
Indices: 85815316--85816287 Score: 1917
Period size: 137 Copynumber: 7.1 Consensus size: 137
85815306 CATTGGGCCT
** *
85815316 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85815381 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85815446 CATATGC
131 CATATGC
85815453 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85815518 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85815583 CATATGC
131 CATATGC
85815590 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85815655 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85815720 CATATGC
131 CATATGC
85815727 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85815792 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85815857 CATATGC
131 CATATGC
85815864 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85815929 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85815994 CATATGC
131 CATATGC
85816001 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85816066 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85816131 CATATGC
131 CATATGC
85816138 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85816203 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85816268 CATATGC
131 CATATGC
85816275 AAGCCCATTTGGG
1 AAGCCCATTTGGG
85816288 GAGACTACTC
Statistics
Matches: 832, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 832 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:85819781 original size:30 final size:30
Alignment explanation
Indices: 85819713--85819788 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
85819703 TAACTTACCA
* *
85819713 CCTTTAAAATTTTTAAAATTGTACTTTAAT
1 CCTTTAAAATTTATAAAATTGTAATTTAAT
**
85819743 CCCCTAAAATTTATAATAATT-TAATTTAAT
1 CCTTTAAAATTTATAA-AATTGTAATTTAAT
*
85819773 CTTTTAAAA-TTATAAA
1 CCTTTAAAATTTATAAA
85819789 GATGACTACT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 1 0.03
29 6 0.16
30 27 0.71
31 4 0.11
ACGTcount: A:0.42, C:0.11, G:0.01, T:0.46
Consensus pattern (30 bp):
CCTTTAAAATTTATAAAATTGTAATTTAAT
Found at i:85820780 original size:18 final size:20
Alignment explanation
Indices: 85820754--85820804 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 20
85820744 ATATATAAAA
85820754 TTTGAAATTTTTATAAA-TAT
1 TTTG-AATTTTTATAAATTAT
*
85820774 TTT-AA-TTTTAAAAATTAT
1 TTTGAATTTTTATAAATTAT
85820792 TTTGAATTTTTAT
1 TTTGAATTTTTAT
85820805 TTTATTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 8 0.31
18 8 0.31
19 2 0.08
20 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (20 bp):
TTTGAATTTTTATAAATTAT
Found at i:85835337 original size:27 final size:27
Alignment explanation
Indices: 85835306--85835483 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85835296 TAAATTGTAC
85835306 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
85835333 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85835359 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
85835387 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
85835415 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85835442 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
85835469 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85835484 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:85835420 original size:82 final size:81
Alignment explanation
Indices: 85835307--85835462 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85835297 AAATTGTACA
* *
85835307 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85835371 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85835388 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85835453 TGCGAGTTGA
65 TGCGAATTGA
85835463 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85835474 original size:82 final size:81
Alignment explanation
Indices: 85835303--85835483 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
85835293 GATTAAATTG
* *
85835303 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85835368 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
85835384 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85835448 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85835466 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85835484 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85835959 original size:10 final size:10
Alignment explanation
Indices: 85835936--85835995 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
85835926 ATTTTAGGAT
* *
85835936 TTATTTTCAT
1 TTATTTTTAA
85835946 TTATTTTTAA
1 TTATTTTTAA
*
85835956 TTATCTTTAA
1 TTATTTTTAA
*
85835966 TTATCTTTAA
1 TTATTTTTAA
* *
85835976 TTATTTGTAT
1 TTATTTTTAA
85835986 TTATCTTTTA
1 TTAT-TTTTA
85835996 GAATTTAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
10 38 0.90
11 4 0.10
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:85835969 original size:20 final size:20
Alignment explanation
Indices: 85835936--85835993 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
85835926 ATTTTAGGAT
* *
85835936 TTATTTTCATTTATTTTTAA
1 TTATTTTTATTTATCTTTAA
* *
85835956 TTATCTTTAATTATCTTTAA
1 TTATTTTTATTTATCTTTAA
*
85835976 TTATTTGTATTTATCTTT
1 TTATTTTTATTTATCTTT
85835994 TAGAATTTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (20 bp):
TTATTTTTATTTATCTTTAA
Found at i:85836452 original size:18 final size:18
Alignment explanation
Indices: 85836429--85836468 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
85836419 GTCCAAGAGA
85836429 GTTAAATAACTCACAAAT
1 GTTAAATAACTCACAAAT
85836447 GTTAAATAACTCACAAAT
1 GTTAAATAACTCACAAAT
85836465 GTTA
1 GTTA
85836469 TAAATATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.30
Consensus pattern (18 bp):
GTTAAATAACTCACAAAT
Found at i:85837246 original size:52 final size:51
Alignment explanation
Indices: 85837189--85837320 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
85837179 ATGAACAAAT
*
85837189 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGG
* * * *
85837241 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAATTTACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGG
* *
85837291 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
85837321 CAAAACACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 33 0.47
51 14 0.20
52 23 0.33
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGG
Found at i:85841221 original size:39 final size:40
Alignment explanation
Indices: 85841017--85841239 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
85841007 TTGAATGCTG
* * * * * *
85841017 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
85841057 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
85841097 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
85841137 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
85841177 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
85841216 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
85841240 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:85841259 original size:79 final size:80
Alignment explanation
Indices: 85841092--85841274 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
85841082 GTGCGAGATA
* * *
85841092 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
85841157 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
85841172 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
85841236 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
85841251 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
85841275 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:85859163 original size:46 final size:45
Alignment explanation
Indices: 85858955--85859268 Score: 202
Period size: 46 Copynumber: 6.6 Consensus size: 45
85858945 GGCAAGTTAT
* *
85858955 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTATCATCACCGAGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTCA-CGAGGC
* * * * * *
85859004 TGATGTCATGTCCCAAACATGGTCTTACACTAGCTCTC-ACATATCCATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTC--A-CGAGGC
* * * * ***
85859054 CGATGCCATGTCCCAGACACGGTCTTACACTGAC-ACATTTTGTA-GC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTCGTCACG-AGGC
*
85859100 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCACGAGGC
* * * * * * *
85859146 CAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCACGAGGC
* * * *
85859192 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTCACGAGGC
85859240 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
85859269 AGCCCACAAT
Statistics
Matches: 206, Mismatches: 47, Indels: 27
0.74 0.17 0.10
Matches are distributed among these distances:
44 12 0.06
45 14 0.07
46 63 0.31
47 29 0.14
48 24 0.12
49 32 0.16
50 32 0.16
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCACGAGGC
Found at i:85859217 original size:94 final size:92
Alignment explanation
Indices: 85859098--85859271 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 92
85859088 ACATTTTGTA
* ** *
85859098 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCCCGAGGCCAATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAACGAGGCCAATGCATGTCCCAGA
85859162 CATGTCTTACACTAGCACTCGTCTCAAT
65 CATGTCTTACACTAGCACTCGTCTCAAT
* * *
85859190 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAACGAGGCCAATGCATGTCCCAG
85859255 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
85859272 CCACAATAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 7 0.10
93 14 0.19
94 50 0.69
95 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGAGGCCAATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:85859259 original size:140 final size:142
Alignment explanation
Indices: 85858955--85859268 Score: 395
Period size: 140 Copynumber: 2.2 Consensus size: 142
85858945 GGCAAGTTAT
* **
85858955 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTATCATCACCGAGGCTGATGTCATGTCCCAA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCACCGAGGCCAATGTCATGTCCCAA
* *
85859020 ACATGGTCTTACACTAGCTCTCACATATCCATGCCGATGCCATGTCCCAGACACGGTCTTACACT
64 ACATGGTCTTACACTAGCACT-ACATATCAATGCCGATGCCATGTCCCAGACACGGTCTTACACT
**
85859085 GACACATTTTGTAGC
128 GACACATAATGTAGC
* * *
85859100 CGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTC-CCGAGGCCAATG-CATGTCCTAGA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTAT-CATCACCGAGGCCAATGTCATGTCCCAAA
* * *
85859162 CAT-GTCTTACACTAGCACT-CGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
65 CATGGTCTTACACTAGCACTACATATCAATGCCGATGCCATGTCCCAGACACGGTCTTACACT-G
* * *
85859225 CTCTCATAATGTGGC
129 -ACACATAATGTAGC
85859240 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
85859269 AGCCCACAAT
Statistics
Matches: 150, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
138 38 0.25
139 1 0.01
140 53 0.35
141 12 0.08
142 11 0.07
143 16 0.11
144 14 0.09
145 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (142 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCACCGAGGCCAATGTCATGTCCCAAAC
ATGGTCTTACACTAGCACTACATATCAATGCCGATGCCATGTCCCAGACACGGTCTTACACTGAC
ACATAATGTAGC
Found at i:85861106 original size:954 final size:955
Alignment explanation
Indices: 85859141--85861679 Score: 4570
Period size: 954 Copynumber: 2.7 Consensus size: 955
85859131 CTTACGTCCC
*
85859141 GAGGCCAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCC
1 GAGGCTAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCC
85859206 AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
66 AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
85859271 CCCACAATAACCCATATGTCATGGCATGAATATCCGATTTATTTCCTAGGTTCAAACGGGAACTC
131 CCCACAATAACCCATATGTCATGGCATGAATATCCGATTTATTTCCTAGGTTCAAACGGGAACTC
85859336 TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGCTAATTT
196 TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGCTAATTT
85859401 CAAGTATAATTCAGTACATACATCAACAATGTAGTTGTATTATTTATATACAACTTACCTCGGAT
261 CAAGTATAATTCAGTACATACATCAACAATGTAGTTGTATTATTTATATACAACTTACCTCGGAT
85859466 TACAAAAATGTACACGACTAGTCGGTTTAGTCGATTTGCTTAGCTTTCTCTCGGTCTTGGTTCAG
326 TACAAAAATGTACACGACTAGTCGGTTTAGTCGATTTGCTTAGCTTTCTCTCGGTCTTGGTTCAG
*
85859531 AGTTGGAAATTCTTGATCTATATTGGGAAAATACACTCATTTACTCACTCATCACAATTAGGCAA
391 AGTTGGAAATTCTTGATCTATATTGGAAAAATACACTCATTTACTCACTCATCACAATTAGGCAA
85859596 TTGAAAATTAACATATTCGGTAAAATGACCATTTGCCCC-AAACTTTGGCAAAATGACCATTTTA
456 TTGAAAATTAACATATTCGGTAAAATGACCATTTGCCCCTAAACTTTGGCAAAATGACCATTTTA
85859660 CCCTATGCTCGAAAATCGATTTTTATCAATTTTTTTTGCATCTTAAGCTTAACTAAACCATTTTT
521 CCCTATGCTCGAAAATCGATTTTTATCAATTTTTTTTGCATCTTAAGCTTAACTAAACCATTTTT
85859725 ACTCTTACAGAAACTCCAAATTCTCTCTATTTCACACACTTATCACTTATTTTGCTACTTGTGCA
586 ACTCTTACAGAAACTCCAAATTCTCTCTATTTCACACACTTATCACTTATTTTGCTACTTGTGCA
85859790 AAATAGTCCCTTTAGGTGTTTTCATGCTAACACCTTTCACAAAAGTTGTTTATAAGACAAATAAG
651 AAATAGTCCCTTTAGGTGTTTTCATGCTAACACCTTTCACAAAAGTTGTTTATAAGACAAATAAG
85859855 ACTCATTTTCTTCCATGAAAACTCAGCAGGCAACACAAATCCTTTCATATTAAAACCCTAAACTC
716 ACTCATTTTCTTCCATGAAAACTCAGCAGGCAACACAAATCCTTTCATATTAAAACCCTAAACTC
85859920 TTGATCATTTTGCAAGATAGCACCCTCATTTGAAAGCTCATGCTTCAAGGGTCTCAAAAGTACAA
781 TTGATCATTTTGCAAGATAGCACCCTCATTTGAAAGCTCATGCTTCAAGGGTCTCAAAAGTACAA
85859985 AAATCATCAACAAAGGTCATGAAATTCACTTACATGTGAGTGCTTCAATTTTTGAAAATTTTAAG
846 AAATCATCAACAAAGGTCATGAAATTCACTTACATGTGAGTGCTTCAATTTTTGAAAATTTTAAG
85860050 CTCTCAAACCCTTTACAATGGCTGATGTCCCAAATCATCAACCCT
911 CTCTCAAACCCTTTACAATGGCTGATGTCCCAAATCATCAACCCT
85860095 GAGGCTAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCC
1 GAGGCTAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCC
85860160 AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
66 AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
*
85860225 CCCACAATAACCCATATGTCATGGCATGAATATCTGATTTATTTCCTAGGTTCAAACGGGAACTC
131 CCCACAATAACCCATATGTCATGGCATGAATATCCGATTTATTTCCTAGGTTCAAACGGGAACTC
85860290 TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGCTAATTT
196 TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGCTAATTT
85860355 CAAGTATAATTCAGTACATACATCAACAATGTAGTTGTATTATTTATATACAACTTACCTCGGAT
261 CAAGTATAATTCAGTACATACATCAACAATGTAGTTGTATTATTTATATACAACTTACCTCGGAT
85860420 TACAAAAATGTACACGACTAGTCGGTTTAGTCGATTTGCTTAGCTTTCTCTCGGTCTTGGTTCAG
326 TACAAAAATGTACACGACTAGTCGGTTTAGTCGATTTGCTTAGCTTTCTCTCGGTCTTGGTTCAG
85860485 AGTTGGAAATTCTTGATCTATATTGGAAAAATACACTCATTTACTCACTCATCACAATTAGGCAA
391 AGTTGGAAATTCTTGATCTATATTGGAAAAATACACTCATTTACTCACTCATCACAATTAGGCAA
* *
85860550 TTGAAAATTAACATCTTCGGTAAAATAACCATTTGCCCCTAAACTTTGGCAAAATGACCATTTTA
456 TTGAAAATTAACATATTCGGTAAAATGACCATTTGCCCCTAAACTTTGGCAAAATGACCATTTTA
85860615 CCCTATGCTCGAAAATCGATTTTTATCAATTTTTTTTGCATCTTAAGCTTAACTAAACCATTTTT
521 CCCTATGCTCGAAAATCGATTTTTATCAATTTTTTTTGCATCTTAAGCTTAACTAAACCATTTTT
85860680 ACTCTTACAGAAACTCCAAATTCTCTCTATTTCACACACTTATCACTTATTTTGCTACTTGTGCA
586 ACTCTTACAGAAACTCCAAATTCTCTCTATTTCACACACTTATCACTTATTTTGCTACTTGTGCA
85860745 AAATAGTCCCTTTAGGTGTTTTCATGCTAACACCTTTCACAAAAGTTGTTTATAAGACAAATAAG
651 AAATAGTCCCTTTAGGTGTTTTCATGCTAACACCTTTCACAAAAGTTGTTTATAAGACAAATAAG
85860810 ACTCATTTTCTTCCATGAAAACTCAGCAGGCAACACAAATCCTTTCATATTAAAACCCTAAACTC
716 ACTCATTTTCTTCCATGAAAACTCAGCAGGCAACACAAATCCTTTCATATTAAAACCCTAAACTC
** *
85860875 TTGATCATTTTGCAAGATAGCACTGTCATTTGAAATCTCATGCTTCAAGGGTCTCAAAAGTACAA
781 TTGATCATTTTGCAAGATAGCACCCTCATTTGAAAGCTCATGCTTCAAGGGTCTCAAAAGTACAA
85860940 AAATCATCAACAAAGGTCATGAAATTCACTTACATGTGAGTGCTTCAATTTTTGAAAATTTTAAG
846 AAATCATCAACAAAGGTCATGAAATTCACTTACATGTGAGTGCTTCAATTTTTGAAAATTTTAAG
85861005 CTCTCAAACCCTTTACAATGGCTGATGTCCCAAATCATCAACCCT
911 CTCTCAAACCCTTTACAATGGCTGATGTCCCAAATCATCAACCCT
* * *
85861050 GAGGCTAATGCATGTCCTAGACATGTCTTACACTAGCACTCATCTTAGTG-CGATGCCATGTCCC
1 GAGGCTAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCC
* * * * *
85861114 A-AAATGGTCTTACACTGGCTCTCATAATGTGTCTGATGCATGTCCTAGACAAGTCTTACACTAG
66 AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
* *
85861178 CCCACAATAGCCCATATGTCATGGCATGAATATCCGATTTATTTTCTAGGTTCAAACGGGAACTC
131 CCCACAATAACCCATATGTCATGGCATGAATATCCGATTTATTTCCTAGGTTCAAACGGGAACTC
*
85861243 TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGTTAATTT
196 TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGCTAATTT
* *
85861308 CAAGTATAATTCAGTACATACATCAACACTGTAGTTGTATTA-TT-TATACAACTTACCTCAGAT
261 CAAGTATAATTCAGTACATACATCAACAATGTAGTTGTATTATTTATATACAACTTACCTCGGAT
* * * * *
85861371 TACAAAACA--TACACGACTAGTCAGTTTAGTCGATTTGCTTGGTTTTCCCTTGGTCTTGGTTCA
326 TACAAAA-ATGTACACGACTAGTCGGTTTAGTCGATTTGCTTAGCTTTCTCTCGGTCTTGGTTCA
* * * *
85861434 GAGTTGGAAATTCTTGATCTATATTGGAAAAATACACTCATTTAGTCACTAATAACAATTAGACA
390 GAGTTGGAAATTCTTGATCTATATTGGAAAAATACACTCATTTACTCACTCATCACAATTAGGCA
* * * * * *
85861499 ATTGAAAATTCACATATTTGGTAATATGACCATTTTGCCCCTAGACTTTGGCAAAATGTCTATTT
455 ATTGAAAATTAACATATTCGGTAAAATGACCA-TTTGCCCCTAAACTTTGGCAAAATGACCATTT
* * * * * ** * **
85861564 TACTGCTATGCTCGAAAATCAATTTTTATCGAGTTTCTTCACATCTTAAGATTAACTAAACCCGT
519 TAC-CCTATGCTCGAAAATCGATTTTTATCAATTTTTTTTGCATCTTAAGCTTAACTAAACCATT
* *
85861629 TTTACTCTTATAGCAACTCCAAATTCTCTCTATTTCACACACTTATCACTT
583 TTTACTCTTACAGAAACTCCAAATTCTCTCTATTTCACACACTTATCACTT
85861680 CTCTCTAACA
Statistics
Matches: 1530, Mismatches: 51, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
950 137 0.09
951 57 0.04
952 103 0.07
953 225 0.15
954 504 0.33
955 504 0.33
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (955 bp):
GAGGCTAATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCC
AGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
CCCACAATAACCCATATGTCATGGCATGAATATCCGATTTATTTCCTAGGTTCAAACGGGAACTC
TGCTATCTCTATTATCATCATGCTTTCTCAATTCCAAAATCAAGCAATTCATGCTATGCTAATTT
CAAGTATAATTCAGTACATACATCAACAATGTAGTTGTATTATTTATATACAACTTACCTCGGAT
TACAAAAATGTACACGACTAGTCGGTTTAGTCGATTTGCTTAGCTTTCTCTCGGTCTTGGTTCAG
AGTTGGAAATTCTTGATCTATATTGGAAAAATACACTCATTTACTCACTCATCACAATTAGGCAA
TTGAAAATTAACATATTCGGTAAAATGACCATTTGCCCCTAAACTTTGGCAAAATGACCATTTTA
CCCTATGCTCGAAAATCGATTTTTATCAATTTTTTTTGCATCTTAAGCTTAACTAAACCATTTTT
ACTCTTACAGAAACTCCAAATTCTCTCTATTTCACACACTTATCACTTATTTTGCTACTTGTGCA
AAATAGTCCCTTTAGGTGTTTTCATGCTAACACCTTTCACAAAAGTTGTTTATAAGACAAATAAG
ACTCATTTTCTTCCATGAAAACTCAGCAGGCAACACAAATCCTTTCATATTAAAACCCTAAACTC
TTGATCATTTTGCAAGATAGCACCCTCATTTGAAAGCTCATGCTTCAAGGGTCTCAAAAGTACAA
AAATCATCAACAAAGGTCATGAAATTCACTTACATGTGAGTGCTTCAATTTTTGAAAATTTTAAG
CTCTCAAACCCTTTACAATGGCTGATGTCCCAAATCATCAACCCT
Found at i:85861170 original size:46 final size:45
Alignment explanation
Indices: 85861057--85861178 Score: 124
Period size: 46 Copynumber: 2.7 Consensus size: 45
85861047 CCTGAGGCTA
* **
85861057 ATGCATGTCCTAGACATGTCTTACACTAGCACTCATCTTAGTGCG
1 ATGCATGTCCTAGACAAGTCTTACACTAGCACTCATAATAGTGCG
* * *
85861102 ATGCCATGTCCCA-A-AATGGTCTTACACTGGCTCTCATAAT-GTGTCTG
1 ATG-CATGTCCTAGACAA--GTCTTACACTAGCACTCATAATAGTG-C-G
85861149 ATGCATGTCCTAGACAAGTCTTACACTAGC
1 ATGCATGTCCTAGACAAGTCTTACACTAGC
85861179 CCACAATAGC
Statistics
Matches: 62, Mismatches: 8, Indels: 13
0.75 0.10 0.16
Matches are distributed among these distances:
44 1 0.02
45 7 0.11
46 47 0.76
47 5 0.08
48 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (45 bp):
ATGCATGTCCTAGACAAGTCTTACACTAGCACTCATAATAGTGCG
Found at i:85868507 original size:50 final size:49
Alignment explanation
Indices: 85868385--85868704 Score: 165
Period size: 46 Copynumber: 6.8 Consensus size: 49
85868375 CGGGACAAGT
* *
85868385 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTATCATCACCGA
* ** * * *
85868434 AGATGATGCCATGTCCGAAACATGGTCTTAAACTAGCTCTCA-CATATCC-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTATCATC--A-CCGA
* * ***
85868484 TGCCGATTCCATGTCCCAGACATGGTCTTACACT-GAC-A-CAT-TTTG-
1 TGCCGATGCCATGTCCCAGACATGGTCTTAAACTAG-CTATCATCACCGA
* * *
85868529 TAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTC-CCGA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTAT-CATCACCGA
* * * * * *
85868576 GGCCGATG-CATGTCCTAGACAT-GTCTTACACTAGC-ACTCGTC-TCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTA-TCATCACCGA
* * * * **
85868622 TGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATG-
1 TGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTATCATCACCGA
* *
85868669 TGGCCGAT-ACATGTCCCAGACAT-GTCTTACACTAGC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTAAACTAGC
85868705 CCACAATAAC
Statistics
Matches: 212, Mismatches: 39, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
44 11 0.05
45 16 0.08
46 65 0.31
47 29 0.14
48 24 0.11
49 35 0.17
50 30 0.14
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTATCATCACCGA
Found at i:85868596 original size:46 final size:45
Alignment explanation
Indices: 85868531--85868701 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 45
85868521 ACATTTTGTA
*
85868531 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCACGAG
* * * * * *
85868577 GCCGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCACGAG
* * * * *
85868623 GCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTGGCT-TCGTCACGAG
*
85868671 GCCGATACATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
85868702 AGCCCACAAT
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 54 0.52
47 28 0.27
48 21 0.20
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCACGAG
Found at i:85868694 original size:140 final size:142
Alignment explanation
Indices: 85868394--85868701 Score: 374
Period size: 140 Copynumber: 2.2 Consensus size: 142
85868384 TTGCCGATGC
*
85868394 CATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGATGATGCCATGTCCGAAACATGG
1 CATGTCCCAGACAT-GTCTTACACTGGCTATCATCACCGAAGACGATGCCATGTCCGAAACATGG
* * *
85868459 TCTTAAACTAGCTCTCACATATCCATGCCGATTCCATGTCCCAGACATGGTCTTACACTGACACA
65 TCTTAAACTAGCACT-ACATATCAATGCCGATACCATGTCCCAGACATGGTCTTACACTGACACA
** *
85868524 TTTTGTAGCCGATG
129 TAATGTAGCCGATA
* * * * *
85868538 CATGTCCCAGACATGTCTTACACTGGCT-TACGTC-CCGAGGCCGATG-CATGTCCTAGACAT-G
1 CATGTCCCAGACATGTCTTACACTGGCTAT-CATCACCGAAGACGATGCCATGTCCGAAACATGG
* * * * *
85868599 TCTTACACTAGCACT-CGTCTCAATGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTC
65 TCTTAAACTAGCACTACATATCAATGCCGATACCATGTCCCAGACATGGTCTTACACT-G-ACAC
*
85868663 ATAATGTGGCCGATA
128 ATAATGTAGCCGATA
85868678 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
85868702 AGCCCACAAT
Statistics
Matches: 143, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
138 38 0.27
139 1 0.01
140 51 0.36
141 12 0.08
142 10 0.07
143 17 0.12
144 14 0.10
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (142 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATCACCGAAGACGATGCCATGTCCGAAACATGGT
CTTAAACTAGCACTACATATCAATGCCGATACCATGTCCCAGACATGGTCTTACACTGACACATA
ATGTAGCCGATA
Found at i:85870610 original size:46 final size:46
Alignment explanation
Indices: 85870527--85870643 Score: 121
Period size: 46 Copynumber: 2.5 Consensus size: 46
85870517 AAGTAAAAGC
*
85870527 CATGTCCCAGACATGGTCTTACATTGACTACCATCTCGTA-GCCAACG
1 CATGTCCCAGACAT-GTCTTACACTGACTACCATCTCG-AGGCCAACG
* ** * * *
85870574 CATGTCCCAGACATGTCTTACACTGGCTTA-TGTCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGAC-TACCATCTCGAGGCCAACG
*
85870620 CATGTCCCAGACACGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
85870644 AGCACTCATC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.02
46 43 0.72
47 16 0.27
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTACCATCTCGAGGCCAACG
Found at i:85880075 original size:47 final size:47
Alignment explanation
Indices: 85880022--85880145 Score: 221
Period size: 47 Copynumber: 2.6 Consensus size: 47
85880012 CGCCCATAAG
* *
85880022 CGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
85880069 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
*
85880116 CGAACTCGAACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
85880146 CGTTCGCATG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85881978 original size:47 final size:46
Alignment explanation
Indices: 85881909--85882222 Score: 189
Period size: 47 Copynumber: 6.7 Consensus size: 46
85881899 GGGGTATGGT
* * *
85881909 GTCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCCTATCTCCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCATATCTCAA
**
85881956 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTTGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCAT-ATC-TCAA
* * * *
85882004 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGATCATATATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCATATCTCAA
* * * *
85882049 GTCGATTCCATGTCCCAAACATGGTCTTACACTGACT-ATCATTTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTG-CTCAT-ATCTC-AA
* * * * * ** *
85882097 GCCAATG-CATGTCCCAGACAT-GTTTTACACCAGCTTACGTCTCGA
1 GTCGATGCCATGTCCCAGACATGGTCTTACA-CTGCTCATATCTCAA
* * * * *
85882142 GACCGATG-CATGTCCCAAACAT-GTCTTACACTAGCAC-TCCTCTCGA
1 G-TCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCAT-ATCTCAA
*
85882188 -TGCTGATGCAATGTCCCAGACATGGTCTTACACTG
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTG
85882223 ACTCTCGTAA
Statistics
Matches: 210, Mismatches: 38, Indels: 38
0.73 0.13 0.13
Matches are distributed among these distances:
45 11 0.05
46 79 0.38
47 97 0.46
48 23 0.11
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGCTCATATCTCAA
Found at i:85882077 original size:93 final size:93
Alignment explanation
Indices: 85881911--85882221 Score: 301
Period size: 93 Copynumber: 3.3 Consensus size: 93
85881901 GGTATGGTGT
* * * * * *
85881911 CGATGCCATGTCCCAGACATGGTCTTACAATAGCTCCTATCTCCAGTCGATGCCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGATCATATATCAAGTCGATGCCATGTCCCAAAC
85881976 ATGGTCTTACACTGACTATCATCTT-GTAGC
64 ATGGTCTTACACTGACTATCAT-TTCGTAGC
* * *
85882006 CGATGCATGTCCTAGACATGTCTTACACTGGATCATATATCAAGTCGATTCCATGTCCCAAACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGATCATATATCAAGTCGATGCCATGTCCCAAACAT
85882071 GGTCTTACACTGACTATCATTTCGTAGC
66 GGTCTTACACTGACTATCATTTCGTAGC
* * * * * ** * * *
85882099 CAATGCATGTCCCAGACATGTTTTACACCAGCTTACGTCTCGAGACCGATG-CATGTCCCAAACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGATCATATATCAAG-TCGATGCCATGTCCCAAACA
* *
85882163 T-GTCTTACACT-AGC-ACTCCTCTCG-ATGC
65 TGGTCTTACACTGA-CTA-TCATTTCGTA-GC
*
85882191 TGATGCAATGTCCCAGACATGGTCTTACACT
1 CGATGC-ATGTCCCAGACAT-GTCTTACACT
85882222 GACTCTCGTA
Statistics
Matches: 181, Mismatches: 28, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
91 3 0.02
92 25 0.14
93 123 0.68
94 25 0.14
95 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGATCATATATCAAGTCGATGCCATGTCCCAAACAT
GGTCTTACACTGACTATCATTTCGTAGC
Found at i:85882153 original size:46 final size:46
Alignment explanation
Indices: 85882101--85882220 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
85882091 TTCGTAGCCA
* * *
85882101 ATGCATGTCCCAGACATGTTTTACACCAGC-TTACGTCTCGA-GACCG
1 ATGCATGTCCCAGACATGTCTTACACCAGCACT-CCTCTCGATG-CCG
* * *
85882147 ATGCATGTCCCAAACATGTCTTACACTAGCACTCCTCTCGATGCTG
1 ATGCATGTCCCAGACATGTCTTACACCAGCACTCCTCTCGATGCCG
85882193 ATGCAATGTCCCAGACATGGTCTTACAC
1 ATGC-ATGTCCCAGACAT-GTCTTACAC
85882221 TGACTCTCGT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 40 0.63
47 14 0.22
48 9 0.14
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACCAGCACTCCTCTCGATGCCG
Found at i:85887883 original size:67 final size:67
Alignment explanation
Indices: 85887800--85887965 Score: 287
Period size: 67 Copynumber: 2.5 Consensus size: 67
85887790 ACCTAGTCAC
* * *
85887800 TTTATCTCATAGCTCTCTTGTTTACATGGTTTCCTTCACCCGGAACCACACATGCAACCTAGCTA
1 TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCATTCACCCGGAACCACACATGCAACCTAGCTA
85887865 CA
66 CA
*
85887867 TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCATTCACCTGGAACCACACATGCAACCTAGCTA
1 TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCATTCACCCGGAACCACACATGCAACCTAGCTA
85887932 CA
66 CA
*
85887934 TTTATCTCGTAGCTCTCTTGTCTACATGGTGT
1 TTTATCTCGTAGCTCTCTTGTTTACATGGTGT
85887966 ACACATAGTA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 94 1.00
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (67 bp):
TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCATTCACCCGGAACCACACATGCAACCTAGCTA
CA
Found at i:85888021 original size:68 final size:64
Alignment explanation
Indices: 85887748--85888036 Score: 228
Period size: 67 Copynumber: 4.4 Consensus size: 64
85887738 CATAATTTTG
* * * * ** *
85887748 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAG-T-CACTTTATCTCAT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACACATGCAACCTAGCTACA-TTTATCTCGT
85887810 A
64 A
* * * ***
85887811 GCTCTCTTGTTTACATGGTTTCCTTCACCCGGAACCACACATGCAACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGG--T-GTACACATAGAACCACACATGCAACCTAGCTACATTTATCTCG
85887876 TA
63 TA
* * *
85887878 GCTCTCTTGTTTACATGGTGTCATTCACCTGGAACCACACATGCAACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGT-A--CACATAGAACCACACATGCAACCTAGCTACATTTATCTCG
85887943 TA
63 TA
* * * *
85887945 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTAC-TTCGTAATGTCT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACACATGCAACCTAGCTACATT--T-A--TCT
85888009 CGTA
61 CGTA
*
85888013 GCTCTCTTGTAC-ACATGGTATACA
1 GCTCTCTTGT-CTACATGGTGTACA
85888037 TCCCGTATTA
Statistics
Matches: 188, Mismatches: 23, Indels: 25
0.80 0.10 0.11
Matches are distributed among these distances:
63 18 0.10
64 25 0.13
65 3 0.02
66 21 0.11
67 90 0.48
68 30 0.16
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.33
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACACATGCAACCTAGCTACATTTATCTCGTA
Found at i:85888058 original size:68 final size:68
Alignment explanation
Indices: 85887938--85888064 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
85887928 GCTACATTTA
* * *
85887938 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTTCGTA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACTTCGTA
85888003 ATG
66 ATG
* * * *
85888006 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTATCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGCGACCTAGCTAC
85888065 ATACCATATG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
68 48 0.96
69 2 0.04
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACTTCGTA
ATG
Found at i:85890248 original size:38 final size:38
Alignment explanation
Indices: 85890197--85890272 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
85890187 TATTCCATCA
85890197 TTCTAAACTATTACACAACCTTTGAAAATCAGAATTTT
1 TTCTAAACTATTACACAACCTTTGAAAATCAGAATTTT
85890235 TTCTAAACTATTACACAACCTTTGAAAATCAGAATTTT
1 TTCTAAACTATTACACAACCTTTGAAAATCAGAATTTT
85890273 AACACTAAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.37
Consensus pattern (38 bp):
TTCTAAACTATTACACAACCTTTGAAAATCAGAATTTT
Found at i:85893135 original size:6 final size:6
Alignment explanation
Indices: 85893124--85893162 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
85893114 ATCTTGTGGC
85893124 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
85893163 GAGATGGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:85896511 original size:13 final size:13
Alignment explanation
Indices: 85896493--85896518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85896483 GCTCGGCAAG
85896493 GACACGCCCGTGT
1 GACACGCCCGTGT
85896506 GACACGCCCGTGT
1 GACACGCCCGTGT
85896519 ACGATTACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:85899600 original size:26 final size:26
Alignment explanation
Indices: 85899569--85899648 Score: 106
Period size: 26 Copynumber: 3.1 Consensus size: 26
85899559 ACACAGTTCT
* *
85899569 CACATTAAGATTGCATATCAAGCTCG
1 CACATTAGGCTTGCATATCAAGCTCG
* *
85899595 CTCATTAGGCTTGCATATCAAGCTTG
1 CACATTAGGCTTGCATATCAAGCTCG
**
85899621 CACATTAGGCTTGCATATTGAGCTCG
1 CACATTAGGCTTGCATATCAAGCTCG
85899647 CA
1 CA
85899649 TGACGCTAAG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
CACATTAGGCTTGCATATCAAGCTCG
Found at i:85899621 original size:13 final size:13
Alignment explanation
Indices: 85899579--85899638 Score: 50
Period size: 13 Copynumber: 4.6 Consensus size: 13
85899569 CACATTAAGA
85899579 TTGCATATCAAGC
1 TTGCATATCAAGC
* * *
85899592 TCGC-TCATTAGGC
1 TTGCAT-ATCAAGC
85899605 TTGCATATCAAGC
1 TTGCATATCAAGC
* * *
85899618 TTGCACATTAGGC
1 TTGCATATCAAGC
85899631 TTGCATAT
1 TTGCATAT
85899639 TGAGCTCGCA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
12 1 0.03
13 33 0.94
14 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (13 bp):
TTGCATATCAAGC
Found at i:85906494 original size:14 final size:14
Alignment explanation
Indices: 85906472--85906507 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
85906462 CTATCCAAAA
* *
85906472 AAAAAAAAAGAGAG
1 AAAAGAAAAGAAAG
85906486 AAAAGAAAAGAAAG
1 AAAAGAAAAGAAAG
85906500 AAAAGAAA
1 AAAAGAAA
85906508 TCAAATTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:85908737 original size:44 final size:43
Alignment explanation
Indices: 85908687--85908829 Score: 141
Period size: 44 Copynumber: 3.3 Consensus size: 43
85908677 TGTGTTATTG
*
85908687 TGTAAGACCATGTCTTAGACATTAGCATCGACT-TCTGATTTACA
1 TGTAAGACCATGTCTTAGACATTAGCATCGA-TATTTGA-TTACA
* * ** *
85908731 TATAAGACAATGTCTGGGACATCAGCATC-ATATTTGATT-CA
1 TGTAAGACCATGTCTTAGACATTAGCATCGATATTTGATTACA
* * *
85908772 TGTAAGACCATGTC-TAGGACAATGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTTA-GACATTAGCATCGATATTTGATTACA
*
85908815 TGTAAGACCACGTCT
1 TGTAAGACCATGTCT
85908830 GGGACGTTGG
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
41 23 0.29
42 12 0.15
43 20 0.25
44 24 0.30
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTTAGACATTAGCATCGATATTTGATTACA
Found at i:85908841 original size:43 final size:42
Alignment explanation
Indices: 85908687--85908842 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 42
85908677 TGTGTTATTG
** * *
85908687 TGTAAGACCATGTCTTAGACATTAGCATCGACT-TCTGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-A-TATTTGA-TTACA
* * **
85908731 TATAAGACAATGTCTGGGACATCAGCATCATATTTGATT-CA
1 TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTACA
* * *
85908772 TGTAAGACCATGTCTAGGACAATGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTACA
* *
85908815 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
85908843 TGTATTTGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 25 0.27
42 12 0.13
43 31 0.34
44 24 0.26
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTACA
Found at i:85916778 original size:17 final size:17
Alignment explanation
Indices: 85916747--85916780 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85916737 TGCTAACCCA
* *
85916747 TTATGCGAGCCTATGTT
1 TTATGCGAACATATGTT
85916764 TTATGCGAACATATGTT
1 TTATGCGAACATATGTT
85916781 GTTTGAAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41
Consensus pattern (17 bp):
TTATGCGAACATATGTT
Found at i:85918906 original size:27 final size:27
Alignment explanation
Indices: 85918876--85918930 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
85918866 ATCTATAGTG
* *
85918876 ATTAAATTTTTTCCACTTTTAAGATTT
1 ATTAAAATTTTCCCACTTTTAAGATTT
85918903 ATTAAAATTTTCCCACTTTTAAGATTT
1 ATTAAAATTTTCCCACTTTTAAGATTT
85918930 A
1 A
85918931 GTCCTTGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.51
Consensus pattern (27 bp):
ATTAAAATTTTCCCACTTTTAAGATTT
Found at i:85920027 original size:180 final size:180
Alignment explanation
Indices: 85919725--85920087 Score: 726
Period size: 180 Copynumber: 2.0 Consensus size: 180
85919715 CTCAGCATAC
85919725 GGTTTTGTTTATTTCCATGCGCAAGTATCGTTAGGTTTTGAGGTTTCAAAGAGAACAACATCCAG
1 GGTTTTGTTTATTTCCATGCGCAAGTATCGTTAGGTTTTGAGGTTTCAAAGAGAACAACATCCAG
85919790 GACCCAAATCTTGACTCTGCAAAGTTGGTATAGATTTTTTTATGTTTATATCAATTGATATGTAT
66 GACCCAAATCTTGACTCTGCAAAGTTGGTATAGATTTTTTTATGTTTATATCAATTGATATGTAT
85919855 CTAAGGTCTTGAGTTAGTTTTAAGTCCATTTTGAATGATTTAGTTCAAAT
131 CTAAGGTCTTGAGTTAGTTTTAAGTCCATTTTGAATGATTTAGTTCAAAT
85919905 GGTTTTGTTTATTTCCATGCGCAAGTATCGTTAGGTTTTGAGGTTTCAAAGAGAACAACATCCAG
1 GGTTTTGTTTATTTCCATGCGCAAGTATCGTTAGGTTTTGAGGTTTCAAAGAGAACAACATCCAG
85919970 GACCCAAATCTTGACTCTGCAAAGTTGGTATAGATTTTTTTATGTTTATATCAATTGATATGTAT
66 GACCCAAATCTTGACTCTGCAAAGTTGGTATAGATTTTTTTATGTTTATATCAATTGATATGTAT
85920035 CTAAGGTCTTGAGTTAGTTTTAAGTCCATTTTGAATGATTTAGTTCAAAT
131 CTAAGGTCTTGAGTTAGTTTTAAGTCCATTTTGAATGATTTAGTTCAAAT
85920085 GGT
1 GGT
85920088 AGGAAATGTT
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 183 1.00
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (180 bp):
GGTTTTGTTTATTTCCATGCGCAAGTATCGTTAGGTTTTGAGGTTTCAAAGAGAACAACATCCAG
GACCCAAATCTTGACTCTGCAAAGTTGGTATAGATTTTTTTATGTTTATATCAATTGATATGTAT
CTAAGGTCTTGAGTTAGTTTTAAGTCCATTTTGAATGATTTAGTTCAAAT
Found at i:85920708 original size:94 final size:94
Alignment explanation
Indices: 85920511--85920714 Score: 259
Period size: 94 Copynumber: 2.2 Consensus size: 94
85920501 CCCCTGATTC
** *
85920511 TTTTTGCACTTAATTGGATACTTGAAATTTCAAAATGCATAATAAGGATCTCAAACTTATTCAAA
1 TTTTTGCACTTAATTGGATACTTGAAATGCCAAAATGCATAAAAAGGATCTCAAACTTATTCAAA
* *
85920576 ATAGCAATTAAGCCCCTGTGTCTTTTGTT
66 AAAGCAATTAAGACCCTGTGTCTTTTGTT
** * * * *
85920605 TTTGCGCACTTAATTGGGTACTTGAACTGCCAAAATGCATAAAAAAGGCTCTCAAACTTTTTCAA
1 TTTTTGCACTTAATTGGATACTTGAAATGCCAAAATGCAT-AAAAAGGATCTCAAACTTATTCAA
*
85920670 AAAAGCAATTAA-ACCCT-TGTTTGTTTGTT
65 AAAAGCAATTAAGACCCTGTGTCT-TTTGTT
*
85920699 TTTTTGCACTCAATTG
1 TTTTTGCACTTAATTG
85920715 CCAAAATGCA
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
93 4 0.04
94 57 0.61
95 32 0.34
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (94 bp):
TTTTTGCACTTAATTGGATACTTGAAATGCCAAAATGCATAAAAAGGATCTCAAACTTATTCAAA
AAAGCAATTAAGACCCTGTGTCTTTTGTT
Found at i:85921009 original size:10 final size:10
Alignment explanation
Indices: 85920996--85921138 Score: 61
Period size: 10 Copynumber: 14.6 Consensus size: 10
85920986 TTTTGATGCG
85920996 TTTTATAAAT
1 TTTTATAAAT
*
85921006 TTTTAT-GAT
1 TTTTATAAAT
*
85921015 TTTTATAAAA
1 TTTTATAAAT
85921025 TTTTAT--AT
1 TTTTATAAAT
* *
85921033 TTTTTTACGAT
1 TTTTATA-AAT
*
85921044 TTATATAAAT
1 TTTTATAAAT
85921054 TTTCTAT---T
1 TTT-TATAAAT
85921062 TTTTAGTAAA-
1 TTTTA-TAAAT
*
85921072 TTTTAAATAAT
1 TTTTATA-AAT
* *
85921083 TTTTTTATAT
1 TTTTATAAAT
85921093 TTTTATTAAA-
1 TTTTA-TAAAT
* *
85921103 GTTTAGTAATT
1 TTTTA-TAAAT
85921114 TTTTAT-AAT
1 TTTTATAAAT
**
85921123 TTTTATTGAT
1 TTTTATAAAT
85921133 TTTTAT
1 TTTTAT
85921139 TTTTATAATT
Statistics
Matches: 98, Mismatches: 21, Indels: 28
0.67 0.14 0.19
Matches are distributed among these distances:
7 2 0.02
8 11 0.11
9 17 0.17
10 46 0.47
11 22 0.22
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:85921009 original size:20 final size:20
Alignment explanation
Indices: 85920984--85921028 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
85920974 GTTAAAGGGC
*
85920984 ATTTTTGATGCGTTTTAT-AA
1 ATTTTT-ATGAGTTTTATAAA
*
85921004 ATTTTTATGATTTTTATAAA
1 ATTTTTATGAGTTTTATAAA
85921024 ATTTT
1 ATTTT
85921029 ATATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (20 bp):
ATTTTTATGAGTTTTATAAA
Found at i:85921037 original size:19 final size:19
Alignment explanation
Indices: 85920996--85921036 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
85920986 TTTTGATGCG
*
85920996 TTTTATAAATTTTTATGAT
1 TTTTATAAAATTTTATGAT
85921015 TTTTATAAAATTTTAT-AT
1 TTTTATAAAATTTTATGAT
85921033 TTTT
1 TTTT
85921037 TTACGATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTATAAAATTTTATGAT
Found at i:85921066 original size:27 final size:29
Alignment explanation
Indices: 85920996--85921065 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
85920986 TTTTGATGCG
** * *
85920996 TTTTATAAATTTTTATGATTTTTATAAAA
1 TTTTATATTTTTTTACGATTTATATAAAA
85921025 TTTTATATTTTTTTACGATTTATAT-AAA
1 TTTTATATTTTTTTACGATTTATATAAAA
*
85921053 TTTTCTATTTTTT
1 TTTTATATTTTTT
85921066 AGTAAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (29 bp):
TTTTATATTTTTTTACGATTTATATAAAA
Found at i:85921114 original size:40 final size:41
Alignment explanation
Indices: 85921063--85921139 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
85921053 TTTTCTATTT
*
85921063 TTTAGTAAATTTTAAATAATTTTT-TTATATTTTTATTAAAG
1 TTTAGTAAATTTTAAATAATTTTTATT-GATTTTTATTAAAG
**
85921104 TTTAGT-AATTTTTTATAATTTTTATTGATTTTTATT
1 TTTAGTAAATTTTAAATAATTTTTATTGATTTTTATT
85921140 TTTATAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 24 0.75
41 8 0.25
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (41 bp):
TTTAGTAAATTTTAAATAATTTTTATTGATTTTTATTAAAG
Found at i:85921115 original size:30 final size:30
Alignment explanation
Indices: 85921025--85921129 Score: 92
Period size: 30 Copynumber: 3.5 Consensus size: 30
85921015 TTTTATAAAA
* *
85921025 TTTTATATTTTT-TT-ACGATTTATATAAATT
1 TTTTATATTTTTATTAAAG-TTTAAAT-AATT
* * *
85921055 TTCTAT-TTTTTAGTAAATTTTAAATAATTT
1 TTTTATATTTTTATTAAAGTTTAAATAA-TT
*
85921085 TTTTATATTTTTATTAAAGTTT-AGTAATT
1 TTTTATATTTTTATTAAAGTTTAAATAATT
85921114 TTTTATAATTTTTATT
1 TTTTAT-ATTTTTATT
85921130 GATTTTTATT
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
29 15 0.25
30 32 0.52
31 14 0.23
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (30 bp):
TTTTATATTTTTATTAAAGTTTAAATAATT
Found at i:85921398 original size:87 final size:87
Alignment explanation
Indices: 85921273--85921590 Score: 390
Period size: 87 Copynumber: 3.6 Consensus size: 87
85921263 TTCATTTTGG
* *
85921273 CAATTGAGTGTAAAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAATTTTAGGGTTTTTTTA
1 CAATTGAGTGCAAAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTTAGGGTTTTTTTA
*
85921338 TGCCTTTTAATAATTCAAGTACC
66 TGCATTTTAA-AATTCAAGTACC
*
85921361 CAATTGAGTGCAAAAAAAAG-GGGGGCTTAATTGCTTTTTTTG-AAAAGTTTTGAGGGTTTTTTT
1 CAATTGAGTGCAAAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTT-AGGGTTTTTTT
*
85921424 ATGCATTTTGACAATTCAAGTACC
65 ATGCATTTT-AAAATTCAAGTACC
* * *
85921448 CAATTGAGTGCAAAAAAAAAGTAGGGG-TTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTT
1 CAATTGAGTGC-AAAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTTAGGG-TTTTTT
* * *
85921512 TATGCATTTTGAAAGTTCATGTTCC
64 TATGCATTTT-AAAATTCAAGTACC
* *
85921537 CAATTGAGTGCAAGAAAAAAAAAGAGCAAGGGCTTAATTGCTTTTTTTTAAAAA
1 CAATTGAGTGC-----AAAAAAA-AGCAGGGGCTTAATTGCTTTTTTTGAAAAA
85921591 AAGTTTGAGG
Statistics
Matches: 203, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
86 8 0.04
87 63 0.31
88 49 0.24
89 49 0.24
93 8 0.04
94 6 0.03
95 20 0.10
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (87 bp):
CAATTGAGTGCAAAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTTAGGGTTTTTTTA
TGCATTTTAAAATTCAAGTACC
Found at i:85923502 original size:27 final size:27
Alignment explanation
Indices: 85923460--85923512 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
85923450 TCCCTAAGGT
*
85923460 AATATTCTTATAGGTACCACTCTTTGA
1 AATATTCCTATAGGTACCACTCTTTGA
* *
85923487 AATATTCCTATGGGTACCACTTTTTG
1 AATATTCCTATAGGTACCACTCTTTG
85923513 GCTGAGTCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (27 bp):
AATATTCCTATAGGTACCACTCTTTGA
Found at i:85923888 original size:25 final size:25
Alignment explanation
Indices: 85923860--85923918 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
85923850 ATCATACAGT
85923860 CTTTTCATACAATACACCACAAAGG
1 CTTTTCATACAATACACCACAAAGG
*
85923885 CTTTTCATATAATACACCACAAAGG
1 CTTTTCATACAATACACCACAAAGG
85923910 CTTTTCATA
1 CTTTTCATA
85923919 AAATTAGCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.31
Consensus pattern (25 bp):
CTTTTCATACAATACACCACAAAGG
Found at i:85924936 original size:74 final size:74
Alignment explanation
Indices: 85924858--85925006 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
85924848 TTTAAGTAAT
85924858 ATATATTATAATACAATAATATAACTAAACATAAAAAATATAAACTAAAATAAACAAAAGATAGA
1 ATATATTATAATACAATAATATAACTAAACATAAAAAATATAAACTAAAATAAACAAAAGATAGA
85924923 AAAAGAAAC
66 AAAAGAAAC
*
85924932 ATATATTATAATATAATAATATAACTAAACATAAAAAATATAAACTAAAATAAACAAAAGATAGA
1 ATATATTATAATACAATAATATAACTAAACATAAAAAATATAAACTAAAATAAACAAAAGATAGA
85924997 AAAAGAAAC
66 AAAAGAAAC
85925006 A
1 A
85925007 GAGAGTGAAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.66, C:0.07, G:0.04, T:0.22
Consensus pattern (74 bp):
ATATATTATAATACAATAATATAACTAAACATAAAAAATATAAACTAAAATAAACAAAAGATAGA
AAAAGAAAC
Found at i:85927536 original size:12 final size:12
Alignment explanation
Indices: 85927519--85927546 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
85927509 TTGGGCCTCG
85927519 AGGGCCCATACA
1 AGGGCCCATACA
85927531 AGGGCCCATACA
1 AGGGCCCATACA
85927543 AGGG
1 AGGG
85927547 ACAATATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.32, T:0.07
Consensus pattern (12 bp):
AGGGCCCATACA
Found at i:85932154 original size:43 final size:42
Alignment explanation
Indices: 85932097--85932177 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
85932087 AGTATTGGCC
* *
85932097 ACACAGGCTGAGACAC-GGCCGTGTGTCTCAACCGTGTGAGGG
1 ACACAGCCTGAGACACAGG-CGTGTGGCTCAACCGTGTGAGGG
*
85932139 ACACAGCCTGGAGACACAGGCGTGTGGCTCGACCGTGTG
1 ACACAGCCT-GAGACACAGGCGTGTGGCTCAACCGTGTG
85932178 GTTCGATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 8 0.24
43 24 0.71
44 2 0.06
ACGTcount: A:0.21, C:0.27, G:0.36, T:0.16
Consensus pattern (42 bp):
ACACAGCCTGAGACACAGGCGTGTGGCTCAACCGTGTGAGGG
Found at i:85934232 original size:43 final size:43
Alignment explanation
Indices: 85934171--85934261 Score: 155
Period size: 43 Copynumber: 2.1 Consensus size: 43
85934161 AAATTTGTGG
85934171 CGTTTGTCGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGA
1 CGTTTGTCGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGA
* * *
85934214 CGTTTGTGGGAAAAGCGCCGCTAAAGGTTAAGGCTTTTAGCGG
1 CGTTTGTCGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGA
85934257 CGTTT
1 CGTTT
85934262 TTTTACAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (43 bp):
CGTTTGTCGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGA
Found at i:85940144 original size:9 final size:9
Alignment explanation
Indices: 85940130--85940277 Score: 144
Period size: 9 Copynumber: 17.0 Consensus size: 9
85940120 TGACAACATA
85940130 TAAGTTATG
1 TAAGTTATG
*
85940139 TAAGTTATA
1 TAAGTTATG
85940148 TAAGTTATG
1 TAAGTTATG
85940157 TAAGTTATG
1 TAAGTTATG
*
85940166 TAAGTTATA
1 TAAGTTATG
85940175 TAAGTTATG
1 TAAGTTATG
85940184 T-A---ATG
1 TAAGTTATG
* *
85940189 TATGTTATA
1 TAAGTTATG
85940198 TAAGTTATG
1 TAAGTTATG
*
85940207 TAAGTTATA
1 TAAGTTATG
*
85940216 TAAGTTATA
1 TAAGTTATG
* *
85940225 T-ATTTATC
1 TAAGTTATG
*
85940233 TAAGTTATA
1 TAAGTTATG
85940242 TAAGTTATG
1 TAAGTTATG
* *
85940251 TACGTTTTG
1 TAAGTTATG
*
85940260 TAAGTTATA
1 TAAGTTATG
*
85940269 TAAATTATG
1 TAAGTTATG
85940278 ATATCAAATA
Statistics
Matches: 113, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
5 4 0.04
8 7 0.06
9 102 0.90
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:85940150 original size:18 final size:18
Alignment explanation
Indices: 85940127--85940277 Score: 159
Period size: 18 Copynumber: 8.7 Consensus size: 18
85940117 AGTTGACAAC
85940127 ATATAAGTTATGTAAGTT
1 ATATAAGTTATGTAAGTT
85940145 ATATAAGTTATGTAAGTT
1 ATATAAGTTATGTAAGTT
* *
85940163 ATGTAAGTTATATAAG-T
1 ATATAAGTTATGTAAGTT
* *
85940180 -TAT--GTAATGTATGTT
1 ATATAAGTTATGTAAGTT
85940195 ATATAAGTTATGTAAGTT
1 ATATAAGTTATGTAAGTT
* *
85940213 ATATAAGTTATAT-ATTT
1 ATATAAGTTATGTAAGTT
* *
85940230 ATCTAAGTTATATAAGTT
1 ATATAAGTTATGTAAGTT
* * *
85940248 ATGTACGTTTTGTAAGTT
1 ATATAAGTTATGTAAGTT
*
85940266 ATATAAATTATG
1 ATATAAGTTATG
85940278 ATATCAAATA
Statistics
Matches: 108, Mismatches: 20, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
14 7 0.06
15 1 0.01
16 5 0.05
17 16 0.15
18 79 0.73
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.46
Consensus pattern (18 bp):
ATATAAGTTATGTAAGTT
Found at i:85940161 original size:27 final size:27
Alignment explanation
Indices: 85940130--85940276 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
85940120 TGACAACATA
*
85940130 TAAGTTATGTAAGTTATATAAGTTATG
1 TAAGTTATATAAGTTATATAAGTTATG
*
85940157 TAAGTTATGTAAGTTATATAAGTTATG
1 TAAGTTATATAAGTTATATAAGTTATG
85940184 TAATG---TAT--GTTATATAAGTTATG
1 TAA-GTTATATAAGTTATATAAGTTATG
* *
85940207 TAAGTTATATAAGTTATAT-ATTTATC
1 TAAGTTATATAAGTTATATAAGTTATG
* * *
85940233 TAAGTTATATAAGTTATGTACGTTTTG
1 TAAGTTATATAAGTTATATAAGTTATG
*
85940260 TAAGTTATATAAATTAT
1 TAAGTTATATAAGTTAT
85940277 GATATCAAAT
Statistics
Matches: 104, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
22 1 0.01
23 18 0.17
25 5 0.05
26 23 0.22
27 56 0.54
28 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (27 bp):
TAAGTTATATAAGTTATATAAGTTATG
Found at i:85940402 original size:15 final size:15
Alignment explanation
Indices: 85940382--85940437 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
85940372 AAGTAGCGGG
85940382 ATTAAATAATATTTA
1 ATTAAATAATATTTA
85940397 ATTAAATAATATTT-
1 ATTAAATAATATTTA
85940411 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
85940426 ATTAAGTAATAT
1 ATTAAATAATAT
85940438 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:85941162 original size:290 final size:290
Alignment explanation
Indices: 85940642--85941359 Score: 1418
Period size: 290 Copynumber: 2.5 Consensus size: 290
85940632 TTGTGATAAA
85940642 AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
1 AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
* *
85940707 TATCTTGCAGCTCGATATAAGGCAACCCTTCAGGTTTCCAGCCTATATACTTTGAATCTTTGAAA
66 TATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA
85940772 TATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATCA
131 TATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATCA
85940837 AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAATGTTATATAAATATTCA
196 AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAATGTTATATAAATATTCA
85940902 ATAGTAAATGAGCTCGATAGAACATTTTTC
261 ATAGTAAATGAGCTCGATAGAACATTTTTC
85940932 AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
1 AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
85940997 TATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA
66 TATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA
85941062 TATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATCA
131 TATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATCA
85941127 AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAATGTTATATAAATATTCA
196 AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAATGTTATATAAATATTCA
85941192 ATAGTAAATGAGCTCGATAGAACATTTTTC
261 ATAGTAAATGAGCTCGATAGAACATTTTTC
85941222 AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
1 AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
85941287 TATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA
66 TATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA
85941352 TATTTAAA
131 TATTTAAA
85941360 ATAACGTTGG
Statistics
Matches: 426, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
290 426 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (290 bp):
AAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTA
TATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA
TATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATCA
AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAATGTTATATAAATATTCA
ATAGTAAATGAGCTCGATAGAACATTTTTC
Found at i:85954768 original size:61 final size:62
Alignment explanation
Indices: 85954655--85954836 Score: 357
Period size: 62 Copynumber: 3.0 Consensus size: 62
85954645 NNNNNNNNNN
85954655 TTTTCCATTTCAGAACAAAAA-ATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
85954716 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
85954778 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
1 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
85954837 CAAATTTTGG
Statistics
Matches: 120, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 21 0.17
62 99 0.82
ACGTcount: A:0.55, C:0.18, G:0.08, T:0.19
Consensus pattern (62 bp):
TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
Found at i:85957205 original size:26 final size:25
Alignment explanation
Indices: 85957176--85957225 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
85957166 GAATTAATCA
85957176 TAAACCTTCAAATAC-TAGTTAACTCC
1 TAAACCTT-AAA-ACATAGTTAACTCC
*
85957202 TAAACCTTAAACCATAGTTAACTC
1 TAAACCTTAAAACATAGTTAACTC
85957226 ATAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACCTTAAAACATAGTTAACTCC
Found at i:85957260 original size:14 final size:14
Alignment explanation
Indices: 85957243--85957282 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
85957233 ATTAAACATG
* *
85957243 CTTAAACCATATAT
1 CTTAAACCATAAAC
85957257 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
85957271 CTTAAACTATAA
1 CTTAAACCATAA
85957283 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:85957498 original size:41 final size:41
Alignment explanation
Indices: 85957439--85957822 Score: 527
Period size: 41 Copynumber: 9.4 Consensus size: 41
85957429 GGTTATGAGA
* *
85957439 TTTTTAGTGGCGTTTTACGAAAAGCGCCGCTGATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * * *
85957480 TGTTTAGCAGCGTTTTACGAAAAGCGCCGCTGATACTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * *
85957521 TATTTAGCGGCGTTTTACGAAAAGCGCCGCTGATGCTTTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* *
85957562 TGTTTAGCGGCTTTTTACGAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * * **
85957603 TTTTTTGCGGCGTTTTAGGAAAAACGAAGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * *
85957644 TTTTTTGCGGCGTTTTAGGAAAAGCGCCGCTAATGCTCTAG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* *
85957685 TTTTTGGCGGCGTTTTACGAGAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * * *
85957726 TTTTTTGCGGCGTTTTAGGAAAAGCGCCTCTAATGCTCTAG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
*
85957767 TTTTTAGCGGCGTTTTATGAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
85957808 -TTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
85957823 TTCTAGAACG
Statistics
Matches: 307, Mismatches: 36, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
40 15 0.05
41 292 0.95
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.34
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
Found at i:85960058 original size:44 final size:44
Alignment explanation
Indices: 85959969--85960058 Score: 103
Period size: 45 Copynumber: 2.0 Consensus size: 44
85959959 AGATGTAAGC
* * * *
85959969 CAATGTAAGACATGTTTGGGACATGCTTTGGCTACTAAATGTGT
1 CAATGTAAAACATGTTTGGGACATGCATCGGCTACTAAATATGT
*
85960013 CAATGTAAAACCATGTTTGGGACATGGCATCGGC-ACT-GATATGT
1 CAATGTAAAA-CATGTTTGGGACAT-GCATCGGCTACTAAATATGT
85960057 CA
1 CA
85960059 GAGCTAGTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
44 16 0.41
45 17 0.44
46 6 0.15
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
CAATGTAAAACATGTTTGGGACATGCATCGGCTACTAAATATGT
Found at i:85961896 original size:21 final size:21
Alignment explanation
Indices: 85961871--85961938 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
85961861 TTTTGATTTT
85961871 GATATGCATAAGGTTGCAAGA
1 GATATGCATAAGGTTGCAAGA
** ***
85961892 GATATGCCATGAATTTTG-ATTTT
1 GATATG-CAT-AAGGTTGCA-AGA
85961915 GATATGCATAAGGTTGCAAGA
1 GATATGCATAAGGTTGCAAGA
85961936 GAT
1 GAT
85961939 TATGGGTAAC
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
21 14 0.42
22 8 0.24
23 11 0.33
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.32
Consensus pattern (21 bp):
GATATGCATAAGGTTGCAAGA
Found at i:85961913 original size:44 final size:44
Alignment explanation
Indices: 85961850--85961938 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
85961840 TCACTAAAAT
85961850 TATGCCATGAATTTTGATTTTGATATGCATAAGGTTGCAAGAGA
1 TATGCCATGAATTTTGATTTTGATATGCATAAGGTTGCAAGAGA
85961894 TATGCCATGAATTTTGATTTTGATATGCATAAGGTTGCAAGAGA
1 TATGCCATGAATTTTGATTTTGATATGCATAAGGTTGCAAGAGA
85961938 T
1 T
85961939 TATGGGTAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.37
Consensus pattern (44 bp):
TATGCCATGAATTTTGATTTTGATATGCATAAGGTTGCAAGAGA
Found at i:85965907 original size:10 final size:10
Alignment explanation
Indices: 85965887--85965919 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
85965877 TAATTTTTTT
85965887 AAATTTT-AA
1 AAATTTTAAA
85965896 AAATTTTAAA
1 AAATTTTAAA
*
85965906 AAATTATAAA
1 AAATTTTAAA
85965916 AAAT
1 AAAT
85965920 ATTTTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:85965988 original size:45 final size:44
Alignment explanation
Indices: 85965885--85966000 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 44
85965875 ATTAATTTTT
* *** *
85965885 TTAAATTTTAAAAATTTTAAAAAATTATAAAAAATATTTTTAAAAC
1 TTAAATTTTTAAAA-TTT-AAAAATTATAAAAAATATTAAAAAAAA
**
85965931 TTAAATCATTAAAATATTAAAAATTATAAAAAATA-TAAAAAAAA
1 TTAAATTTTTAAAAT-TTAAAAATTATAAAAAATATTAAAAAAAA
85965975 TTAATATTTTTAAAATTTAAAAATTA
1 TTAA-ATTTTTAAAATTTAAAAATTA
85966001 ATTAAATACT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
44 19 0.32
45 27 0.46
46 13 0.22
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (44 bp):
TTAAATTTTTAAAATTTAAAAATTATAAAAAATATTAAAAAAAA
Found at i:85973053 original size:53 final size:53
Alignment explanation
Indices: 85972969--85973070 Score: 159
Period size: 53 Copynumber: 1.9 Consensus size: 53
85972959 AAGTGAAGTA
* * *
85972969 TGAACACAAATATTTTACGTGCAAAATCCTCAAATAAGGAAAAACCACGATAT
1 TGAACACAAATATTTTACGTGAAAAACCCTCAAAGAAGGAAAAACCACGATAT
* *
85973022 TGAACACAAATATTTTACGTGAAAAACCCTCAAAGAGGGAAATACCACG
1 TGAACACAAATATTTTACGTGAAAAACCCTCAAAGAAGGAAAAACCACG
85973071 GTAAAGGAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.21
Consensus pattern (53 bp):
TGAACACAAATATTTTACGTGAAAAACCCTCAAAGAAGGAAAAACCACGATAT
Found at i:85975347 original size:40 final size:41
Alignment explanation
Indices: 85975270--85975466 Score: 199
Period size: 40 Copynumber: 4.9 Consensus size: 41
85975260 CCGAATACAC
* * * * **
85975270 GTCACCAGCATGATTGCTCTTCGGGATTTAGTACGGATATA
1 GTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
*
85975311 -TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 GTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
85975351 -TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATTTA
1 GTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
85975391 GTAACTCGCACCAATGC-CTTC-GGATCTTAGTCCGGATATA
1 GTCACTAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATATA
*
85975431 GTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 GTCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
85975467 CATCATTCGA
Statistics
Matches: 130, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
39 3 0.02
40 107 0.82
41 20 0.15
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
GTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:85975807 original size:29 final size:29
Alignment explanation
Indices: 85975773--85975846 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
85975763 TAATCAACCA
* *
85975773 CGCACACTTAGTGCCATGTACTTT-ACA-CT
1 CGCACACTTAGTGCCATGCA-TTTCA-AGCC
85975802 CGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAGCC
85975831 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
85975847 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 37 0.90
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCC
Found at i:85977805 original size:37 final size:37
Alignment explanation
Indices: 85977755--85977833 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
85977745 TTATTACGAA
* * *
85977755 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
85977792 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
85977829 GTCTT
1 GTCTT
85977834 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:85978059 original size:49 final size:49
Alignment explanation
Indices: 85977954--85978082 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
85977944 CTTCGGGACT
* * * *
85977954 TATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
85978001 TGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
85978050 TATCTC--ATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATATACACT-TTCACATCCATCACAT
85978083 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 30 0.45
48 1 0.01
49 35 0.52
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:85987716 original size:93 final size:93
Alignment explanation
Indices: 85987604--85987773 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
85987594 CGCCATAAGT
*
85987604 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85987668 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
85987697 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85987762 CGAGTTCGGATG
66 CGAGCTCGGATG
85987774 TTCAACCATC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:85987790 original size:46 final size:46
Alignment explanation
Indices: 85987596--85987776 Score: 213
Period size: 46 Copynumber: 3.9 Consensus size: 46
85987586 ATGTAACCCG
85987596 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGCAT
* * * *
85987642 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * *
85987688 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
85987735 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTC
85987777 AACCATCCTA
Statistics
Matches: 111, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 74 0.67
47 35 0.32
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:85994292 original size:21 final size:22
Alignment explanation
Indices: 85994246--85994292 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
85994236 TAATGATAAA
*
85994246 GAAAATGAACTAAAAAGTAGCT
1 GAAATTGAACTAAAAAGTAGCT
* *
85994268 -AAATTGAACTCAAACG-AGCT
1 GAAATTGAACTAAAAAGTAGCT
85994288 GAAAT
1 GAAAT
85994293 AAGCTCAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (22 bp):
GAAATTGAACTAAAAAGTAGCT
Found at i:85998668 original size:6 final size:6
Alignment explanation
Indices: 85998653--85998682 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
85998643 TGTTTTGGAT
85998653 TAAAAA -AAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
85998683 TTATTGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:85999075 original size:28 final size:28
Alignment explanation
Indices: 85999027--85999090 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
85999017 CCTGACACAA
* *
85999027 GCCCGTGTCCTTTACATGGCTAGGACAT
1 GCCCGTGTCCTTTACACGGCTAGGACAC
*
85999055 GCCTGTGTCCTTTACACGGCTAGGACAC
1 GCCCGTGTCCTTTACACGGCTAGGACAC
85999083 GCCCGTGT
1 GCCCGTGT
85999091 GCTAGCCTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.16, C:0.31, G:0.27, T:0.27
Consensus pattern (28 bp):
GCCCGTGTCCTTTACACGGCTAGGACAC
Found at i:86000854 original size:54 final size:54
Alignment explanation
Indices: 86000670--86000865 Score: 211
Period size: 55 Copynumber: 3.6 Consensus size: 54
86000660 AACTTACCAT
* * * *
86000670 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTAT-GAACTCA-CTAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AA
* ** *
86000723 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
** * * *
86000778 TGCCATGTTTTGAAATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
86000832 TGCCATGCCTT-AGCATGGTCTTACATGATATCCT
1 TGCCATGCCTTGA-CATGGTCTTACATGATATCCT
86000866 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 38 0.32
55 41 0.35
56 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:86008459 original size:25 final size:25
Alignment explanation
Indices: 86008431--86008514 Score: 64
Period size: 25 Copynumber: 3.2 Consensus size: 25
86008421 TGTTGCAATT
86008431 GGCCTCAACATAGACATGCATGTTC
1 GGCCTCAACATAGACATGCATGTTC
* * *
86008456 GGCCACATGA-ATGAGTACAT-AAGTGCAATC
1 GGCCTCA--ACAT-AG-ACATGCA-TG--TTC
86008486 GGCCTCAACATAGACATGCATGTTC
1 GGCCTCAACATAGACATGCATGTTC
86008511 GGCC
1 GGCC
86008515 ACATGAATGG
Statistics
Matches: 44, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
25 12 0.27
26 2 0.05
27 10 0.23
28 10 0.23
29 2 0.05
30 8 0.18
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (25 bp):
GGCCTCAACATAGACATGCATGTTC
Found at i:86008493 original size:55 final size:55
Alignment explanation
Indices: 86008424--86008532 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
86008414 TATTAAGTGT
*
86008424 TGCAATTGGCCTCAACATAGACATGCATGTTCGGCCACATGAATGAGTACATAAG
1 TGCAATCGGCCTCAACATAGACATGCATGTTCGGCCACATGAATGAGTACATAAG
*
86008479 TGCAATCGGCCTCAACATAGACATGCATGTTCGGCCACATGAATGGGTACATAA
1 TGCAATCGGCCTCAACATAGACATGCATGTTCGGCCACATGAATGAGTACATAA
86008533 CTTGATGTGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (55 bp):
TGCAATCGGCCTCAACATAGACATGCATGTTCGGCCACATGAATGAGTACATAAG
Found at i:86009243 original size:40 final size:40
Alignment explanation
Indices: 86009149--86009373 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
86009139 TATTCGAATG
* *
86009149 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
86009190 ATAACTGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* ** *
86009230 ATATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
86009270 ATATCTGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
86009310 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
86009350 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
86009374 CTTGTGCAAG
Statistics
Matches: 151, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
40 123 0.81
41 28 0.19
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:86009363 original size:120 final size:121
Alignment explanation
Indices: 86009149--86009373 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
86009139 TATTCGAATG
** * * *
86009149 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
86009214 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCAATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCAATT
* * *
86009270 ATATCTGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
86009333 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
86009374 CTTGTGCAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 56 0.63
121 30 0.34
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCAATT
Found at i:86017401 original size:40 final size:40
Alignment explanation
Indices: 86017307--86017531 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
86017297 TATTCGAATG
*
86017307 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
86017348 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* ** *
86017388 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * * *
86017428 ATATCTGGTCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
86017468 ATATCTGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
86017508 ACATCCGGGCTAAGAACCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
86017532 CTTGTGCAAG
Statistics
Matches: 150, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
40 121 0.81
41 28 0.19
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:86017528 original size:80 final size:80
Alignment explanation
Indices: 86017307--86017567 Score: 260
Period size: 80 Copynumber: 3.3 Consensus size: 80
86017297 TATTCGAATG
* * * *
86017307 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGACTAAGAACCGAAGGC
*
86017372 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* ** * * *
86017388 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATTATATCTGGTCTAA-AACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGACTAAGAA-CCGAAGGC
* *
86017452 ATTTGTGCTAG-CGACT
65 ATTCGTGCGAGTCG-CT
* * * * * *
86017468 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGAACCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGACTAAGAACCGAAGGCA
* * *
86017533 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
86017547 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
86017568 ATTACTTGAG
Statistics
Matches: 147, Mismatches: 29, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
78 14 0.10
79 14 0.10
80 85 0.58
81 34 0.23
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGACTAAGAACCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:86031784 original size:22 final size:22
Alignment explanation
Indices: 86031755--86031816 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
86031745 CACCTAACAC
*
86031755 AGGG-GCACACGTCCGTGTGGG
1 AGGGAGCACACGCCCGTGTGGG
86031776 AGGGAGCACACGCCCGTGTGGG
1 AGGGAGCACACGCCCGTGTGGG
*
86031798 AGGGA-CAACACACCCGTGT
1 AGGGAGC-ACACGCCCGTGT
86031817 CCTGAACTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 5 0.14
22 32 0.86
ACGTcount: A:0.21, C:0.27, G:0.40, T:0.11
Consensus pattern (22 bp):
AGGGAGCACACGCCCGTGTGGG
Found at i:86035969 original size:122 final size:122
Alignment explanation
Indices: 86035752--86035995 Score: 470
Period size: 122 Copynumber: 2.0 Consensus size: 122
86035742 CCTTAAATGG
86035752 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
1 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
*
86035817 CTAAGCTGCATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
66 CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
86035874 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
1 TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
*
86035939 CTAAGCTACATGTTGTGGTTGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
66 CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
86035996 GATCTAAATA
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 120 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (122 bp):
TTTTTGCATGCAAAACAAAATAAAAATAAATATTAGCTCATTGATTATCCATCGTTTAGAAAATA
CTAAGCTACATGTTGTGGTCGGATCATAATGCAAGAAGATAGCTTGTGTTAATAGAT
Found at i:86046395 original size:366 final size:366
Alignment explanation
Indices: 86045723--86046454 Score: 1455
Period size: 366 Copynumber: 2.0 Consensus size: 366
86045713 CCATTCCATC
86045723 TATGCCCGCTTGTCCATTTACTTAAACCTATTTATTCTTTTTTCATGCATAAAAAGGAAGTGTGT
1 TATGCCCGCTTGTCCATTTACTTAAACCTATTTATTCTTTTTTCATGCATAAAAAGGAAGTGTGT
86045788 CCCTTGTATCGGGATTGTTAGAGATAAATAATTTTTTGCATTGTTCCCCTAACTTCCTCCTATCT
66 CCCTTGTATCGGGATTGTTAGAGATAAATAATTTTTTGCATTGTTCCCCTAACTTCCTCCTATCT
86045853 TCCTCACTAGGTTGGTGACCACATTTAAAAGTTTTAGTCTTGCCATTGATTTTCATAGTTAATTA
131 TCCTCACTAGGTTGGTGACCACATTTAAAAGTTTTAGTCTTGCCATTGATTTTCATAGTTAATTA
86045918 TTTTTCTCTAAACCAATGATAGATCTAAAAGTGGCCAGGAAAGGTCTACCTAATACGATCAGTAT
196 TTTTTCTCTAAACCAATGATAGATCTAAAAGTGGCCAGGAAAGGTCTACCTAATACGATCAGTAT
86045983 CTCACGATCTTCCTCAAAATCAAGCATCCCAAAATCTGTCGAAATAATGAAACTGCGCACTTTGA
261 CTCACGATCTTCCTCAAAATCAAGCATCCCAAAATCTGTCGAAATAATGAAACTGCGCACTTTGA
86046048 CTAACACATCCTCTAGTACAGGTTTTGGATGAACTGAAGAT
326 CTAACACATCCTCTAGTACAGGTTTTGGATGAACTGAAGAT
86046089 TATGCCCGCTTGTCCATTTACTTAAACCTATTTATTCTTTTTTCATGCATAAAAAGGAAGTGTGT
1 TATGCCCGCTTGTCCATTTACTTAAACCTATTTATTCTTTTTTCATGCATAAAAAGGAAGTGTGT
86046154 CCCTTGTATCGGGATTGTTAGAGATAAATAATTTTTTGCATTGTTCCCCTAACTTCCTCCTATCT
66 CCCTTGTATCGGGATTGTTAGAGATAAATAATTTTTTGCATTGTTCCCCTAACTTCCTCCTATCT
86046219 TCCTCACTAGGTTGGTGACCACATTTAAAAGTTTTAGTCTTGCCATTGATTTTCATAGTTAATTA
131 TCCTCACTAGGTTGGTGACCACATTTAAAAGTTTTAGTCTTGCCATTGATTTTCATAGTTAATTA
86046284 TTTTTCTCTAAACCAATGATAGATCTAAAAGTGGCCAGGAAAGGTCTACCTAATACGATCAGTAT
196 TTTTTCTCTAAACCAATGATAGATCTAAAAGTGGCCAGGAAAGGTCTACCTAATACGATCAGTAT
*
86046349 CTCACGATCTTCCTCAAAATCAAGCATCCCAAAATCTGTTGAAATAATGAAACTGCGCACTTTGA
261 CTCACGATCTTCCTCAAAATCAAGCATCCCAAAATCTGTCGAAATAATGAAACTGCGCACTTTGA
86046414 CTAACACATCCTCTAGTACAGGTTTTGGATGAACTGAAGAT
326 CTAACACATCCTCTAGTACAGGTTTTGGATGAACTGAAGAT
86046455 CTATCAGTCA
Statistics
Matches: 365, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
366 365 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (366 bp):
TATGCCCGCTTGTCCATTTACTTAAACCTATTTATTCTTTTTTCATGCATAAAAAGGAAGTGTGT
CCCTTGTATCGGGATTGTTAGAGATAAATAATTTTTTGCATTGTTCCCCTAACTTCCTCCTATCT
TCCTCACTAGGTTGGTGACCACATTTAAAAGTTTTAGTCTTGCCATTGATTTTCATAGTTAATTA
TTTTTCTCTAAACCAATGATAGATCTAAAAGTGGCCAGGAAAGGTCTACCTAATACGATCAGTAT
CTCACGATCTTCCTCAAAATCAAGCATCCCAAAATCTGTCGAAATAATGAAACTGCGCACTTTGA
CTAACACATCCTCTAGTACAGGTTTTGGATGAACTGAAGAT
Found at i:86050410 original size:74 final size:72
Alignment explanation
Indices: 86050324--86050465 Score: 223
Period size: 74 Copynumber: 1.9 Consensus size: 72
86050314 AAAATAAGCC
* *
86050324 ATTTTATGCATGAAAACTATATAATAAAGA-ATAAAATCACGTTTTAATAATTTCTATGACCTAA
1 ATTTTATACATGAAAACTATATAATAAA-ACATAAAATCACATTTTAATAATTTC--TGACCTAA
86050388 TTTCATGCTT
63 TTTCATGCTT
*
86050398 ATTTTATACATGAAAACTATATAATAAAACATAAAATCACATTTTAATAATTTCTGTCCTAATTT
1 ATTTTATACATGAAAACTATATAATAAAACATAAAATCACATTTTAATAATTTCTGACCTAATTT
86050463 CAT
66 CAT
86050466 ACTTTCACAT
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 13 0.20
73 1 0.02
74 50 0.78
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (72 bp):
ATTTTATACATGAAAACTATATAATAAAACATAAAATCACATTTTAATAATTTCTGACCTAATTT
CATGCTT
Found at i:86053938 original size:49 final size:49
Alignment explanation
Indices: 86053640--86054198 Score: 448
Period size: 49 Copynumber: 11.6 Consensus size: 49
86053630 TGCTTGAGCT
* * * * *
86053640 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
* * * * *
86053686 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA-GACGAGT-GCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGA-TAGTC
* * * * *
86053734 AGTGTAAGA-CATGTTTGGGACAT-GCATTGGCCTCG-GGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGAT-AGTC
* * *
86053780 AGTATAAGA-TATGTCTGGGACAT-GCAACGG-CTACGA-GATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATGATGATAGTC
* * * *
86053824 AGTGCAAGACCATGTCTAGGACATGGCATCAG--TACGGAT-ATGCGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-C-GATGAT--GATAGTC
* ** * *
86053873 TAGTGTAAGATCATGTCT-ACAGCATAGCATCAGCCTCGATGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGA-CATGGCATCGGCCTCGATGATGATAGTC
* * * * *
86053923 AGTGTAAGACCATGTCTAGGACATCGCATCGGCATGGAT-ATGCGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAT--GATAGTC
*
86053972 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATATTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
* * * * * *
86054022 AGTGTAAAACCATGTTTGGGACACGGCATCAGCAC-GGAT-ATG-TGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATGATGAT-AG-TC
86054071 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
86054121 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
86054170 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
86054199 AGGCACCTTA
Statistics
Matches: 419, Mismatches: 58, Indels: 69
0.77 0.11 0.13
Matches are distributed among these distances:
44 10 0.02
45 17 0.04
46 65 0.16
47 28 0.07
48 29 0.07
49 153 0.37
50 105 0.25
51 10 0.02
52 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGTC
Found at i:86054002 original size:99 final size:99
Alignment explanation
Indices: 86053640--86054198 Score: 504
Period size: 99 Copynumber: 5.8 Consensus size: 99
86053630 TGCTTGAGCT
* *
86053640 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC--ATTAT--GAGAGCCAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTAGGACATCGCATCAG-CACGGA-TATGCGAGAGCTAGTGTAAGACCAT
* * * * *
86053699 GTTTGGGACATGGCATCGGCATTGA-GACGAGT-GCC
64 GTCTGGGACATGGCATCGGCCTCGATGATGA-TAGTC
* * ** * * * * *
86053734 AGTGTAAGA-CATGTTTGGGACAT-GCATTGGCCTCGG-GA--CGTA-AGCCAGTATAAGA-TAT
1 AGTGTAAGACCATGTCTAGGACATCGCATCAG-CACGGATATGCG-AGAGCTAGTGTAAGACCAT
*
86053792 GTCTGGGACAT-GCAACGG-CTACGA-GATG-T-GTC
64 GTCTGGGACATGGCATCGGCCT-CGATGATGATAGTC
* * * *
86053824 AGTGCAAGACCATGTCTAGGACATGGCATCAGTACGGATATGCGAGAGCTAGTGTAAGATCATGT
1 AGTGTAAGACCATGTCTAGGACATCGCATCAGCACGGATATGCGAGAGCTAGTGTAAGACCATGT
** * *
86053889 CT-ACAGCATAGCATCAGCCTCGATGATGATAGTC
66 CTGGGA-CATGGCATCGGCCTCGATGATGATAGTC
* *
86053923 AGTGTAAGACCATGTCTAGGACATCGCATCGGCATGGATATGCGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTAGGACATCGCATCAGCACGGATATGCGAGAGCTAGTGTAAGACCATGT
*
86053988 CTGGGACATGGCATCGGCCTCGATGATGATATTC
66 CTGGGACATGGCATCGGCCTCGATGATGATAGTC
* * * *
86054022 AGTGTAAAACCATGTTTGGGACA-CGGCATCAGCACGGATATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTAGGACATC-GCATCAGCACGGATATGCGAGAGCTAGTGTAAGACCATG
86054086 TCTGGGACATGGCATCGGCCTCGATGATGATAGTC
65 TCTGGGACATGGCATCGGCCTCGATGATGATAGTC
* * * * *
86054121 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATGAT--GATAG-TCAGTGTAAGACCA
1 AGTGTAAGACCATGTCTAGGACATCGCATCAGCAC-GGAT-ATGCGAGAGCT-AGTGTAAGACCA
86054182 TGTCTGGGACATGGCAT
63 TGTCTGGGACATGGCAT
86054199 AGGCACCTTA
Statistics
Matches: 389, Mismatches: 52, Indels: 44
0.80 0.11 0.09
Matches are distributed among these distances:
90 11 0.03
91 16 0.04
92 17 0.04
93 13 0.03
94 58 0.15
95 10 0.03
96 8 0.02
97 7 0.02
98 36 0.09
99 210 0.54
100 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (99 bp):
AGTGTAAGACCATGTCTAGGACATCGCATCAGCACGGATATGCGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGGCCTCGATGATGATAGTC
Found at i:86054143 original size:148 final size:148
Alignment explanation
Indices: 86053923--86054198 Score: 430
Period size: 148 Copynumber: 1.9 Consensus size: 148
86053913 GATGATAGTC
*
86053923 AGTGTAAGACCATGTCTAGGACATCGCATCGGCATGGATATGCGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTAGGACATCGCATCGGCATCGATAT-CGAGAGCTAGTGTAAGACCATGT
* *
86053988 CTGGGACATGGCATCGGCCTCGATGATGATATTCAGTGTAAAACCATGTTTGGGACACGGCATCA
65 CTGGGACATGGCATCGGCCTCGATGATGATAGTCAGTGTAAAACCATGTCTGGGACACGGCATCA
86054053 GCACGGATATGTGAGAGCT
130 GCACGGATATGTGAGAGCT
* * * *
86054072 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAT-GATAG-TCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTAGGACATCGCATCGGCATCGAT-ATCGAGAGCT-AGTGTAAGACCATG
* *
86054135 TCTGGGACATGGCATCGGCCTCGATGATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCAT
64 TCTGGGACATGGCATCGGCCTCGATGATGATAGTCAGTGTAAAACCATGTCTGGGACACGGCAT
86054199 AGGCACCTTA
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
147 1 0.01
148 78 0.67
149 35 0.30
150 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (148 bp):
AGTGTAAGACCATGTCTAGGACATCGCATCGGCATCGATATCGAGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGGCCTCGATGATGATAGTCAGTGTAAAACCATGTCTGGGACACGGCATCAG
CACGGATATGTGAGAGCT
Found at i:86061702 original size:22 final size:22
Alignment explanation
Indices: 86061662--86061746 Score: 91
Period size: 22 Copynumber: 3.9 Consensus size: 22
86061652 AGAATGGCCA
* **
86061662 AGAGCCATAAACAAAATGGTTAT
1 AGAGCCATAATCAGGATGG-TAT
* * *
86061685 A-AACCATAATCAGGATGGCAC
1 AGAGCCATAATCAGGATGGTAT
*
86061706 AGAGCCATAATCAGGATGATAT
1 AGAGCCATAATCAGGATGGTAT
86061728 AGAGCCATAATCAGGATGG
1 AGAGCCATAATCAGGATGG
86061747 CACAAAGCTA
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
21 2 0.04
22 47 0.94
23 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (22 bp):
AGAGCCATAATCAGGATGGTAT
Found at i:86062299 original size:54 final size:54
Alignment explanation
Indices: 86062245--86062571 Score: 487
Period size: 54 Copynumber: 6.1 Consensus size: 54
86062235 TTGCCCTACA
* * * * *
86062245 AGGGTATTTCGATAATTTTACACTACAAGGGTATTTTGGTAATTGT-ACACTA-CA
1 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATT-TCACA-AACCG
86062299 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
1 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
*
86062353 AGGGTATTTTGGTAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
1 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
*
86062407 AGGGTATTTTGGTAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
1 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
*
86062461 AGGGTATTTTGGTAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
1 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
* * * * * * *
86062515 AGGGTATTTCGATAATTCTACAATTCGAGGGTATTTTGGTAATTTTACAAACCG
1 AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
86062569 AGG
1 AGG
86062572 TCTTAACGAC
Statistics
Matches: 257, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
53 2 0.01
54 255 0.99
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (54 bp):
AGGGTATTTTGATAATTGTACACTACAAGGGTATTTCGGTAATTTCACAAACCG
Found at i:86062564 original size:27 final size:27
Alignment explanation
Indices: 86062241--86062564 Score: 305
Period size: 27 Copynumber: 12.0 Consensus size: 27
86062231 CATTTTGCCC
* *
86062241 TACAAGGGTATTTCGATAATTTTACAC
1 TACAAGGGTATTTCGGTAATTTTACAA
* * *
86062268 TACAAGGGTATTTTGGTAATTGTACAC
1 TACAAGGGTATTTCGGTAATTTTACAA
* * * *
86062295 TACAAGGGTATTTTGATAATTGTACAC
1 TACAAGGGTATTTCGGTAATTTTACAA
*
86062322 TACAAGGGTATTTCGGTAATTTCACAA
1 TACAAGGGTATTTCGGTAATTTTACAA
* * * *
86062349 -ACCGAGGGTATTTTGGTAATTGTACAC
1 TA-CAAGGGTATTTCGGTAATTTTACAA
*
86062376 TACAAGGGTATTTCGGTAATTTCACAA
1 TACAAGGGTATTTCGGTAATTTTACAA
* * * *
86062403 -ACCGAGGGTATTTTGGTAATTGTACAC
1 TA-CAAGGGTATTTCGGTAATTTTACAA
*
86062430 TACAAGGGTATTTCGGTAATTTCACAA
1 TACAAGGGTATTTCGGTAATTTTACAA
* * * *
86062457 -ACCGAGGGTATTTTGGTAATTGTACAC
1 TA-CAAGGGTATTTCGGTAATTTTACAA
*
86062484 TACAAGGGTATTTCGGTAATTTCACAA
1 TACAAGGGTATTTCGGTAATTTTACAA
* * *
86062511 -ACCGAGGGTATTTCGATAATTCTACAA
1 TA-CAAGGGTATTTCGGTAATTTTACAA
* * *
86062538 TTCGAGGGTATTTTGGTAATTTTACAA
1 TACAAGGGTATTTCGGTAATTTTACAA
86062565 ACCGAGGTCT
Statistics
Matches: 242, Mismatches: 47, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
26 4 0.02
27 235 0.97
28 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35
Consensus pattern (27 bp):
TACAAGGGTATTTCGGTAATTTTACAA
Found at i:86063482 original size:10 final size:10
Alignment explanation
Indices: 86063467--86063491 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86063457 TCTGATTGTC
86063467 GAACCCAAAG
1 GAACCCAAAG
86063477 GAACCCAAAG
1 GAACCCAAAG
86063487 GAACC
1 GAACC
86063492 AAGAGTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.32, G:0.20, T:0.00
Consensus pattern (10 bp):
GAACCCAAAG
Found at i:86071650 original size:18 final size:17
Alignment explanation
Indices: 86071627--86071660 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
86071617 GTTTACCTAT
86071627 TATTATTATTCGTTTATC
1 TATTATTATT-GTTTATC
86071645 TATTATTATTGTTTAT
1 TATTATTATTGTTTAT
86071661 ATTACAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTATTATTGTTTATC
Found at i:86071663 original size:15 final size:17
Alignment explanation
Indices: 86071627--86071664 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
86071617 GTTTACCTAT
86071627 TATTATTATTCGTTTATC
1 TATTATTATTCGTTTA-C
86071645 TATTATTATT-GTTTA-
1 TATTATTATTCGTTTAC
86071660 TATTA
1 TATTA
86071665 CAGGCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.25
17 5 0.25
18 10 0.50
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (17 bp):
TATTATTATTCGTTTAC
Found at i:86087060 original size:18 final size:18
Alignment explanation
Indices: 86087037--86087072 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86087027 AGGTTAAATG
*
86087037 TGAAAAATTAGAATTTAA
1 TGAAAAATTAAAATTTAA
86087055 TGAAAAATTAAAATTTAA
1 TGAAAAATTAAAATTTAA
86087073 ATAAGTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (18 bp):
TGAAAAATTAAAATTTAA
Found at i:86089874 original size:19 final size:19
Alignment explanation
Indices: 86089837--86089874 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
86089827 ACCTGTCAAA
*
86089837 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
86089856 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
86089875 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:86092581 original size:22 final size:22
Alignment explanation
Indices: 86092565--86092607 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
86092555 AATGGTTATA
86092565 AACCATAATCAAGATGGCACAC
1 AACCATAATCAAGATGGCACAC
*
86092587 AGCCATAATCAAGATGGCACA
1 AACCATAATCAAGATGGCACA
86092608 AGGCTATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.26, G:0.16, T:0.14
Consensus pattern (22 bp):
AACCATAATCAAGATGGCACAC
Found at i:86092757 original size:27 final size:27
Alignment explanation
Indices: 86092673--86092758 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
86092663 ATCGGTATAT
* * *
86092673 AGCCACGGGTAAATATGATTGACACAG
1 AGCCACAGGTAAATATGATTGGCACAA
* * * **
86092700 AGTCATCA-ATAAATATGATAGGCACTT
1 AGCCA-CAGGTAAATATGATTGGCACAA
86092727 AGCCACAGGTAAATATGATTGGCACAA
1 AGCCACAGGTAAATATGATTGGCACAA
86092754 AGCCA
1 AGCCA
86092759 TAATCAAGAT
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
26 2 0.04
27 42 0.93
28 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (27 bp):
AGCCACAGGTAAATATGATTGGCACAA
Found at i:86093224 original size:27 final size:27
Alignment explanation
Indices: 86093128--86093216 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
86093118 TGCCCTAGAG
* * * *
86093128 GGGTATTTTGCTAATTTTACATTACAA
1 GGGTATTTCGGTAATTATACACTACAA
* *
86093155 GGGTATATCGGTAACTATACACTACAA
1 GGGTATTTCGGTAATTATACACTACAA
*
86093182 GGGTATTTCGGTAATTATACACTATAA
1 GGGTATTTCGGTAATTATACACTACAA
86093209 GGGTATTT
1 GGGTATTT
86093217 TAGTAATTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTATACACTACAA
Found at i:86093267 original size:27 final size:27
Alignment explanation
Indices: 86093236--86093395 Score: 155
Period size: 27 Copynumber: 6.0 Consensus size: 27
86093226 AAAAAACTTG
* **
86093236 GGGTATTTCGGTAATTTTACAATTTGA
1 GGGTATTTCGATAATTTTACAAACTGA
* * *
86093263 AGGTATTTAGGTAATTTTACAAACT-A
1 GGGTATTTCGATAATTTTACAAACTGA
*
86093289 GGGGTA-TTCGATAATTTTACAAACCG-
1 -GGGTATTTCGATAATTTTACAAACTGA
* *
86093315 GGAGTATTTTGATAATTTTACAAACTAA
1 GG-GTATTTCGATAATTTTACAAACTGA
* * * * *
86093343 AGGTATTTCGGTAAATTTACAATCCGA
1 GGGTATTTCGATAATTTTACAAACTGA
86093370 GGGTATTTCGATAATTTTACAAACTG
1 GGGTATTTCGATAATTTTACAAACTG
86093396 GAGTCTACAC
Statistics
Matches: 105, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
25 2 0.02
26 20 0.19
27 82 0.78
28 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTGA
Found at i:86093335 original size:80 final size:81
Alignment explanation
Indices: 86093238--86093393 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 81
86093228 AAAACTTGGG
* ** * *
86093238 GTATTTCGGTAATTTTACAATTTGAAGGTATTTAGGTAATTTTACAAACTAG-GGGTA-TTCGAT
1 GTATTTCGATAATTTTACAAACTAAAGGTATTTAGGTAAATTTACAAAC-AGAGGGTATTTCGAT
86093301 AATTTTACAAACCGGGA
65 AATTTTACAAACCGGGA
* * * *
86093318 GTATTTTGATAATTTTACAAACTAAAGGTATTTCGGTAAATTTACAATCCGAGGGTATTTCGATA
1 GTATTTCGATAATTTTACAAACTAAAGGTATTTAGGTAAATTTACAAACAGAGGGTATTTCGATA
86093383 ATTTTACAAAC
66 ATTTTACAAAC
86093394 TGGAGTCTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.02
80 46 0.71
81 18 0.28
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (81 bp):
GTATTTCGATAATTTTACAAACTAAAGGTATTTAGGTAAATTTACAAACAGAGGGTATTTCGATA
ATTTTACAAACCGGGA
Found at i:86093386 original size:54 final size:54
Alignment explanation
Indices: 86093183--86093394 Score: 196
Period size: 54 Copynumber: 3.9 Consensus size: 54
86093173 ACACTACAAG
* * *** * * ***
86093183 GGTATTTCGGTAATTATACACTATAAGGGTATTTTAG-TAATTTAAAAAACTTGG
1 GGTATTTCGGTAATTTTACAATCCGAGGGTA-TTTAGATAATTTTACAAACTAAA
** * * **
86093237 GGTATTTCGGTAATTTTACAATTTGAAGGTATTTAGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAATCCGAGGGTATTTAGATAATTTTACAAACTAAA
* * *
86093291 GGTA-TTCGATAATTTTACAAACCG-GGAGTATTTTGATAATTTTACAAACTAAA
1 GGTATTTCGGTAATTTTACAATCCGAGG-GTATTTAGATAATTTTACAAACTAAA
* *
86093344 GGTATTTCGGTAAATTTACAATCCGAGGGTATTTCGATAATTTTACAAACT
1 GGTATTTCGGTAATTTTACAATCCGAGGGTATTTAGATAATTTTACAAACT
86093395 GGAGTCTACA
Statistics
Matches: 133, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 47 0.35
54 83 0.62
55 2 0.02
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAATCCGAGGGTATTTAGATAATTTTACAAACTAAA
Found at i:86093399 original size:80 final size:79
Alignment explanation
Indices: 86093220--86093399 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 79
86093210 GGTATTTTAG
* * * * ** * *
86093220 TAATTTAAAAAACTTGGGGTATTTCGGTAATTTTACAATTTGAAGGTATTTAGGTAATTTTACAA
1 TAATTTTACAAAC-TGGAGTATTTCGATAATTTTACAAACTAAAGGTATTTAGGTAAATTTACAA
*
86093285 ACTAGGGGTATTCGA
65 ACGAGGGGTATTCGA
* * *
86093300 TAATTTTACAAACCGGGAGTATTTTGATAATTTTACAAACTAAAGGTATTTCGGTAAATTTACAA
1 TAATTTTACAAA-CTGGAGTATTTCGATAATTTTACAAACTAAAGGTATTTAGGTAAATTTACAA
*
86093365 TCCGA-GGGTATTTCGA
65 -ACGAGGGGTA-TTCGA
86093381 TAATTTTACAAACTGGAGT
1 TAATTTTACAAACTGGAGT
86093400 CTACACGACC
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
80 63 0.76
81 20 0.24
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (79 bp):
TAATTTTACAAACTGGAGTATTTCGATAATTTTACAAACTAAAGGTATTTAGGTAAATTTACAAA
CGAGGGGTATTCGA
Found at i:86105106 original size:29 final size:30
Alignment explanation
Indices: 86105074--86105149 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 30
86105064 TCGGCTATTG
86105074 ATTATGAAAAGGGATGGTGATAACCATC-A
1 ATTATGAAAAGGGATGGTGATAACCATCGA
* * *
86105103 ATTATGGAAAGGGGTGGTGATGACCATCGA
1 ATTATGAAAAGGGATGGTGATAACCATCGA
* *
86105133 ACTATAAAAAGGGATGG
1 ATTATGAAAAGGGATGG
86105150 CTTCGGGTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 25 0.64
30 14 0.36
ACGTcount: A:0.38, C:0.09, G:0.30, T:0.22
Consensus pattern (30 bp):
ATTATGAAAAGGGATGGTGATAACCATCGA
Found at i:86105180 original size:29 final size:30
Alignment explanation
Indices: 86105139--86105208 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 30
86105129 TCGAACTATA
* *
86105139 AAAAGGGATGGCTTCGGGTATC-AATCATT
1 AAAAGGGATGGCTTCGGCTATCAAATCATG
*
86105168 AAAAGGGATGGCTTCGGCTATCAAATTATG
1 AAAAGGGATGGCTTCGGCTATCAAATCATG
86105198 AAAAGGGATGG
1 AAAAGGGATGG
86105209 TAATGACCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 21 0.57
30 16 0.43
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.24
Consensus pattern (30 bp):
AAAAGGGATGGCTTCGGCTATCAAATCATG
Found at i:86105247 original size:30 final size:30
Alignment explanation
Indices: 86105195--86105266 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
86105185 CTATCAAATT
* * **
86105195 ATGAAAAGGGATGGTAATGACCATTGAACC
1 ATGAAAAGGGATGATAACGACCATCAAACC
* **
86105225 ATGAAAAGGGATGATGACGACCATCAAATT
1 ATGAAAAGGGATGATAACGACCATCAAACC
86105255 ATGAAAAGGGAT
1 ATGAAAAGGGAT
86105267 AGCTTTTACT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.19
Consensus pattern (30 bp):
ATGAAAAGGGATGATAACGACCATCAAACC
Found at i:86105657 original size:13 final size:13
Alignment explanation
Indices: 86105634--86105667 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
86105624 AAACATATTA
86105634 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
86105648 TAAAATTTTGTGT
1 TAAAATTTTGTGT
86105661 TAGAAAT
1 TA-AAAT
86105668 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:86107054 original size:39 final size:40
Alignment explanation
Indices: 86106957--86107054 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
86106947 CGGATGATAA
*
86106957 CCGGGCTAAGAT-CCAAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAA-ATCCCGAAGGCATTTGTGCTAGTGACTATAT
* * *
86106997 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTCTAT
1 CCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTATAT
86107037 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAATCCCGAAGG
86107055 TACTTGAGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 16 0.31
40 36 0.69
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:86107169 original size:40 final size:40
Alignment explanation
Indices: 86107109--86107214 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
86107099 TAATACGCTC
* *
86107109 GACTATATCCGGGCTGAGTCCCGAAGGCATTTGTGCTAGT
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
*
86107149 GATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* * *
86107189 TACTCTATCC-GGCTAAATCCCGAAGG
1 GACTATATCCGGGCTAAGTCCCGAAGG
86107215 TACTTGAGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 15 0.25
40 44 0.75
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
GACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:86107221 original size:160 final size:160
Alignment explanation
Indices: 86106972--86107268 Score: 576
Period size: 160 Copynumber: 1.9 Consensus size: 160
86106962 CTAAGATCCA
*
86106972 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTCTAT
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAT
86107037 CCGGCTAAATCCCGAAGGTACTTGAGTTTGGAAATGAGCAGTCTTGCTGTAATAACTTCAATTAA
66 CCGGCTAAATCCCGAAGGTACTTGAGTTTGGAAATGAGCAGTCTTGCTGTAATAACTTCAATTAA
86107102 TACGCTCGACTATATCCGGGCTGAGTCCCG
131 TACGCTCGACTATATCCGGGCTGAGTCCCG
*
86107132 AAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAT
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAT
86107197 CCGGCTAAATCCCGAAGGTACTTGAGTTTGGAAATGAGCAGTCTTGCTGTAATAACTTCAATTAA
66 CCGGCTAAATCCCGAAGGTACTTGAGTTTGGAAATGAGCAGTCTTGCTGTAATAACTTCAATTAA
86107262 TACGCTC
131 TACGCTC
86107269 ATAAATCCAA
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 135 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (160 bp):
AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAT
CCGGCTAAATCCCGAAGGTACTTGAGTTTGGAAATGAGCAGTCTTGCTGTAATAACTTCAATTAA
TACGCTCGACTATATCCGGGCTGAGTCCCG
Found at i:86114475 original size:28 final size:28
Alignment explanation
Indices: 86114439--86114513 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
86114429 TCAAATATGT
* *
86114439 CACTCAGTGTACGAAATATTGAGAATGG
1 CACTTAGTGTACGAAATATTGAGAATGA
*
86114467 CACTTAGTGTACGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
86114495 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTACGAAATAT
86114514 CAAATGATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:86121247 original size:28 final size:28
Alignment explanation
Indices: 86121181--86121262 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 28
86121171 TCAAATATGG
* *
86121181 CACTTAGTGTACGAAATATTGAGAATGG
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
86121209 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* *
86121237 CACTTAATGTGCAAAATA-T-AGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
86121263 TTCAAAGGGC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.15
27 1 0.02
28 40 0.83
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:86147406 original size:28 final size:28
Alignment explanation
Indices: 86147375--86147520 Score: 116
Period size: 29 Copynumber: 5.1 Consensus size: 28
86147365 GTGAGCATGG
86147375 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATAAATGTGA-TTGGGCCGGATGGGCC
* ** *
86147403 ATATAAATGAGATTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCGGATGGGCC
* * * * *
86147431 ATATGAATGTCAATTTGGCCTGATGGGCT
1 ATATAAATGT-GATTGGGCCGGATGGGCC
* * *
86147460 ATATGAACGTGAATTGGGTCGGATGGGCC
1 ATATAAATGTG-ATTGGGCCGGATGGGCC
* *
86147489 ATATAAATGAGATTGGGCC-TAGTGGGCC
1 ATATAAATGTGATTGGGCCGGA-TGGGCC
86147517 ATAT
1 ATAT
86147521 GCATGTATGT
Statistics
Matches: 92, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
27 1 0.01
28 42 0.46
29 49 0.53
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGGATGGGCC
Found at i:86155251 original size:29 final size:28
Alignment explanation
Indices: 86155168--86155318 Score: 126
Period size: 29 Copynumber: 5.4 Consensus size: 28
86155158 GTGAGCATGG
* *
86155168 ATAT-AATGTGATTTGGGCCAGATGGACC
1 ATATGAATGTGA-TTGGGCCTGATGGGCC
** * * *
86155196 ATAAAAATGAGATTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
*
86155224 ATATGAATGTGAATTTGGCCTGATGGGCC
1 ATATGAATGTG-ATTGGGCCTGATGGGCC
* * *
86155253 ATATGAACGTGAATTGGGTCGGATGGGCC
1 ATATGAATGTG-ATTGGGCCTGATGGGCC
* * *
86155282 ATATAAATGAGATTGGGCTTG-TGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
*
86155309 ATATGCATGT
1 ATATGAATGT
86155319 ATGTAGGGTT
Statistics
Matches: 96, Mismatches: 25, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
27 13 0.14
28 30 0.31
29 53 0.55
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTGATGGGCC
Found at i:86160741 original size:20 final size:20
Alignment explanation
Indices: 86160704--86160741 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86160694 AATATAATGT
*
86160704 AAATAATAGAAATTAAATAA
1 AAATAATAGAAATGAAATAA
86160724 AAATAATTAG-AATGAAAT
1 AAATAA-TAGAAATGAAAT
86160742 TAAATCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (20 bp):
AAATAATAGAAATGAAATAA
Done.