Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 261 of 310
Found at i:86160752 original size:25 final size:28
Alignment explanation
Indices: 86160685--86160753 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 28
86160675 ATAAAGGGGG
*
86160685 ATTAAATCTAATATAATGTAAATAATAGAA
1 ATTAAATCTAA-ATAATGT-AAGAATAGAA
**
86160715 ATTAAATAAAAATAAT-T-AGAAT-GAA
1 ATTAAATCTAAATAATGTAAGAATAGAA
86160740 ATTAAATCTAAATA
1 ATTAAATCTAAATA
86160754 TATCAAGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
25 15 0.44
26 4 0.12
28 1 0.03
29 5 0.15
30 9 0.26
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (28 bp):
ATTAAATCTAAATAATGTAAGAATAGAA
Found at i:86187267 original size:16 final size:16
Alignment explanation
Indices: 86187248--86187279 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86187238 AATTGTTTTA
86187248 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
86187264 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
86187280 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:86187554 original size:50 final size:50
Alignment explanation
Indices: 86187490--86188071 Score: 519
Period size: 50 Copynumber: 11.5 Consensus size: 50
86187480 CTAGTACGCA
* * * * *
86187490 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTATACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * * ** *
86187540 TAGTAGCCTGCACTTAGTACTACACACTTGA-TTGAAGTTAAT-GGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA--CAATCTGGTACACG
* * *
86187591 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* *
86187641 TTGTAGCCT-CACTTAGTACTACACACGTGACCTAAGC-ATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAATCTGGTACACG
* ** * *
86187690 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAACTATC-GAGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTG-GTACACG
* * * ** *
86187741 TAGCAACCTGCACTTAGTACTACACATGCCACCTAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* ** *
86187791 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAA-AACTCTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA-TCTGGT--ACACG
* * * * ** *
86187843 TAGTAGACTGCACTTAGTACTATACACGTGACCTATCCATCTAATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* ** * * *
86187893 TAGTATCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTGGTACACG
* *
86187944 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *** *
86187994 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACAATCTGGTACACG
* *
86188046 TAGTAGCTTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
86188072 TGTGTTCTCA
Statistics
Matches: 425, Mismatches: 89, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
49 48 0.11
50 187 0.44
51 111 0.26
52 78 0.18
53 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:86187789 original size:101 final size:101
Alignment explanation
Indices: 86187591--86188073 Score: 528
Period size: 101 Copynumber: 4.8 Consensus size: 101
86187581 TGGGTATGCA
* * * * * *
86187591 TAGTAGCCTGCACTTAGTACTACACATGTGACC-TATCAATCCG-GTACACGTTGTAGCCT-CAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAAAACTAT-CGAGTACACATAGTAGCCTGCAC
* *
86187653 TTAGTACTACACACGTGACCTAAGC-ATCTGATACACG
65 TTAGTACTACACATGCGACCTAA-CAATCTGATACACG
* * * * *
86187690 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAACTATCGAGTACACATAGCAACCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAAAACTATCGAGTACACATAGTAGCCTGCACT
* * *
86187755 TAGTACTACACATGCCACCTAACAATCCGGTACACG
66 TAGTACTACACATGCGACCTAACAATCTGATACACG
* * * * *
86187791 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTCTCTTA-AACACATAGTAGACTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AAAACTATC-GAGTACACATAGTAGCCTGCA
* * * * * * *
86187855 CTTAGTACTATACACGTGACCTATCCATCTAATACATG
64 CTTAGTACTACACATGCGACCTAACAATCTGATACACG
* * * *
86187893 TAGTATCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAAAACTATCGAGTACACATAGTAGCCTGCACT
*
86187958 TAGTACTACACATGCGACCTAACAATCTGGTACACG
66 TAGTACTACACATGCGACCTAACAATCTGATACACG
* * * *
86187994 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTATCTTA-AACACATAGTAGCTTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AAAACTATC-GAGTACACATAGTAGCCTGCA
*
86188058 CATAGTACTACACATG
64 CTTAGTACTACACATG
86188074 TGTTCTCACA
Statistics
Matches: 315, Mismatches: 60, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
99 33 0.10
100 17 0.05
101 146 0.46
102 118 0.37
103 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAAAACTATCGAGTACACATAGTAGCCTGCACT
TAGTACTACACATGCGACCTAACAATCTGATACACG
Found at i:86187915 original size:203 final size:202
Alignment explanation
Indices: 86187591--86188071 Score: 702
Period size: 203 Copynumber: 2.4 Consensus size: 202
86187581 TGGGTATGCA
* * * * * *
86187591 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA-TC-CGGT--ACACGTTGTAGCCT-C
1 TAGTAGCCTGCACTTAGTATTACACACGTGACCTA-AAACTCTC-TTAAACACATAGTAG-CTGC
* *
86187651 ACTTAGTACTACACACGTGACCTAAGCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
63 ACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACA
86187716 AGTGATCGAAACTATCGAGTACACATAGCAACCTGCACTTAGTACTACACATGCCACCTAACAAT
128 AGTGATCGAAACTATCGAGTACACATAGCAACCTGCACTTAGTACTACACATGCCACCTAACAAT
86187781 CCGGTACACG
193 CCGGTACACG
86187791 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTCTCTTAAACACATAGTAGACTGCAC
1 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTCTCTTAAACACATAGTAG-CTGCAC
* * * * *
86187856 TTAGTACTATACACGTGACCTATCCATCTAATACATGTAGTATCCTGCACTTAGTACTACACACG
65 TTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACAAG
* * * * *
86187921 TGATCGAAACTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCT
130 TGATCGAAACTATCGAGTACACATAGCAACCTGCACTTAGTACTACACATGCCACCTAACAATCC
86187986 GGTACACG
195 GGTACACG
*
86187994 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTATCTTAAACACATAGTAGCTTGCAC
1 TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTCTCTTAAACACATAGTAGC-TGCAC
*
86188059 ATAGTACTACACA
65 TTAGTACTACACA
86188072 TGTGTTCTCA
Statistics
Matches: 253, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
199 2 0.01
200 36 0.14
201 1 0.00
202 12 0.05
203 202 0.80
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (202 bp):
TAGTAGCCTGCACTTAGTATTACACACGTGACCTAAAACTCTCTTAAACACATAGTAGCTGCACT
TAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACAAGT
GATCGAAACTATCGAGTACACATAGCAACCTGCACTTAGTACTACACATGCCACCTAACAATCCG
GTACACG
Found at i:86188454 original size:19 final size:20
Alignment explanation
Indices: 86188426--86188472 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
86188416 AAGAACATGT
86188426 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
86188447 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
86188466 TATATAT
1 TATATAT
86188473 ACTTACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:86208439 original size:13 final size:13
Alignment explanation
Indices: 86208423--86208455 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86208413 ATTGATTAAA
*
86208423 TTAGTTAATTAGT
1 TTAGATAATTAGT
86208436 TTAGATAATTAGT
1 TTAGATAATTAGT
86208449 TTA-ATAA
1 TTAGATAA
86208456 AAAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:86210410 original size:28 final size:28
Alignment explanation
Indices: 86210348--86210469 Score: 174
Period size: 28 Copynumber: 4.4 Consensus size: 28
86210338 TATTAAGTCT
*
86210348 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
86210375 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
*
86210403 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * * *
86210431 GCACACTTAGTGCTGTACAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
86210460 GCACACTTAG
1 GCACACTTAG
86210470 CGCCAATCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.24
28 49 0.57
29 16 0.19
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:86214736 original size:31 final size:31
Alignment explanation
Indices: 86214675--86214737 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
86214665 AGATTGATAG
**
86214675 CAGGAATAAGGAGTATAAACTCCTTGAACCA
1 CAGGAATAAGGAGTATAAACTCCTCAAACCA
* *
86214706 CAGGAATGAGGAGTATGAACTCCTCAAACCA
1 CAGGAATAAGGAGTATAAACTCCTCAAACCA
86214737 C
1 C
86214738 CATGATCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (31 bp):
CAGGAATAAGGAGTATAAACTCCTCAAACCA
Found at i:86215827 original size:13 final size:13
Alignment explanation
Indices: 86215804--86215837 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
86215794 AGTAGTATTA
86215804 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
86215818 TAAAATTTTGTGT
1 TAAAATTTTGTGT
86215831 TAGAAAT
1 TA-AAAT
86215838 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:86217187 original size:40 final size:40
Alignment explanation
Indices: 86217141--86217384 Score: 357
Period size: 40 Copynumber: 6.1 Consensus size: 40
86217131 ACTAAGATCT
*
86217141 GAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
*
86217181 GAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* * *
86217221 GAAGGCATTTGTACTAGTTACTATATTCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* * *
86217261 AAAGGCATTTGTGCTAGTGGCTATATCCGAGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
*
86217301 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* * *
86217341 GAAGGCATTTGTGCGAGTTG-CTATATCC-AGCTAAATCCC
1 GAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
86217380 GAAGG
1 GAAGG
86217385 TACTTGGGTT
Statistics
Matches: 185, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 14 0.08
40 169 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
Found at i:86220394 original size:6 final size:6
Alignment explanation
Indices: 86220383--86220429 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
86220373 AATCCTCTTA
* * *
86220383 TATTTT TATTTT TATTTT TATTCT TCTTTT TATTTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTT
86220430 CAATTTTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:86220436 original size:24 final size:25
Alignment explanation
Indices: 86220384--86220449 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
86220374 ATCCTCTTAT
*
86220384 ATTTTTATTTTTATTTTTATTCTTC
1 ATTTTTATTTTTATTTTCATTCTTC
86220409 -TTTTTATTTTTATTTTCA-T-TTC
1 ATTTTTATTTTTATTTTCATTCTTC
*
86220431 AATTTTATTATTTTATTTT
1 ATTTTTA-T-TTTTATTTT
86220450 GAAAGACATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
22 3 0.08
23 6 0.17
24 18 0.50
25 9 0.25
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (25 bp):
ATTTTTATTTTTATTTTCATTCTTC
Found at i:86223368 original size:13 final size:13
Alignment explanation
Indices: 86223352--86223384 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86223342 TTTGATTAAA
*
86223352 TTAGTTAATTAGT
1 TTAGATAATTAGT
86223365 TTAGATAATTAGT
1 TTAGATAATTAGT
86223378 TTA-ATAA
1 TTAGATAA
86223385 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:86226933 original size:14 final size:14
Alignment explanation
Indices: 86226914--86226940 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86226904 TTCCTGAGCC
86226914 TAGGGGCAAAAGTT
1 TAGGGGCAAAAGTT
86226928 TAGGGGCAAAAGT
1 TAGGGGCAAAAGT
86226941 GTAATTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.37, T:0.19
Consensus pattern (14 bp):
TAGGGGCAAAAGTT
Found at i:86227434 original size:46 final size:46
Alignment explanation
Indices: 86227384--86227556 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
86227374 TGGTTGAGCA
*
86227384 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
86227430 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
86227477 TCTGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
86227523 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86227557 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 59 0.59
47 26 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:86227540 original size:93 final size:93
Alignment explanation
Indices: 86227381--86227551 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
86227371 GGATGGTTGA
* * *
86227381 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
86227446 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
86227474 GCATCTGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
86227539 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
86227552 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:86234661 original size:28 final size:28
Alignment explanation
Indices: 86234621--86234684 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
86234611 TGGGAAGTAG
* * *
86234621 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
*
86234649 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
86234677 TTGGGCCT
1 TTGGGCCT
86234685 AAAGTGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:86235037 original size:27 final size:27
Alignment explanation
Indices: 86235001--86235259 Score: 285
Period size: 27 Copynumber: 9.7 Consensus size: 27
86234991 TAATAAAGAT
* *
86235001 AAATTACTGAAATACGCTCTATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
86235028 AAATTGCTGAAATACCCTCGATTTCTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
86235055 AGATTA-TCGAAATACCCTCGA-TTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
86235081 AAATTATTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
86235108 AAATTA-TGAAACACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
86235134 AAATTACCGAAATACCTTTGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
86235161 AAATTATTGAAATACCCT-TATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
86235187 AAATTA-TCGAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
86235214 AAATTACCGAAACACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
86235241 AAATTAATAGAAATACCCT
1 AAATTACT-GAAATACCCT
86235260 TGTAGTGTAA
Statistics
Matches: 195, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.01
26 67 0.34
27 119 0.61
28 8 0.04
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:86235082 original size:53 final size:54
Alignment explanation
Indices: 86235001--86235259 Score: 276
Period size: 53 Copynumber: 4.8 Consensus size: 54
86234991 TAATAAAGAT
* * ** *
86235001 AAATTA-CTGAAATACGCTCTATTTGTAAAATTGCTGAAATACCCTCGATTTCTA
1 AAATTATC-GAAATACCCTCGATTTGTAAAATTAATGAAATACCCTCGATTTGTA
* * *
86235055 AGATTATCGAAATACCCTCGA-TTGTAAAATTATTGAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTAATGAAATACCCTCGATTTGTA
* * ** * * *
86235108 AAATTAT-GAAACACCTTCGATTTGTAAAATTACCGAAATACCTTTGATTTATA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTAATGAAATACCCTCGATTTGTA
* *
86235161 AAATTATTGAAATACCCT-TATTTGTAAAATT-ATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTAAT-GAAATACCCTCGATTTGTA
* * *
86235214 AAATTACCGAAACACCCCCGATTTGTAAAATTAATAGAAATACCCT
1 AAATTATCGAAATACCCTCGATTTGTAAAATTAAT-GAAATACCCT
86235260 TGTAGTGTAA
Statistics
Matches: 169, Mismatches: 30, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
52 11 0.07
53 109 0.64
54 36 0.21
55 13 0.08
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.34
Consensus pattern (54 bp):
AAATTATCGAAATACCCTCGATTTGTAAAATTAATGAAATACCCTCGATTTGTA
Found at i:86235163 original size:80 final size:80
Alignment explanation
Indices: 86235001--86235259 Score: 342
Period size: 80 Copynumber: 3.2 Consensus size: 80
86234991 TAATAAAGAT
* * * * * *
86235001 AAATTACTGAAATACGCTCTATTTGTAAAATTGCTGAAATACCCTCGATTTCTAAGATTATCGAA
1 AAATTATTGAAATACCCTCTATTTGTAAAATT-ATGAAATACCCTCGATTTGTAAAATTACCGAA
86235066 ATACCCTCGA-TTGTA
65 ATACCCTCGATTTGTA
* * *
86235081 AAATTATTGAAATACCCTCAATTTGTAAAATTATGAAACACCTTCGATTTGTAAAATTACCGAAA
1 AAATTATTGAAATACCCTCTATTTGTAAAATTATGAAATACCCTCGATTTGTAAAATTACCGAAA
* * *
86235146 TACCTTTGATTTATA
66 TACCCTCGATTTGTA
86235161 AAATTATTGAAATACCCT-TATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAA
1 AAATTATTGAAATACCCTCTATTTGTAAAATTAT-GAAATACCCTCGATTTGTAAAATTACCGAA
* *
86235225 ACACCCCCGATTTGTA
65 ATACCCTCGATTTGTA
*
86235241 AAATTAATAGAAATACCCT
1 AAATT-ATTGAAATACCCT
86235260 TGTAGTGTAA
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
79 48 0.31
80 95 0.61
81 12 0.08
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.34
Consensus pattern (80 bp):
AAATTATTGAAATACCCTCTATTTGTAAAATTATGAAATACCCTCGATTTGTAAAATTACCGAAA
TACCCTCGATTTGTA
Found at i:86235268 original size:28 final size:28
Alignment explanation
Indices: 86235237--86235326 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 28
86235227 ACCCCCGATT
*
86235237 TGTAAAATTAATAGAAATACCCTTGTAG
1 TGTAAAATTACTAGAAATACCCTTGTAG
* * * *
86235265 TGTAAATTTGCCA-AAATACCCTTATAG
1 TGTAAAATTACTAGAAATACCCTTGTAG
* * *
86235292 TGTAAAATGACT-GACATACCCCTGTAG
1 TGTAAAATTACTAGAAATACCCTTGTAG
*
86235319 GGTAAAAT
1 TGTAAAAT
86235327 GACTGTTTTG
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
27 39 0.81
28 9 0.19
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (28 bp):
TGTAAAATTACTAGAAATACCCTTGTAG
Found at i:86242558 original size:26 final size:26
Alignment explanation
Indices: 86242522--86242574 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
86242512 CCACCATCCC
86242522 AGATAGGGTCTTACTCGCACACATAT
1 AGATAGGGTCTTACTCGCACACATAT
86242548 AGATAGGGTCTTACTCGCACACATAT
1 AGATAGGGTCTTACTCGCACACATAT
86242574 A
1 A
86242575 TCGGAGTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
AGATAGGGTCTTACTCGCACACATAT
Found at i:86242707 original size:56 final size:56
Alignment explanation
Indices: 86242554--86242707 Score: 200
Period size: 56 Copynumber: 2.8 Consensus size: 56
86242544 ATATAGATAG
* *
86242554 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACGTACAAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTACAAAACGT
** * * * *
86242610 GGTCTTACTCATACACATATATCGGAATCACAAATCAATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTACAAAACGT
* ** *
86242666 GGTCTTACTCGCACATATATATCAAAATCACATGTCGATGCC
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCC
86242708 TCATATACAT
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTACAAAACGT
Found at i:86247159 original size:79 final size:81
Alignment explanation
Indices: 86247023--86247207 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
86247013 TTGAATGATG
* *
86247023 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
86247087 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
86247102 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
86247164 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
86247182 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86247208 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:86247221 original size:40 final size:40
Alignment explanation
Indices: 86247024--86247207 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
86247014 TGAATGATGT
* * * *
86247024 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
86247064 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
86247104 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
86247142 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86247183 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86247208 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:86247229 original size:79 final size:79
Alignment explanation
Indices: 86247076--86247240 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
86247066 GGACTAAGAT
* * **
86247076 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
86247141 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
86247155 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
86247218 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86247234 CCGAAGG
1 CCGAAGG
86247241 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86259211 original size:120 final size:120
Alignment explanation
Indices: 86258979--86259237 Score: 280
Period size: 120 Copynumber: 2.2 Consensus size: 120
86258969 TTGAATGATG
* *
86258979 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
86259044 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTACGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * * *
86259099 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTCAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACT-AAGAT-CCGAAGGCA
* * * *
86259161 TTTGTGCGAGATACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
63 TTTGTACGAGATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
86259219 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
86259238 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
119 19 0.16
120 90 0.76
121 9 0.08
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:86259218 original size:40 final size:40
Alignment explanation
Indices: 86258979--86259204 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
86258969 TTGAATGATG
* * * *
86258979 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
86259019 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86259059 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86259099 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86259139 TCCGGG-TCAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86259180 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86259205 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.01
40 157 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86269786 original size:38 final size:38
Alignment explanation
Indices: 86269735--86269809 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
86269725 AATGGTAAGA
*
86269735 TACTTTATCAAACTGTCTTTCAAGTACACTGATACTGG
1 TACTTTATCAAACTGTCTTTCAAGTACACGGATACTGG
86269773 TACTTTATCAAACTGTCTTTCAAGTACACGGATACTG
1 TACTTTATCAAACTGTCTTTCAAGTACACGGATACTG
86269810 TTAATAATCG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (38 bp):
TACTTTATCAAACTGTCTTTCAAGTACACGGATACTGG
Found at i:86271296 original size:24 final size:24
Alignment explanation
Indices: 86271264--86271314 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
86271254 AATTTTATGA
86271264 CATAGCATTTTTGGTAAGGCAAAG
1 CATAGCATTTTTGGTAAGGCAAAG
86271288 CATAGCATTTTTGGTAAGGCAAAG
1 CATAGCATTTTTGGTAAGGCAAAG
86271312 CAT
1 CAT
86271315 TATATAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (24 bp):
CATAGCATTTTTGGTAAGGCAAAG
Found at i:86275825 original size:26 final size:26
Alignment explanation
Indices: 86275782--86275839 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
86275772 AAAAATTTAA
**
86275782 AATATAAAAATGCTAAAGATAGTTTTT
1 AATATAAAAA-GCTAAAGATAGAATTT
86275809 AATATAAAAA-CTAAAAGATAGAATTT
1 AATATAAAAAGCT-AAAGATAGAATTT
86275835 AATAT
1 AATAT
86275840 TTCAACATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.07
26 16 0.57
27 10 0.36
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (26 bp):
AATATAAAAAGCTAAAGATAGAATTT
Found at i:86277101 original size:22 final size:22
Alignment explanation
Indices: 86277059--86277102 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86277049 TGTATAAACC
* *
86277059 AAATAAACTTTATTTCAGTAAA
1 AAATAAACTTAATATCAGTAAA
*
86277081 AAATAAACTTAATATCTGTAAA
1 AAATAAACTTAATATCAGTAAA
86277103 CTGAAATAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (22 bp):
AAATAAACTTAATATCAGTAAA
Found at i:86279762 original size:12 final size:12
Alignment explanation
Indices: 86279745--86279774 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
86279735 AAAGATAATG
86279745 GTATATATATAT
1 GTATATATATAT
86279757 GTATATATATAT
1 GTATATATATAT
86279769 GTATAT
1 GTATAT
86279775 TTATCCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (12 bp):
GTATATATATAT
Found at i:86287022 original size:26 final size:26
Alignment explanation
Indices: 86286974--86287026 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
86286964 TATTTTGATG
*
86286974 TTTTATACAACATTTTGTTTATATAT
1 TTTTATACAACATTTTGTATATATAT
86287000 TTTTATAC-ACATTTATGTATATATAT
1 TTTTATACAACATTT-TGTATATATAT
86287026 T
1 T
86287027 AATTTAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTATACAACATTTTGTATATATAT
Found at i:86300038 original size:137 final size:137
Alignment explanation
Indices: 86299893--86300642 Score: 1180
Period size: 137 Copynumber: 5.5 Consensus size: 137
86299883 CAGATCTCCT
*
86299893 TGAAGTTTCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
1 TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
* * * *
86299958 AGATAGCAAATTTTATTTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCTATAAACCACAAATCTC
66 AGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTC
86300023 ATCTC-C
131 ATCTCTC
* * * *
86300029 TTGAAGTTTCAGTGGAGTAGATCAACACAAGTCTTATCTCTCTGAAGTTGCAATGGAGCAGACTA
1 -TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTA
* * *
86300094 AAGAAAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAACCACAGATAT
65 AAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCT
86300159 CATCTCTC
130 CATCTCTC
*
86300167 TGAAGTTGCAATAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
1 TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
*
86300232 AGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTC
66 AGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTC
86300297 ATCTCTC
131 ATCTCTC
* * * *
86300304 TGAAGTTACAGTAGGGTAGATCAACACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAA
1 TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
*
86300369 AGATAGCAAATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTC
66 AGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTC
*
86300434 ATCTCTA
131 ATCTCTC
* * *
86300441 TGATGTTGCAGTAGAGTATATCACCACAAGTCTTATCTC-CTTGAAGTTGCAGTGGAGCAGACTA
1 TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCAC-TGAAGTTGCAGTGGAGCAGACTA
* * * *
86300505 AAGGTCGCAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAACCATAGATCT
65 AAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCT
86300570 CATCTCTC
130 CATCTCTC
* * * * *
86300578 TAAAGTTGCAGTAGAGTAGATCAACACAGGTCATATCTCCCTGAAGTTGCAGTGAAGCAGACTAA
1 TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
86300643 TGATGCAGTA
Statistics
Matches: 566, Mismatches: 44, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
136 1 0.00
137 563 0.99
138 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (137 bp):
TGAAGTTGCAGTAGAGTAGATCAACACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAA
AGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTC
ATCTCTC
Found at i:86300119 original size:45 final size:45
Alignment explanation
Indices: 86299923--86300546 Score: 247
Period size: 45 Copynumber: 13.7 Consensus size: 45
86299913 TCAACACAAG
* *
86299923 TCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* * * * * *
86299968 TTTTATTTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCTATAAACCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---AGAAA--GCAAA
* * * * * * *
86300019 TCTCATCTCCTTGAAGTTTCAGTGGAGTAGA-T-CA-ACA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* *
86300060 TCTTATCTCTCTGAAGTTGCAATGGAGCAGACTAAAGAAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* * * * * *
86300105 TCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---AGAAAGCA-A-A
* * * * * * * * *
86300156 TATCATCTCTCTGAAGTTGCAATAGAGTAGA-T-CA-ACA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* *
86300197 TCTTATCTCACTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* * * * * *
86300242 TCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---AGAAAGCA-A-A
* * * * * * *
86300293 TCTCATCTCTCTGAAGTTACAGTAGG-GTAGA-T-CA-ACA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGACTAAAGAAAGCAAA
* *
86300334 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* * * * * *
86300379 TCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---AGAAAGCA-A-A
* ** * * * * * ** *
86300430 TCTCATCTCTATGATGTTGCAGTAGAGTATA-T-CA-CCA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* ***
86300471 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGGTCGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* * *
86300516 TCTTATTTCCCTGAAGTTGTAGTGGAACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
86300547 TTGAAGCTAT
Statistics
Matches: 418, Mismatches: 119, Indels: 84
0.67 0.19 0.14
Matches are distributed among these distances:
40 2 0.00
41 100 0.24
42 7 0.02
43 10 0.02
44 13 0.03
45 154 0.37
46 8 0.02
49 19 0.05
50 7 0.02
51 96 0.23
52 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
Found at i:86300681 original size:62 final size:62
Alignment explanation
Indices: 86300584--86300704 Score: 179
Period size: 62 Copynumber: 2.0 Consensus size: 62
86300574 TCTCTAAAGT
* *** *
86300584 TGCAGTAGAGTAGATCAACACAGGTCATATCTCCCTGAAGTTGCAGTGAAGCAGACTAATGA
1 TGCAGTAGAGCAGATCAACACAAACCATATCTCCCTGAAGTCGCAGTGAAGCAGACTAATGA
* *
86300646 TGCAGTAGAGCAGATCAACACAAACCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTAA
1 TGCAGTAGAGCAGATCAACACAAACCATATCTCCCTGAAGTCGCAGTGAAGCAGACTAA
86300705 AGATAGCAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 52 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (62 bp):
TGCAGTAGAGCAGATCAACACAAACCATATCTCCCTGAAGTCGCAGTGAAGCAGACTAATGA
Found at i:86300824 original size:199 final size:199
Alignment explanation
Indices: 86300447--86300828 Score: 539
Period size: 199 Copynumber: 1.9 Consensus size: 199
86300437 TCTATGATGT
* * * ** * * * *
86300447 TGCAGTAGAGTATATCACCACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGGTCG
1 TGCAGTAGAGCAGATCAACACAAACCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTAAAGATAG
* * * *
86300512 CAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAACCATAGATCTCATCTCT
66 CAAATCTTATCTCCATGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCT
* * ***
86300577 CTAAAGTTGCAGTAGAGTAGATCAACACAGGTCATATCTCCCTGAAGTTGCAGTGAAGCAGACTA
131 CTAAAGTTGCAGTAGAGCAGATCAAAACAAAACATATCTCCCTGAAGTTGCAGTGAAGCAGACTA
86300642 ATGA
196 ATGA
86300646 TGCAGTAGAGCAGATCAACACAAACCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTAAAGATAG
1 TGCAGTAGAGCAGATCAACACAAACCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTAAAGATAG
* *
86300711 CAAATCTTATCTCCATGAAGTTGCATTGGAACAGATTGAAGCTATAAATCACAGATCTCATCTCT
66 CAAATCTTATCTCCATGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCT
* * * * *
86300776 CTGAAGTTGTAGTAGAGCAGATCAAAACAAAACCTATCTTCTTGAAGTTGCAG
131 CTAAAGTTGCAGTAGAGCAGATCAAAACAAAACATATCTCCCTGAAGTTGCAG
86300829 AGGAGCGATA
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
199 158 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (199 bp):
TGCAGTAGAGCAGATCAACACAAACCTTATCTCCCTGAAGTCGCAGTGGAGCAGACTAAAGATAG
CAAATCTTATCTCCATGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCT
CTAAAGTTGCAGTAGAGCAGATCAAAACAAAACATATCTCCCTGAAGTTGCAGTGAAGCAGACTA
ATGA
Found at i:86302518 original size:26 final size:26
Alignment explanation
Indices: 86302470--86302522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
86302460 TATTTTGATG
*
86302470 TTTTATACAACATTTTGTTTATATAT
1 TTTTATACAACATTTTGTATATATAT
86302496 TTTTATAC-ACATTTATGTATATATAT
1 TTTTATACAACATTT-TGTATATATAT
86302522 T
1 T
86302523 AATTTAGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTATACAACATTTTGTATATATAT
Found at i:86304731 original size:12 final size:12
Alignment explanation
Indices: 86304700--86304724 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86304690 TTGTGTGTTC
86304700 TTTATTTTATTT
1 TTTATTTTATTT
86304712 TTTATTTTATTT
1 TTTATTTTATTT
86304724 T
1 T
86304725 ATTTTTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:86310534 original size:24 final size:25
Alignment explanation
Indices: 86310499--86310549 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
86310489 GGTTGTACCT
*
86310499 AAAATATGAATATATA-TTTTTTCA
1 AAAATATAAATATATATTTTTTTCA
86310523 AAAATATAAATATATATTTTTTTCA
1 AAAATATAAATATATATTTTTTTCA
86310548 AA
1 AA
86310550 CTTTTTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (25 bp):
AAAATATAAATATATATTTTTTTCA
Found at i:86310856 original size:19 final size:19
Alignment explanation
Indices: 86310828--86310864 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86310818 ATTCAATAAC
86310828 CTATAACTATATATAAATA
1 CTATAACTATATATAAATA
* *
86310847 CTATATCTATCTATAAAT
1 CTATAACTATATATAAAT
86310865 GCAGGGCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.41
Consensus pattern (19 bp):
CTATAACTATATATAAATA
Found at i:86312663 original size:28 final size:28
Alignment explanation
Indices: 86312621--86312687 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
86312611 TGTGTCCCTA
* *
86312621 GCCCGCGTTCTTCACACGGCCTTGACAC
1 GCCCGTGTCCTTCACACGGCCTTGACAC
* *
86312649 GTCCGTGTCCTTCACACGGCCTTGACAT
1 GCCCGTGTCCTTCACACGGCCTTGACAC
86312677 GCCCGTGTCCT
1 GCCCGTGTCCT
86312688 AGCCCTTGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.12, C:0.40, G:0.22, T:0.25
Consensus pattern (28 bp):
GCCCGTGTCCTTCACACGGCCTTGACAC
Found at i:86313777 original size:46 final size:43
Alignment explanation
Indices: 86313678--86313846 Score: 133
Period size: 46 Copynumber: 3.7 Consensus size: 43
86313668 TCAACTTGTA
* * * * *
86313678 GCCGATGCATGTCCCAGACATGTCTTACACTGGCGTACATCTTGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCCT-C-TC-TAAT
**
86313724 GTTGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CCTC-TCT-AAT
*
86313770 GCCGATGCCATGTCCCAAACATGGTCTTAGACTAG-CTCTCATAATGT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCCTCTC-TAA--T
* *
86313817 GGCCGATGCATGTCCCAGACATGCCTTACA
1 -GCCGATGCATGTCCCAAACATGTCTTACA
86313847 TTAACTCACA
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
45 5 0.05
46 48 0.48
47 30 0.30
48 18 0.18
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (43 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCCTCTCTAAT
Found at i:86315155 original size:31 final size:31
Alignment explanation
Indices: 86315117--86315185 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 31
86315107 AATAGCGGTG
86315117 TTTTAGATAGTATG-AAAAATCAATAAGGG-TA
1 TTTTAGATAGTA-GCAAAAATCAAT-AGGGATA
86315148 TTTTAGATAGTAGCAAAAATCAATAGGGATA
1 TTTTAGATAGTAGCAAAAATCAATAGGGATA
*
86315179 ATTTAGA
1 TTTTAGA
86315186 CATCATAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
30 5 0.14
31 30 0.86
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (31 bp):
TTTTAGATAGTAGCAAAAATCAATAGGGATA
Found at i:86323950 original size:42 final size:43
Alignment explanation
Indices: 86323902--86324006 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 43
86323892 TGAGATTTAT
* *
86323902 GTGTAAGACCATGTCTGGGAGACCGACATC-ATATATGATTTC
1 GTGTAAGACCATGTCTGGGACACCGACATCGATATATGATTAC
* * ** * *
86323944 GTGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACACCGACATCGATATATGATTAC
*
86323987 ATGTAAGACCATGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
86324007 TGTTGGCATT
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 24 0.47
43 27 0.53
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACACCGACATCGATATATGATTAC
Found at i:86324585 original size:24 final size:23
Alignment explanation
Indices: 86324556--86324613 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 23
86324546 AGAATATGAT
86324556 TGAGACTATGGGATTTGTCTTGG
1 TGAGACTATGGGATTTGTCTTGG
86324579 TAGAGACTATGGGATTTGTCTTGG
1 T-GAGACTATGGGATTTGTCTTGG
86324603 TGTAGACTATG
1 TG-AGACTATG
86324614 TGATGGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.21, C:0.09, G:0.33, T:0.38
Consensus pattern (23 bp):
TGAGACTATGGGATTTGTCTTGG
Found at i:86326847 original size:13 final size:13
Alignment explanation
Indices: 86326829--86326866 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
86326819 AAGTAATCAC
86326829 ACACGGGCGTGTT
1 ACACGGGCGTGTT
86326842 ACACGGGCGTGTT
1 ACACGGGCGTGTT
86326855 ACACGGGCGTGT
1 ACACGGGCGTGT
86326867 CCCTGCCGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.39, T:0.21
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:86336079 original size:16 final size:17
Alignment explanation
Indices: 86336047--86336084 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
86336037 CCTTCATTAA
86336047 GTTTTTAAGACTCATTT
1 GTTTTTAAGACTCATTT
* *
86336064 -TTTTTAAGATTTATTT
1 GTTTTTAAGACTCATTT
86336080 GTTTT
1 GTTTT
86336085 CCTTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (17 bp):
GTTTTTAAGACTCATTT
Found at i:86342958 original size:26 final size:26
Alignment explanation
Indices: 86342935--86342987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
86342925 CTTATTTTCT
*
86342935 TCCTCATTTTTATCTATAACTTTTAA
1 TCCTCATTTTTATCAATAACTTTTAA
86342961 TCCTCATTTTTATCAATAACTTTTAA
1 TCCTCATTTTTATCAATAACTTTTAA
86342987 T
1 T
86342988 TTTCTTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.00, T:0.53
Consensus pattern (26 bp):
TCCTCATTTTTATCAATAACTTTTAA
Found at i:86347066 original size:24 final size:24
Alignment explanation
Indices: 86347039--86347140 Score: 125
Period size: 24 Copynumber: 4.2 Consensus size: 24
86347029 CCATTAAGGT
* *
86347039 GTATTCTGTAAGTTCCTTTGTGAC
1 GTATTCTATAAGTGCCTTTGTGAC
* * *
86347063 GTATTCTATAAGTACCTTTCTGGC
1 GTATTCTATAAGTGCCTTTGTGAC
*
86347087 GTATTCTATAAGTGCCTTTGTGGC
1 GTATTCTATAAGTGCCTTTGTGAC
*
86347111 GTATTCTGTAAGTGCCTTTGT-AGC
1 GTATTCTATAAGTGCCTTTGTGA-C
86347135 GTATTC
1 GTATTC
86347141 GGGAATGCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (24 bp):
GTATTCTATAAGTGCCTTTGTGAC
Found at i:86347091 original size:48 final size:48
Alignment explanation
Indices: 86347039--86347140 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
86347029 CCATTAAGGT
* * *
86347039 GTATTCTGTAAGTTCCTTTGTGACGTATTCTATAAGTACCTTTCTGGC
1 GTATTCTATAAGTGCCTTTGTGACGTATTCTATAAGTACCTTTCTAGC
* * * *
86347087 GTATTCTATAAGTGCCTTTGTGGCGTATTCTGTAAGTGCCTTTGTAGC
1 GTATTCTATAAGTGCCTTTGTGACGTATTCTATAAGTACCTTTCTAGC
86347135 GTATTC
1 GTATTC
86347141 GGGAATGCCT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (48 bp):
GTATTCTATAAGTGCCTTTGTGACGTATTCTATAAGTACCTTTCTAGC
Found at i:86348389 original size:16 final size:16
Alignment explanation
Indices: 86348368--86348401 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
86348358 AGAAATAGAA
86348368 GGCATGAAAAGAGGAG
1 GGCATGAAAAGAGGAG
86348384 GGCATGAAAAGAGGAG
1 GGCATGAAAAGAGGAG
86348400 GG
1 GG
86348402 GCTGGACCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.47, T:0.06
Consensus pattern (16 bp):
GGCATGAAAAGAGGAG
Found at i:86353271 original size:22 final size:22
Alignment explanation
Indices: 86353245--86353289 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86353235 ATTATGTGTA
86353245 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
86353267 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
86353289 T
1 T
86353290 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:86375394 original size:22 final size:23
Alignment explanation
Indices: 86375325--86375405 Score: 103
Period size: 23 Copynumber: 3.6 Consensus size: 23
86375315 TAGCTCATAT
86375325 GAGCTTACCGTTTCATCTCTTCAG
1 GAGCTTACCGTTTCATCTCTTC-G
* * *
86375349 G-GCTTACTGTTTTATCTCTACG
1 GAGCTTACCGTTTCATCTCTTCG
*
86375371 GAGCTTACCG-TTCAGCTCTTCG
1 GAGCTTACCGTTTCATCTCTTCG
86375393 GAGCTTACCGTTT
1 GAGCTTACCGTTT
86375406 ATCAGCTCAG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 21 0.44
23 26 0.54
24 1 0.02
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (23 bp):
GAGCTTACCGTTTCATCTCTTCG
Found at i:86375594 original size:9 final size:9
Alignment explanation
Indices: 86375582--86375636 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
86375572 TAATAGCTAT
86375582 ATGAATTAC
1 ATGAATTAC
86375591 ATGAATT--
1 ATGAATTAC
86375598 AT-AAGTTAC
1 ATGAA-TTAC
*
86375607 ATGATTTAC
1 ATGAATTAC
*
86375616 ATGAATTAT
1 ATGAATTAC
*
86375625 ATGACTTAC
1 ATGAATTAC
86375634 ATG
1 ATG
86375637 GATAATATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (9 bp):
ATGAATTAC
Found at i:86375633 original size:18 final size:18
Alignment explanation
Indices: 86375607--86375646 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
86375597 TATAAGTTAC
* *
86375607 ATGATTTACATGAATTAT
1 ATGACTTACATGAATAAT
*
86375625 ATGACTTACATGGATAAT
1 ATGACTTACATGAATAAT
86375643 ATGA
1 ATGA
86375647 TACATGAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (18 bp):
ATGACTTACATGAATAAT
Found at i:86382890 original size:18 final size:18
Alignment explanation
Indices: 86382867--86382910 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
86382857 ATATAATAGC
86382867 TATATGATTTACATGAAT
1 TATATGATTTACATGAAT
* *
86382885 TATATGAATTACATGGAT
1 TATATGATTTACATGAAT
*
86382903 AATATGAT
1 TATATGAT
86382911 ACATGAGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (18 bp):
TATATGATTTACATGAAT
Found at i:86387531 original size:187 final size:187
Alignment explanation
Indices: 86387216--86387584 Score: 720
Period size: 187 Copynumber: 2.0 Consensus size: 187
86387206 GCTCTCTGAA
**
86387216 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAAACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAAACCAT
86387281 AGTTGAAAGATACTATGGCATCATGTCGAAGATAAATAAGATCATGGAAAAGAGACGCCAAGATA
66 AGTTGAAAGATACTATGGCATCATGTCGAAGATAAATAAGATCATGGAAAAGAGACGCCAAGATA
86387346 TCTGTTGAACAACTAATATTCAGGTAATATGTACCAGATGACAAATGGTTATGTGAC
131 TCTGTTGAACAACTAATATTCAGGTAATATGTACCAGATGACAAATGGTTATGTGAC
86387403 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAAACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAAACCAT
86387468 AGTTGAAAGATACTATGGCATCATGTCGAAGATAAATAAGATCATGGAAAAGAGACGCCAAGATA
66 AGTTGAAAGATACTATGGCATCATGTCGAAGATAAATAAGATCATGGAAAAGAGACGCCAAGATA
86387533 TCTGTTGAACAACTAATATTCAGGTAATATGTACCAGATGACAAATGGTTAT
131 TCTGTTGAACAACTAATATTCAGGTAATATGTACCAGATGACAAATGGTTAT
86387585 ATGAATTGGT
Statistics
Matches: 180, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
187 180 1.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.23
Consensus pattern (187 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAAACCAT
AGTTGAAAGATACTATGGCATCATGTCGAAGATAAATAAGATCATGGAAAAGAGACGCCAAGATA
TCTGTTGAACAACTAATATTCAGGTAATATGTACCAGATGACAAATGGTTATGTGAC
Found at i:86392804 original size:49 final size:48
Alignment explanation
Indices: 86392727--86392914 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 48
86392717 TAGCCGAAAC
*
86392727 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * *
86392775 TAATCTGGTACACGTAGTAGCCTGTACTTAGTACTACACGTGTGATCACAA
1 T-ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
* * *
86392826 TTTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
86392875 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 -TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
86392915 CGTGACCTCA
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 73 0.62
50 6 0.05
51 38 0.32
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:86392848 original size:100 final size:100
Alignment explanation
Indices: 86392732--86392913 Score: 337
Period size: 100 Copynumber: 1.8 Consensus size: 100
86392722 GAAACTATCT
*
86392732 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
86392797 TGTACTTAGTACTACACGTGTGATCACAATTTTTG
66 TGCACTTAGTACTACACGTGTGATCACAATTTTTG
*
86392832 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
86392897 TGCACTTAGTACTACAC
66 TGCACTTAGTACTACAC
86392914 ACGTGACCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACGTGTGATCACAATTTTTG
Found at i:86396465 original size:11 final size:10
Alignment explanation
Indices: 86396445--86396469 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86396435 TGTGGTTTAT
86396445 AAAAATAAAA
1 AAAAATAAAA
86396455 AAAAATAAAA
1 AAAAATAAAA
86396465 AAAAA
1 AAAAA
86396470 CAACACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:86397077 original size:26 final size:24
Alignment explanation
Indices: 86397032--86397083 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
86397022 TATTTATTTT
*
86397032 ATTTTAAATATTAATAATTATAAAA
1 ATTTTAAATATAAATAATTA-AAAA
86397057 ATTTTAAAATATCAAAT-ATTAAAAA
1 ATTTT-AAATAT-AAATAATTAAAAA
86397082 AT
1 AT
86397084 AAAGAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 11 0.46
26 10 0.42
27 3 0.12
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTTAAATATAAATAATTAAAAA
Found at i:86404370 original size:18 final size:18
Alignment explanation
Indices: 86404347--86404392 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
86404337 GAGTTAAACG
*
86404347 AATCGAATTATTCGAGTT
1 AATCGAATTATTCGAGTC
*
86404365 AATCGAGTTATTCGAGTC
1 AATCGAATTATTCGAGTC
86404383 AACTCGAATT
1 AA-TCGAATT
86404393 TTTTTTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (18 bp):
AATCGAATTATTCGAGTC
Found at i:86404718 original size:30 final size:29
Alignment explanation
Indices: 86404669--86404725 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
86404659 AACTTTTTAT
* *
86404669 TTTCTCCCTAAAATTTTACTCCCTTCCAC
1 TTTCCCCCCAAAATTTTACTCCCTTCCAC
*
86404698 TTTCCCCCCAAAACTTTTACTTCCTTCC
1 TTTCCCCCCAAAA-TTTTACTCCCTTCC
86404726 CATCCCACGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.19, C:0.40, G:0.00, T:0.40
Consensus pattern (29 bp):
TTTCCCCCCAAAATTTTACTCCCTTCCAC
Found at i:86415418 original size:255 final size:255
Alignment explanation
Indices: 86414967--86415479 Score: 1017
Period size: 255 Copynumber: 2.0 Consensus size: 255
86414957 AATAAAATAA
86414967 TAGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAATGTGTAGTTGAT
1 TAGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAATGTGTAGTTGAT
86415032 TCTTTTCCCCCCCATTGCCGTGAGCTAAAGAAAAGAGAGGAGAAGATCTTTGTTCATCCTTTTCT
66 TCTTTTCCCCCCCATTGCCGTGAGCTAAAGAAAAGAGAGGAGAAGATCTTTGTTCATCCTTTTCT
86415097 CACCTTCATTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAATTTTCTCATCCTTTGGTTCATC
131 CACCTTCATTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAATTTTCTCATCCTTTGGTTCATC
86415162 CTTGGCCAAAAATTTTAAGGAGGAAAGAACAAGAAAGGTGAAGAGATTCGGCCATGCATG
196 CTTGGCCAAAAATTTTAAGGAGGAAAGAACAAGAAAGGTGAAGAGATTCGGCCATGCATG
86415222 TAGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAATGTGTAGTTGAT
1 TAGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAATGTGTAGTTGAT
86415287 TCTTTTCCCCCCCATTGCCGTGAGCTAAAGAAAAGAGAGGAGAAGATCTTTGTTCATCCTTTTCT
66 TCTTTTCCCCCCCATTGCCGTGAGCTAAAGAAAAGAGAGGAGAAGATCTTTGTTCATCCTTTTCT
86415352 CACCTTCATTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAATTTTCTCATCCTTTGGTTCATC
131 CACCTTCATTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAATTTTCTCATCCTTTGGTTCATC
*
86415417 CTTGGCCAAAAATTTTAAGGAGGAAAGAAGAAGAAAGGTGAAGAGATTCGGCCATGCATG
196 CTTGGCCAAAAATTTTAAGGAGGAAAGAACAAGAAAGGTGAAGAGATTCGGCCATGCATG
86415477 TAG
1 TAG
86415480 CTAGGCTAAG
Statistics
Matches: 257, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
255 257 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (255 bp):
TAGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAATGTGTAGTTGAT
TCTTTTCCCCCCCATTGCCGTGAGCTAAAGAAAAGAGAGGAGAAGATCTTTGTTCATCCTTTTCT
CACCTTCATTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAATTTTCTCATCCTTTGGTTCATC
CTTGGCCAAAAATTTTAAGGAGGAAAGAACAAGAAAGGTGAAGAGATTCGGCCATGCATG
Found at i:86416593 original size:39 final size:39
Alignment explanation
Indices: 86416436--86416605 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
86416426 GGACTAAGAT
* * *
86416436 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
86416476 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
86416516 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * * *
86416556 CCGAAGGCATTGTGTGAGTTACTAAAACCAGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
86416595 CCGAAGGCATT
1 CCGAAGGCATT
86416606 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 37 0.32
40 75 0.65
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:86419295 original size:103 final size:103
Alignment explanation
Indices: 86419184--86419390 Score: 405
Period size: 103 Copynumber: 2.0 Consensus size: 103
86419174 TTTTTGAGGG
*
86419184 ACTAAAATGTGAAATAAATGCAATGTGTGGACTTGTATGAGAACCATGAATATTTGGCCCTTGTG
1 ACTAAAATGTGAAATAAATGCAATGTGTGGACTTGTATGAGAACCATGAATATTCGGCCCTTGTG
86419249 TGTTATGGGCAAATTTTGTGTATTTTGTGTTTTGTGCA
66 TGTTATGGGCAAATTTTGTGTATTTTGTGTTTTGTGCA
86419287 ACTAAAATGTGAAATAAATGCAATGTGTGGACTTGTATGAGAACCATGAATATTCGGCCCTTGTG
1 ACTAAAATGTGAAATAAATGCAATGTGTGGACTTGTATGAGAACCATGAATATTCGGCCCTTGTG
86419352 TGTTATGGGCAAATTTTGTGTATTTTGTGTTTTGTGCA
66 TGTTATGGGCAAATTTTGTGTATTTTGTGTTTTGTGCA
86419390 A
1 A
86419391 AAAGGACTAA
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (103 bp):
ACTAAAATGTGAAATAAATGCAATGTGTGGACTTGTATGAGAACCATGAATATTCGGCCCTTGTG
TGTTATGGGCAAATTTTGTGTATTTTGTGTTTTGTGCA
Found at i:86420434 original size:41 final size:41
Alignment explanation
Indices: 86420186--86420423 Score: 399
Period size: 41 Copynumber: 5.8 Consensus size: 41
86420176 TTTATCGTTA
* * * *
86420186 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86420227 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86420268 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86420309 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86420350 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
86420391 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
86420424 AAGAGCCGGT
Statistics
Matches: 189, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 184 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:86420694 original size:33 final size:32
Alignment explanation
Indices: 86420638--86420701 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
86420628 ATAGATATGT
86420638 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
86420670 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
86420702 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:86420718 original size:33 final size:33
Alignment explanation
Indices: 86420645--86420718 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
86420635 TGTATATATA
* * **
86420645 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
86420677 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
86420710 TGTATGTAT
1 TATATGTAT
86420719 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:86427715 original size:2 final size:2
Alignment explanation
Indices: 86427708--86427732 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86427698 TGTGTTAAGT
86427708 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
86427733 TCGGATGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86428455 original size:41 final size:41
Alignment explanation
Indices: 86427920--86428444 Score: 957
Period size: 41 Copynumber: 12.8 Consensus size: 41
86427910 TTTATCGTTA
* * * *
86427920 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86427961 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428002 GTGACAC-TATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACAT-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428043 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428084 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428125 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428166 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428207 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428248 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428289 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428330 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
86428371 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
86428412 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
86428445 AAGAGCCGGT
Statistics
Matches: 475, Mismatches: 4, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 471 0.99
42 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:86428715 original size:33 final size:32
Alignment explanation
Indices: 86428659--86428722 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
86428649 ATAGATATGT
86428659 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
86428691 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
86428723 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:86428739 original size:33 final size:33
Alignment explanation
Indices: 86428666--86428739 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
86428656 TGTATATATA
* * **
86428666 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
86428698 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
86428731 TGTATGTAT
1 TATATGTAT
86428740 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:86435985 original size:41 final size:42
Alignment explanation
Indices: 86435922--86436033 Score: 149
Period size: 41 Copynumber: 2.7 Consensus size: 42
86435912 ATCGTTAGTG
* *
86435922 ACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGA-
1 ACAT-ATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
86435964 A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
1 ACA-TATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
* *
86436006 ACAT-TTCGGACTATAAGTCTAGTAGGCT
1 ACATATTCAGACTATAAGTCTAGCAGGCT
86436034 AAGAGCCGGT
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
41 58 0.92
42 4 0.06
43 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (42 bp):
ACATATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAC
Found at i:86436304 original size:33 final size:32
Alignment explanation
Indices: 86436248--86436311 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
86436238 ATAGATATGT
86436248 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
86436280 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
86436312 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:86436328 original size:33 final size:33
Alignment explanation
Indices: 86436255--86436328 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
86436245 TGTATATATA
* * **
86436255 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
86436287 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
86436320 TGTATGTAT
1 TATATGTAT
86436329 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:86437149 original size:40 final size:40
Alignment explanation
Indices: 86437079--86437276 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
86437069 GGGTGTTACA
* *
86437079 GCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAG
* *
86437119 GCATTTGTGCGAGTTACTATATCCGAGCTAAGTCTCGAAG
1 GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
* *
86437159 GCATTTGTGCTAGTTACTATATCCGGGCTAGGTCCCGAAG
1 GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
* *
86437199 GCATTTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
* * *
86437239 ACATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAA
1 GCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAA
86437277 TGTACTTGGT
Statistics
Matches: 139, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 15 0.11
40 123 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
Found at i:86440486 original size:20 final size:21
Alignment explanation
Indices: 86440455--86440516 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
86440445 TGAATGCACA
*
86440455 CACGTGCCCCTGTTTGTACTT
1 CACGTACCCCTGTTTGTACTT
* *
86440476 CA-GTACCCCTGATTGTACAT
1 CACGTACCCCTGTTTGTACTT
* *
86440496 -ACGTGCCCCTGTTTATACTT
1 CACGTACCCCTGTTTGTACTT
86440516 C
1 C
86440517 GATAATTTCA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 1 0.03
20 29 0.91
21 2 0.06
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (21 bp):
CACGTACCCCTGTTTGTACTT
Found at i:86443620 original size:21 final size:21
Alignment explanation
Indices: 86443596--86443639 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
86443586 GAAAAATTAT
*
86443596 TAAAATATTTCTATT-TAAAAA
1 TAAAATATAT-TATTATAAAAA
*
86443617 TAAATTATATTATTATAAAAA
1 TAAAATATATTATTATAAAAA
86443638 TA
1 TA
86443640 TGTTTTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATATATTATTATAAAAA
Found at i:86452666 original size:6 final size:6
Alignment explanation
Indices: 86452657--86453452 Score: 1592
Period size: 6 Copynumber: 132.7 Consensus size: 6
86452647 ATGGAGATGG
86452657 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452705 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452753 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452801 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452849 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452897 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452945 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86452993 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453041 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453089 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453137 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453185 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453233 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453281 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453329 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453377 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
86453425 AGGTCA AGGTCA AGGTCA AGGTCA AGGT
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGT
86453453 GGGACATAGA
Statistics
Matches: 790, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 790 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (6 bp):
AGGTCA
Found at i:86456243 original size:15 final size:15
Alignment explanation
Indices: 86456223--86456290 Score: 82
Period size: 16 Copynumber: 4.4 Consensus size: 15
86456213 TAAATAATTA
86456223 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
86456238 ATTTAATATCAACAAT
1 ATTTAACATTAA-AAT
86456254 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
86456269 ATTTAATATAAAAAAT
1 ATTTAACAT-TAAAAT
86456285 ATTTAA
1 ATTTAA
86456291 TAACATAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
15 21 0.47
16 24 0.53
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTAACATTAAAAT
Found at i:86456256 original size:16 final size:16
Alignment explanation
Indices: 86456233--86456306 Score: 87
Period size: 16 Copynumber: 4.6 Consensus size: 16
86456223 ATTTAACATT
86456233 AAAATATTTAATATCA
1 AAAATATTTAATATCA
* * *
86456249 ACAATATTTAACAT-T
1 AAAATATTTAATATCA
*
86456264 AAAATATTTAATATAA
1 AAAATATTTAATATCA
*
86456280 AAAATATTTAATAACA
1 AAAATATTTAATATCA
86456296 TAAAATATTTA
1 -AAAATATTTA
86456307 TAAAATTATA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
15 12 0.25
16 26 0.54
17 10 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATATTTAATATCA
Found at i:86456258 original size:31 final size:31
Alignment explanation
Indices: 86456223--86456290 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
86456213 TAAATAATTA
* *
86456223 ATTTAACATTAAAATATTTAATATCAACAAT
1 ATTTAACATTAAAATATTTAATATAAAAAAT
86456254 ATTTAACATTAAAATATTTAATATAAAAAAT
1 ATTTAACATTAAAATATTTAATATAAAAAAT
86456285 ATTTAA
1 ATTTAA
86456291 TAACATAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (31 bp):
ATTTAACATTAAAATATTTAATATAAAAAAT
Found at i:86456309 original size:16 final size:18
Alignment explanation
Indices: 86456226--86456323 Score: 81
Period size: 16 Copynumber: 5.9 Consensus size: 18
86456216 ATAATTAATT
86456226 TAACATTAAAATATTTAA
1 TAACATTAAAATATTTAA
* *
86456244 TATCA--ACAATA-TT--
1 TAACATTAAAATATTTAA
86456257 TAACATTAAAATATTTAA
1 TAACATTAAAATATTTAA
86456275 TATA-A--AAAATATTTAA
1 TA-ACATTAAAATATTTAA
86456291 TAACA-TAAAATATTT-A
1 TAACATTAAAATATTTAA
*
86456307 TAAAATTATAAATATTT
1 TAACATTA-AAATATTT
86456324 TTATAGAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
13 4 0.06
15 8 0.12
16 26 0.40
17 11 0.17
18 15 0.23
19 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
TAACATTAAAATATTTAA
Found at i:86463806 original size:27 final size:26
Alignment explanation
Indices: 86463720--86463863 Score: 171
Period size: 27 Copynumber: 5.4 Consensus size: 26
86463710 GAAAACTAAT
86463720 AACTGCCTTTGTGGTGTACTCTGAAAG
1 AACTGCCTTTGT-GTGTACTCTGAAAG
*
86463747 AATTGCCTTTGTGTGTACTCTGAAAG
1 AACTGCCTTTGTGTGTACTCTGAAAG
* * * * *
86463773 AATTGCCTTGGTGACGTTCTCTGAAGG
1 AACTGCCTTTGTG-TGTACTCTGAAAG
* *
86463800 AACTGCCTTTGTGGTGTACTTTGAAAT
1 AACTGCCTTTGT-GTGTACTCTGAAAG
*
86463827 AATTGCCTTTGTGGTGTACTCTGAAAG
1 AACTGCCTTTGT-GTGTACTCTGAAAG
86463854 AACTGCCTTT
1 AACTGCCTTT
86463864 ATGGCAAAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 26 0.26
27 72 0.73
28 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (26 bp):
AACTGCCTTTGTGTGTACTCTGAAAG
Found at i:86463893 original size:80 final size:80
Alignment explanation
Indices: 86463720--86463924 Score: 211
Period size: 80 Copynumber: 2.5 Consensus size: 80
86463710 GAAAACTAAT
* * *
86463720 AACTGCCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAATTGCCTTGGT
1 AACTGCCTCTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAACTGCCTTGAT
*** *
86463785 GACGTTCTCTGAAGG
66 GAAAATCTCTAAAGG
* * * *
86463800 AACTGCCTTTGTGGTGTACTTTGAAATAATTGCCTTTGTGGTGTACTCTGAAAGAACTGCCTTTA
1 AACTGCCTCTGTGGTGTACTCTGAAAGAATTGCCTTTGT-GTGTACTCTGAAAGAACTGCCTTGA
86463865 TGGCAAAATCT-TAAAGG
65 T-G-AAAATCTCTAAAGG
* **
86463882 AA-TG-CTCTGTGGTGTGA-TCTAAAAGAGGTGCCTTTGTTGTGTA
1 AACTGCCTCTGTGGTGT-ACTCTGAAAGAATTGCCTTTG-TGTGTA
86463925 TTTTGGGGGA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
80 66 0.63
81 27 0.26
82 8 0.08
83 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (80 bp):
AACTGCCTCTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAACTGCCTTGAT
GAAAATCTCTAAAGG
Found at i:86472930 original size:79 final size:80
Alignment explanation
Indices: 86472839--86472992 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 80
86472829 AGCCCGGTTA
* * *
86472839 TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
86472902 GGG-CTTAGCTCTGAAT
64 GGGACTTAGCTCTGAAT
* ** * *
86472918 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
86472983 GACTTAGCTC
66 GACTTAGCTC
86472993 GGACATCATT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.05
79 45 0.70
80 16 0.25
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCTCTGAAT
Found at i:86472932 original size:39 final size:40
Alignment explanation
Indices: 86472811--86472942 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
86472801 GCTACTCGTT
* * *
86472811 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
* *
86472851 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * * *
86472891 CAAATGCCTTCGGG-CTTAGCTCTGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
86472930 CAAATGCCTTCGG
1 CAAATGCCTTCGG
86472943 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.40
40 47 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:86476544 original size:785 final size:786
Alignment explanation
Indices: 86475036--86476610 Score: 3107
Period size: 785 Copynumber: 2.0 Consensus size: 786
86475026 TTGATGTTCC
*
86475036 GCTTTCACTTGTTGACATATTAAACATCTCGAAACAAAGTCGGAGATGTCTCGTTTCATACCATG
1 GCTTTCACTTGTTGACATATTAAACATCTCGAAACAAAGTCGGAGATGTCCCGTTTCATACCATG
86475101 CCACCAAAACCAACGTTTCAAATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGC
66 CCACCAAAACCAACGTTTCAAATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGC
86475166 TACAATGGGCTTTGTTCAGAATCATCGAAATGAGTTTCGAATTCCTTGGAACGCACAAACGACTT
131 TACAATGGGCTTTGTTCAGAATCATCGAAATGAGTTTCGAATTCCTTGGAACGCACAAACGACTT
86475231 CTGAACCTCAAACAATCATCATCATCAATTTGAAACTCCGATTCCTTGTTCGGAACACACTCAGC
196 CTGAACCTCAAACAATCATCATCATCAATTTGAAACTCCGATTCCTTGTTCGGAACACACTCAGC
86475296 CCGTTTTGCAACCAATTCATCATCAACTTTCTGGGCTTCACGAATTTGATGAATCAATAATGGTT
261 CCGTTTTGCAACCAATTCATCATCAACTTTCTGGGCTTCACGAATTTGATGAATCAATAATGGTT
86475361 TGGCTTTTAATTCAGCTACTAACACATTGTCGGGTAGAACAGACAAGTGCACATTCATCGCTCGT
326 TGGCTTTTAATTCAGCTACTAACACATTGTCGGGTAGAACAGACAAGTGCACATTCATCGCTCGT
86475426 AAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCTGGGTGGTAATC
391 AAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCTGGGTGGTAATC
86475491 AATGACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTTAAGTCTCTCT
456 AATGACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTTAAGTCTCTCT
86475556 GAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACCTGGCACTTTTCACCAAATAAGCAA
521 GAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACCTGGCACTTTTCACCAAATAAGCAA
86475621 TGTCGCCATATTTTTAAAGCAAATACGATGACAGCTAGTTCAAGATCATGGGTCGGATAATTTTT
586 TGTCGCCATATTTTTAAAGCAAATACGATGACAGCTAGTTCAAGATCATGGGTCGGATAATTTTT
86475686 CTCATGTGGCTTTAATTGTCTCGACACATAGGCCACCACTCGACCTTCTTGCATCAATACGCAAC
651 CTCATGTGGCTTTAATTGTCTCGACACATAGGCCACCACTCGACCTTCTTGCATCAATACGCAAC
86475751 CCAATCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGCACTAAA
716 CCAATCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGCACTAAA
86475816 ATTGG-
781 ATTGGA
86475821 GCTTTCACTTGTTGACATATTAAACATCTCGAAACAAAGTCGGAGATGTCCCGTTTCATACCATG
1 GCTTTCACTTGTTGACATATTAAACATCTCGAAACAAAGTCGGAGATGTCCCGTTTCATACCATG
***
86475886 CCACCAAAATTGACGTTTCAAATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGC
66 CCACCAAAACCAACGTTTCAAATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGC
86475951 TACAATGGGCTTTGTTCAGAATCATCGAAATGAGTTTCGAATTCCTTGGAACGCACAAACGACTT
131 TACAATGGGCTTTGTTCAGAATCATCGAAATGAGTTTCGAATTCCTTGGAACGCACAAACGACTT
86476016 CTGAACCTCAAACAATCATCATCATCAATTTGAAACTCCGATTCCTTGTTCGGAACACACTCAGC
196 CTGAACCTCAAACAATCATCATCATCAATTTGAAACTCCGATTCCTTGTTCGGAACACACTCAGC
86476081 CCGTTTTGCAACCAATTCATCATCAACTTTCTGGGCTTCACGAATTTGATGAATCAATAATGGTT
261 CCGTTTTGCAACCAATTCATCATCAACTTTCTGGGCTTCACGAATTTGATGAATCAATAATGGTT
86476146 TGGCTTTTAATTCAGCTACTAACACATTGTCGGGTAGAACAGACAAGTGCACATTCATCGCTCGT
326 TGGCTTTTAATTCAGCTACTAACACATTGTCGGGTAGAACAGACAAGTGCACATTCATCGCTCGT
86476211 AAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCTGGGTGGTAATC
391 AAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCTGGGTGGTAATC
86476276 AATGACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTTAAGTCTCTCT
456 AATGACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTTAAGTCTCTCT
86476341 GAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACCTGGCACTTTTCACCAAATAAGCAA
521 GAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACCTGGCACTTTTCACCAAATAAGCAA
86476406 TGTCGCCATATTTTTAAAGCAAATACGATGACAGCTAGTTCAAGATCATGGGTCGGATAATTTTT
586 TGTCGCCATATTTTTAAAGCAAATACGATGACAGCTAGTTCAAGATCATGGGTCGGATAATTTTT
86476471 CTCATGTGGCTTTAATTGTCTCGACACATAGGCCACCACTCGACCTTCTTGCATCAATACGCAAC
651 CTCATGTGGCTTTAATTGTCTCGACACATAGGCCACCACTCGACCTTCTTGCATCAATACGCAAC
86476536 CCAATCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGCACTAAA
716 CCAATCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGCACTAAA
86476601 ATTGGA
781 ATTGGA
86476607 GCTT
1 GCTT
86476611 CAGTCAAATA
Statistics
Matches: 785, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
785 781 0.99
786 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (786 bp):
GCTTTCACTTGTTGACATATTAAACATCTCGAAACAAAGTCGGAGATGTCCCGTTTCATACCATG
CCACCAAAACCAACGTTTCAAATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGC
TACAATGGGCTTTGTTCAGAATCATCGAAATGAGTTTCGAATTCCTTGGAACGCACAAACGACTT
CTGAACCTCAAACAATCATCATCATCAATTTGAAACTCCGATTCCTTGTTCGGAACACACTCAGC
CCGTTTTGCAACCAATTCATCATCAACTTTCTGGGCTTCACGAATTTGATGAATCAATAATGGTT
TGGCTTTTAATTCAGCTACTAACACATTGTCGGGTAGAACAGACAAGTGCACATTCATCGCTCGT
AAAGCAAACAATGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCCTTTCCTGGGTGGTAATC
AATGACAAGCTCGTAATCTTTCAACAACTCAAGCCAACGTCTTTGTCGCAGATTTAAGTCTCTCT
GAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACCTGGCACTTTTCACCAAATAAGCAA
TGTCGCCATATTTTTAAAGCAAATACGATGACAGCTAGTTCAAGATCATGGGTCGGATAATTTTT
CTCATGTGGCTTTAATTGTCTCGACACATAGGCCACCACTCGACCTTCTTGCATCAATACGCAAC
CCAATCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGCACTAAA
ATTGGA
Found at i:86481864 original size:47 final size:47
Alignment explanation
Indices: 86481810--86481977 Score: 273
Period size: 47 Copynumber: 3.6 Consensus size: 47
86481800 TATTTGAATA
*
86481810 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
86481857 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * *
86481904 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
86481951 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
86481978 TCCCGAAGGG
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:86486711 original size:26 final size:26
Alignment explanation
Indices: 86486679--86486730 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
86486669 CATATTTGGC
86486679 CATAACA-AATATAAATTCTAACATTT
1 CATAACAGAATATAAATT-TAACATTT
**
86486705 CATAACAGCGTATAAATTTAACATTT
1 CATAACAGAATATAAATTTAACATTT
86486731 AATTACCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (26 bp):
CATAACAGAATATAAATTTAACATTT
Found at i:86487930 original size:28 final size:27
Alignment explanation
Indices: 86487887--86487993 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
86487877 GAATTTAGTG
86487887 TTAAT-TGGGCCTTAGCCCATATCAGTA
1 TTAATCTGGGCC-TAGCCCATATCAGTA
*
86487914 TTAATCTGGGCCATAGCCC-TATTACAATA
1 TTAATCTGGGCC-TAGCCCATA-T-CAGTA
*
86487943 TCAGAGCATACTGGGCCTAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCTAGCCCATATCAGTA
* *
86487975 TCAGTCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
86487994 TATTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
27 14 0.22
28 20 0.31
29 5 0.08
30 1 0.02
31 1 0.02
32 5 0.08
33 9 0.14
34 9 0.14
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAGTA
Found at i:86488065 original size:19 final size:20
Alignment explanation
Indices: 86488022--86488077 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
86488012 ATTGGGTCTT
86488022 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
86488042 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
86488061 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
86488078 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:86500523 original size:48 final size:48
Alignment explanation
Indices: 86500470--86500566 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
86500460 ATAGTGTGGG
86500470 CGACTTCAACTTCAATAATCCCGAGTCCAATAGCTGACGAACCAAAAT
1 CGACTTCAACTTCAATAATCCCGAGTCCAATAGCTGACGAACCAAAAT
*
86500518 CGACTTCAACTTCAATAATCCCGAGTCCGATAGCTGACGAACCAAAAT
1 CGACTTCAACTTCAATAATCCCGAGTCCAATAGCTGACGAACCAAAAT
86500566 C
1 C
86500567 TATAAAACAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.21
Consensus pattern (48 bp):
CGACTTCAACTTCAATAATCCCGAGTCCAATAGCTGACGAACCAAAAT
Found at i:86501001 original size:40 final size:40
Alignment explanation
Indices: 86500908--86501085 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
86500898 AAGCCAAGTA
* * *
86500908 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
86500946 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
86500986 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86501026 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
*
86501067 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86501086 TTATCATCCA
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 12 0.10
39 17 0.14
40 67 0.54
41 23 0.19
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86501269 original size:32 final size:32
Alignment explanation
Indices: 86501228--86501290 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
86501218 ATGGTTTAGT
86501228 TTGCTTTATGACACGACCTCTATGCACATACC
1 TTGCTTTATGACACGACCTCTATGCACATACC
*
86501260 TTGCTTTATGACACGATCTCTATGCACATAC
1 TTGCTTTATGACACGACCTCTATGCACATAC
86501291 GGCTACCCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (32 bp):
TTGCTTTATGACACGACCTCTATGCACATACC
Found at i:86505953 original size:49 final size:49
Alignment explanation
Indices: 86505881--86505979 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
86505871 GTTGGCAACC
86505881 CCTTTAAGTCCGTAGACTCAACTCAGATTATCTCGTTATTTGCGCACCT
1 CCTTTAAGTCCGTAGACTCAACTCAGATTATCTCGTTATTTGCGCACCT
86505930 CCTTTAAGTCCGTAGACTCAACTCAGATTATCTCGTTATTTGCGCACCT
1 CCTTTAAGTCCGTAGACTCAACTCAGATTATCTCGTTATTTGCGCACCT
86505979 C
1 C
86505980 AAATCAATAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.34
Consensus pattern (49 bp):
CCTTTAAGTCCGTAGACTCAACTCAGATTATCTCGTTATTTGCGCACCT
Found at i:86509175 original size:40 final size:40
Alignment explanation
Indices: 86509082--86509263 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
86509072 AAGCCAAGTA
* * *
86509082 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
86509120 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86509160 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
86509200 CCTTC-GGATCTTAGTCCGGATATAATCACTTAGCACAAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
86509241 CCTTCGGGACTTAGCCTGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
86509264 CATTTGAATA
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 12 0.10
39 20 0.16
40 62 0.50
41 26 0.21
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86515812 original size:43 final size:43
Alignment explanation
Indices: 86515709--86515816 Score: 164
Period size: 43 Copynumber: 2.5 Consensus size: 43
86515699 TAGCTCAACT
* *
86515709 ATGGTCTTATACGA-AATCAAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* *
86515752 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
86515795 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
86515817 CTCGTTAATC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:86521321 original size:21 final size:20
Alignment explanation
Indices: 86521297--86521335 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
86521287 GAGTATTTTG
86521297 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
86521318 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
86521336 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:86521345 original size:21 final size:21
Alignment explanation
Indices: 86521297--86521343 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
86521287 GAGTATTTTG
*
86521297 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
86521318 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
86521339 A-GTTT
1 ATGTTT
86521344 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:86522488 original size:20 final size:20
Alignment explanation
Indices: 86522463--86522501 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
86522453 GAGGCAATGC
86522463 ACACGCCTGTATGCATGGGG
1 ACACGCCTGTATGCATGGGG
*
86522483 ACACGCCTGTGTGCATGGG
1 ACACGCCTGTATGCATGGG
86522502 AACATGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.36, T:0.21
Consensus pattern (20 bp):
ACACGCCTGTATGCATGGGG
Found at i:86524910 original size:179 final size:179
Alignment explanation
Indices: 86524647--86525003 Score: 687
Period size: 179 Copynumber: 2.0 Consensus size: 179
86524637 TATTTTTTCT
*
86524647 AGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTTTCCCATGTTACAGGGATCGA
1 AGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGA
* *
86524712 CTGCACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAGGGCTTCAATACTGATGTCG
66 CTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAAGGCTTCAATACTGATGTCG
86524777 TTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTATGCACATATGGA
131 TTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTATGCACATATGGA
86524826 AGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGA
1 AGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGA
86524891 CTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAAGGCTTCAATACTGATGTCG
66 CTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAAGGCTTCAATACTGATGTCG
86524956 TTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTATGCACATATGG
131 TTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTATGCACATATGG
86525004 CATGACTTCT
Statistics
Matches: 175, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
179 175 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (179 bp):
AGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGA
CTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAAGGCTTCAATACTGATGTCG
TTTGTTTCTATAGAAACTAGACTCAAAGGGGAATCTATGCACATATGGA
Found at i:86532145 original size:29 final size:27
Alignment explanation
Indices: 86532127--86532196 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86532117 ATATTAAGTC
86532127 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
86532154 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
86532182 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
86532197 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:86532190 original size:28 final size:28
Alignment explanation
Indices: 86532127--86532224 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
86532117 ATATTAAGTC
*
86532127 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86532154 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86532182 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86532211 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86532225 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86533615 original size:57 final size:57
Alignment explanation
Indices: 86533527--86533640 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
86533517 AATCACAACG
86533527 CATACCTTTCCATTGAAATAGCCATGGCCGAATGCCTTGGTTTCCTTTGTTTCAATC
1 CATACCTTTCCATTGAAATAGCCATGGCCGAATGCCTTGGTTTCCTTTGTTTCAATC
*
86533584 CATACCTTTCCATTGAAATAGCCATGGCCGAATGCCTTGGTTTCCTTTTTTTCAATC
1 CATACCTTTCCATTGAAATAGCCATGGCCGAATGCCTTGGTTTCCTTTGTTTCAATC
86533641 TTTCCTTTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (57 bp):
CATACCTTTCCATTGAAATAGCCATGGCCGAATGCCTTGGTTTCCTTTGTTTCAATC
Found at i:86536178 original size:55 final size:55
Alignment explanation
Indices: 86536093--86536200 Score: 180
Period size: 55 Copynumber: 2.0 Consensus size: 55
86536083 CACTGGAGCT
*
86536093 TCGGTTAAACAGGTCTTTAGCCGATTGAAACTCTCCCGACAGTTTTCTGTCCACC
1 TCGGTTAAACAGGTCTTTAGCCGATCGAAACTCTCCCGACAGTTTTCTGTCCACC
* * *
86536148 TCGGTTAAACAGGTTTTTAGTCGATCGAAACTTTCCCGACAGTTTTCTGTCCA
1 TCGGTTAAACAGGTCTTTAGCCGATCGAAACTCTCCCGACAGTTTTCTGTCCA
86536201 TTCAAACTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (55 bp):
TCGGTTAAACAGGTCTTTAGCCGATCGAAACTCTCCCGACAGTTTTCTGTCCACC
Found at i:86541057 original size:29 final size:27
Alignment explanation
Indices: 86541039--86541108 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86541029 ATATTAAGTC
86541039 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
86541066 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
86541094 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
86541109 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:86541102 original size:28 final size:28
Alignment explanation
Indices: 86541039--86541136 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
86541029 ATATTAAGTC
*
86541039 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86541066 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86541094 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86541123 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86541137 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86544504 original size:27 final size:27
Alignment explanation
Indices: 86544471--86544594 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
86544461 TATAGGGTAG
86544471 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
86544498 AAATACCAAAATACCCTTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
86544525 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
86544552 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
86544579 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
86544595 TTGACTTTCT
Statistics
Matches: 79, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.06
27 70 0.89
28 4 0.05
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:86544582 original size:54 final size:55
Alignment explanation
Indices: 86544471--86544595 Score: 155
Period size: 54 Copynumber: 2.3 Consensus size: 55
86544461 TATAGGGTAG
* * * * ***
86544471 AATTACCAAAATACCC-CTAGTTTGTAAAAATACCAAAATACCCTTGGTTTGTGA
1 AATTACCGAAATACCCTCTAATTTGTAAAAATACCAAAATACCCCTGATTTACAA
*
86544525 AATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTCTAATTTGTAAAAATACCAAAATACCCCTGATTTACAA
*
86544579 AATTACAGAAATACCCT
1 AATTACCGAAATACCCT
86544596 TGACTTTCTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 60 0.98
55 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAAATACCAAAATACCCCTGATTTACAA
Found at i:86544646 original size:27 final size:28
Alignment explanation
Indices: 86544606--86544657 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
86544596 TGACTTTCTA
*
86544606 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACTAGAAATACCCTTGGTTTAC
86544633 AAAATTACTA-AAATACCCTTGGTTT
1 AAAATTACTAGAAATACCCTTGGTTT
86544658 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (28 bp):
AAAATTACTAGAAATACCCTTGGTTTAC
Found at i:86544775 original size:27 final size:27
Alignment explanation
Indices: 86544698--86544775 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
86544688 AAATGACTAA
* *
86544698 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* * *
86544725 AA-AGCCCCTGTAGGGGAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
86544752 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
86544776 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 37 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:86545619 original size:25 final size:25
Alignment explanation
Indices: 86545585--86545679 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
86545575 AGGAAGTGCT
*
86545585 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCG
*
86545610 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCG
* * *
86545635 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCG
*
86545660 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTATGCCCCAGTT
86545680 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTACCG
Found at i:86545692 original size:24 final size:24
Alignment explanation
Indices: 86545635--86545706 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
86545625 CAGTTTACCG
86545635 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
86545659 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
86545683 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
86545707 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:86545703 original size:50 final size:51
Alignment explanation
Indices: 86545583--86545704 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 51
86545573 GGAGGAAGTG
* *
86545583 CTAAAAGGGCTATGCCT-CAGTTTACCGAAAAGGGCTATGCCTCAGTTTAC
1 CTAAAAGGGCTATGCCTCCAGTTTACCAAAAAGGGCTATGCCCCAGTTTAC
* * * *
86545633 CGAAAAGGGCTTTGCC-CCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-
1 CTAAAAGGGCTATGCCTCCAGTTTACCAAAAAGGGCTATGCCCCAGTTTAC
* *
86545681 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCCTCCAGTT
86545705 ATATGATAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
48 5 0.08
49 10 0.17
50 44 0.75
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (51 bp):
CTAAAAGGGCTATGCCTCCAGTTTACCAAAAAGGGCTATGCCCCAGTTTAC
Found at i:86545948 original size:31 final size:31
Alignment explanation
Indices: 86545899--86545981 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
86545889 CGCTTACAAT
86545899 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
86545929 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
86545960 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
86545982 TCAAGATTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Done.