Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 264 of 310
Found at i:87110307 original size:27 final size:27
Alignment explanation
Indices: 87110237--87110310 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
87110227 AGCATGGCTG
* *
87110237 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
87110263 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
87110290 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
87110311 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:87110317 original size:27 final size:27
Alignment explanation
Indices: 87110261--87110318 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
87110251 GTGACAGAGT
* * *
87110261 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
87110288 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
87110315 CACC
1 CACC
87110319 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:87110523 original size:22 final size:22
Alignment explanation
Indices: 87110475--87110533 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
87110465 GTAAATACGT
*
87110475 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
87110497 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
87110519 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
87110534 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:87110697 original size:26 final size:27
Alignment explanation
Indices: 87110621--87110730 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
87110611 TCGATCGGTT
* * * *
87110621 AACAAATA-TTGTGGCAGAGGCACCAA
1 AACAGATATTTGTGGCATAGCCACCAG
*
87110647 ATACAGATA-TTGTGGCAGAGCCACCAG
1 A-ACAGATATTTGTGGCATAGCCACCAG
*
87110674 AACAGATATTTGTGGCATA-ACACCAG
1 AACAGATATTTGTGGCATAGCCACCAG
87110700 AAACAGATATTTGTGGCATAGCCACCAG
1 -AACAGATATTTGTGGCATAGCCACCAG
87110728 AAC
1 AAC
87110731 GCTTCCTCCG
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 14 0.19
27 54 0.73
28 6 0.08
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
AACAGATATTTGTGGCATAGCCACCAG
Found at i:87110992 original size:27 final size:27
Alignment explanation
Indices: 87110929--87111179 Score: 385
Period size: 27 Copynumber: 9.3 Consensus size: 27
87110919 GGGGCAAAAT
* * **
87110929 GGTAATTTTACCCCACAATGGTATCTTC
1 GGTAATTCTACCCTACAGGGGTAT-TTC
87110957 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87110984 GGTAGTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87111011 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
87111038 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87111065 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
87111092 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87111119 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87111146 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
87111173 GGTAATT
1 GGTAATT
87111180 TTGTAAATCG
Statistics
Matches: 204, Mismatches: 19, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
27 184 0.90
28 20 0.10
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:87111230 original size:27 final size:26
Alignment explanation
Indices: 87111161--87111233 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
87111151 TTCTACCCTA
*
87111161 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTT-GGTAATTCTGTAAAT
* ***
87111188 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGT-ATTTGGTAATTCTGTAAAT
87111215 CAAGGGTACTTTGGTAATT
1 CAAGGGTA-TTTGGTAATT
87111234 TTACAAGTCG
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.34
Consensus pattern (26 bp):
CAAGGGTATTTGGTAATTCTGTAAAT
Found at i:87111259 original size:27 final size:27
Alignment explanation
Indices: 87111229--87111293 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
87111219 GGTACTTTGG
87111229 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * *
87111256 TAATTTTACAGGTCGAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
87111283 TAATTTCACAA
1 TAATTTTACAA
87111294 ATTAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:87111700 original size:27 final size:27
Alignment explanation
Indices: 87111272--87111693 Score: 664
Period size: 27 Copynumber: 15.6 Consensus size: 27
87111262 TACAGGTCGA
* * **
87111272 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
87111299 GGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
87111326 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
87111353 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
87111380 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
87111407 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
87111434 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
87111461 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
87111488 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
87111515 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
87111542 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
87111569 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
87111596 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
87111623 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
87111650 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
87111677 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
87111694 GGTAAACTAA
Statistics
Matches: 364, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 364 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:87111700 original size:54 final size:54
Alignment explanation
Indices: 87111200--87111693 Score: 657
Period size: 54 Copynumber: 9.1 Consensus size: 54
87111190 AGGGTAAAAC
* * * * ** *
87111200 GGTAATTCTGTAAATCAAGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTT
** * *** * * * **
87111254 AATAATTTTACAGGTCGAGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* * * *
87111308 GGTAATTTTAGAAACTAGGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* * *
87111362 GGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* *
87111416 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* *
87111470 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* *
87111524 GGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
*
87111578 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* *
87111632 GGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
*
87111686 AGTAATTT
1 GGTAATTT
87111694 GGTAAACTAA
Statistics
Matches: 398, Mismatches: 41, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
54 397 1.00
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
GGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
Found at i:87113635 original size:6 final size:6
Alignment explanation
Indices: 87113624--87113680 Score: 62
Period size: 6 Copynumber: 9.3 Consensus size: 6
87113614 AAGAAACATT
* * *
87113624 ATCAGA ACCAGA ATCAGA ATCAGA ATCAGA ATTACGTG A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
87113673 ATCAGA AT
1 ATCAGA AT
87113681 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
5 1 0.02
6 38 0.90
7 2 0.05
8 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:87113835 original size:27 final size:26
Alignment explanation
Indices: 87113798--87113863 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
87113788 AGCATGGCTG
*
87113798 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
87113824 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
87113851 CCAGAATCAGATA
1 CCAGAA-CAGATA
87113864 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:87113868 original size:27 final size:27
Alignment explanation
Indices: 87113798--87113871 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
87113788 AGCATGGCTG
* *
87113798 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
87113824 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
87113851 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
87113872 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:87113878 original size:27 final size:27
Alignment explanation
Indices: 87113822--87113879 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
87113812 GTGACAGAGT
* * *
87113822 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
87113849 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
87113876 CACC
1 CACC
87113880 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:87114084 original size:22 final size:22
Alignment explanation
Indices: 87114036--87114094 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
87114026 GTAAATACGT
*
87114036 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
87114058 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
87114080 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
87114095 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:87114261 original size:27 final size:26
Alignment explanation
Indices: 87114182--87114264 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
87114172 TCGATCGGTC
* * *
87114182 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
87114208 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
87114235 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
87114262 AAC
1 AAC
87114265 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:87114621 original size:81 final size:80
Alignment explanation
Indices: 87114466--87114657 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 80
87114456 GCAAAATGGT
* * * * * * * * *
87114466 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTATTTCGGTATTTCTACCCTA
1 AATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAAAGGGTATTTCAGTAATTATACCCTA
*
87114531 TAAGGGTATTT-TGA
66 TAAGGGTATTTCGGA
* *
87114545 TAATTCTACCCTTCAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTATACCC
1 -AATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTA-AAGGGTATTTCAGTAATTATACCC
*
87114610 TATAGGGGTATTTCGGA
64 TATAAGGGTATTTCGGA
*
87114627 AATTCTACCCTACAGGGGTATTTTAGTAATT
1 AATTCTACCCTACAGGGGTATTTTGGTAATT
87114658 TCACAATCAA
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 32 0.34
81 61 0.64
82 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (80 bp):
AATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAAAGGGTATTTCAGTAATTATACCCTA
TAAGGGTATTTCGGA
Found at i:87114657 original size:27 final size:27
Alignment explanation
Indices: 87114463--87114649 Score: 205
Period size: 27 Copynumber: 7.0 Consensus size: 27
87114453 GGGGCAAAAT
* * *
87114463 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
87114490 GGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
87114516 GGTATTTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
87114543 GATAATTCTACCCTTCAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
87114570 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
87114597 AGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
87114624 GGAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
87114650 TAGTAATTTC
Statistics
Matches: 134, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 23 0.17
27 111 0.83
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:87115038 original size:108 final size:107
Alignment explanation
Indices: 87114667--87115049 Score: 493
Period size: 108 Copynumber: 3.6 Consensus size: 107
87114657 TTCACAATCA
* * * ** * * *
87114667 AGGGCAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGCGTAAACCA
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAACTGAGGGTAAAACG
* * * *
87114732 GTAATTATGTAAATCAAGGGTAAAACGGTAATTT-TACAAATCG
66 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTTGTA-AACT-G
* * * *
87114775 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAACTGAAGGTAAAACG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAACTGAGGGTAAAACG
87114840 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAACTG
66 GTAATTCTGTAAATCGAGGGTAAAACAGTAA-TTTGTAAACTG
* *
87114883 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAA-TCCAGGGTAAAAC
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAACT-GAGGGTAAAAC
* *
87114947 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTG
65 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATT-TGTAAACTG
* *
87114991 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAA-TCGAGGGT
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAACT-GAGGGT
87115050 GAAATAGGTA
Statistics
Matches: 245, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
107 3 0.01
108 234 0.96
109 6 0.02
110 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (107 bp):
AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAACTGAGGGTAAAACG
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTTGTAAACTG
Found at i:87115054 original size:27 final size:27
Alignment explanation
Indices: 87114662--87115049 Score: 433
Period size: 27 Copynumber: 14.4 Consensus size: 27
87114652 GTAATTTCAC
* * *
87114662 AATCAAGGGCAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
87114689 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * * *
87114716 AA-CTGAGCGTAAACCAGTAATTATGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
87114743 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
87114770 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
87114797 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
87114824 AA-CTGAAGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
87114851 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
87114878 AA-CTGAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
87114905 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
87114932 AATCCAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
87114959 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
87114986 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
87115013 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
87115040 AATCGAGGGT
1 AATCGAGGGT
87115050 GAAATAGGTA
Statistics
Matches: 307, Mismatches: 46, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
26 4 0.01
27 299 0.97
28 4 0.01
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:87117456 original size:49 final size:47
Alignment explanation
Indices: 87117348--87117800 Score: 669
Period size: 47 Copynumber: 9.6 Consensus size: 47
87117338 TCCTTTGGGA
* * *
87117348 CTTATCACAGT-TATACA-TTTC-CACTTCCATCACATTGACCATTCGGC
1 CTTATCACA-TATATACACTTTCACA-TT-CATCACATCGGCCATTAGGC
* * * *
87117395 CTTATCATATATATATACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87117442 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87117489 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87117538 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87117587 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
87117634 CTTATCACATATATACACTTTCACATTCAGCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
87117681 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87117728 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87117775 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
87117801 CACAATTATC
Statistics
Matches: 378, Mismatches: 23, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 273 0.72
48 6 0.02
49 98 0.26
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87117759 original size:25 final size:25
Alignment explanation
Indices: 87117684--87117762 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
87117674 ATTCGGCCTT
87117684 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** * *
87117709 ATCACAT-TGGCCAC--TCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
87117731 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
87117756 ATCACAT
1 ATCACAT
87117763 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.23
23 7 0.18
24 7 0.18
25 16 0.41
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:87123818 original size:14 final size:16
Alignment explanation
Indices: 87123794--87123826 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
87123784 ATTTTATGTG
87123794 TTTATTATGTGT-AAA
1 TTTATTATGTGTGAAA
87123809 TTTA-TATGTGTGAAA
1 TTTATTATGTGTGAAA
87123824 TTT
1 TTT
87123827 TCGTGATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGAAA
Found at i:87125009 original size:45 final size:44
Alignment explanation
Indices: 87124945--87125074 Score: 131
Period size: 45 Copynumber: 3.0 Consensus size: 44
87124935 TAGGATTTCC
* * *
87124945 TATATGTGTTTTCGTGTAAGACCACGTTTGGGACGTTGGCATCGA
1 TATATGTGGTTACGTGTAAGACCACGTCTGGGACGTTGGCATC-A
* *
87124990 TATATGTGGTTACGTGTAAGACTATGTCTGGGACAG-TGGCATCA
1 TATATGTGGTTACGTGTAAGACCACGTCTGGGAC-GTTGGCATCA
* * * *
87125034 -ATATG-AGATAGCATGTAAGACCACGTCTGGGACATTGGCAT
1 TATATGTGGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
87125075 TGTACGATAT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 3 0.04
43 30 0.42
44 1 0.01
45 36 0.51
46 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (44 bp):
TATATGTGGTTACGTGTAAGACCACGTCTGGGACGTTGGCATCA
Found at i:87127969 original size:44 final size:42
Alignment explanation
Indices: 87127903--87127997 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 42
87127893 TGTGTTATCA
* *
87127903 TGTAAGACCAGGTCTGGGACGTTGACATCA-ACTTATGATTTACG
1 TGTAAGACCACGTCTAGGACGTTGACATCATA-TT-TGATTT-CG
* * *
87127947 TGTAAGACCACGTCTAGTACGTTGGCATCATATTTGATTTTG
1 TGTAAGACCACGTCTAGGACGTTGACATCATATTTGATTTCG
87127989 TGTAAGACC
1 TGTAAGACC
87127998 CTGTCTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 10 0.22
43 6 0.13
44 28 0.62
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACGTTGACATCATATTTGATTTCG
Found at i:87129250 original size:24 final size:24
Alignment explanation
Indices: 87129223--87129275 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
87129213 AAAAATCGAT
87129223 TATCTCATTATACAGAAATTTAAA
1 TATCTCATTATACAGAAATTTAAA
87129247 TATCTCATTATACAGAAATTTAAA
1 TATCTCATTATACAGAAATTTAAA
87129271 TATCT
1 TATCT
87129276 GAGAATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (24 bp):
TATCTCATTATACAGAAATTTAAA
Found at i:87141122 original size:41 final size:40
Alignment explanation
Indices: 87141053--87141149 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 40
87141043 AATATTTTCT
87141053 TACACTTAGTTGCATCTCAAATAACCGAAAATAGGTTAGAATCA
1 TACACTTAG-TGC--CTCAAATAACCGAAAATAGGTTA-AATCA
* ** * *
87141097 TACACTTAGTGCCTCAAATAGCCGAAGCTAGTTTAAATCG
1 TACACTTAGTGCCTCAAATAACCGAAAATAGGTTAAATCA
*
87141137 CACACTTAGTGCC
1 TACACTTAGTGCC
87141150 AAAGCTAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 16 0.34
41 19 0.40
43 3 0.06
44 9 0.19
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (40 bp):
TACACTTAGTGCCTCAAATAACCGAAAATAGGTTAAATCA
Found at i:87141162 original size:30 final size:30
Alignment explanation
Indices: 87141121--87141182 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
87141111 CAAATAGCCG
*
87141121 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAATTTAAATCGCACACTTAGTGCCA
87141151 AAGCTAATTTAAATCGCACACTTAGTGCCA
1 AAGCTAATTTAAATCGCACACTTAGTGCCA
87141181 AA
1 AA
87141183 ACTTCCGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (30 bp):
AAGCTAATTTAAATCGCACACTTAGTGCCA
Found at i:87172133 original size:26 final size:26
Alignment explanation
Indices: 87172097--87172149 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
87172087 TTAGCAGTGA
87172097 GACGGCACATTTCAGACATTCTTCTG
1 GACGGCACATTTCAGACATTCTTCTG
87172123 GACGGCACATTTCAGACATTCTTCTG
1 GACGGCACATTTCAGACATTCTTCTG
87172149 G
1 G
87172150 TGTACAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GACGGCACATTTCAGACATTCTTCTG
Found at i:87174275 original size:40 final size:40
Alignment explanation
Indices: 87174238--87174462 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
87174228 GCTACTCGTT
* *
87174238 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
87174278 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
87174318 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
87174358 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
87174397 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
87174438 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
87174463 CATCATTCGA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:87174422 original size:119 final size:120
Alignment explanation
Indices: 87174240--87174462 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
87174230 TACTCGTTCA
*
87174240 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
87174305 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACC
* * **
87174360 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
87174422 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
87174463 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCACC
Found at i:87175954 original size:56 final size:56
Alignment explanation
Indices: 87175887--87176006 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
87175877 TATTAGTTTA
87175887 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
87175943 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
87175999 TTGCCCAT
1 TTGCCCAT
87176007 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:87182592 original size:79 final size:81
Alignment explanation
Indices: 87182490--87182674 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
87182480 GCTCCTCGTT
* *
87182490 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
87182553 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
87182570 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
87182634 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
87182650 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87182675 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:87182674 original size:40 final size:40
Alignment explanation
Indices: 87182490--87182674 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
87182480 GCTCCTCGTT
* *
87182490 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
87182530 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
87182570 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
87182609 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
87182650 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87182675 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:87192205 original size:115 final size:115
Alignment explanation
Indices: 87192003--87192232 Score: 442
Period size: 115 Copynumber: 2.0 Consensus size: 115
87191993 AAACTCAAAA
*
87192003 TATACAAGTCATTTTACAAATTTAGGTCTTCGGATAGTGTGAACGAGCCTTCAACCTATCCCGAT
1 TATACAAGCCATTTTACAAATTTAGGTCTTCGGATAGTGTGAACGAGCCTTCAACCTATCCCGAT
87192068 TCTCAAGCCGGCTTGTCAAAACTACAATGAAGGAAAATGAGGGCGTAAGC
66 TCTCAAGCCGGCTTGTCAAAACTACAATGAAGGAAAATGAGGGCGTAAGC
*
87192118 TATACAAGCCATTTTACCAATTTAGGTCTTCGGATAGTGTGAACGAGCCTTCAACCTATCCCGAT
1 TATACAAGCCATTTTACAAATTTAGGTCTTCGGATAGTGTGAACGAGCCTTCAACCTATCCCGAT
87192183 TCTCAAGCCGGCTTGTCAAAACTACAATGAAGGAAAATGAGGGCGTAAGC
66 TCTCAAGCCGGCTTGTCAAAACTACAATGAAGGAAAATGAGGGCGTAAGC
87192233 ATAAATGGTT
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
115 113 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (115 bp):
TATACAAGCCATTTTACAAATTTAGGTCTTCGGATAGTGTGAACGAGCCTTCAACCTATCCCGAT
TCTCAAGCCGGCTTGTCAAAACTACAATGAAGGAAAATGAGGGCGTAAGC
Found at i:87197017 original size:21 final size:21
Alignment explanation
Indices: 87196993--87197033 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
87196983 TCATCAGATC
*
87196993 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
87197014 TACATGTTGAGGAATCGGGG
1 TACACCTTGAGGAATCGGGG
87197034 AAGGTGGAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.17, G:0.39, T:0.22
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:87211698 original size:93 final size:93
Alignment explanation
Indices: 87211539--87211711 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
87211529 CGCCCATAAG
* * * * *
87211539 CGAACTAGGACCCAACTCAATGAGCTCGGGCGTTCGCATCCATAGGTTAACTCGGACTCAACTCA
1 CGAACTAGGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87211604 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
87211632 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTAGGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
87211697 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
87211712 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTAGGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:87211707 original size:46 final size:46
Alignment explanation
Indices: 87211532--87211707 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
87211522 TGTAACCCGC
* * * * * *
87211532 CCATAAGCGAACTAGGACCCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* ** *
87211578 CCATAGGTTAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
87211628 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
87211671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
87211708 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.56
47 28 0.27
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:87211726 original size:46 final size:45
Alignment explanation
Indices: 87211587--87211726 Score: 119
Period size: 46 Copynumber: 3.0 Consensus size: 45
87211577 TCCATAGGTT
* * *
87211587 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACATCTCA-CG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT-C--CTAAGTG
* *
87211634 AACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATCC-TAAGTG
87211680 AACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-AGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCC--ATATCCTAAGTG
87211726 A
1 A
87211727 CATGTCACTT
Statistics
Matches: 77, Mismatches: 7, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
44 5 0.06
45 2 0.03
46 34 0.44
47 29 0.38
48 4 0.05
49 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCCTAAGTG
Found at i:87218735 original size:20 final size:21
Alignment explanation
Indices: 87218700--87218756 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
87218690 TGATACGTGG
87218700 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
87218718 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
87218739 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
87218757 GAATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:87218835 original size:26 final size:26
Alignment explanation
Indices: 87218806--87218896 Score: 123
Period size: 26 Copynumber: 3.6 Consensus size: 26
87218796 GAGGAAGTGC
*
87218806 AAAAGGGC-TATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATCG
* *
87218831 AAAAAGGCTTATGCCTTAGTTTATCG
1 AAAAGGGCTTATGCCCTAGTTTATCG
* *
87218857 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTATCG
87218883 AAAAGGGCTT-TGCC
1 AAAAGGGCTTATGCC
87218897 TCCAGATATA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 11 0.19
26 47 0.81
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTATCG
Found at i:87225322 original size:21 final size:22
Alignment explanation
Indices: 87225289--87225331 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
87225279 TAGGAATTAG
*
87225289 GGTGTGTCGTTTTCTC-CTTTT
1 GGTGTGTCGTTTTATCTCTTTT
87225310 GGTGTAGTC-TTTTATCTCTTTT
1 GGTGT-GTCGTTTTATCTCTTTT
87225332 TTCTTTTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.05, C:0.16, G:0.21, T:0.58
Consensus pattern (22 bp):
GGTGTGTCGTTTTATCTCTTTT
Found at i:87225332 original size:23 final size:21
Alignment explanation
Indices: 87225289--87225332 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
87225279 TAGGAATTAG
87225289 GGTGTGTCGTTTTCTCCTTTT
1 GGTGTGTCGTTTTCTCCTTTT
* *
87225310 GGTGTAGTCTTTTATCTCTTTTT
1 GGTGT-GTCGTTT-TCTCCTTTT
87225333 TCTTTTCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 6 0.32
23 8 0.42
ACGTcount: A:0.05, C:0.16, G:0.20, T:0.59
Consensus pattern (21 bp):
GGTGTGTCGTTTTCTCCTTTT
Found at i:87226558 original size:20 final size:20
Alignment explanation
Indices: 87226532--87226578 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
87226522 GATATGATAT
*
87226532 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
87226552 GCATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
87226572 ACATGAT
1 ACATGAT
87226579 GAATTCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:87226667 original size:26 final size:26
Alignment explanation
Indices: 87226628--87226763 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
87226618 GAGGAAGTGC
*
87226628 AAAAGGG-TTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
87226653 AAAAGGGCTTATGCCCTAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
87226679 AAAAGGGCTTATGCCCCAGTGTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
87226705 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
87226731 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
87226754 AAAAGAGGCT
1 AAAAG-GGCT
87226764 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 15 0.15
26 72 0.73
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:87229096 original size:92 final size:92
Alignment explanation
Indices: 87228994--87229322 Score: 433
Period size: 92 Copynumber: 3.6 Consensus size: 92
87228984 TAGTATGTAA
* * * *
87228994 CGTAGCTAACATACATGCGGTACAGTGCAATACGGTAATCTGCTATACCAATAGGTTGCAGTAAA
1 CGTAGCTAACATACATGCGATACAGTGCAATGCGGTAATCCGCTATACCAATAGATTGCAGTAAA
* * * *
87229059 ACTATTAGTTCAGTCAACGGCACGTAG
66 ACTGTCAGTTCAGTCAAAGGTACGTAG
* * * * *
87229086 CTTAGCTAACATACATGCGATACAGTGCAATGCAGTAATCCGCTATATCGATACATTGCAGTAAA
1 CGTAGCTAACATACATGCGATACAGTGCAATGCGGTAATCCGCTATACCAATAGATTGCAGTAAA
87229151 ACTGTCAGTTCAGTCAAAGGTACGTAG
66 ACTGTCAGTTCAGTCAAAGGTACGTAG
* * * * *
87229178 CGTAGCTAACGTACATGCAATACAGTGCAATGCGGTAATCCGCTATACCGATAGACTGTAGTAAA
1 CGTAGCTAACATACATGCGATACAGTGCAATGCGGTAATCCGCTATACCAATAGATTGCAGTAAA
* * *
87229243 ATTGCCAGTTCAGTCAAAGGTATGTAG
66 ACTGTCAGTTCAGTCAAAGGTACGTAG
* * * *
87229270 CGTAGCTAACGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACTAATA
1 CGTAGCTAACATACATGCGATACAGTGCAATGCGGTAATCCGCTATACCAATA
87229323 TCGGTAAAGT
Statistics
Matches: 208, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 208 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (92 bp):
CGTAGCTAACATACATGCGATACAGTGCAATGCGGTAATCCGCTATACCAATAGATTGCAGTAAA
ACTGTCAGTTCAGTCAAAGGTACGTAG
Found at i:87236104 original size:96 final size:97
Alignment explanation
Indices: 87235940--87236163 Score: 285
Period size: 96 Copynumber: 2.3 Consensus size: 97
87235930 TGAGGTCTCA
* *
87235940 TGTAAGACCATGTCTGGGATATGGCAT-TGGCATCCAGATGAGAGCCAGTGTAAAACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCTGGCATCCAGATGAGAGCCAATGTAAAACCATGTCTG
*
87236004 GGACATGGCATC-AGCGTTGATATCTGTGCCAG
66 GGACATGGCATCGA-CGATGATATCTGTGCCAG
* ** * * * *
87236036 TGTAAGACCATGTCTGGGACATGGCATCT-GCTTTGATATGTGTGCCAATGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCTGGCATCCAGATGAGAGCCAATGTAAAACCATGTCTG
* *
87236100 GGACATGGCATCGACGATGGTATGTGTGCCAG
66 GGACATGGCATCGACGATGATATCTGTGCCAG
* *
87236132 TGTAAGACCATGTCTGGAACATAGCATC-GGCA
1 TGTAAGACCATGTCTGGGACATGGCATCTGGCA
87236164 CGGATGTGAG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
96 108 0.98
97 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (97 bp):
TGTAAGACCATGTCTGGGACATGGCATCTGGCATCCAGATGAGAGCCAATGTAAAACCATGTCTG
GGACATGGCATCGACGATGATATCTGTGCCAG
Found at i:87236159 original size:48 final size:48
Alignment explanation
Indices: 87235940--87236160 Score: 257
Period size: 48 Copynumber: 4.6 Consensus size: 48
87235930 TGAGGTCTCA
* * * * ** * * *
87235940 TGTAAGACCATGTCTGGGATATGGCATTGGCATCCAGATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* *
87235988 TGTAAAACCATGTCTGGGACATGGCATC-AGCGTTGATATCTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CGTTGATATGTGTGCCAG
* *
87236036 TGTAAGACCATGTCTGGGACATGGCATCTG-CTTTGATATGTGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATC-GACGTTGATATGTGTGCCAG
* *
87236084 TGTAAGACCATGTCTGGGACATGGCATCGACGATGGTATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
* *
87236132 TGTAAGACCATGTCTGGAACATAGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
87236161 GCACGGATGT
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 147 0.99
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
Found at i:87241123 original size:20 final size:20
Alignment explanation
Indices: 87241098--87241149 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
87241088 TGGGCTAAGG
87241098 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
87241118 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
87241138 ACACGGGCGTGT
1 ACACGGGCGTGT
87241150 GTGACCACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:87244675 original size:41 final size:41
Alignment explanation
Indices: 87244618--87244700 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
87244608 AGAACGGGTG
87244618 GCCACTCCGAATTCCCTCACAACTCCAAGCCCACTATGGTT
1 GCCACTCCGAATTCCCTCACAACTCCAAGCCCACTATGGTT
87244659 GCCACTCCGAATTCCCTCACAACTCCAAGCCCACTATGGTT
1 GCCACTCCGAATTCCCTCACAACTCCAAGCCCACTATGGTT
87244700 G
1 G
87244701 GGGATTACCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.24, C:0.41, G:0.13, T:0.22
Consensus pattern (41 bp):
GCCACTCCGAATTCCCTCACAACTCCAAGCCCACTATGGTT
Found at i:87245891 original size:26 final size:26
Alignment explanation
Indices: 87245860--87245967 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87245850 TGAAATGCCC
*
87245860 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
87245886 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
87245912 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
87245938 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87245964 ATCA
1 ATCA
87245968 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87252915 original size:26 final size:26
Alignment explanation
Indices: 87252884--87252991 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87252874 TGAAATGCCC
*
87252884 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
87252910 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
87252936 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
87252962 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87252988 ATCA
1 ATCA
87252992 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87256450 original size:45 final size:45
Alignment explanation
Indices: 87256347--87256521 Score: 268
Period size: 45 Copynumber: 4.0 Consensus size: 45
87256337 CCAAATTCAT
* * *
87256347 TCACCGGCATT-TTGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
87256389 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
87256434 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
87256479 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
87256522 CTGTAACACC
Statistics
Matches: 124, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
42 11 0.09
43 17 0.14
44 4 0.03
45 91 0.73
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:87257976 original size:41 final size:41
Alignment explanation
Indices: 87257931--87258099 Score: 157
Period size: 41 Copynumber: 4.1 Consensus size: 41
87257921 GCACAAACAT
* *
87257931 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * *
87257972 CCTTC-GAGACCAAGCTCGGATTA-GACCACTGGCTCAAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * *
87258013 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
87258053 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
87258094 CCTTCG
1 CCTTCG
87258100 AGACCAAGCT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
40 42 0.40
41 57 0.54
42 7 0.07
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:87258100 original size:41 final size:41
Alignment explanation
Indices: 87257953--87258100 Score: 185
Period size: 41 Copynumber: 3.6 Consensus size: 41
87257943 AGCCCGATTC
* * *
87257953 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * *
87257992 TTAGACCACTGGCTCAAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* *
87258035 TGA-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
87258075 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
87258101 GACCAAGCTC
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.38
41 49 0.54
43 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:87260402 original size:25 final size:25
Alignment explanation
Indices: 87260386--87260591 Score: 322
Period size: 25 Copynumber: 8.2 Consensus size: 25
87260376 ATAATAAGGG
* *
87260386 CAAATTTAACCGGAAATATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
87260411 CAAATTTAACCGAAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
87260436 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
**
87260461 CAAATTTAGTCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
87260486 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
87260511 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
** *
87260536 CAAATTTAACTTGAATTATTATGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
87260561 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
87260586 CAAATT
1 CAAATT
87260592 AACAAGTTTA
Statistics
Matches: 164, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 164 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.30
Consensus pattern (25 bp):
CAAATTTAACCGGAATTATTAAGAA
Found at i:87269847 original size:42 final size:41
Alignment explanation
Indices: 87269767--87269908 Score: 155
Period size: 41 Copynumber: 3.4 Consensus size: 41
87269757 AGTAAGGTAC
87269767 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
87269808 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
87269850 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
87269891 TCGAAGGGCTTTTGAGCC
1 TCGAAGGGCTTTTGAGCC
87269909 GGTGTTAAGA
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
40 8 0.10
41 35 0.42
42 28 0.34
43 12 0.14
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:87271507 original size:39 final size:40
Alignment explanation
Indices: 87271462--87271670 Score: 125
Period size: 41 Copynumber: 5.2 Consensus size: 40
87271452 CGGGGTTTAG
* * *
87271462 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
87271501 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
87271541 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
87271581 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * *
87271622 CCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
87271663 CCGGATAT
1 CCGGATAT
87271671 CATTCGAGTA
Statistics
Matches: 150, Mismatches: 16, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
39 18 0.12
40 61 0.41
41 68 0.45
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:87271612 original size:41 final size:41
Alignment explanation
Indices: 87271485--87271670 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
87271475 CTCGCACAAG
* * * * * *
87271485 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
87271525 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
87271565 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
87271606 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
87271647 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
87271671 CATTCGAGTA
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.02
40 59 0.44
41 68 0.51
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:87271619 original size:81 final size:82
Alignment explanation
Indices: 87271485--87271668 Score: 257
Period size: 81 Copynumber: 2.3 Consensus size: 82
87271475 CTCGCACAAG
* * * * * * *
87271485 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
*
87271549 AGTCGC-TAGCACAAAT
66 AGTCGCTTAGCACAAAA
*
87271565 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATA
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATA
87271629 TAGTCGCTTAGCACAAAA
65 TAGTCGCTTAGCACAAAA
87271647 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
87271669 ATCATTCGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 2 0.02
80 21 0.23
81 38 0.42
82 26 0.29
83 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (82 bp):
GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
AGTCGCTTAGCACAAAA
Found at i:87275057 original size:42 final size:42
Alignment explanation
Indices: 87274935--87275064 Score: 170
Period size: 42 Copynumber: 3.1 Consensus size: 42
87274925 AACAAAACCA
* * *
87274935 TGTGTCATACATGACTGAGAGACATGCCCGTATCTCAGCCCG
1 TGTGTCATACATGACTGAGACACATGCCCGTGTCTCTGCCCG
* ** *
87274977 TGTGTCATACACGGTTGAGACACATGCCCGTGTTTCTGCCCG
1 TGTGTCATACATGACTGAGACACATGCCCGTGTCTCTGCCCG
* * *
87275019 TGTGTCACACATGACTGAGACACATGCCCCTGTCTCTGCTCG
1 TGTGTCATACATGACTGAGACACATGCCCGTGTCTCTGCCCG
87275061 TGTG
1 TGTG
87275065 GGCAAAAATA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTGTCATACATGACTGAGACACATGCCCGTGTCTCTGCCCG
Found at i:87277540 original size:19 final size:21
Alignment explanation
Indices: 87277509--87277553 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
87277499 AAAATAAAAT
*
87277509 AATAAT-TATAAAACATT-AA
1 AATAATGTATAAAAAATTCAA
87277528 AATAATGTA-AAAAAATTCAA
1 AATAATGTATAAAAAATTCAA
87277548 AA-AATG
1 AATAATG
87277554 AAACATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (21 bp):
AATAATGTATAAAAAATTCAA
Found at i:87278194 original size:124 final size:122
Alignment explanation
Indices: 87278048--87278344 Score: 431
Period size: 124 Copynumber: 2.4 Consensus size: 122
87278038 CATACTCAAA
* ** *
87278048 TTTTTCCCTTTATTTGTTGAATGATTGTACTAAAAGATTCTATTGTAGTTTTCCAATTTTTTCAA
1 TTTTTCCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCATAGTTTTCCAATTTTTCCAA
* * *
87278113 ATACTTCAAAACAAAATTTAC-TTAGTTTACTTTAGC-CCTTTACTTACATTTTACCCCT
66 ACACTTCAAAACAAAATTTACACTA-TTTACTTTA-CTCCTTTACTTACATATTA-CCCT
*
87278171 TTTTTCCCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCACAGTTTTCCAATTTTTCCA
1 TTTTT-CCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCATAGTTTTCCAATTTTTCCA
87278236 AACACTTCAAAACAAAATTTACACTATTTACTTTACTCCTTTACTTACATATTACCCT
65 AACACTTCAAAACAAAATTTACACTATTTACTTTACTCCTTTACTTACATATTACCCT
* *
87278294 TTTTT--TTTGTATTTGTTGAATGATTGTACCAAAAGATTCTATCCTAGTTTT
1 TTTTTCCCTT-TATTTGTTGAATGATTGTACCAAAAGATTCTATCATAGTTTT
87278345 TCAAACACTT
Statistics
Matches: 159, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
120 2 0.01
121 40 0.25
123 15 0.09
124 100 0.63
125 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (122 bp):
TTTTTCCCTTTATTTGTTGAATGATTGTACCAAAAGATTCTATCATAGTTTTCCAATTTTTCCAA
ACACTTCAAAACAAAATTTACACTATTTACTTTACTCCTTTACTTACATATTACCCT
Found at i:87282114 original size:53 final size:53
Alignment explanation
Indices: 87282047--87282152 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
87282037 AAGTAATAAA
87282047 CGAAGATATGATTTAGTTTGTCTTAATTACCCTTTGAGACAGTAATTAAGTTT
1 CGAAGATATGATTTAGTTTGTCTTAATTACCCTTTGAGACAGTAATTAAGTTT
87282100 CGAAGATATGATTTAGTTTGTCTTAATTACCCTTTGAGACAGTAATTAAGTTT
1 CGAAGATATGATTTAGTTTGTCTTAATTACCCTTTGAGACAGTAATTAAGTTT
87282153 AAGACCTAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (53 bp):
CGAAGATATGATTTAGTTTGTCTTAATTACCCTTTGAGACAGTAATTAAGTTT
Found at i:87283100 original size:25 final size:25
Alignment explanation
Indices: 87283054--87283101 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
87283044 CGACATTTAT
* *
87283054 ATACAAATGTTTTAAATTTTATATA
1 ATACAAATGTATTAAATATTATATA
87283079 ATACAAAT-TATTAAGATATTATA
1 ATACAAATGTATTAA-ATATTATA
87283102 ATTATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (25 bp):
ATACAAATGTATTAAATATTATATA
Found at i:87283109 original size:8 final size:8
Alignment explanation
Indices: 87283098--87283123 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
87283088 ATTAAGATAT
87283098 TATAATTA
1 TATAATTA
87283106 TATAATTA
1 TATAATTA
87283114 TATAATTA
1 TATAATTA
87283122 TA
1 TA
87283124 ATAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TATAATTA
Found at i:87283246 original size:27 final size:27
Alignment explanation
Indices: 87283208--87283262 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
87283198 ATATTAGTAG
87283208 ATAAGGTTGAACTGCTTGCAGGACACC
1 ATAAGGTTGAACTGCTTGCAGGACACC
87283235 ATAAGGTTGAACTGCTTGCAGGACACC
1 ATAAGGTTGAACTGCTTGCAGGACACC
87283262 A
1 A
87283263 CCATTGGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (27 bp):
ATAAGGTTGAACTGCTTGCAGGACACC
Found at i:87284225 original size:129 final size:130
Alignment explanation
Indices: 87284073--87284313 Score: 288
Period size: 129 Copynumber: 1.9 Consensus size: 130
87284063 TTAATTTCAC
* ** * * * * *
87284073 TTAAAATTCATGTATTTTGAAATTCAAAAGGATGTTTGACTATTTAGATTCGATGAAAAGAATCG
1 TTAAAATTCATGCATTTCAAAATTCAAAAGGATATTCGACTACTTAGATTCAACGAAAA-AATCG
***
87284138 AAACCCCGTAAGTTAGGGTATGGTTT-TCG-AGTTTCTAAATACGAAAAATTGCCTTTATTTTTA
65 AAACCCCGTAAGTTAGGGTACAATTTCTCGAAGTTTCTAAATACGAAAAATTGCCTTTATTTTTA
87284201 T
130 T
** * * * *
87284202 TTAAAATTCATGCATTTCAAAATTTGAAGGGATATTCGACTACTTAGGTTTAACGAGAAAATCGA
1 TTAAAATTCATGCATTTCAAAATTCAAAAGGATATTCGACTACTTAGATTCAACGAAAAAATCGA
* *
87284267 GACCCCGTAAGTTAGGGTACAATTTCTCGAATTTTCTAAATACGAAA
66 AACCCCGTAAGTTAGGGTACAATTTCTCGAAGTTTCTAAATACGAAA
87284314 TATTACCGGT
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
128 27 0.30
129 48 0.53
130 16 0.18
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (130 bp):
TTAAAATTCATGCATTTCAAAATTCAAAAGGATATTCGACTACTTAGATTCAACGAAAAAATCGA
AACCCCGTAAGTTAGGGTACAATTTCTCGAAGTTTCTAAATACGAAAAATTGCCTTTATTTTTAT
Found at i:87289537 original size:38 final size:37
Alignment explanation
Indices: 87289487--87289670 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
87289477 ATAGTATTAT
*
87289487 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
87289524 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
87289564 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
87289606 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
87289644 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
87289671 TTTTTATTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:87289555 original size:18 final size:18
Alignment explanation
Indices: 87289534--87289687 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
87289524 ATATTAAGAA
87289534 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
87289552 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
87289567 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
87289582 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
87289601 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
87289616 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
87289635 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
87289654 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
87289672 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
87289688 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:87289608 original size:120 final size:120
Alignment explanation
Indices: 87289469--87289949 Score: 777
Period size: 120 Copynumber: 4.0 Consensus size: 120
87289459 ATTATTAATC
* * * *
87289469 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
* *
87289534 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
* * * *
87289589 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
*
87289654 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
* *
87289709 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
*
87289774 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATT
66 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT
* *
87289829 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
87289894 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
87289950 ATGATTAAAT
Statistics
Matches: 349, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
120 342 0.98
121 7 0.02
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT
Found at i:87289812 original size:15 final size:15
Alignment explanation
Indices: 87289777--87289828 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
87289767 TTAAGAATTT
*
87289777 TATTAAATTAT-ATA
1 TATTTAATTATAATA
87289791 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
87289805 TATTTAATAATAAT-
1 TATTTAATTATAATA
87289819 TATGTTAATT
1 TAT-TTAATT
87289829 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:87289927 original size:16 final size:16
Alignment explanation
Indices: 87289906--87289947 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
87289896 TTATTAAATT
*
87289906 ATATATTTTAATTATA
1 ATATATTTTAATAATA
87289922 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
87289937 AT-TATGTTTAA
1 ATATAT-TTTAA
87289948 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:87289932 original size:15 final size:15
Alignment explanation
Indices: 87289897--87289938 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
87289887 TTAAGAATTT
*
87289897 TATTAAATTAT-ATA
1 TATTTAATTATAATA
87289911 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
87289925 TATTTAATAATAAT
1 TATTTAATTATAAT
87289939 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:87290188 original size:16 final size:16
Alignment explanation
Indices: 87290163--87290230 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
87290153 GATTTGCTAT
87290163 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
87290179 TACACATCTAATCCAT
1 TACACCTCTAATCCAA
87290195 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
87290211 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
87290227 TACA
1 TACA
87290231 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:87294943 original size:48 final size:48
Alignment explanation
Indices: 87294753--87294978 Score: 221
Period size: 48 Copynumber: 4.8 Consensus size: 48
87294743 GTTATGTACA
* *
87294753 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGATATGTA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
**** * *
87294801 ATTTTGTGTAAGACCATAGT-TGGG-C-T---ATCGTCATTGATATGTG
1 ATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATTGATATGTG
** * ** **
87294844 ATCCCATGTAAGACCATGTCTAAGACATGGCATTGGCATCGACCTACG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
87294892 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
* * * * *
87294940 ATCCTATGTAAGACCATATCCGGGATATGGAATTGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
87294979 CCTATCATGT
Statistics
Matches: 138, Mismatches: 33, Indels: 14
0.75 0.18 0.08
Matches are distributed among these distances:
42 2 0.01
43 28 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 102 0.74
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
Found at i:87308938 original size:43 final size:43
Alignment explanation
Indices: 87308880--87309048 Score: 200
Period size: 43 Copynumber: 4.0 Consensus size: 43
87308870 TAAGCTCGTA
* * *
87308880 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
* * * * * * *
87308922 CGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAA
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC-ACATAT
*
87308965 CAATGCCAATGTCCCTGACATGGTCTTACATGTAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
87309007 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
87309049 CTCGATAGCG
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 8 0.08
43 94 0.91
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
Found at i:87311236 original size:25 final size:25
Alignment explanation
Indices: 87311207--87311254 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
87311197 TTATAACATG
* * *
87311207 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
87311232 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
87311255 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:87311338 original size:11 final size:11
Alignment explanation
Indices: 87311302--87311357 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
87311292 CATGGTATGT
87311302 ATGATATGCAC
1 ATGATATGCAC
* *
87311313 ATGACATG--T
1 ATGATATGCAC
87311322 ATGATATGCAC
1 ATGATATGCAC
*
87311333 ATGATATG--T
1 ATGATATGCAC
87311342 ATGATATGCAC
1 ATGATATGCAC
87311353 ATGAT
1 ATGAT
87311358 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:87311357 original size:20 final size:20
Alignment explanation
Indices: 87311291--87311357 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
87311281 ATTTTGATAA
*
87311291 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
87311311 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
87311331 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
87311351 ACATGAT
1 ACATGAT
87311358 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:87311434 original size:24 final size:24
Alignment explanation
Indices: 87311407--87311572 Score: 187
Period size: 24 Copynumber: 7.0 Consensus size: 24
87311397 GAGGAAGCGA
87311407 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87311431 AAAA-GGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
87311454 AAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
87311478 AAAAGGGCTTACGCCCCATTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87311502 -AAAGGGCTTATGCCCCTGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
87311524 AGAAAAGGCTTTTGCCCCAATTATT
1 A-AAAGGGCTTATGCCCCAGTTATT
*
87311549 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87311573 ATGATAAAGC
Statistics
Matches: 119, Mismatches: 17, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
22 1 0.01
23 40 0.34
24 66 0.55
25 12 0.10
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:87311476 original size:47 final size:46
Alignment explanation
Indices: 87311407--87311572 Score: 181
Period size: 47 Copynumber: 3.5 Consensus size: 46
87311397 GAGGAAGCGA
* *
87311407 AAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGCTTATGCCCCAATTAT
* * *
87311453 CAAAAGGGCTTATACCCCAGTTATCAAAAGGGCTTACGCCCCATTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAA-GGCTTATGCCCCAATTAT
* * * *
87311501 TAAAGGGCTTATGCCCCTGTTATAGAAAAGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTAT-CAAAAGGCTTATGCCCCAATTA-T
*
87311549 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87311573 ATGATAAAGC
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
47 60 0.60
48 30 0.30
49 10 0.10
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGCTTATGCCCCAATTAT
Found at i:87311523 original size:71 final size:71
Alignment explanation
Indices: 87311407--87311572 Score: 201
Period size: 71 Copynumber: 2.3 Consensus size: 71
87311397 GAGGAAGCGA
* *
87311407 AAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATCA-AAAGGGCTTATACCCC
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTAT-AGAAAAGGCTTATACCCC
*
87311471 AGTTATC
65 AATTATC
* * * * *
87311478 AAAAGGGCTTACGCCCCATTTATTAAAGGGCTTATGCCCCTGTTATAGAAAAGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAGAAAAGGCTTATACCCCA
*
87311543 ATTATT
66 ATTATC
*
87311549 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
87311573 ATGATAAAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
70 1 0.01
71 70 0.86
72 10 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAGAAAAGGCTTATACCCCA
ATTATC
Found at i:87314173 original size:13 final size:13
Alignment explanation
Indices: 87314155--87314182 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
87314145 AGAAAATTGA
87314155 AAAGATGAAAAAT
1 AAAGATGAAAAAT
87314168 AAAGATGAAAAAT
1 AAAGATGAAAAAT
87314181 AA
1 AA
87314183 TAAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:87326190 original size:68 final size:66
Alignment explanation
Indices: 87326118--87326289 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
87326108 CATCATGTGT
* * * *
87326118 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
87326181 TGTAG
62 TGTAG
** * *
87326186 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
87326251 AG
65 AG
* * * *
87326253 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
87326290 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:87326223 original size:64 final size:64
Alignment explanation
Indices: 87326142--87326325 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
87326132 AGACATTATG
* * *
87326142 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
87326206 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
87326271 AA
63 AA
* * *
87326273 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
87326326 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87329949 original size:32 final size:32
Alignment explanation
Indices: 87329911--87329976 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
87329901 TTTAAAAGAG
87329911 ACATCAAATTATTCTAAAGATTTATTCGGGAT
1 ACATCAAATTATTCTAAAGATTTATTCGGGAT
*
87329943 ACATCAAATTATTCTAGAGATTTATTCGGGAT
1 ACATCAAATTATTCTAAAGATTTATTCGGGAT
87329975 AC
1 AC
87329977 GCAATGTCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (32 bp):
ACATCAAATTATTCTAAAGATTTATTCGGGAT
Found at i:87331655 original size:21 final size:22
Alignment explanation
Indices: 87331627--87331673 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
87331617 TGGTAATTGT
87331627 TTGTTATTCAAA-A-GCAAAGC
1 TTGTTATTCAAATATGCAAAGC
* *
87331647 TTGTGTATTGAAATATTCAAAGC
1 TTGT-TATTCAAATATGCAAAGC
87331670 TTGT
1 TTGT
87331674 ACATAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 7 0.32
22 1 0.05
23 10 0.45
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (22 bp):
TTGTTATTCAAATATGCAAAGC
Found at i:87332585 original size:16 final size:16
Alignment explanation
Indices: 87332564--87332598 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
87332554 TCTTTAAAGA
87332564 TAAAATATGCCTTTAT
1 TAAAATATGCCTTTAT
87332580 TAAAATATGCCTTTAT
1 TAAAATATGCCTTTAT
87332596 TAA
1 TAA
87332599 TAGCATGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (16 bp):
TAAAATATGCCTTTAT
Found at i:87333445 original size:25 final size:27
Alignment explanation
Indices: 87333397--87333446 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
87333387 CGCTATTATG
*
87333397 GGTTGAATGATCGATTATGCATAATAT
1 GGTTGAATGATCGATTATGAATAATAT
87333424 GGTTGAAT-AT-GATTATGAATAAT
1 GGTTGAATGATCGATTATGAATAAT
87333447 GCATGATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.55
26 2 0.09
27 8 0.36
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTTGAATGATCGATTATGAATAATAT
Found at i:87333607 original size:48 final size:48
Alignment explanation
Indices: 87333522--87333893 Score: 464
Period size: 48 Copynumber: 7.8 Consensus size: 48
87333512 GACATTTAGG
* * * * * *
87333522 TGATATGTGTGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCAA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* *
87333570 TG-TAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT
1 TGAT-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
87333618 TGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGTAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* *
87333666 TGATATGTA-CGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
1 TGATATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
87333714 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCA-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT
* *
87333762 T-ATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
1 TGA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
87333810 TGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* *
87333858 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACA
87333894 CGGTGTCGTA
Statistics
Matches: 284, Mismatches: 32, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
47 4 0.01
48 276 0.97
49 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:87333686 original size:96 final size:97
Alignment explanation
Indices: 87333522--87333952 Score: 491
Period size: 96 Copynumber: 4.5 Consensus size: 97
87333512 GACATTTAGG
* * * *
87333522 TGATATGTGTGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCAATG-TAATGAGAGCCAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATGAGAGCCAGT
*
87333586 GTAAGACCATGTCTGGGACATGGCATTGGCAT
66 GTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
87333618 TGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGTATTGAT-ATGTA-CGCTAG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATG-AGAGCCAG
*
87333681 TGTAAGACCATGTCTGGGACATGGCATCAGCAT
65 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
87333714 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCA-T-ATTATGAGAGCCAG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGATAATGAGAGCCAG
*
87333777 TGTAAGACCATGTCTAGGACATGGCATCGGCAT
65 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * * *
87333810 TGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGA-GACGAGAGCTAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATGAGAGCCAGT
* ** *
87333874 GTAAGACCATGTCTGGGACACGGTGTC-GTACT
66 GTAAGACCATGTCTGGGACATGGCATCGGCA-T
** * * *
87333906 CAACATGTGAGCCAGTGTAAGACCATGT-TTGGATCATGGCATCGGCA
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGA-CATGGCATCGGCA
87333953 ATTCACCCTC
Statistics
Matches: 285, Mismatches: 41, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
95 11 0.04
96 270 0.95
97 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (97 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATGAGAGCCAGT
GTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:87333918 original size:144 final size:141
Alignment explanation
Indices: 87333532--87333952 Score: 472
Period size: 144 Copynumber: 2.9 Consensus size: 141
87333522 TGATATGTGT
* * * * *
87333532 GCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTG-AATGAGAGCTAGTGTAAGACCATG
* ** * *
87333597 TCTGGGACATGGCATT-GGCATTGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATC
65 TCTGGGACATGG--TTCGAC-TCAATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
* * * *
87333661 GGTATTGATATGTAC
127 GGCATTGAGACGTAA
* * *
87333676 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGA-ATGAGAGCTAGTGTAAGACCATG
** * *
87333741 TCTGGGACATGACATCGGC-CATATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
65 TCTGGGACATG-GTTCGACTCA-A-TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
87333805 GGCATTGAGACG-AGA
127 GGCATTGAGACGTA-A
*
87333820 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGA-ATGAGAGCTAGTGTAAGACCATG
* * *
87333885 TCTGGGACACGGTGTCGTACTCAACATGTGAGCCAGTGTAAGACCATGT-TTGGATCATGGCATC
65 TCTGGGACATGGT-TCG-ACTCAATATGTGAGCCAGTGTAAGACCATGTCTAGGA-CATGGCATC
87333949 GGCA
127 GGCA
87333953 ATTCACCCTC
Statistics
Matches: 236, Mismatches: 31, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
143 8 0.03
144 224 0.95
145 2 0.01
146 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (141 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGTTCGACTCAATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
TTGAGACGTAA
Found at i:87339143 original size:48 final size:48
Alignment explanation
Indices: 87339072--87339401 Score: 270
Period size: 48 Copynumber: 6.9 Consensus size: 48
87339062 CATTTGGGTG
* *
87339072 ATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * * * * *
87339120 ATATGTGCGCCAGTGTAAGACCATGTTTCAGG-CATGGCATTGACATTG
1 ATATGTGAGCTAGTGTAAGACCATGTTT-GGGACATGGCATCGGCATTA
* * * * * * *** * *
87339168 ATATGTGCGCCAATGTAAGGCCATGTCTGGGATATGGCATTATCACTG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * * *
87339216 ATATGTGTGCTACTGTAAGACCTTGTTTGGGACATGGCATCGGCCA-CA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTA
* * * * *
87339264 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * * * * * * *
87339312 AGATGAGAGCTACTGTAAGAACATGTCTGGGACATGGCATCGTCCTCA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* *
87339360 ACATGTGAGCCAGTGTAAGACCATGTTT-GGATCATGGCATCG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGA-CATGGCATCG
87339402 ACAATTCACC
Statistics
Matches: 226, Mismatches: 51, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
47 7 0.03
48 215 0.95
49 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
Found at i:87339330 original size:144 final size:144
Alignment explanation
Indices: 87339070--87339401 Score: 350
Period size: 144 Copynumber: 2.3 Consensus size: 144
87339060 GACATTTGGG
* * * * *
87339070 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTAATATGTGCGCCAGTG
1 TGATATGTGTGCTACTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCCAGTG
* * * * * **
87339135 TAAGACCATGTTTCAGGCATGGCATTGACATTGATATGTGCGCCAATGTAAGGCCATGTCTGGGA
66 TAAGACCATGTCTCAGGCATGGCATAGACATTGAGATGAGAGCCAATGTAAGAACATGTCTGGGA
*
87339200 TATGGCATTATCAC
131 CATGGCATTATCAC
* * *
87339214 TGATATGTGTGCTACTGTAAGACCTTGTTTGGGACATGGCATCGGCCA-CATTATGAGAGCTAGT
1 TGATATGTGTGCTACTGTAAGACCATGTTTGGGACATGGCATCGG-CATCAATATGAGAGCCAGT
* * *
87339278 GTAAGACCATGTCT-GGGACATGGCATCAG-CATTGAGATGAGAGCTACTGTAAGAACATGTCTG
65 GTAAGACCATGTCTCAGG-CATGGCAT-AGACATTGAGATGAGAGCCAATGTAAGAACATGTCTG
**
87339341 GGACATGGCATCGTC-C
128 GGACATGGCATTATCAC
* * * * *
87339357 TCAACATGTGAGCCAGTGTAAGACCATGTTT-GGATCATGGCATCG
1 T-GATATGTGTGCTACTGTAAGACCATGTTTGGGA-CATGGCATCG
87339402 ACAATTCACC
Statistics
Matches: 156, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
143 7 0.04
144 147 0.94
145 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (144 bp):
TGATATGTGTGCTACTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCCAGTG
TAAGACCATGTCTCAGGCATGGCATAGACATTGAGATGAGAGCCAATGTAAGAACATGTCTGGGA
CATGGCATTATCAC
Found at i:87347773 original size:15 final size:15
Alignment explanation
Indices: 87347753--87347821 Score: 102
Period size: 15 Copynumber: 4.6 Consensus size: 15
87347743 ATATTGTATT
*
87347753 TTGGATTTCTATATC
1 TTGGATTTCTTTATC
87347768 TTGGATTTCTTTATC
1 TTGGATTTCTTTATC
*
87347783 TTGGATTTCTTTGTC
1 TTGGATTTCTTTATC
*
87347798 TTGGACTTCTTTATC
1 TTGGATTTCTTTATC
*
87347813 TTGGTTTTC
1 TTGGATTTC
87347822 ATGTCATCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:87350647 original size:44 final size:44
Alignment explanation
Indices: 87350584--87350723 Score: 154
Period size: 52 Copynumber: 3.0 Consensus size: 44
87350574 TATGTATGAG
* * *
87350584 GCATCCGAACTCGTTGAGTTGGTCCGATTTCATTATGGATGCGA
1 GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
* *
87350628 GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATTCGACACATGT
1 GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGA-T-G---C--GA
*
87350679 GACATCCGAGTTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
1 G-CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
87350724 TACATGTAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 15
0.78 0.08 0.15
Matches are distributed among these distances:
44 35 0.44
45 2 0.03
46 1 0.01
47 1 0.01
49 1 0.01
50 1 0.01
51 3 0.04
52 36 0.45
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.32
Consensus pattern (44 bp):
GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
Found at i:87350694 original size:52 final size:52
Alignment explanation
Indices: 87350629--87350730 Score: 168
Period size: 52 Copynumber: 2.0 Consensus size: 52
87350619 TGGATGCGAG
*
87350629 CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATTCGACACATGTGA
1 CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATGCGACACATGTGA
* * *
87350681 CATCCGAGTTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGATACATGT
1 CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATGCGACACATGT
87350731 AATTGGGTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (52 bp):
CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATGCGACACATGTGA
Found at i:87358395 original size:41 final size:41
Alignment explanation
Indices: 87358336--87358506 Score: 189
Period size: 41 Copynumber: 4.2 Consensus size: 41
87358326 AGAATAATGA
* * * *
87358336 TGAATTGCACAAACGTGCCCCTATTTGTATTTCAGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * * **
87358377 TGAATTACACATATGTGCCCCTATTTGCACTTCGATACTAC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * *
87358418 TGAATCGCACATATGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * * * *
87358459 TAAATTGCATAGATGTGCTCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
87358500 TGAATTG
1 TGAATTG
87358507 TAATATCCCG
Statistics
Matches: 106, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 106 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:87366083 original size:40 final size:40
Alignment explanation
Indices: 87366029--87366336 Score: 197
Period size: 40 Copynumber: 7.4 Consensus size: 40
87366019 ATTGAGAGTT
*
87366029 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
* * *
87366069 TTATATCCGGGCTAAGTCCTGAAAAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
* *
87366109 ATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT-A
** * * * * * * ** * * * *
87366150 GA-AT-TGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
1 -ATATATCCGGGCTA-A-GTCC---CGAAG---AGCA-TTCGTGC-TGGTA
* * * *
87366199 GTGTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
1 AT-ATAT-CCGG-GCTAAGTCCCGAAGAGCATTCGTGCTGGTA
* * * *
87366242 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGGTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
* *
87366282 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
87366322 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
87366337 NNNNNNNNNN
Statistics
Matches: 201, Mismatches: 50, Indels: 34
0.71 0.18 0.12
Matches are distributed among these distances:
40 155 0.77
41 5 0.02
42 7 0.03
43 4 0.02
44 3 0.01
45 6 0.03
48 6 0.03
49 4 0.02
50 3 0.01
51 4 0.02
52 1 0.00
53 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
Found at i:87366254 original size:133 final size:133
Alignment explanation
Indices: 87366014--87366336 Score: 492
Period size: 133 Copynumber: 2.5 Consensus size: 133
87366004 GTATTGTACA
87366014 TGAGAATTGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
1 TGAGAATTGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
*
87366079 GCTAAGTCCTGAAAAGCATTCGTGCTGGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCATGC
66 GCTAAGTCCCGAAAAGCATTCGTGCTGGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCATGC
87366144 TAG
131 TAG
*
87366147 TGAGAATTGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGG
1 TGAGAATTGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
* *
87366212 GCTAAGTCCCGAAGAGCATTCGTGCTGGTAATATATCTGGGCTAAGTCCCGAAGAGCA-T--T-C
66 GCTAAGTCCCGAAAAGCATTCGTGCTGGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCATGC
87366273 --G
131 TAG
* * *
87366274 TG-G---T---AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGG
1 TGAGAATTGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
87366332 GCTAA
66 GCTAA
87366337 NNNNNNNNNN
Statistics
Matches: 182, Mismatches: 8, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
120 55 0.30
123 1 0.01
126 1 0.01
127 3 0.02
129 1 0.01
130 1 0.01
132 1 0.01
133 119 0.65
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (133 bp):
TGAGAATTGAGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
GCTAAGTCCCGAAAAGCATTCGTGCTGGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCATGC
TAG
Found at i:87366295 original size:80 final size:80
Alignment explanation
Indices: 87366162--87366336 Score: 287
Period size: 80 Copynumber: 2.2 Consensus size: 80
87366152 ATTGAGAGTT
* * *
87366162 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
*
87366227 GCATTCGTGCTGGTA
66 GCATTCGTGCTAGTA
* *
87366242 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGGTAGTGATATATCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
*
87366307 GCATTCGTGCTAGTG
66 GCATTCGTGCTAGTA
87366322 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
87366337 NNNNNNNNNN
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
GCATTCGTGCTAGTA
Found at i:87370608 original size:30 final size:31
Alignment explanation
Indices: 87370497--87370610 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
87370487 TTAGTCTTGA
*
87370497 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
87370527 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
87370558 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
87370589 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
87370611 ATTGTAAGCC
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
30 17 0.21
31 64 0.79
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:87370668 original size:42 final size:42
Alignment explanation
Indices: 87370620--87370710 Score: 173
Period size: 42 Copynumber: 2.2 Consensus size: 42
87370610 TATTGTAAGC
*
87370620 CCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAG
1 CCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAG
87370662 CCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAG
1 CCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAG
87370704 CCCATTT
1 CCCATTT
87370711 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
CCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAG
Found at i:87370927 original size:25 final size:25
Alignment explanation
Indices: 87370858--87370927 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
87370848 CTCTTTTAAT
*
87370858 AACTGGGGCAAAGCCCTTTCCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
87370883 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
87370908 AACTGGGGCAGAGCCATTTT
1 AACTGGGGCAAAGCCCTTTT
87370928 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:87371782 original size:27 final size:27
Alignment explanation
Indices: 87371742--87371814 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
87371732 TATTCGTCAT
* *
87371742 TTTACCATACAGGGGTATTACGGCCAC
1 TTTACCCTATAGGGGTATTACGGCCAC
* **
87371769 TTTACCCTATAGGGGCT-TTACGGTCTT
1 TTTACCCTATAGGGG-TATTACGGCCAC
87371796 TTTA-CCTATTAGGGGTATT
1 TTTACCCTA-TAGGGGTATT
87371815 TTACTCATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.13
27 32 0.84
28 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTACGGCCAC
Found at i:87371893 original size:26 final size:26
Alignment explanation
Indices: 87371855--87371904 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
87371845 GTAAATCTAC
*
87371855 AAACCAAGGGTATTTC-AGTAATTTGT
1 AAACCAAGAGTATTTCTA-TAATTTGT
*
87371881 AAACCAATAGTATTTCTATAATTT
1 AAACCAAGAGTATTTCTATAATTT
87371905 TTAGAAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
AAACCAAGAGTATTTCTATAATTTGT
Found at i:87371949 original size:55 final size:54
Alignment explanation
Indices: 87371852--87371986 Score: 141
Period size: 55 Copynumber: 2.5 Consensus size: 54
87371842 TTGGTAAATC
* *
87371852 TACAAACCAAGGGTATTTCAGTAA-TTTGTAAACCAATAGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTT-TGATAA-TTT
* * * * *
87371906 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATC-AGGGTATTTTGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTTGATAATTT
* *
87371960 TACAAATTAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
87371987 CACAAACTAG
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
53 19 0.28
54 14 0.21
55 26 0.38
56 9 0.13
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTTGATAATTT
Found at i:87371982 original size:27 final size:27
Alignment explanation
Indices: 87371915--87372036 Score: 135
Period size: 26 Copynumber: 4.6 Consensus size: 27
87371905 TTAGAAAGTC
**
87371915 AAGGGTATTTCT-GTAATTTTGTAAA-T
1 AAGGGTATTT-TGGTAATTTTACAAACT
* *
87371941 CAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
87371968 AAGGGTATTTCGGTAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
87371995 -AGTGGTATTTTGGTAA-TTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
87372021 AGGGGTATTTTGGTAA
1 AAGGGTATTTTGGTAA
87372037 CTCTACACTA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.01
26 44 0.54
27 37 0.45
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:87372054 original size:27 final size:26
Alignment explanation
Indices: 87371944--87372057 Score: 97
Period size: 27 Copynumber: 4.3 Consensus size: 26
87371934 TGTAAATCAG
* *
87371944 GGTATTTTGGTAATTTTACAAATTA-A
1 GGTATTTTGGTAA-TCTACAAACTAGA
* * *
87371970 GGGTATTTCGGTAATTTCACAAACTAGT
1 -GGTATTTTGGTAATCT-ACAAACTAGA
* *
87371998 GGTATTTTGGTAATTTACAAACTAGG
1 GGTATTTTGGTAATCTACAAACTAGA
*
87372024 GGTATTTTGGTAACTCTACACTA-TAGA
1 GGTATTTTGGTAA-TCTACA-AACTAGA
87372051 GGTATTT
1 GGTATTT
87372058 CAGTAATTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 25 0.33
27 49 0.65
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
GGTATTTTGGTAATCTACAAACTAGA
Found at i:87372055 original size:53 final size:53
Alignment explanation
Indices: 87371944--87372071 Score: 134
Period size: 53 Copynumber: 2.4 Consensus size: 53
87371934 TGTAAATCAG
* * *
87371944 GGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGT
1 GGTATTTTGGTAA-TTTACAAACTAAGGGTATTTCGGTAATTACACAAACTAGA
* * *
87371998 GGTATTTTGGTAATTTACAAACTAGGGGTATTTTGGTAACTCTACAC-TA-TAGA
1 GGTATTTTGGTAATTTACAAACTAAGGGTATTTCGGTAA-T-TACACAAACTAGA
**
87372051 GGTATTTCAGTAATTTCACAA
1 GGTATTTTGGTAATTT-ACAA
87372072 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
53 40 0.63
54 19 0.30
55 4 0.06
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
GGTATTTTGGTAATTTACAAACTAAGGGTATTTCGGTAATTACACAAACTAGA
Found at i:87372088 original size:26 final size:27
Alignment explanation
Indices: 87372058--87372134 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
87372048 AGAGGTATTT
*
87372058 CAGTAATT-T-CACAATCGAGGGTAAAA
1 CAGTAATTCTGCA-AATCAAGGGTAAAA
* *
87372084 TAGTAATTCTGTAAATCAAGGGTAAAA
1 CAGTAATTCTGCAAATCAAGGGTAAAA
** *
87372111 CAGTAATTCTATAAATCGAGGGTA
1 CAGTAATTCTGCAAATCAAGGGTA
87372135 CTTTGGCAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
26 7 0.16
27 35 0.81
28 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (27 bp):
CAGTAATTCTGCAAATCAAGGGTAAAA
Found at i:87372106 original size:27 final size:27
Alignment explanation
Indices: 87372070--87372134 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
87372060 GTAATTTCAC
* *
87372070 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
87372097 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
87372124 AATCGAGGGTA
1 AATCGAGGGTA
87372135 CTTTGGCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:87391186 original size:14 final size:15
Alignment explanation
Indices: 87391167--87391196 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
87391157 ATATTTGACT
87391167 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
87391181 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
87391196 T
1 T
87391197 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:87416009 original size:32 final size:32
Alignment explanation
Indices: 87415927--87415999 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
87415917 AAATTGAAAA
* * *
87415927 GGGCTAGGCCCAACTGATATTGGTTCTGATAT
1 GGGCTAGGCCCAACTGATATTGATTCTAAGAT
87415959 GGGCTAGGCCCAACTGATATTGATTCTAAGAT
1 GGGCTAGGCCCAACTGATATTGATTCTAAGAT
*
87415991 GGGTTAGGC
1 GGGCTAGGC
87416000 TTAATTGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (32 bp):
GGGCTAGGCCCAACTGATATTGATTCTAAGAT
Found at i:87424342 original size:41 final size:40
Alignment explanation
Indices: 87424290--87424489 Score: 204
Period size: 41 Copynumber: 4.9 Consensus size: 40
87424280 GTACATTTAG
* *
87424290 GGGTACCGAAGTACAAACTA-GGGCACGTTTGTGCAATTTA
1 GGGTACCGAAGTACAAA-TAGGGGCACGTATGTGCAATTAA
* * ** *
87424330 GTGGTACTGAAGTAAAAATAGGGGCACAAATGTGCAATTCAG
1 G-GGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT-AA
* * * *
87424372 GGGTACCGAAGTACAAACACGGGCATGTCTGTGCAATTCAA
1 GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT-AA
* * * *
87424413 GGGTACCGAAATACAAATAGAGGCACATATGTACAATTCAA
1 GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT-AA
*
87424454 GGGTACCGAAGTACAAATAGGGGCACGTATCTGCAA
1 GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAA
87424490 CTTATCATTT
Statistics
Matches: 128, Mismatches: 29, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
40 3 0.02
41 124 0.97
42 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.20
Consensus pattern (40 bp):
GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATTAA
Found at i:87424386 original size:82 final size:83
Alignment explanation
Indices: 87424275--87424481 Score: 255
Period size: 82 Copynumber: 2.6 Consensus size: 83
87424265 TAGACAGAGT
* * *
87424275 ACAAA-GTAC-ATTTAGGGGTACCGAAGTACAAACTA-GGGCACGTTTGTGCAATT-TAGTGGTA
1 ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGTCTGTGCAATTCAAG-GGTA
* * *
87424336 CTGAAGTAAAAATAGGGGC
65 CCGAAATAAAAATAGAGGC
* *
87424355 ACAAATGTGCAATTCAGGGGTACCGAAGTACAAAC-ACGGGCATGTCTGTGCAATTCAAGGGTAC
1 ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGTCTGTGCAATTCAAGGGTAC
*
87424419 CGAAATACAAATAGAGGC
66 CGAAATAAAAATAGAGGC
* * *
87424437 ACATATGTACAATTCAAGGGTACCGAAGTACAAA-TAGGGGCACGT
1 ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGT
87424482 ATCTGCAACT
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.05
81 4 0.04
82 97 0.90
83 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (83 bp):
ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGTCTGTGCAATTCAAGGGTAC
CGAAATAAAAATAGAGGC
Found at i:87426384 original size:68 final size:67
Alignment explanation
Indices: 87426312--87426461 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
87426302 CATCATGTGT
* * * *
87426312 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
87426374 ATGTAG
62 ATGTAG
** * *
87426380 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
87426445 AG
66 AG
87426447 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
87426462 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:87426417 original size:64 final size:64
Alignment explanation
Indices: 87426336--87426519 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
87426326 AGACATTATG
* *
87426336 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
87426400 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
87426465 AA
63 AA
* * * *
87426467 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
87426520 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87435005 original size:27 final size:27
Alignment explanation
Indices: 87434955--87435318 Score: 253
Period size: 27 Copynumber: 13.6 Consensus size: 27
87434945 TTAATTTACC
* *
87434955 AAATTACCAAAATAACC-CCGATTTATA
1 AAATTACCAAAAT-ACCATCGATTTGTA
* *
87434982 AAATTACCCAAATATCC-TCAATTTGTA
1 AAATTACCAAAATA-CCATCGATTTGTA
** *
87435009 AAATTACTGACATACCATCGA-TTGTA
1 AAATTACCAAAATACCATCGATTTGTA
** *
87435035 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCATCGATTTGTA
*
87435062 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCAAAATACCATCGATTTGTA
* *
87435088 AAATTACTAAAATACCTTCGATTTGTA
1 AAATTACCAAAATACCATCGATTTGTA
* * * *
87435115 AAATTACCAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCATCGATTTGTA
* * *
87435142 AAGTTACCAAAATACC-CCTGGTTTGTA
1 AAATTACCAAAATACCATC-GATTTGTA
* * * **
87435169 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCATCGATTTGTA
* * *
87435196 AAATTACCAAAATGCC-CCTGGTTTGTA
1 AAATTACCAAAATACCATC-GATTTGTA
* * *
87435223 AAATTACCAAAATACCCT-TAGTT-TA
1 AAATTACCAAAATACCATCGATTTGTA
* * *
87435248 CAAAGTTACCAAAATACC-CCTAGTTTGTT
1 -AAA-TTACCAAAATACCATCGA-TTTGTA
* *
87435277 AAATTACCAAAATACCATTGCTTTG-A
1 AAATTACCAAAATACCATCGATTTGTA
* *
87435303 AAAATACTAAAATACC
1 AAATTACCAAAATACC
87435319 CCTGTGGGGT
Statistics
Matches: 275, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.01
26 69 0.25
27 198 0.72
28 5 0.02
29 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCATCGATTTGTA
Found at i:87435175 original size:54 final size:52
Alignment explanation
Indices: 87435003--87435322 Score: 311
Period size: 54 Copynumber: 6.0 Consensus size: 52
87434993 ATATCCTCAA
** * * * ** *
87435003 TTTGTAAAATTACTGACATACCATCGATTGTAAAATTACTGAAATA-CCCTCGA
1 TTTGTAAAATTACCAAAATACCATTGGTT-TAAAATTACCAAAATACCCCT-GG
* * * * * *
87435056 TTTGTAAAATTACCGAAATACCATCGATTGTAAAATTACTAAAATA-CCTTCGA
1 TTTGTAAAATTACCAAAATACCATTGGTT-TAAAATTACCAAAATACCCCT-GG
*
87435109 TTTGTAAAATTACCAAAATACCTTTGGTTTATAAAGTTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCATTGGTTTA-AAA-TTACCAAAATACCCCTGG
* *
87435163 TTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATGCCCCTGG
1 TTTGTAAAATTACCAAAATACCATTGGTTT--AAAATTACCAAAATACCCCTGG
* * *
87435217 TTTGTAAAATTACCAAAATACCCTTAGTTTACAAAGTTACCAAAATACCCCTAG
1 TTTGTAAAATTACCAAAATACCATTGGTTTA-AAA-TTACCAAAATACCCCTGG
* * * *
87435271 TTTGTTAAATTACCAAAATACCATTGCTTTGAAAAATACTAAAATACCCCTG
1 TTTGTAAAATTACCAAAATACCATTGGTTT-AAAATTACCAAAATACCCCTG
87435323 TGGGGTAGAA
Statistics
Matches: 236, Mismatches: 23, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
52 3 0.01
53 94 0.40
54 131 0.56
55 7 0.03
56 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (52 bp):
TTTGTAAAATTACCAAAATACCATTGGTTTAAAATTACCAAAATACCCCTGG
Done.