Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 265 of 310
Found at i:87435350 original size:27 final size:27
Alignment explanation
Indices: 87435312--87435420 Score: 173
Period size: 27 Copynumber: 4.0 Consensus size: 27
87435302 AAAAATACTA
*
87435312 AAATACCCCTGTGGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
87435339 AAATACCCCTGTAGGGTAGAATCACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
87435366 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
87435393 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
87435420 A
1 A
87435421 GACTTGGACT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:87435647 original size:24 final size:25
Alignment explanation
Indices: 87435587--87435640 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
87435577 GCTATGCTCT
* *
87435587 AGTTTACCGAAAAGGGCTTTGCCCC
1 AGTTTATCAAAAAGGGCTTTGCCCC
* *
87435612 AGTTTATCAAAAAGGGTTTTGCCCT
1 AGTTTATCAAAAAGGGCTTTGCCCC
87435637 AGTT
1 AGTT
87435641 ATTAAAAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (25 bp):
AGTTTATCAAAAAGGGCTTTGCCCC
Found at i:87445442 original size:114 final size:114
Alignment explanation
Indices: 87445239--87445465 Score: 436
Period size: 114 Copynumber: 2.0 Consensus size: 114
87445229 TAGGTCTGTT
87445239 ACAACTCTCCCCCACTTAAAAATTTTCGTCACCGAAAATCTTACCAGCGAATAAATTCGGATAAC
1 ACAACTCTCCCCCACTTAAAAATTTTCGTCACCGAAAATCTTACCAGCGAATAAATTCGGATAAC
87445304 GTTCTTTCATAGATTCTTCAAGCTCCCAAGTAGCTTCTTCAACCCCATC
66 GTTCTTTCATAGATTCTTCAAGCTCCCAAGTAGCTTCTTCAACCCCATC
*
87445353 ACAACTCTCCCCCACTTAAAAATTTTCGTCCCCGAAAATCTTACCAGCGAATAAATTCGGATAAC
1 ACAACTCTCCCCCACTTAAAAATTTTCGTCACCGAAAATCTTACCAGCGAATAAATTCGGATAAC
*
87445418 GTTCTTTCATAGATTCTTCGAGCTCCCAAGTAGCTTCTTCAACCCCAT
66 GTTCTTTCATAGATTCTTCAAGCTCCCAAGTAGCTTCTTCAACCCCAT
87445466 GCTTAAGCCA
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 111 1.00
ACGTcount: A:0.30, C:0.31, G:0.10, T:0.29
Consensus pattern (114 bp):
ACAACTCTCCCCCACTTAAAAATTTTCGTCACCGAAAATCTTACCAGCGAATAAATTCGGATAAC
GTTCTTTCATAGATTCTTCAAGCTCCCAAGTAGCTTCTTCAACCCCATC
Found at i:87448825 original size:28 final size:28
Alignment explanation
Indices: 87448788--87448953 Score: 278
Period size: 28 Copynumber: 5.9 Consensus size: 28
87448778 GCAATCAAAT
*
87448788 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
87448816 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
87448844 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
87448872 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
87448900 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
87448928 ATGACACTTAGTGTGCAAAATATTGA
1 ATGGCACTTAGTGTACGAAATATTGA
87448954 ATGATTCAAA
Statistics
Matches: 132, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 132 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:87463117 original size:50 final size:49
Alignment explanation
Indices: 87462999--87463120 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 49
87462989 GGTATAATTC
* * *
87462999 CGATGCCATGTTCCAAACATGGTCTTACACTAACTATCGAAATCAAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCAACGT
* * * *
87463048 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACAT-ATACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCA-ACGT
87463096 GCTGATGCCATGTCCCAGACATGGT
1 -C-GATGCCATGTCCCAGACATGGT
87463121 TTTATACTGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
47 1 0.02
48 6 0.10
49 34 0.55
50 21 0.34
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCAACGT
Found at i:87463214 original size:46 final size:46
Alignment explanation
Indices: 87463164--87463312 Score: 122
Period size: 46 Copynumber: 3.2 Consensus size: 46
87463154 CCCAGAGACA
87463164 TCTTACACTGGCT-TACATCTTGAGGCCGATGCACATTCCAGACATG
1 TCTTACACTGGCTCT-CATCTTGAGGCCGATGCACATTCCAGACATG
* * ** * *
87463210 TCTTACGCTAGCTCTCATCTCAATGTCGATGC-CATGTTCCAGACATGG
1 TCTTACACTGGCTCTCATCTTGAGGCCGATGCACA--TTCCAGACAT-G
* * ** * ** *
87463258 CCTTACTCTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATG
1 TCTTACACTGGCTCTCATCTTGAGGCCGATGCACATTCCAGACATG
87463304 TCTTACACT
1 TCTTACACT
87463313 AGCACACAAA
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
45 2 0.03
46 32 0.42
47 20 0.26
48 23 0.30
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (46 bp):
TCTTACACTGGCTCTCATCTTGAGGCCGATGCACATTCCAGACATG
Found at i:87464032 original size:13 final size:13
Alignment explanation
Indices: 87464014--87464038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87464004 TAAAAGTGCA
87464014 AAAATCATCAAAG
1 AAAATCATCAAAG
87464027 AAAATCATCAAA
1 AAAATCATCAAA
87464039 ATCACTTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATCATCAAAG
Found at i:87474349 original size:47 final size:47
Alignment explanation
Indices: 87474274--87474592 Score: 487
Period size: 47 Copynumber: 6.7 Consensus size: 47
87474264 TTCGGGACTT
* * * * * *
87474274 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
87474320 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 -ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
87474368 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
87474415 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
87474462 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
87474509 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTACGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
87474558 ATCATATATATATACACTTTCACATTCATCACATC
1 ATC--ACATATATACACTTTCACATTCATCACATC
87474593 ATGTACAGAC
Statistics
Matches: 256, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 180 0.70
48 3 0.01
49 72 0.28
51 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
Found at i:87483772 original size:55 final size:55
Alignment explanation
Indices: 87483711--87483831 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
87483701 CTGCCAAAAC
* * ** *
87483711 AACACGGGTGTGCAACACGCCCATGCCCTGAAACCGTGGCCAAACCTATCAAATT
1 AACACGGGCGTGCAACACGCCCATACCAAGAAACCGTAGCCAAACCTATCAAATT
* * * * * * *
87483766 AACACGGGCGTGCGACACTCCCGTACCAAGAAACCGTAGTCAAACCTGTTAGATT
1 AACACGGGCGTGCAACACGCCCATACCAAGAAACCGTAGCCAAACCTATCAAATT
87483821 AACACGGGCGT
1 AACACGGGCGT
87483832 AGGACTACAT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.31, C:0.31, G:0.22, T:0.17
Consensus pattern (55 bp):
AACACGGGCGTGCAACACGCCCATACCAAGAAACCGTAGCCAAACCTATCAAATT
Found at i:87485737 original size:11 final size:11
Alignment explanation
Indices: 87485721--87485756 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
87485711 CATTGATAAT
87485721 TTTTAATTTTA
1 TTTTAATTTTA
87485732 TTTTAATTTTAA
1 TTTTAATTTT-A
87485744 TTTTAATTTTA
1 TTTTAATTTTA
87485755 TT
1 TT
87485757 AATTTCACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTAATTTTA
Found at i:87485740 original size:6 final size:6
Alignment explanation
Indices: 87485721--87485754 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
87485711 CATTGATAAT
87485721 TTTTAA TTTT-A TTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
87485755 TTAATTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:87485740 original size:18 final size:18
Alignment explanation
Indices: 87485721--87485754 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
87485711 CATTGATAAT
87485721 TTTTAATTTT-ATTTTAA
1 TTTTAATTTTAATTTTAA
87485738 TTTTAATTTTAATTTTA
1 TTTTAATTTTAATTTTA
87485755 TTAATTTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTAATTTTAATTTTAA
Found at i:87492181 original size:38 final size:38
Alignment explanation
Indices: 87492130--87492205 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
87492120 TTCAGGATTG
87492130 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
1 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
* *
87492168 TTAAGCAAAACCATATCTCTTACTAATATTGTTACTAC
1 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
87492206 ATTTTGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (38 bp):
TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
Found at i:87492608 original size:33 final size:34
Alignment explanation
Indices: 87492566--87492659 Score: 88
Period size: 33 Copynumber: 2.8 Consensus size: 34
87492556 GCACAACTGG
* *
87492566 GCCTAAGCCCATATCAGTCGT-AATATCAGTGT-A
1 GCCTTAGCCCATATCAGT-ATCAATATCAGTGTGA
* *
87492599 GCCTTAGCCCA-ATACAGTATCAGTATCAGTGTGG
1 GCCTTAGCCCATAT-CAGTATCAATATCAGTGTGA
* *
87492633 GCGTTAGCCCATATCAGTA-CAGTATCA
1 GCCTTAGCCCATATCAGTATCAATATCA
87492660 TAAATGCCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
32 3 0.06
33 32 0.62
34 15 0.29
35 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (34 bp):
GCCTTAGCCCATATCAGTATCAATATCAGTGTGA
Found at i:87493357 original size:38 final size:38
Alignment explanation
Indices: 87493306--87493381 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
87493296 TTCAGGATTG
87493306 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
1 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
* *
87493344 TTAAGCAAAACCATATCTCTTACTAATATTGTTACTAC
1 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
87493382 ATTTTGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (38 bp):
TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
Found at i:87493784 original size:33 final size:34
Alignment explanation
Indices: 87493742--87493835 Score: 88
Period size: 33 Copynumber: 2.8 Consensus size: 34
87493732 GCACAACTGG
* *
87493742 GCCTAAGCCCATATCAGTCGT-AATATCAGTGT-A
1 GCCTTAGCCCATATCAGT-ATCAATATCAGTGTGA
* *
87493775 GCCTTAGCCCA-ATACAGTATCAGTATCAGTGTGG
1 GCCTTAGCCCATAT-CAGTATCAATATCAGTGTGA
* *
87493809 GCGTTAGCCCATATCAGTA-CAGTATCA
1 GCCTTAGCCCATATCAGTATCAATATCA
87493836 TAAATGCCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
32 3 0.06
33 32 0.62
34 15 0.29
35 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (34 bp):
GCCTTAGCCCATATCAGTATCAATATCAGTGTGA
Found at i:87504278 original size:30 final size:30
Alignment explanation
Indices: 87504244--87504304 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
87504234 TCCTTAACTC
87504244 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
87504274 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
87504304 A
1 A
87504305 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:87509637 original size:30 final size:30
Alignment explanation
Indices: 87509603--87509662 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
87509593 ATTTAATACG
87509603 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
87509633 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
87509663 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:87523711 original size:17 final size:17
Alignment explanation
Indices: 87523685--87523724 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
87523675 GTATGAGTTA
87523685 TGTA-TGTTAAATGATG
1 TGTATTGTTAAATGATG
*
87523701 TGTATTGTTAAATGTTG
1 TGTATTGTTAAATGATG
87523718 TGTATTG
1 TGTATTG
87523725 ATTGGTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (17 bp):
TGTATTGTTAAATGATG
Found at i:87526821 original size:42 final size:42
Alignment explanation
Indices: 87526762--87526857 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
87526752 CATACAGACA
* * *
87526762 AGACACACACCCGTGTTCTAGGCCATGTAGCTCTCACGGCTG
1 AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
* *
87526804 AGACACACGCCCCTGTTCTAGGTAATGTAGCTCACACGGCTG
1 AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
87526846 AGACACACACCC
1 AGACACACACCC
87526858 ATGACTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.25, C:0.34, G:0.22, T:0.19
Consensus pattern (42 bp):
AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
Found at i:87534269 original size:27 final size:27
Alignment explanation
Indices: 87534233--87534560 Score: 363
Period size: 27 Copynumber: 12.2 Consensus size: 27
87534223 GGCCGAAATG
* * *
87534233 ATGATCGAAATACCCTTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
87534260 ATGACCGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
87534287 ATGACCGAAATACCCCCATAGTGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
87534314 ATAACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
87534341 ATGACCGAAATATCCCC-ATAGGATAAA
1 ATGACCGAAATA-CCCCTATAGGGTAAA
* *
87534368 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
87534395 ATGACTGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
87534422 ATGACCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * **
87534449 ATGACTGTAATACCCCTGCAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* ** * *
87534476 ATGACAGTGATA-CACTTTAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * *
87534502 ATGACTGTAATACCCCTGTAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * * *
87534529 ATGGCTGTAATACCCCTGTAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
87534556 ATGAC
1 ATGAC
87534561 TGATTTGCCC
Statistics
Matches: 262, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.10
27 233 0.89
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
ATGACCGAAATACCCCTATAGGGTAAA
Found at i:87547811 original size:49 final size:47
Alignment explanation
Indices: 87547707--87547883 Score: 164
Period size: 48 Copynumber: 3.7 Consensus size: 47
87547697 ATAGTACAAT
* * * *
87547707 GTCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCATATATCTAA
1 GTCGATGCCATG-TCCTAGACA-GGTCTTACACTGTCTCATATATCGAG
*
87547755 GTCGATGCCATGTCCTAGACAGGTCTTACACTGATTTTCATATATCGAG
1 GTCGATGCCATGTCCTAGACAGGTCTTACACTG--TCTCATATATCGAG
* * *
87547804 GTTGATGCCATGTCCCAGACAGG-CTTACACTGGCTCTCATCTATCG-G
1 GTCGATGCCATGTCCTAGACAGGTCTTACACT-G-TCTCATATATCGAG
* *
87547851 TGTCAATGCCATGT-CTCAGACAAGTCTTACACT
1 -GTCGATGCCATGTCCT-AGACAGGTCTTACACT
87547884 AACACATGTC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
47 17 0.16
48 51 0.47
49 40 0.37
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (47 bp):
GTCGATGCCATGTCCTAGACAGGTCTTACACTGTCTCATATATCGAG
Found at i:87547909 original size:22 final size:22
Alignment explanation
Indices: 87547884--87547925 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
87547874 GTCTTACACT
87547884 AACACATGTCAAGCTGATGCAG
1 AACACATGTCAAGCTGATGCAG
*
87547906 AACACATGTCAAGTTGATGC
1 AACACATGTCAAGCTGATGC
87547926 CATGTCCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (22 bp):
AACACATGTCAAGCTGATGCAG
Found at i:87547992 original size:48 final size:46
Alignment explanation
Indices: 87547921--87548045 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
87547911 ATGTCAAGTT
*
87547921 GATGCCATGTCCCAGACAAGTCTTACACTAGCT-TGCATATCTCAAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCT-C--ATCTCAAGGCC
* * * * *
87547970 GATGCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
87548016 GATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
87548046 TACACATATC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 36 0.54
48 26 0.39
49 5 0.07
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
Found at i:87552500 original size:43 final size:43
Alignment explanation
Indices: 87552447--87552558 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
87552437 TAGGATTATA
87552447 GTTATGTGATTACGTGTAAAACCAT-GTCTAGGAC-ATTGGCATC
1 GTTATGTGATTACGTGTAAAACCATAG-CTAGG-CTATTGGCATC
* * *
87552490 GTTATTTGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATC
1 GTTATGTGATTACGTGTAAAACCATAGCTAGGCTATTGGCATC
* * *
87552533 GATATGTGATAACATGTAAAACCATA
1 GTTATGTGATTACGTGTAAAACCATA
87552559 TCCAGGATAT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 56 0.97
44 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (43 bp):
GTTATGTGATTACGTGTAAAACCATAGCTAGGCTATTGGCATC
Found at i:87554970 original size:25 final size:25
Alignment explanation
Indices: 87554942--87554989 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
87554932 TCATATCATG
* *
87554942 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTGTTATACCCCTAGGTA
87554967 AAAATGACTGTTATACCCCTAGG
1 AAAATGACTGTTATACCCCTAGG
87554990 GTTTACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAATGACTGTTATACCCCTAGGTA
Found at i:87555051 original size:20 final size:20
Alignment explanation
Indices: 87555025--87555071 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
87555015 ATTTTGATAT
87555025 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
87555045 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
87555065 ACATGAT
1 ACATGAT
87555072 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:87555193 original size:25 final size:25
Alignment explanation
Indices: 87555121--87555217 Score: 124
Period size: 25 Copynumber: 3.8 Consensus size: 25
87555111 GAGGAAGTGC
87555121 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
*
87555147 AAAAAGGGCTGATGCCCC-GTTTATTG
1 -AAAAGGGCT-TTGCCCCAGTTTATTG
***
87555173 AAAAGGGCTTTGCCCCAGTTTACCC
1 AAAAGGGCTTTGCCCCAGTTTATTG
87555198 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
87555218 ATTAAAGAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
24 6 0.10
25 34 0.54
26 8 0.13
27 15 0.24
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:87555759 original size:17 final size:17
Alignment explanation
Indices: 87555737--87555772 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
87555727 AATAAGGCCA
87555737 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
87555754 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
87555771 TT
1 TT
87555773 CTTTTCTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAACTTTATTTTCT
Found at i:87572492 original size:25 final size:25
Alignment explanation
Indices: 87572464--87572511 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
87572454 TTATATCATG
* * *
87572464 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
87572489 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
87572512 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:87572591 original size:20 final size:21
Alignment explanation
Indices: 87572546--87572593 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
87572536 GATTTTGATT
87572546 TACATGATTGATATGATATGC
1 TACATGATTGATATGATATGC
87572567 T-CATGATATG-TATGATATG-
1 TACATGAT-TGATATGATATGC
87572586 TACATGAT
1 TACATGAT
87572594 GTATTCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (21 bp):
TACATGATTGATATGATATGC
Found at i:87572672 original size:25 final size:26
Alignment explanation
Indices: 87572643--87572766 Score: 162
Period size: 26 Copynumber: 4.8 Consensus size: 26
87572633 GAGGAAGTGC
* *
87572643 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
87572669 AAAAATGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
87572696 AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
87572722 AAAAGGGCTT-TGTCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
87572747 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
87572767 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 31 0.35
26 33 0.38
27 24 0.27
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:87572672 original size:26 final size:26
Alignment explanation
Indices: 87572643--87572778 Score: 156
Period size: 25 Copynumber: 5.3 Consensus size: 26
87572633 GAGGAAGTGC
*
87572643 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTATTG
87572669 AAAAATGGCTTATGCCCCAGTTTATTG
1 AAAAA-GGCTTATGCCCCAGTTTATTG
87572696 -AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAAGG-CTTATGCCCCAGTTTATTG
* * **
87572722 AAAAGGGCTT-TGTCCCAGTTTACCG
1 AAAAAGGCTTATGCCCCAGTTTATTG
*
87572747 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAAGGCTTATGCCCCAGTTTATTG
*
87572770 AAAGAGGCT
1 AAAAAGGCT
87572779 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
23 7 0.07
24 3 0.03
25 31 0.32
26 31 0.32
27 25 0.26
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
AAAAAGGCTTATGCCCCAGTTTATTG
Found at i:87573442 original size:17 final size:17
Alignment explanation
Indices: 87573420--87573455 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
87573410 AATAAGGCCA
87573420 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
87573437 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
87573454 TT
1 TT
87573456 CTTTTCTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAACTTTATTTTCT
Found at i:87575525 original size:47 final size:47
Alignment explanation
Indices: 87575390--87575526 Score: 202
Period size: 47 Copynumber: 2.9 Consensus size: 47
87575380 CCCTTCGGGA
* * * * * * *
87575390 CTTATAACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87575437 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87575484 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
87575527 GCTTTACCAC
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87575607 original size:48 final size:48
Alignment explanation
Indices: 87575527--87575891 Score: 552
Period size: 48 Copynumber: 7.5 Consensus size: 48
87575517 ATCGGCCATT
* *
87575527 GCTTTACCACATATACATGTCTCATATATATATTTCGCATTAGCCATTCG
1 GCTTTACCACATATACATATCTC--ATATATATTTCACATTAGCCATTCG
87575577 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
87575625 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
* * *
87575673 TCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCA
1 GCTTTACCACATATACATATCTC--ATATATATTTCACATTAGCCATTCG
* * * *
87575723 GCTTTACCATATATACATATCTCATATATATTTCGCATTAACCATTCA
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
*
87575771 GCTTTACCACATATACATATCTCATTTATATATATTTCGCATTAGCCATTCG
1 GCTTTACCACATATACATATCTC----ATATATATTTCACATTAGCCATTCG
*
87575823 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
87575871 GCTTTACCA-ATATACATATCT
1 GCTTTACCACATATACATATCT
87575892 TATGCATCAA
Statistics
Matches: 296, Mismatches: 13, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
47 12 0.04
48 172 0.58
50 66 0.22
52 46 0.16
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (48 bp):
GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
Found at i:87575641 original size:98 final size:97
Alignment explanation
Indices: 87575527--87575891 Score: 563
Period size: 98 Copynumber: 3.7 Consensus size: 97
87575517 ATCGGCCATT
* *
87575527 GCTTTACCACATATACATGTCTCATATATATATTTCGCATTAGCCATTCGGCTTTACCACATATA
1 GCTTTACCACATATACATATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATA
87575592 CATATCTC-ATATATATTTCACATTAGCCATTCG
64 CATATCTCTATATATATTTCACATTAGCCATTCG
*
87575625 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGTCTTTACCACATATACA
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
* *
87575690 TATCTCATATATATATTTCACATTAACCATTCA
66 TATCTC-TATATATATTTCACATTAGCCATTCG
* * * *
87575723 GCTTTACCATATATACATATCTCATATATATTTCGCATTAACCATTCAGCTTTACCACATATACA
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
87575788 TATCTCATTTATATATATTTCGCATTAGCCATTCG
66 TATCTC---TATATATATTTCACATTAGCCATTCG
*
87575823 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA-ATATACA
1 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
87575887 TATCT
66 TATCT
87575892 TATGCATCAA
Statistics
Matches: 244, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
96 46 0.19
98 111 0.45
99 12 0.05
100 75 0.31
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (97 bp):
GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCTCTATATATATTTCACATTAGCCATTCG
Found at i:87575696 original size:146 final size:145
Alignment explanation
Indices: 87575521--87575891 Score: 570
Period size: 146 Copynumber: 2.5 Consensus size: 145
87575511 CATCACATCG
* *
87575521 GCCATT-GCTTTACCACATATACATGTCTCATATATATATTTCGCATTAGCCATTCGGCTTTACC
1 GCCATTCGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
* *
87575585 ACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
66 A-ATATACATATCTCATATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCTA
87575649 TATATATTTCACATTA
130 TATATATTTCACATTA
* *
87575665 GCCATTCGTCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCAGCTTTAC
1 GCCATTCG-CTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTAC
*
87575730 CATATATACATATCTCATATATATTTCGCATTAACCATTCAGCTTTACCACATATACATATCTCA
65 CA-ATATACATATCTCATATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTC-
*
87575795 TTTATATATATTTCGCATTA
128 --TATATATATTTCACATTA
*
87575815 GCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTAC
1 GCCATTC-GCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTAC
87575878 CAATATACATATCT
65 CAATATACATATCT
87575892 TATGCATCAA
Statistics
Matches: 208, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
144 6 0.03
145 1 0.00
146 112 0.54
147 12 0.06
148 31 0.15
150 45 0.22
151 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (145 bp):
GCCATTCGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
AATATACATATCTCATATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCTAT
ATATATTTCACATTA
Found at i:87579732 original size:33 final size:33
Alignment explanation
Indices: 87579690--87579755 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
87579680 AATAACCATC
*
87579690 TAGAAAACAATAGAAGACTTTTCCTGGTAATCT
1 TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
87579723 TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
1 TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
87579756 ATCTAACATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (33 bp):
TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
Found at i:87580685 original size:37 final size:37
Alignment explanation
Indices: 87580624--87580702 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
87580614 TTATTACGAA
* * * *
87580624 GTCTCACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
87580661 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
87580698 GTCTT
1 GTCTT
87580703 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:87580898 original size:47 final size:47
Alignment explanation
Indices: 87580820--87581073 Score: 436
Period size: 47 Copynumber: 5.4 Consensus size: 47
87580810 CCCTTCGGGA
* * * * * *
87580820 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87580867 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87580914 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87580961 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87581008 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87581055 CTTATCACATATATACACT
1 CTTATCACATATATACACT
87581074 GTCTTGGCTG
Statistics
Matches: 197, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 197 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87590315 original size:34 final size:34
Alignment explanation
Indices: 87590266--87590331 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
87590256 TGGACTATGA
* * *
87590266 ATTTGACTGATTTGACTGTGATTGTATGACTGTG
1 ATTTAACTGACTTGACAGTGATTGTATGACTGTG
*
87590300 ATTTAACTGACTTGACAGTGGTTGTATGACTG
1 ATTTAACTGACTTGACAGTGATTGTATGACTG
87590332 ATATGCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.41
Consensus pattern (34 bp):
ATTTAACTGACTTGACAGTGATTGTATGACTGTG
Found at i:87590740 original size:32 final size:32
Alignment explanation
Indices: 87590682--87590749 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
87590672 ATTACCGTCG
*
87590682 CTGATGGCTATGTGCCAAACAAAATACAGTTA
1 CTGATGGCTATGTGCCAAACAAAATACAGCTA
* ** * *
87590714 CTGATGGCTTTGTGCCAATTATAATACCGCTA
1 CTGATGGCTATGTGCCAAACAAAATACAGCTA
87590746 CTGA
1 CTGA
87590750 AGGGTTAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (32 bp):
CTGATGGCTATGTGCCAAACAAAATACAGCTA
Found at i:87596935 original size:49 final size:49
Alignment explanation
Indices: 87596875--87597047 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
87596865 CTGGTAGGCA
* *
87596875 TAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACATG
1 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
* * * * * ***
87596924 TAATAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAATAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCCGGTACATG
*
87596975 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
*
87597024 TAGTAGCCTGCACTTAGTACTACA
1 TAATAGCCTGCACTTAGTACTACA
87597048 AACGTGACCT
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 64 0.62
50 2 0.02
51 38 0.37
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
Found at i:87596987 original size:100 final size:100
Alignment explanation
Indices: 87596867--87597054 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
87596857 GAAGCTATCT
* *
87596867 GGTAGGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACATGTAATAGCC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATGTAATAGCC
*
87596932 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACAAACGTGATCACAGTTTTCG
* * *
87596967 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATGTAATAGCC
87597032 TGCACTTAGTACTACAAACGTGA
66 TGCACTTAGTACTACAAACGTGA
87597055 CCTCACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATGTAATAGCC
TGCACTTAGTACTACAAACGTGATCACAGTTTTCG
Found at i:87598093 original size:72 final size:72
Alignment explanation
Indices: 87597976--87598115 Score: 271
Period size: 72 Copynumber: 1.9 Consensus size: 72
87597966 ATTTTAACCT
*
87597976 TAAATGACCAAAATGCCCTTTTTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCT
1 TAAATGACCAAAATGCCCTTATTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCT
87598041 ATACCCC
66 ATACCCC
87598048 TAAATGACCAAAATGCCCTTATTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCT
1 TAAATGACCAAAATGCCCTTATTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCT
87598113 ATA
66 ATA
87598116 AACTTCGAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.35
Consensus pattern (72 bp):
TAAATGACCAAAATGCCCTTATTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCT
ATACCCC
Found at i:87599479 original size:17 final size:18
Alignment explanation
Indices: 87599452--87599487 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
87599442 AATCAAATAT
87599452 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
87599470 ATGC-TATTAATTTATTA
1 ATGCATATTAAATTATTA
87599487 A
1 A
87599488 GACAAGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:87599570 original size:17 final size:17
Alignment explanation
Indices: 87599530--87599570 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 17
87599520 AGTTGATAAA
87599530 AATTAATATATCAATTAT
1 AATTAA-ATATCAATTAT
87599548 AA-TAAATAT-AATTAT
1 AATTAAATATCAATTAT
87599563 ATATTAAA
1 A-ATTAAA
87599571 GATTATCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 7 0.33
16 5 0.24
17 7 0.33
18 2 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTAAATATCAATTAT
Found at i:87615184 original size:40 final size:40
Alignment explanation
Indices: 87615127--87615273 Score: 222
Period size: 40 Copynumber: 3.7 Consensus size: 40
87615117 CAATATATTA
* **
87615127 TATATCCGGGTTCAATCCCATAGGCTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
87615167 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
* * *
87615207 TATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
* *
87615247 TATATCCAGGTTAAAACCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTT
87615274 AGTGCTAGTA
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
Found at i:87615308 original size:80 final size:80
Alignment explanation
Indices: 87615127--87615313 Score: 207
Period size: 80 Copynumber: 2.3 Consensus size: 80
87615117 CAATATATTA
* * ** * * * *
87615127 TATATCCGGGTTCAATCCCATAGGCTTCGTGTTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
1 TATATCCGGGATAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
* * * *
87615192 TTCGTGTTGGTAATG
66 TTAGTGCTAGTAATC
* *
87615207 TATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
1 TATATCCGGGATAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
87615272 TTAGTGCTAGT-A-C
66 TTAGTGCTAGTAATC
*
87615285 TATATCCGGGCATAAAGTTCCGCAGGCTT
1 TATATCCGGG-ATAAA-TCCCGCAGGCTT
87615314 TGAGCTAGTA
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
78 9 0.10
79 5 0.06
80 76 0.84
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (80 bp):
TATATCCGGGATAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
TTAGTGCTAGTAATC
Found at i:87622848 original size:40 final size:39
Alignment explanation
Indices: 87622804--87622953 Score: 131
Period size: 40 Copynumber: 3.9 Consensus size: 39
87622794 CGATATATTA
* *
87622804 TATATCTGGGTTAAATCCTGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCC-GCAGGCTTAGTGCTGGTAATG
87622844 TATATCCGGGTTAAATCC-C--G--TAG-GCT--TAA--
1 TATATCCGGGTTAAATCCGCAGGCTTAGTGCTGGTAATG
* *
87622873 TATATTCGGGTTAAATCCCGCAGGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAAT--C-C--GCAGGCTTAGTGCTGGTAATG
87622917 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 TATATCCGGGTTAAAT-CCGCAGGCTTAGTGCTGGTA
87622954 CTATATCCGG
Statistics
Matches: 89, Mismatches: 6, Indels: 30
0.71 0.05 0.24
Matches are distributed among these distances:
29 15 0.17
31 4 0.04
32 1 0.01
33 3 0.03
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 2 0.02
40 37 0.42
42 4 0.04
43 2 0.02
44 15 0.17
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
TATATCCGGGTTAAATCCGCAGGCTTAGTGCTGGTAATG
Found at i:87628036 original size:13 final size:13
Alignment explanation
Indices: 87628018--87628043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87628008 GCTCGGCAGG
87628018 GACACGCCTGTGT
1 GACACGCCTGTGT
87628031 GACACGCCTGTGT
1 GACACGCCTGTGT
87628044 TCGAGCCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:87630670 original size:19 final size:20
Alignment explanation
Indices: 87630635--87630672 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
87630625 TTGAAAAGGT
87630635 AAATAAAGATAAAAGTAAAC
1 AAATAAAGATAAAAGTAAAC
*
87630655 AAATAAATAT-AAAGTAAA
1 AAATAAAGATAAAAGTAAA
87630673 GTCTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
AAATAAAGATAAAAGTAAAC
Found at i:87637320 original size:21 final size:19
Alignment explanation
Indices: 87637286--87637329 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
87637276 TGGGAAAAAT
*
87637286 GAGAGAAAAAGTGAAATAA
1 GAGAGAAAAAGTGAAAGAA
*
87637305 GAGAGAAAAATTGTGAGAGAA
1 GAGAGAAAAA--GTGAAAGAA
87637326 GAGA
1 GAGA
87637330 TGTGAATGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
21 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.32, T:0.11
Consensus pattern (19 bp):
GAGAGAAAAAGTGAAAGAA
Found at i:87643996 original size:83 final size:83
Alignment explanation
Indices: 87643857--87644025 Score: 234
Period size: 83 Copynumber: 2.0 Consensus size: 83
87643847 TAGTGATATA
* *
87643857 ATATCAGGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCTTATTGCCTAGCAG
1 ATATCAAGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTGCCTAGCAG
*
87643922 GCTT-TATGTCGGTGTATT
66 G-TTCTATGCCGGTGTATT
* * * *
87643940 ATATCAAGCTTTATTGCCTAGCAGGCTTT-ATGCCTGTGTATTATGTCAGGCCTATTGCCTAGCA
1 ATATCAAGC-TTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTGCCTAGCA
*
87644004 GGTTCTGTGCCGGTGTATT
65 GGTTCTATGCCGGTGTATT
87644023 ATA
1 ATA
87644026 CTAGGGTTTA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
82 2 0.03
83 56 0.74
84 18 0.24
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (83 bp):
ATATCAAGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTGCCTAGCAG
GTTCTATGCCGGTGTATT
Found at i:87644020 original size:41 final size:41
Alignment explanation
Indices: 87643857--87644025 Score: 223
Period size: 42 Copynumber: 4.1 Consensus size: 41
87643847 TAGTGATATA
* * *
87643857 ATATCAGGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATT
*
87643899 ATATCAGGCTTATTGCCTAGCAGGCTTTATGTCGGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATT
* *
87643940 ATATCAAGCTTTATTGCCTAGCAGGCTTTATGCCTGTGTATT
1 ATATCAGGC-TTATTGCCTAGCAGGCTTTATGCCGGTGTATT
* * *
87643982 ATGTCAGGCCTATTGCCTAGCAGG-TTCTGTGCCGGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTT-TATGCCGGTGTATT
87644023 ATA
1 ATA
87644026 CTAGGGTTTA
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
40 2 0.02
41 46 0.41
42 64 0.57
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATT
Found at i:87658272 original size:41 final size:41
Alignment explanation
Indices: 87658182--87658358 Score: 187
Period size: 42 Copynumber: 4.3 Consensus size: 41
87658172 CAGTAATATA
* *
87658182 ATATCAGGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCAGTGTATT
* *
87658224 ATATCAGGCTTATTGCCTAGTAGGCTTTATGTCAGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCAGTGTATT
* * *
87658265 ATATCAGGCTTTATTGCCTAACAGGCTTTATGTCGGTGTATT
1 ATATCAGGC-TTATTGCCTAGCAGGCTTTATGCCAGTGTATT
* * * * * *
87658307 ATGTTAGGCCTATTACCTAGTAGG-TTCTATGCCGGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTT-TATGCCAGTGTATT
87658348 ATA-CTAGGCTT
1 ATATC-AGGCTT
87658359 TACACCTAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.02
41 51 0.44
42 62 0.54
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (41 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCAGTGTATT
Found at i:87658304 original size:83 final size:84
Alignment explanation
Indices: 87658182--87658360 Score: 213
Period size: 83 Copynumber: 2.2 Consensus size: 84
87658172 CAGTAATATA
* * *
87658182 ATATCAGGC-TTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCTTATTGCCTAGTA
1 ATATCAGGCTTTATTGCCTAACAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTACCTAGTA
*
87658246 GGCTT-TATGTCAGTGTATT
66 GG-TTCTATGCCAGTGTATT
* * * * * *
87658265 ATATCAGGCTTTATTGCCTAACAGGCTTT-ATGTCGGTGTATTATGTTAGGCCTATTACCTAGTA
1 ATATCAGGCTTTATTGCCTAACAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTACCTAGTA
*
87658329 GGTTCTATGCCGGTGTATT
66 GGTTCTATGCCAGTGTATT
87658348 ATA-CTAGGCTTTA
1 ATATC-AGGCTTTA
87658361 CACCTAGCAA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
82 3 0.04
83 62 0.76
84 17 0.21
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (84 bp):
ATATCAGGCTTTATTGCCTAACAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTACCTAGTA
GGTTCTATGCCAGTGTATT
Found at i:87671830 original size:40 final size:40
Alignment explanation
Indices: 87671786--87671926 Score: 156
Period size: 40 Copynumber: 3.5 Consensus size: 40
87671776 GAATACACGT
* * * *
87671786 CACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
** * *
87671826 CACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
87671866 CACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
87671906 CACTAGCACAAATGCTCTTCG
1 CACCAGCACGAATGCTCTTCG
87671927 NNNNNNNNNN
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:87680874 original size:48 final size:48
Alignment explanation
Indices: 87680809--87680918 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
87680799 ATGAGATCGC
* **
87680809 GTGTTAGACCATATTTGGGACATGGAATCCGTGTTGATATGAGAGCCA
1 GTGTAAGACCATATTTGGGACATGGAATCCGCATTGATATGAGAGCCA
* * * * *
87680857 GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTGTGCCA
1 GTGTAAGACCATATTTGGGACATGGAATCCGCATTGATATGAGAGCCA
87680905 GTGTAAGACCATAT
1 GTGTAAGACCATAT
87680919 CTAGGATATG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATATTTGGGACATGGAATCCGCATTGATATGAGAGCCA
Found at i:87680996 original size:42 final size:42
Alignment explanation
Indices: 87680950--87681060 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
87680940 AGATTTTGTG
* *
87680950 TAAGACCATGTCTGAGACATGGCATCGATATGAGTTCCCATA
1 TAAGACCATGTCTGGGACATGGCATCGATATGAGGTCCCATA
* * *
87680992 TAAGACTATATCTGGGACATGGCATCGATATGAGGTCCCGTA
1 TAAGACCATGTCTGGGACATGGCATCGATATGAGGTCCCATA
*
87681034 TAAGACCATGTCTGGGACATGGAATCG
1 TAAGACCATGTCTGGGACATGGCATCG
87681061 GAACCGACAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATCGATATGAGGTCCCATA
Found at i:87691182 original size:37 final size:37
Alignment explanation
Indices: 87691129--87691231 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
87691119 CGAATAGTCC
*
87691129 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
87691166 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
87691203 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
87691232 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:87691432 original size:48 final size:48
Alignment explanation
Indices: 87691380--87691522 Score: 243
Period size: 48 Copynumber: 3.0 Consensus size: 48
87691370 ACATCTCCTA
* *
87691380 CATATTTCACATTAGCCATTCGGCTTTACCACATATACCTATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
87691428 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-T
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
*
87691475 CTATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 C-ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
87691523 ANNNNNNNNN
Statistics
Matches: 90, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
47 2 0.02
48 88 0.98
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (48 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
Found at i:87704039 original size:47 final size:46
Alignment explanation
Indices: 87703965--87704202 Score: 309
Period size: 47 Copynumber: 5.0 Consensus size: 46
87703955 NNNNNNNNNN
* *
87703965 TTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATGTACT
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT-TACT
* *
87704012 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA-CACAT
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATTAC-T
* *
87704058 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA-CACAT
1 -TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATTAC-T
87704105 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACT
1 -TTCACATTCATCACATTGGCCATTCGGCCTTATCA--CATATAT-TACT
* *
87704155 TTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATACT
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT-TACT
87704202 T
1 T
87704203 GTACATCAAT
Statistics
Matches: 177, Mismatches: 8, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 133 0.75
49 38 0.21
50 1 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (46 bp):
TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATTACT
Found at i:87705235 original size:25 final size:25
Alignment explanation
Indices: 87705207--87705274 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
87705197 CTCCATAGCA
*
87705207 TGTGAGAGCATACCGATTTATAACT
1 TGTGAGAGCATACCGATTTACAACT
* * *
87705232 TGTGAGAGCATACTGATCTACAGCT
1 TGTGAGAGCATACCGATTTACAACT
* *
87705257 TGAGTGAGCATACCGATT
1 TGTGAGAGCATACCGATT
87705275 CACAGCTCGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
TGTGAGAGCATACCGATTTACAACT
Found at i:87725262 original size:50 final size:50
Alignment explanation
Indices: 87725086--87725323 Score: 217
Period size: 51 Copynumber: 4.7 Consensus size: 50
87725076 CTATTTTGTG
* * * **
87725086 CACATAGTAGCCTGCACATAGTACTACATATGTGACCAGAACCGTCTCTTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACC-GAACCATCTGATA
* * * * * * * *
87725137 CATATAAT-GTTCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTA
1 CACATAGTAG-CCTGCACTTAGTACTACACATGTGACCGAA-CCATCTGATA
* * *
87725188 CGCATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATCTGATA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCTGATA
* * * * *
87725238 CACATAGTAGCCTGCACTTAGTACTACACAAGTGACCTAAAACCATTTTAAA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACC--GAACCATCTGATA
* *
87725290 CACATAGTAACCTGCACATAGTACTACACATGTG
1 CACATAGTAGCCTGCACTTAGTACTACACATGTG
87725324 TCCTCACAAT
Statistics
Matches: 149, Mismatches: 33, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
50 45 0.30
51 63 0.42
52 41 0.28
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
CACATAGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCTGATA
Found at i:87725304 original size:52 final size:50
Alignment explanation
Indices: 87725190--87725319 Score: 179
Period size: 52 Copynumber: 2.6 Consensus size: 50
87725180 ATCGGGTACG
* * *
87725190 CATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACAAGTGACCTAACCATCTGAAACA
* *
87725240 CATAGTAGCCTGCACTTAGTACTACACAAGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACAAGTGACCT--AACCATCTGAAACA
* *
87725292 CATAGTAACCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
87725320 TGTGTCCTCA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 34 0.48
52 37 0.52
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACAAGTGACCTAACCATCTGAAACA
Found at i:87725318 original size:26 final size:26
Alignment explanation
Indices: 87725236--87725320 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
87725226 AACCATCTGA
* *
87725236 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAACCTGCACATAGTAC
* ** **
87725262 TACACA-AGTGACCTAAAACCATTTTA-
1 TACACATAGTAACCT-GCA-CATAGTAC
*
87725288 AACACATAGTAACCTGCACATAGTAC
1 TACACATAGTAACCTGCACATAGTAC
87725314 TACACAT
1 TACACAT
87725321 GTGTCCTCAC
Statistics
Matches: 41, Mismatches: 14, Indels: 8
0.65 0.22 0.13
Matches are distributed among these distances:
25 11 0.27
26 19 0.46
27 11 0.27
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.25
Consensus pattern (26 bp):
TACACATAGTAACCTGCACATAGTAC
Found at i:87728498 original size:43 final size:43
Alignment explanation
Indices: 87728342--87728483 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
87728332 TATGTTCTCG
* *
87728342 TGTAAGACCACGTCTGGGACGTTGGTATCGATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTGCA
* * *
87728385 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTG-A
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTGCA
* * * * *
87728426 TGTAAGACC-CTATCTGGAATAG-TGGCATTGATATGTAATTGCA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGTGATTGCA
87728469 TGTAAGACCACGTCT
1 TGTAAGACCACGTCT
87728484 AGGATGTTAG
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
41 23 0.29
42 16 0.20
43 40 0.50
44 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTGCA
Found at i:87734036 original size:43 final size:43
Alignment explanation
Indices: 87733880--87734021 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
87733870 TATGTTCTCG
* *
87733880 TGTAAGACCACGTCTGGGACGTTGGTATCGATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTGCA
* * *
87733923 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTG-A
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTGCA
* * * * *
87733964 TGTAAGACC-CTATCTGGAATAG-TGGCATTGATATGTAATTGCA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGTGATTGCA
87734007 TGTAAGACCACGTCT
1 TGTAAGACCACGTCT
87734022 AGGATGTTAG
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
41 23 0.29
42 16 0.20
43 40 0.50
44 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTGCA
Found at i:87741954 original size:27 final size:27
Alignment explanation
Indices: 87741923--87742100 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87741913 TAAATTGTAC
87741923 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87741950 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87741976 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87742004 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87742032 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87742059 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87742086 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87742101 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87742037 original size:82 final size:81
Alignment explanation
Indices: 87741924--87742079 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87741914 AAATTGTACA
* *
87741924 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87741988 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87742005 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87742070 TGCGAGTTGA
65 TGCGAATTGA
87742080 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87742091 original size:82 final size:81
Alignment explanation
Indices: 87741920--87742100 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
87741910 GATTAAATTG
* *
87741920 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87741985 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87742001 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87742065 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87742083 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87742101 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87749129 original size:27 final size:27
Alignment explanation
Indices: 87749098--87749275 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87749088 TAAATTGTAC
87749098 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87749125 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87749151 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87749179 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87749207 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87749234 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87749261 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87749276 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87749212 original size:82 final size:81
Alignment explanation
Indices: 87749099--87749254 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87749089 AAATTGTACA
* *
87749099 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87749163 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87749180 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87749245 TGCGAGTTGA
65 TGCGAATTGA
87749255 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87749266 original size:82 final size:81
Alignment explanation
Indices: 87749095--87749275 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
87749085 GATTAAATTG
* *
87749095 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87749160 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87749176 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87749240 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87749258 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87749276 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87755130 original size:11 final size:11
Alignment explanation
Indices: 87755114--87755166 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
87755104 TTATATCATA
87755114 GCATATCATGT
1 GCATATCATGT
*
87755125 GCATATCAT-A
1 GCATATCATGT
*
87755135 ACATATCATGT
1 GCATATCATGT
87755146 GCATATCATGT
1 GCATATCATGT
87755157 -CATATCATGT
1 GCATATCATGT
87755167 ATATCAATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
10 18 0.49
11 19 0.51
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
GCATATCATGT
Found at i:87755132 original size:21 final size:21
Alignment explanation
Indices: 87755106--87755166 Score: 97
Period size: 21 Copynumber: 2.9 Consensus size: 21
87755096 TACAGTGATT
87755106 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
87755127 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
87755148 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
87755167 ATATCAATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:87755134 original size:5 final size:5
Alignment explanation
Indices: 87755106--87755164 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
87755096 TACAGTGATT
* * * * *
87755106 ATATC ATAGC ATATC ATGTGC ATATC ATAAC ATATC ATGTGC ATATC ATGTC
1 ATATC ATATC ATATC ATAT-C ATATC ATATC ATATC ATAT-C ATATC ATATC
87755158 ATATC AT
1 ATATC AT
87755165 GTATATCAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 34 0.81
6 8 0.19
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (5 bp):
ATATC
Found at i:87755176 original size:10 final size:10
Alignment explanation
Indices: 87755106--87755172 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
87755096 TACAGTGATT
87755106 ATATCATAG-C
1 ATATCAT-GTC
87755116 ATATCATGTGC
1 ATATCATGT-C
**
87755127 ATATCATAAC
1 ATATCATGTC
87755137 ATATCATGTGC
1 ATATCATGT-C
87755148 ATATCATGTC
1 ATATCATGTC
87755158 ATATCATGT-
1 ATATCATGTC
87755167 ATATCA
1 ATATCA
87755173 ATGTTTCATG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:87757705 original size:183 final size:183
Alignment explanation
Indices: 87757397--87757762 Score: 732
Period size: 183 Copynumber: 2.0 Consensus size: 183
87757387 ACCATGTCCC
87757397 CTATAGCATACTCAATATCCTTACGCTTCAGATCAGCATAAGACTTTTGTCGATCTGTTGCCTCC
1 CTATAGCATACTCAATATCCTTACGCTTCAGATCAGCATAAGACTTTTGTCGATCTGTTGCCTCC
87757462 TTTAACCGATTCCTGATCACCTTAACCTTGTCTTCAGTATCTGTTACCAACTCTGGTCCAAGTAC
66 TTTAACCGATTCCTGATCACCTTAACCTTGTCTTCAGTATCTGTTACCAACTCTGGTCCAAGTAC
87757527 TTGCCTTTCACCCAACTCTGCCCAACAAGTAGGCGAACGACACCTTCGCCTAG
131 TTGCCTTTCACCCAACTCTGCCCAACAAGTAGGCGAACGACACCTTCGCCTAG
87757580 CTATAGCATACTCAATATCCTTACGCTTCAGATCAGCATAAGACTTTTGTCGATCTGTTGCCTCC
1 CTATAGCATACTCAATATCCTTACGCTTCAGATCAGCATAAGACTTTTGTCGATCTGTTGCCTCC
87757645 TTTAACCGATTCCTGATCACCTTAACCTTGTCTTCAGTATCTGTTACCAACTCTGGTCCAAGTAC
66 TTTAACCGATTCCTGATCACCTTAACCTTGTCTTCAGTATCTGTTACCAACTCTGGTCCAAGTAC
87757710 TTGCCTTTCACCCAACTCTGCCCAACAAGTAGGCGAACGACACCTTCGCCTAG
131 TTGCCTTTCACCCAACTCTGCCCAACAAGTAGGCGAACGACACCTTCGCCTAG
87757763 ACAGTGCCTC
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 183 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (183 bp):
CTATAGCATACTCAATATCCTTACGCTTCAGATCAGCATAAGACTTTTGTCGATCTGTTGCCTCC
TTTAACCGATTCCTGATCACCTTAACCTTGTCTTCAGTATCTGTTACCAACTCTGGTCCAAGTAC
TTGCCTTTCACCCAACTCTGCCCAACAAGTAGGCGAACGACACCTTCGCCTAG
Found at i:87762833 original size:31 final size:29
Alignment explanation
Indices: 87762759--87762851 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 29
87762749 GTTCAGTCTC
** *
87762759 AACATATACTGGGCCGAAGCCTTTTGTTT
1 AACATATACTGGGCCGAAGCCTTTTCATA
87762788 AACAGT-TACTGGGCCGAAGCCTTTTCATA
1 AACA-TATACTGGGCCGAAGCCTTTTCATA
*
87762817 AATCATATCACTGGGCCGAAGCCTTTGCTATA
1 AA-CATAT-ACTGGGCCGAAGCCTTTTC-ATA
87762849 AAC
1 AAC
87762852 GGTATGACCC
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
29 27 0.49
30 4 0.07
31 19 0.35
32 5 0.09
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (29 bp):
AACATATACTGGGCCGAAGCCTTTTCATA
Found at i:87763178 original size:11 final size:11
Alignment explanation
Indices: 87763165--87763217 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
87763155 TATATCATAG
*
87763165 CATATCATGTG
1 CATATCATGTA
*
87763176 CATATCAT-AA
1 CATATCATGTA
87763186 CATATCATGTA
1 CATATCATGTA
87763197 CATATCATGT-
1 CATATCATGTA
87763207 CATATCATGTA
1 CATATCATGTA
87763218 TATCAATGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 18 0.49
11 19 0.51
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (11 bp):
CATATCATGTA
Found at i:87763180 original size:21 final size:21
Alignment explanation
Indices: 87763156--87763217 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
87763146 TATAGTGAAT
*
87763156 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTAC
*
87763177 ATATCATAACATATCATGTAC
1 ATATCATAGCATATCATGTAC
87763198 ATATCAT-GTCATATCATGTA
1 ATATCATAG-CATATCATGTA
87763218 TATCAATGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAGCATATCATGTAC
Found at i:87763184 original size:5 final size:5
Alignment explanation
Indices: 87763156--87763214 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
87763146 TATAGTGAAT
* * * * *
87763156 ATATC ATAGC ATATC ATGTGC ATATC ATAAC ATATC ATGTAC ATATC ATGTC
1 ATATC ATATC ATATC ATAT-C ATATC ATATC ATATC ATAT-C ATATC ATATC
87763208 ATATC AT
1 ATATC AT
87763215 GTATATCAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 34 0.81
6 8 0.19
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (5 bp):
ATATC
Found at i:87763226 original size:10 final size:10
Alignment explanation
Indices: 87763156--87763222 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
87763146 TATAGTGAAT
87763156 ATATCATAG-C
1 ATATCAT-GTC
87763166 ATATCATGTGC
1 ATATCATGT-C
**
87763177 ATATCATAAC
1 ATATCATGTC
87763187 ATATCATGTAC
1 ATATCATGT-C
87763198 ATATCATGTC
1 ATATCATGTC
87763208 ATATCATGT-
1 ATATCATGTC
87763217 ATATCA
1 ATATCA
87763223 ATGTTTCATG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:87767837 original size:20 final size:21
Alignment explanation
Indices: 87767803--87767843 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
87767793 ATGATTTCAT
*
87767803 GAAATTTTTTTTATGTGTTTG
1 GAAATTTTTTATATGTGTTTG
87767824 GAAA-TTTTTATATGTGTTTG
1 GAAATTTTTTATATGTGTTTG
87767844 ATTTAGTCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.59
Consensus pattern (21 bp):
GAAATTTTTTATATGTGTTTG
Found at i:87771424 original size:16 final size:16
Alignment explanation
Indices: 87771405--87771441 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
87771395 GTAAATCGGC
*
87771405 AAAAGCCGAAATGTCG
1 AAAAGCCGAAATGCCG
87771421 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
87771437 AAAAG
1 AAAAG
87771442 TCAAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.19, G:0.24, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:87771741 original size:29 final size:29
Alignment explanation
Indices: 87771659--87771774 Score: 137
Period size: 29 Copynumber: 4.1 Consensus size: 29
87771649 GTGAGCATGA
* *
87771659 ATAT-AATGTGATTTGGGCCAAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
87771687 ATATAAATGAG-GTTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
*
87771715 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
87771744 ATATGAACGTGAATTGGGCATGATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
87771773 AT
1 AT
87771775 CTAAATGAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 28 0.36
29 49 0.64
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTAATGGGCC
Found at i:87775466 original size:26 final size:26
Alignment explanation
Indices: 87775428--87775501 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
87775418 CTCTTTTAGT
87775428 AACTGGGGTAAAAGCCCTTTTTGATA
1 AACTGGGGTAAAAGCCCTTTTTGATA
* * * *
87775454 AATTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGTAAAAGCCCTTTTTGATA
87775480 AACTGGGGTAAAAGCCCTTTTT
1 AACTGGGGTAAAAGCCCTTTTT
87775502 ACACTTCCTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
AACTGGGGTAAAAGCCCTTTTTGATA
Found at i:87776537 original size:25 final size:25
Alignment explanation
Indices: 87776503--87776553 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
87776493 CGCTTTAGAA
87776503 TACGAACACTTACCACAGTCTCTCT
1 TACGAACACTTACCACAGTCTCTCT
87776528 TACGAACACTTACCACAGTCTCTCT
1 TACGAACACTTACCACAGTCTCTCT
87776553 T
1 T
87776554 CTTGAATCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.35, G:0.08, T:0.29
Consensus pattern (25 bp):
TACGAACACTTACCACAGTCTCTCT
Found at i:87779750 original size:183 final size:182
Alignment explanation
Indices: 87779440--87779805 Score: 522
Period size: 183 Copynumber: 2.0 Consensus size: 182
87779430 CACATAATTA
* * *
87779440 CATATTATTCAACAATAACCACAAAGCATAATATTTCATGATAATAATCAGCATCATATCATATA
1 CATATTACTCAACAATAACCACAAAGCATAATATTTCACGATAAAAATCAG-A-CATATCATATA
** * *
87779505 AACAACATTAAATTGCTTAAAATGACAATTATGTTACTACATTTACACATGAACTTACCTTGGTA
64 AACAACATTAAATAACTTAAAATAACAATTATGCTACTACATTTACACATGAACTTACCTTGGTA
87779570 CCAAAATATAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATCNG
129 CCAAAATATAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATC-G
* * *
87779625 CATATTACTCAACATTAACCACAAAGCATAATATTTCACGATTAAAAATTAG-CGTATCATATAA
1 CATATTACTCAACAATAACCACAAAGCATAATATTTCACGA-TAAAAATCAGACATATCATATAA
** * * *
87779689 TTAACA-TCAATAACTTAAAAATAACAATTATGCTAC-ATTATTTACACGTGAACTTACCTTGGT
65 ACAACATTAAATAACTT-AAAATAACAATTATGCTACTA-CATTTACACATGAACTTACCTTGGT
87779752 ACCAAAATATAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATC
128 ACCAAAATATAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATC
87779806 ACGACTTGAA
Statistics
Matches: 163, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
182 8 0.05
183 109 0.67
185 38 0.23
186 8 0.05
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.34
Consensus pattern (182 bp):
CATATTACTCAACAATAACCACAAAGCATAATATTTCACGATAAAAATCAGACATATCATATAAA
CAACATTAAATAACTTAAAATAACAATTATGCTACTACATTTACACATGAACTTACCTTGGTACC
AAAATATAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATCG
Found at i:87781384 original size:23 final size:23
Alignment explanation
Indices: 87781322--87781385 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
87781312 TGAAAAAACA
* *
87781322 AAATCAAAAGAAAAAGAAAAGAG
1 AAATAAAAAGAAAAAGGAAAGAG
*
87781345 CAATAAAAAGAAAAAGGAAAGAG
1 AAATAAAAAGAAAAAGGAAAGAG
87781368 AAATAAAAAGAAAAAGGA
1 AAATAAAAAGAAAAAGGA
87781386 GTTTAAGGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.73, C:0.03, G:0.19, T:0.05
Consensus pattern (23 bp):
AAATAAAAAGAAAAAGGAAAGAG
Found at i:87783287 original size:27 final size:27
Alignment explanation
Indices: 87783257--87783434 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87783247 ATATTGAGTC
* * * *
87783257 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87783284 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87783311 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87783339 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87783366 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87783393 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87783420 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87783435 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87783396 original size:82 final size:81
Alignment explanation
Indices: 87783278--87783433 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87783268 TGCTATATAA
* *
87783278 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87783343 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87783360 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87783424 CACTTAGTGC
65 CACTTAGTGC
87783434 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87786326 original size:43 final size:43
Alignment explanation
Indices: 87786265--87786348 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
87786255 AAAAAAGTCA
87786265 TTTAATTTGATAAAAGAACGACTCACCAATGCTCCATTATTCC
1 TTTAATTTGATAAAAGAACGACTCACCAATGCTCCATTATTCC
*
87786308 TTTAATTTGATAAAAGAACGACTCACCAATGCTCTATTATT
1 TTTAATTTGATAAAAGAACGACTCACCAATGCTCCATTATT
87786349 AGCTTTACTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35
Consensus pattern (43 bp):
TTTAATTTGATAAAAGAACGACTCACCAATGCTCCATTATTCC
Found at i:87786361 original size:43 final size:43
Alignment explanation
Indices: 87786265--87786361 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 43
87786255 AAAAAAGTCA
*
87786265 TTTAATTTGATAAAAGAACGACTCACCAATGCTCCATTATTCC
1 TTTAACTTGATAAAAGAACGACTCACCAATGCTCCATTATTCC
* * *
87786308 TTTAATTTGATAAAAGAACGACTCACCAATGCTCTATTATTAGC
1 TTTAACTTGATAAAAGAACGACTCACCAATGCTCCATTATT-CC
87786352 TTT-ACTTGAT
1 TTTAACTTGAT
87786362 TTTACTAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 46 0.92
44 4 0.08
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (43 bp):
TTTAACTTGATAAAAGAACGACTCACCAATGCTCCATTATTCC
Found at i:87787982 original size:18 final size:18
Alignment explanation
Indices: 87787925--87787983 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
87787915 TAGCCCATTT
*
87787925 CAGTAATAGTAATCAG-A
1 CAGTAACAGTAATCAGTA
* *
87787942 GCAGTAACCA-TGATCAATA
1 -CAGTAA-CAGTAATCAGTA
*
87787961 CAGTAACAGTAATCAGTC
1 CAGTAACAGTAATCAGTA
87787979 CAGTA
1 CAGTA
87787984 TGCAAACAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTA
Found at i:87788290 original size:23 final size:23
Alignment explanation
Indices: 87788235--87788290 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
87788225 TATGCCACCC
87788235 CATGCAATGCAACATAATAATATA
1 CATGC-ATGCAACATAATAATATA
*
87788259 CATGGATGCAACATACAT-ATA-A
1 CATGCATGCAACATA-ATAATATA
87788281 CATCGCATGC
1 CAT-GCATGC
87788291 TCAAATATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.14
23 18 0.64
24 6 0.21
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.23
Consensus pattern (23 bp):
CATGCATGCAACATAATAATATA
Found at i:87788371 original size:27 final size:27
Alignment explanation
Indices: 87788325--87788522 Score: 204
Period size: 27 Copynumber: 7.3 Consensus size: 27
87788315 GAACAAATCT
* ** *
87788325 GTCATTTTACCTTACCGGGGTATTACA
1 GTCATTTTACCCTATAGGGGTATTTCA
*
87788352 GTCATTTTACCCTACAGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCA
* *
87788379 GTCATTTTACCCTACACGGGTATTAT-A
1 GTCATTTTACCCTATAGGGGTATT-TCA
* *
87788406 GTCATTTTACCTTATAGCGGTATTTC-
1 GTCATTTTACCCTATAGGGGTATTTCA
* **
87788432 GATCATTTTACCCTATGGGGGTATTTTG
1 G-TCATTTTACCCTATAGGGGTATTTCA
* *
87788460 GTCATTTTACCTTATGGGGGTATTTC-
1 GTCATTTTACCCTATAGGGGTATTTCA
* *
87788486 GATCATTTTACCCTATGGGGGTATTTCG
1 G-TCATTTTACCCTATAGGGGTATTTCA
87788514 GTCATTTTA
1 GTCATTTTA
87788523 TCATATAAGG
Statistics
Matches: 150, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
26 3 0.02
27 144 0.96
28 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCA
Found at i:87788388 original size:54 final size:54
Alignment explanation
Indices: 87788326--87788522 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
87788316 AACAAATCTG
* * *
87788326 TCATTTTACCTTACCGGGGTATTACAGTCATTTTACCCTACAGGGGTATTTC-A
1 TCATTTTACCCTACCGGGGTATTACAGTCATTTTACCTTATAGGGGTATTTCGA
* *
87788379 GTCATTTTACCCTACAC-GGGTATTATAGTCATTTTACCTTATAGCGGTATTTCGA
1 -TCATTTTACCCTAC-CGGGGTATTACAGTCATTTTACCTTATAGGGGTATTTCGA
** *** *
87788434 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTACCGGGGTATTACAGTCATTTTACCTTATAGGGGTATTTCGA
** * *
87788488 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTA
1 TCATTTTACCCTACCGGGGTATTACAGTCATTTTA
87788523 TCATATAAGG
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
54 126 0.98
55 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTACCGGGGTATTACAGTCATTTTACCTTATAGGGGTATTTCGA
Found at i:87788547 original size:27 final size:27
Alignment explanation
Indices: 87788514--87788614 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
87788504 GGGTATTTCG
*
87788514 GTCATTTTATCATATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
87788541 GTTATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
87788568 GTCATTTTATCACCTTAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
87788595 ATCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
87788615 TTCAGGTACG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:87788548 original size:54 final size:54
Alignment explanation
Indices: 87788430--87788549 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
87788420 TAGCGGTATT
* * * ** **
87788430 TCGATCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCTTATGGGGGTATT
1 TCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCATATAGGGCAAAA
*
87788484 TCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTATCATATAAGGGCAAAA
1 TCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCATAT-AGGGCAAAA
*
87788539 TCG-TTATTTTA
1 TCGATCATTTTA
87788550 TCACATAAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 49 0.88
55 7 0.12
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (54 bp):
TCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCATATAGGGCAAAA
Found at i:87791379 original size:28 final size:28
Alignment explanation
Indices: 87791339--87791397 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
87791329 CATGTGATAG
87791339 TTTGATTAGTTTGAACAAACTCTTCAAT
1 TTTGATTAGTTTGAACAAACTCTTCAAT
*
87791367 TTTGGTTAGTTTGAACAAACTCTTCAAT
1 TTTGATTAGTTTGAACAAACTCTTCAAT
87791395 TTT
1 TTT
87791398 TAATTAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.46
Consensus pattern (28 bp):
TTTGATTAGTTTGAACAAACTCTTCAAT
Found at i:87794608 original size:40 final size:39
Alignment explanation
Indices: 87794564--87794668 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
87794554 AGTGACCATA
*
87794564 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
87794604 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
87794642 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
87794669 AACGAGGAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:87794625 original size:39 final size:40
Alignment explanation
Indices: 87794524--87794668 Score: 165
Period size: 40 Copynumber: 3.6 Consensus size: 40
87794514 TTGAATGATG
* *
87794524 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
87794564 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
87794603 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
87794643 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87794669 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
39 34 0.37
40 46 0.51
41 10 0.11
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:87794682 original size:40 final size:39
Alignment explanation
Indices: 87794525--87794687 Score: 100
Period size: 40 Copynumber: 4.1 Consensus size: 39
87794515 TGAATGATGT
** * * *
87794525 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTATAA
* * ** *
87794565 CCGGACTAAGATCCGAAGGCATTTGTGCGAGAT-ACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAG-TGACTATA-A
** *
87794605 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
* *
87794644 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTATAA
87794684 CCGG
1 CCGG
87794688 TTAAATTCCG
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 34 0.33
40 60 0.58
41 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:87794687 original size:79 final size:80
Alignment explanation
Indices: 87794524--87794674 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
87794514 TTGAATGATG
*
87794524 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
87794589 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
87794604 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
87794666 TTGAACGAG
64 TTGAACGAG
87794675 GAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:87797626 original size:19 final size:17
Alignment explanation
Indices: 87797602--87797641 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
87797592 AAGTGATACC
*
87797602 TAAATTATAATTTATTATT
1 TAAATTAT-ATATATT-TT
87797621 TAAATTATATATATTTT
1 TAAATTATATATATTTT
87797638 TAAA
1 TAAA
87797642 AAAATCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 6 0.30
19 8 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TAAATTATATATATTTT
Found at i:87801024 original size:18 final size:19
Alignment explanation
Indices: 87800997--87801034 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
87800987 ATAAAAAAAT
* *
87800997 AATTTTATAATAAA-TTTA
1 AATTTAATAAAAAACTTTA
87801015 AATTTAATAAAAAACTTTA
1 AATTTAATAAAAAACTTTA
87801034 A
1 A
87801035 TAGTATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTAATAAAAAACTTTA
Found at i:87801648 original size:90 final size:90
Alignment explanation
Indices: 87801490--87801656 Score: 253
Period size: 90 Copynumber: 1.9 Consensus size: 90
87801480 ATTGAGATGG
** * *
87801490 AATTATGGACAAATAGAAATGGTCTTATGATTGCTTTATAACTTAATATTACACGTATCGAAATT
1 AATTATGGACAAATAGAAATAATCTTATGATTGCTGTATAACTTAATATTACACATATCGAAATT
*
87801555 GAAAGTGATTCCGTGGTGGTGGTTT
66 GAAAATGATTCCGTGGTGGTGGTTT
* * * *
87801580 AATTCTGGACAAATAGAAATAATCTTATGCTTGCTGTATAGCTTAATATTACCCATATCGAAATT
1 AATTATGGACAAATAGAAATAATCTTATGATTGCTGTATAACTTAATATTACACATATCGAAATT
87801645 GAAAATGATTCC
66 GAAAATGATTCC
87801657 ATAGTAGTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 68 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (90 bp):
AATTATGGACAAATAGAAATAATCTTATGATTGCTGTATAACTTAATATTACACATATCGAAATT
GAAAATGATTCCGTGGTGGTGGTTT
Found at i:87807895 original size:43 final size:42
Alignment explanation
Indices: 87807847--87807979 Score: 144
Period size: 43 Copynumber: 3.1 Consensus size: 42
87807837 ACTTCCGAGG
87807847 TGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCAATA
1 TGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC-ATA
** * *
87807890 TGTGATTAAGTGTAAAACCATG-CTTGGGACATTGGCATCGTA
1 TGTGATTTTGTGTAAGACCATGTC-TGGGACATTGGCATCATA
* * * **
87807932 TATGA-TTTGTCTAAGACCCTGTCTGGGACAAAGGCATCGATA
1 TGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC-ATA
87807974 TGTGAT
1 TGTGAT
87807980 AGCATGTAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
41 24 0.33
42 14 0.19
43 34 0.47
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCATA
Found at i:87810194 original size:29 final size:29
Alignment explanation
Indices: 87810152--87810276 Score: 164
Period size: 29 Copynumber: 4.3 Consensus size: 29
87810142 GAAAGCATGT
87810152 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
87810181 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
87810210 ATACT-AATATGATTTGAGCCTAATGGGAC
1 ATA-TGAATGTGATTTGGGCCTAATGGGCC
* *
87810239 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
87810267 ACATGCATGT
1 ATATGAATGT
87810277 ATGTAGACTT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
28 21 0.25
29 61 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:87815427 original size:24 final size:24
Alignment explanation
Indices: 87815400--87815513 Score: 68
Period size: 24 Copynumber: 5.2 Consensus size: 24
87815390 GTGATGTGTA
87815400 TTCGGGCCTTTGTGCCTAGCAGGC
1 TTCGGGCCTTTGTGCCTAGCAGGC
* * * **
87815424 TTCGCGCC--GGTG-AT-G-AGTA
1 TTCGGGCCTTTGTGCCTAGCAGGC
87815443 TTCGGGCCTTTGTGCCTAGCAGGC
1 TTCGGGCCTTTGTGCCTAGCAGGC
* * * **
87815467 TTCGTGCC--GGTG-AT-G-AGTA
1 TTCGGGCCTTTGTGCCTAGCAGGC
87815486 TTCGGGCCTTTGTGCCTAGCAGGC
1 TTCGGGCCTTTGTGCCTAGCAGGC
87815510 TTCG
1 TTCG
87815514 TGTCGGTGAT
Statistics
Matches: 60, Mismatches: 20, Indels: 20
0.60 0.20 0.20
Matches are distributed among these distances:
19 18 0.30
20 2 0.03
21 8 0.13
22 8 0.13
23 2 0.03
24 22 0.37
ACGTcount: A:0.11, C:0.25, G:0.34, T:0.30
Consensus pattern (24 bp):
TTCGGGCCTTTGTGCCTAGCAGGC
Found at i:87815451 original size:43 final size:43
Alignment explanation
Indices: 87815347--87815597 Score: 369
Period size: 43 Copynumber: 5.9 Consensus size: 43
87815337 CATGAAACTT
*
87815347 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGTTTCGTG-C
1 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
* *
87815389 AGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGCGCC
1 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
*
87815432 GGTGATGAGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
1 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
* *
87815475 GGTGATGAGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGTC
1 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
* * * *
87815518 GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGACTCCGTACC
1 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
* * * *
87815561 AGTGTTGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTT
87815598 AATGCCAGTG
Statistics
Matches: 190, Mismatches: 18, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
42 38 0.20
43 152 0.80
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.32
Consensus pattern (43 bp):
GGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC
Found at i:87823982 original size:42 final size:42
Alignment explanation
Indices: 87823935--87824030 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
87823925 CGGCCTAGAG
* * *
87823935 ACACGGGCGTGTCTATTGGTCATGTGTGTGACATGGGCTGGC
1 ACACGGGCGTGTCTATTGGTCATGTGTGTCACACGGGCTAGC
*
87823977 ACACGGGCGTGTCTATTGGTCGTGTGTGTCACACGGGCTAGC
1 ACACGGGCGTGTCTATTGGTCATGTGTGTCACACGGGCTAGC
87824019 ACACGGGCGTGT
1 ACACGGGCGTGT
87824031 GGTTAGCCGT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.15, C:0.22, G:0.38, T:0.26
Consensus pattern (42 bp):
ACACGGGCGTGTCTATTGGTCATGTGTGTCACACGGGCTAGC
Found at i:87826647 original size:28 final size:28
Alignment explanation
Indices: 87826604--87826708 Score: 140
Period size: 28 Copynumber: 3.8 Consensus size: 28
87826594 CATAACTATA
* *
87826604 AATGTGATTGGGCCTAAT-GACCGTATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* *
87826631 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
87826660 AATGTGATTGGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* *
87826688 AAAGAGATTGGGCCTAATGGG
1 AATGTGATTGGGCCTAATGGG
87826709 ATATATACAG
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 7 0.10
28 49 0.72
29 12 0.18
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:87826699 original size:56 final size:56
Alignment explanation
Indices: 87826601--87826708 Score: 164
Period size: 56 Copynumber: 1.9 Consensus size: 56
87826591 GAGCATAACT
* * *
87826601 ATAAATGTGATTGGGCCTAATGACCGTATGAATGTGATTTGGGCCTAATGGGCCAC
1 ATAAATGTGATTGGGCCTAATGACCATATGAAAGAGATTTGGGCCTAATGGGCCAC
*
87826657 ATAAATGTGATTGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAATGGG
1 ATAAATGTGATTGGGCCTAAT-GACCATATGAAAGAGATTTGGGCCTAATGGG
87826709 ATATATACAG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
56 35 0.74
57 12 0.26
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.27
Consensus pattern (56 bp):
ATAAATGTGATTGGGCCTAATGACCATATGAAAGAGATTTGGGCCTAATGGGCCAC
Found at i:87834175 original size:16 final size:16
Alignment explanation
Indices: 87834154--87834188 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
87834144 CGAAATGCCG
87834154 AAATGCCAAAAAGATA
1 AAATGCCAAAAAGATA
* *
87834170 AAATGCCGAAAAGCTA
1 AAATGCCAAAAAGATA
87834186 AAA
1 AAA
87834189 GTTTAGGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.14, G:0.14, T:0.11
Consensus pattern (16 bp):
AAATGCCAAAAAGATA
Found at i:87834469 original size:28 final size:28
Alignment explanation
Indices: 87834399--87834514 Score: 128
Period size: 28 Copynumber: 4.1 Consensus size: 28
87834389 TGAGCATAAC
* *
87834399 TATAAATGTGATTGGGCCTAAT-GACCG
1 TATAAATGTGATTGGGCCTAATGGGCCA
*
87834426 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
* * *
87834455 CATAAATGTGATTGGGCTTAATTGGCCA
1 TATAAATGTGATTGGGCCTAATGGGCCA
* *
87834483 TATGAAA-GAGATTGGGCCTAATGGGCTA
1 TAT-AAATGTGATTGGGCCTAATGGGCCA
87834511 TATA
1 TATA
87834515 CAGGTATGTG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
27 11 0.15
28 48 0.65
29 15 0.20
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Done.