Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 277 of 310
Found at i:91194287 original size:15 final size:14
Alignment explanation
Indices: 91194212--91194283 Score: 50
Period size: 13 Copynumber: 5.4 Consensus size: 14
91194202 TTTTTAATAT
91194212 TATAATATAT-TTA
1 TATAATATATATTA
91194225 TATAATAT-TATTA
1 TATAATATATATTA
91194238 -ATAA-AT-T-TTA
1 TATAATATATATTA
91194248 TATTAATA-ATATTCA
1 TA-TAATATATATT-A
*
91194263 TATTAGGTATATATTA
1 TA-TA-ATATATATTA
91194279 TATAA
1 TATAA
91194284 GTATTCTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
10 3 0.06
11 4 0.08
12 8 0.17
13 13 0.27
14 2 0.04
15 8 0.17
16 5 0.10
17 5 0.10
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (14 bp):
TATAATATATATTA
Found at i:91194382 original size:19 final size:21
Alignment explanation
Indices: 91194347--91194389 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
91194337 TCTTAATATC
91194347 ATACTTTTATTGTTATG-TAT
1 ATACTTTTATTGTTATGTTAT
91194367 ATAC-TTTATATG-TATGTTAT
1 ATACTTTTAT-TGTTATGTTAT
91194387 ATA
1 ATA
91194390 TGTTATGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (21 bp):
ATACTTTTATTGTTATGTTAT
Found at i:91194404 original size:15 final size:15
Alignment explanation
Indices: 91194373--91194419 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
91194363 GTATATACTT
91194373 TATATG-TATGT-TA
1 TATATGTTATGTATA
91194386 TATATGTTATGTATA
1 TATATGTTATGTATA
91194401 TATATGGTTA-GTAT-
1 TATAT-GTTATGTATA
91194415 TATAT
1 TATAT
91194420 TTCTATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.19
14 10 0.32
15 11 0.35
16 4 0.13
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (15 bp):
TATATGTTATGTATA
Found at i:91194680 original size:29 final size:28
Alignment explanation
Indices: 91194646--91194736 Score: 75
Period size: 28 Copynumber: 3.3 Consensus size: 28
91194636 ATATAAGCTA
91194646 TGTATATA-CCTTTAATACCATATTATT
1 TGTATATATCCTTTAATACCATATTATT
* * *
91194673 TGTATATATTCTTAAATACCAT-TACATT
1 TGTATATATCCTTTAATACCATAT-TATT
* *
91194701 TATATA-ATTCCTTTTAATACCACATTA--
1 TGTATATA-TCC-TTTAATACCATATTATT
91194728 TGTATATAT
1 TGTATATAT
91194737 TATGCTTTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
27 16 0.33
28 22 0.45
29 10 0.20
30 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.47
Consensus pattern (28 bp):
TGTATATATCCTTTAATACCATATTATT
Found at i:91196362 original size:18 final size:20
Alignment explanation
Indices: 91196339--91196378 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
91196329 AATATACTAC
*
91196339 TATAATTAAA-ATATAG-AT
1 TATAATAAAAGATATAGTAT
91196357 TATAATAAAAGATATAGTAT
1 TATAATAAAAGATATAGTAT
91196377 TA
1 TA
91196379 CATGATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 6 0.32
20 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (20 bp):
TATAATAAAAGATATAGTAT
Found at i:91200124 original size:5 final size:5
Alignment explanation
Indices: 91200114--91200186 Score: 60
Period size: 5 Copynumber: 13.8 Consensus size: 5
91200104 AATATTTAAC
* *
91200114 TAAAA TAAAA TAAAA TAAAA TAATAA -ATAA TAAAA TAAAA GAAAGA -AAAA
1 TAAAA TAAAA TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA TAAA-A TAAAA
91200164 TAATAAA TAAAAA TAAAAA TAAA
1 T-A-AAA T-AAAA T-AAAA TAAA
91200187 GATTGGGTTG
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
4 3 0.05
5 36 0.61
6 14 0.24
7 6 0.10
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:91200148 original size:30 final size:29
Alignment explanation
Indices: 91200114--91200188 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 29
91200104 AATATTTAAC
*
91200114 TAAA-ATAAAATAAAAT-AA-AATAATAA
1 TAAATATAAAATAAAATAAAGAAAAATAA
* *
91200140 -ATA-ATAAAATAAAAGAAAGAAAAATAA
1 TAAATATAAAATAAAATAAAGAAAAATAA
91200167 TAAATA-AAAATAAAAATAAAGA
1 TAAATATAAAAT-AAAATAAAGA
91200189 TTGGGTTGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 13 0.33
26 2 0.05
27 7 0.18
28 7 0.18
29 10 0.26
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (29 bp):
TAAATATAAAATAAAATAAAGAAAAATAA
Found at i:91204427 original size:31 final size:31
Alignment explanation
Indices: 91204389--91204449 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
91204379 GGTCCCTCCA
*
91204389 TCCTGGGTTGTAGGTATTGGCGTAAGGGTCG
1 TCCTGGGTTGCAGGTATTGGCGTAAGGGTCG
91204420 TCCTGGGTTGCAGGTATTGGCGTAAGGGTC
1 TCCTGGGTTGCAGGTATTGGCGTAAGGGTC
91204450 ATATCGTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.13, C:0.15, G:0.41, T:0.31
Consensus pattern (31 bp):
TCCTGGGTTGCAGGTATTGGCGTAAGGGTCG
Found at i:91205477 original size:26 final size:26
Alignment explanation
Indices: 91205440--91205497 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
91205430 TGATACAAAT
91205440 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91205466 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91205492 TGATAA
1 TGATAA
91205498 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:91207011 original size:26 final size:26
Alignment explanation
Indices: 91206982--91207034 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
91206972 TTTACAGTTT
*
91206982 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
91207008 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
91207034 T
1 T
91207035 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:91210456 original size:26 final size:24
Alignment explanation
Indices: 91210403--91210479 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 24
91210393 ATAGCAATAG
*
91210403 TAATAATA-TAATAATAAAGTAAAA
1 TAATAATAGTAATAATTAA-TAAAA
91210427 -AATAATAGTAATACATTAATAAGAA
1 TAATAATAGTAATA-ATTAATAA-AA
91210452 TAATAATAGT-AT-ATTAATAACAA
1 TAATAATAGTAATAATTAATAA-AA
91210475 TAATA
1 TAATA
91210480 GAAAATAATG
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
23 22 0.47
24 8 0.17
25 8 0.17
26 9 0.19
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (24 bp):
TAATAATAGTAATAATTAATAAAA
Found at i:91210665 original size:3 final size:3
Alignment explanation
Indices: 91210398--91210635 Score: 59
Period size: 3 Copynumber: 79.7 Consensus size: 3
91210388 TGATGATAGC
* * *
91210398 AAT AGT AAT AAT -AT AAT AAT AA- AGT AA- AA- AAT AAT AGT AAT ACATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T
* * * * *
91210444 AAT AAG AAT AAT AAT AGT -AT ATT AAT AAC AAT AAT AGAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
** * * * * *
91210489 GACG AGAT AGT AAT AAT AAT AAT AA- ACT AA- AGAGT ACT AAT AGT ACT
1 -AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT
* * * * *
91210536 AAC AAT AAT -AT AAAT AAT AAT GAA- AAC AAC AAG AGA- AAT AAT AAC
1 AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * **
91210581 AAT AA- CAG AAT AAA AAT AAT GAT AAT AAT AAT AGC AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91210627 AATT AAT AA
1 AA-T AAT AA
91210636 ATAAATATAA
Statistics
Matches: 168, Mismatches: 45, Indels: 44
0.65 0.18 0.17
Matches are distributed among these distances:
2 18 0.11
3 134 0.80
4 13 0.08
5 3 0.02
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:91211316 original size:22 final size:22
Alignment explanation
Indices: 91211291--91211349 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
91211281 TTACAAACGG
*
91211291 TTCTCCCTTAAAATACGATCGA
1 TTCTCCCTTAAAATACCATCGA
*
91211313 TTCTTCCC-CAAAATACCATCGA
1 TTC-TCCCTTAAAATACCATCGA
* *
91211335 TCCCCCCTTACAAAT
1 TTCTCCCTTA-AAAT
91211350 GATAGATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.10
22 18 0.62
23 8 0.28
ACGTcount: A:0.31, C:0.36, G:0.05, T:0.29
Consensus pattern (22 bp):
TTCTCCCTTAAAATACCATCGA
Found at i:91217467 original size:13 final size:13
Alignment explanation
Indices: 91217449--91217482 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91217439 TTATTTTCCC
*
91217449 TTTCATTTATTAT
1 TTTCATCTATTAT
91217462 TTTCATCTATTAT
1 TTTCATCTATTAT
*
91217475 TTACATCT
1 TTTCATCT
91217483 TGCTATTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTCATCTATTAT
Found at i:91227322 original size:83 final size:84
Alignment explanation
Indices: 91227158--91227314 Score: 253
Period size: 83 Copynumber: 1.9 Consensus size: 84
91227148 AATCTGATTC
* ** *
91227158 CTCTTCAAAAATGAAAAAGTTTCAATTTAGTCATCTTATAAATAGAGAAATTATAAATTAATATA
1 CTCTTCAAAAATGAAAAAGTTTCAATTCAAACATCTTATAAATAAAGAAATTATAAATTAATATA
*
91227223 TAGTGAAATAGAACTTTGG
66 TAGTAAAATAGAACTTTGG
*
91227242 CTCTTC-AAAATGAAAAATTTTCAATTCAAACATCTTATAAATAAAGAAATTATAAATTAATATA
1 CTCTTCAAAAATGAAAAAGTTTCAATTCAAACATCTTATAAATAAAGAAATTATAAATTAATATA
91227306 TAGTAAAAT
66 TAGTAAAAT
91227315 TACACTTTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 61 0.91
84 6 0.09
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.34
Consensus pattern (84 bp):
CTCTTCAAAAATGAAAAAGTTTCAATTCAAACATCTTATAAATAAAGAAATTATAAATTAATATA
TAGTAAAATAGAACTTTGG
Found at i:91228147 original size:47 final size:47
Alignment explanation
Indices: 91228096--91228261 Score: 181
Period size: 47 Copynumber: 3.5 Consensus size: 47
91228086 TCTACCAGAT
* * * *
91228096 AATACTCTAATAACTCACGTCTTATTTTAATCCCACATTCACTAAAG
1 AATACTTTAATAGCTTACATCTTATTTTAATCCCACATTCACTAAAG
* * * * * *
91228143 AATACTTCAATAGCTTACTTCTTTACTATTAATCTCACA-TCTACTAGAT
1 AATACTTTAATAGCTTACATC-TTA-TTTTAATCCCACATTC-ACTAAAG
* *
91228192 CATACTTTAATAGCTTACATTTTATTTTAATCCCACATTCACTAAAG
1 AATACTTTAATAGCTTACATCTTATTTTAATCCCACATTCACTAAAG
*
91228239 AATACTTTAATAGCTTACTTCTT
1 AATACTTTAATAGCTTACATCTT
91228262 TACTATTTTT
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
47 52 0.55
48 10 0.11
49 33 0.35
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.40
Consensus pattern (47 bp):
AATACTTTAATAGCTTACATCTTATTTTAATCCCACATTCACTAAAG
Found at i:91228182 original size:49 final size:49
Alignment explanation
Indices: 91228122--91228268 Score: 201
Period size: 49 Copynumber: 3.0 Consensus size: 49
91228112 ACGTCTTATT
*
91228122 TTAATCCCACATTCACTAAAGAATACTTCAATAGCTTACTTCTTTACTA
1 TTAATCCCACATTCACTAAAGAATACTTTAATAGCTTACTTCTTTACTA
* * ** * *
91228171 TTAATCTCACA-TCTACTAGATCATACTTTAATAGCTTACAT-TTTA-TT
1 TTAATCCCACATTC-ACTAAAGAATACTTTAATAGCTTACTTCTTTACTA
91228218 TTAATCCCACATTCACTAAAGAATACTTTAATAGCTTACTTCTTTACTA
1 TTAATCCCACATTCACTAAAGAATACTTTAATAGCTTACTTCTTTACTA
91228267 TT
1 TT
91228269 TTTATTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
47 34 0.42
48 12 0.15
49 35 0.43
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (49 bp):
TTAATCCCACATTCACTAAAGAATACTTTAATAGCTTACTTCTTTACTA
Found at i:91228239 original size:96 final size:96
Alignment explanation
Indices: 91228082--91228268 Score: 302
Period size: 96 Copynumber: 1.9 Consensus size: 96
91228072 ATTTTAATTC
*
91228082 CACATCTACCAGATAATACTCTAATAACTCACGTCTTATTTTAATCCCACATTCACTAAAGAATA
1 CACATCTACCAGATAATACTCTAATAACTCACATCTTATTTTAATCCCACATTCACTAAAGAATA
91228147 CTTCAATAGCTTACTTCTTTACTATTAATCT
66 CTTCAATAGCTTACTTCTTTACTATTAATCT
* * * * * *
91228178 CACATCTACTAGATCATACTTTAATAGCTTACATTTTATTTTAATCCCACATTCACTAAAGAATA
1 CACATCTACCAGATAATACTCTAATAACTCACATCTTATTTTAATCCCACATTCACTAAAGAATA
*
91228243 CTTTAATAGCTTACTTCTTTACTATT
66 CTTCAATAGCTTACTTCTTTACTATT
91228269 TTTATTAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.39
Consensus pattern (96 bp):
CACATCTACCAGATAATACTCTAATAACTCACATCTTATTTTAATCCCACATTCACTAAAGAATA
CTTCAATAGCTTACTTCTTTACTATTAATCT
Found at i:91228867 original size:15 final size:16
Alignment explanation
Indices: 91228841--91228870 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
91228831 AATTATTTTA
91228841 ATTTATTTATTAAATG
1 ATTTATTTATTAAATG
91228857 ATTTA-TTATTAAAT
1 ATTTATTTATTAAAT
91228871 TCAAAATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
ATTTATTTATTAAATG
Found at i:91235099 original size:22 final size:22
Alignment explanation
Indices: 91235071--91235116 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
91235061 AATTGATTTA
91235071 TTCTTTAAGTGATACGCCATTG
1 TTCTTTAAGTGATACGCCATTG
91235093 TTCTTTAAGTGATACGCCATTG
1 TTCTTTAAGTGATACGCCATTG
91235115 TT
1 TT
91235117 GTTCTGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (22 bp):
TTCTTTAAGTGATACGCCATTG
Found at i:91235322 original size:30 final size:30
Alignment explanation
Indices: 91235237--91235322 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
91235227 TTGAGGGGAT
* *
91235237 TTAATGAGAATTTTCAAAAGTTTTGGTAGGC
1 TTAATGAGAATTTT-AAAAATTTTTGTAGGC
* * * *
91235268 CTAATTAGAACTTTAGCAAA-TTTTGTAGGC
1 TTAATGAGAATTTTA-AAAATTTTTGTAGGC
*
91235298 TTAATGAGAGTTTTAAAAATTTTTG
1 TTAATGAGAATTTTAAAAATTTTTG
91235323 AAAACCTTCA
Statistics
Matches: 42, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
29 3 0.07
30 26 0.62
31 13 0.31
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.41
Consensus pattern (30 bp):
TTAATGAGAATTTTAAAAATTTTTGTAGGC
Found at i:91235734 original size:22 final size:22
Alignment explanation
Indices: 91235709--91235756 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
91235699 CCAGCAAACC
91235709 TACCCCCACTACAACAGCCCCA
1 TACCCCCACTACAACAGCCCCA
* *
91235731 TACCTCCACTACAACAGTCCCA
1 TACCCCCACTACAACAGCCCCA
91235753 TACC
1 TACC
91235757 GTCTGACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.50, G:0.04, T:0.15
Consensus pattern (22 bp):
TACCCCCACTACAACAGCCCCA
Found at i:91236872 original size:16 final size:16
Alignment explanation
Indices: 91236853--91236883 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91236843 TATTGTTATC
*
91236853 TATTTATTTATATTTA
1 TATTTATTTAAATTTA
91236869 TATTTATTTAAATTT
1 TATTTATTTAAATTT
91236884 TCGGTACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTATTTAAATTTA
Found at i:91238453 original size:22 final size:22
Alignment explanation
Indices: 91238422--91238467 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
91238412 TTAAAATATA
*
91238422 TAAAAGTATTAAAATGAAGCTT
1 TAAAAATATTAAAATGAAGCTT
*
91238444 TAAAAATATTTAAATGAAGCTT
1 TAAAAATATTAAAATGAAGCTT
91238466 TA
1 TA
91238468 GTTGAGTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (22 bp):
TAAAAATATTAAAATGAAGCTT
Found at i:91257332 original size:3 final size:3
Alignment explanation
Indices: 91257321--91257350 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
91257311 AAAAAAAAAA
91257321 AAG AGAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG A-AG AAG AAG AAG AAG AAG AAG AAG AA
91257351 AAGGCTTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:91258874 original size:119 final size:119
Alignment explanation
Indices: 91258726--91258960 Score: 434
Period size: 119 Copynumber: 2.0 Consensus size: 119
91258716 TTGAAAAATG
*
91258726 AGGAATAGTTAAAGTACCAAGTTGCATATTAACCCATAAAAAAATGGGGTAAATAAGTCAAAACC
1 AGGAATAGTTAAAGTACCAAGTTGCATATTAACCCATAAAAAAATGGGGCAAATAAGTCAAAACC
*
91258791 GAAAACCCTCCATTTAGGTTTGGTTATTGTATAGCCTACACTACAGTGCAAACT
66 AAAAACCCTCCATTTAGGTTTGGTTATTGTATAGCCTACACTACAGTGCAAACT
*
91258845 AGGAATAGTTAAAGTACCAAGTTGCATATTAACCCATAAAAAAATGGGGCAAATAAGTCAAAACT
1 AGGAATAGTTAAAGTACCAAGTTGCATATTAACCCATAAAAAAATGGGGCAAATAAGTCAAAACC
*
91258910 AAAAACCCTTCATTTAGGTTTGGTTATTGTATAGCCTACACTACAGTGCAA
66 AAAAACCCTCCATTTAGGTTTGGTTATTGTATAGCCTACACTACAGTGCAA
91258961 GCTATCTCCT
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 112 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (119 bp):
AGGAATAGTTAAAGTACCAAGTTGCATATTAACCCATAAAAAAATGGGGCAAATAAGTCAAAACC
AAAAACCCTCCATTTAGGTTTGGTTATTGTATAGCCTACACTACAGTGCAAACT
Found at i:91264768 original size:29 final size:31
Alignment explanation
Indices: 91264707--91264769 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
91264697 AAAATTATAT
*
91264707 ATGAATTTTGATTTAATGTTCAATTTGATAC
1 ATGAATTTTGATTTAATGTTCAATTTGACAC
*
91264738 ATGAATTTT-ATTT-TTGTTCAATTAT-ACAC
1 ATGAATTTTGATTTAATGTTCAATT-TGACAC
91264767 ATG
1 ATG
91264770 GTATTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 15 0.52
30 5 0.17
31 9 0.31
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.49
Consensus pattern (31 bp):
ATGAATTTTGATTTAATGTTCAATTTGACAC
Found at i:91277826 original size:32 final size:32
Alignment explanation
Indices: 91277787--91277854 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
91277777 GTTAAATTTC
* * *
91277787 TAATTAATACTAATTTTTTCAAGGCTTTGTAT
1 TAATTAATACTAATATATTCAAGGATTTGTAT
*
91277819 TAATTAATCCTAATATATTCAAGGATTTGTAT
1 TAATTAATACTAATATATTCAAGGATTTGTAT
91277851 TAAT
1 TAAT
91277855 CGACCTCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (32 bp):
TAATTAATACTAATATATTCAAGGATTTGTAT
Found at i:91279546 original size:23 final size:23
Alignment explanation
Indices: 91279515--91279558 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
91279505 AAACTATTAG
91279515 GAACAAAATCGTGAAATCCTTTA
1 GAACAAAATCGTGAAATCCTTTA
*
91279538 GAACCAAATCGTGAAATCCTT
1 GAACAAAATCGTGAAATCCTT
91279559 AATCTTTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (23 bp):
GAACAAAATCGTGAAATCCTTTA
Found at i:91280548 original size:22 final size:22
Alignment explanation
Indices: 91280518--91280559 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
91280508 TAAGCATATG
*
91280518 ATTTGGATAAATGTACTTTACA
1 ATTTCGATAAATGTACTTTACA
91280540 ATTTCGATAAATGTACTTTA
1 ATTTCGATAAATGTACTTTA
91280560 TAAAAGCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (22 bp):
ATTTCGATAAATGTACTTTACA
Found at i:91281642 original size:40 final size:40
Alignment explanation
Indices: 91281589--91281669 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
91281579 GGAAAAAAGT
*
91281589 AAGCTTTCTTGTAGGTATCAATGTGATAATATTCATGCAA
1 AAGCTTTCTTGTAGGTATCAATGTAATAATATTCATGCAA
91281629 AAGCTTTCTTGTAGGTATCAATGTAATAATATTCATGCAA
1 AAGCTTTCTTGTAGGTATCAATGTAATAATATTCATGCAA
91281669 A
1 A
91281670 TATTCATCTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (40 bp):
AAGCTTTCTTGTAGGTATCAATGTAATAATATTCATGCAA
Found at i:91283457 original size:51 final size:51
Alignment explanation
Indices: 91283378--91283530 Score: 225
Period size: 51 Copynumber: 3.0 Consensus size: 51
91283368 CTACGTGTAG
* * * *
91283378 CAGCAACATTATCTAGTCCATCTAATGTTGCAAAGTCACCAGCATATTCAT
1 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
* * *
91283429 CAGCAACATTATCCACTCTATCTGATGTTACAAAATCACCAACATATTCAT
1 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
* *
91283480 CAGCAACATTATCCACTCCATCTGATGTTGTAAAATCACTAGCATATTCAT
1 CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
91283531 TACCAGCAAC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 90 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (51 bp):
CAGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
Found at i:91283695 original size:33 final size:33
Alignment explanation
Indices: 91283658--91283727 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
91283648 CATCAGCTTG
* *
91283658 TACCTTTCCTACATCACCCTCCTCACCAGATTC
1 TACCTTTCCTAAATCACCCTCATCACCAGATTC
* * *
91283691 TACCTTTTCTAAATCACCTTCATCATCAGATTC
1 TACCTTTCCTAAATCACCCTCATCACCAGATTC
91283724 TACC
1 TACC
91283728 ACTTTATCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.39, G:0.03, T:0.34
Consensus pattern (33 bp):
TACCTTTCCTAAATCACCCTCATCACCAGATTC
Found at i:91284811 original size:18 final size:16
Alignment explanation
Indices: 91284768--91284803 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
91284758 GAATGCTATC
* *
91284768 GATTTAGGTATTTGAA
1 GATTTAGGGACTTGAA
91284784 GATTTAGGGACTTGAA
1 GATTTAGGGACTTGAA
91284800 GATT
1 GATT
91284804 GTTAGGGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.39
Consensus pattern (16 bp):
GATTTAGGGACTTGAA
Found at i:91286136 original size:318 final size:321
Alignment explanation
Indices: 91285556--91286166 Score: 953
Period size: 318 Copynumber: 1.9 Consensus size: 321
91285546 CCTAACATCT
91285556 TGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
1 TGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
* * *
91285621 CAGCCACACAAAGAAAAAAAATTTTACCTTCATTTTCGCAACCTCTGTTTTTAGGCTCTGTTCCT
66 CAGCCACAC--AGAAAAAAAATTTTACCTTCATTTCCACAACCTCTGTTTCTAGGCTCTGTTCCT
* * *
91285686 TTGGGCCTACTTATAGTTTAAAAAAGAACCCAAAACGCAAGTCGTTTTGTTTCCTAAATCGTTGC
129 TTGGGCCAACTTATAGTTTAAAAAAGAACCCAAAACGCAAGTCGTTTCGTTTCCTAAACCGTTGC
91285751 TACGAACTACACAAATTCTAAAAAACCATCGACTTGAAAAAAACGTATTCTTGTTTTCCGCTTTT
194 TACGAACTACACAAATTCTAAAAAACCATCGACTT-AAAAAAACGTATTCTTGTTTTCCGCTTTT
91285816 CAG-CTTT-GTCATTTTTCC-CCTTGAGATCTAGTGATTATGGATTTGGCTACGATGAATATCC
258 CAGTCTTTCGTCATTTTTCCTCCTTGAGATCTAGTGATTATGGATTTGGCTACGATGAATATCC
91285877 TGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
1 TGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
* * * **
91285942 CAGCCACAC-TAATAAATATTTTTTCTTCATTTCCACAACCTCTGTTTCTAGGCTCTGTTCCTTT
66 CAGCCACACAGAAAAAAAATTTTACCTTCATTTCCACAACCTCTGTTTCTAGGCTCTGTTCCTTT
* * *
91286006 GGGCCAACTTCTTGTTTAAAAAAGAACCCAAAATGCAAGTCGTTTCGTTTCCTAAAACCGTTGCT
131 GGGCCAACTTATAGTTTAAAAAAGAACCCAAAACGCAAGTCGTTTCGTTTCCT-AAACCGTTGCT
* * * * *
91286071 ACGAACTACACAAATTCTGAAAAACCATTGACTT-CAAAAACGTTTTTTTTGTTTTCCGCTTTTC
195 ACGAACTACACAAATTCTAAAAAACCATCGACTTAAAAAAACG-TATTCTTGTTTTCCGCTTTTC
* *
91286135 AGTTTTTCGTCATTTTTCCTCCTTGATATCTA
259 AGTCTTTCGTCATTTTTCCTCCTTGAGATCTA
91286167 CTCATTGTTT
Statistics
Matches: 264, Mismatches: 21, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
317 7 0.03
318 116 0.44
319 45 0.17
320 11 0.04
321 85 0.32
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (321 bp):
TGTGGCTGTAGTTTAGTGGTAAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
CAGCCACACAGAAAAAAAATTTTACCTTCATTTCCACAACCTCTGTTTCTAGGCTCTGTTCCTTT
GGGCCAACTTATAGTTTAAAAAAGAACCCAAAACGCAAGTCGTTTCGTTTCCTAAACCGTTGCTA
CGAACTACACAAATTCTAAAAAACCATCGACTTAAAAAAACGTATTCTTGTTTTCCGCTTTTCAG
TCTTTCGTCATTTTTCCTCCTTGAGATCTAGTGATTATGGATTTGGCTACGATGAATATCC
Found at i:91287715 original size:124 final size:128
Alignment explanation
Indices: 91287492--91287816 Score: 442
Period size: 124 Copynumber: 2.5 Consensus size: 128
91287482 TGTAAAACCG
*
91287492 TGTGTAAATGGTTCTCAAAGCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATT
1 TGTGTAAATAGTTCTCAAAGCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATT
* * *
91287557 TTAGACCTGAATAAACGAATGACGGCCCTCTTAGTTTACTGATAA-ACTGCTA-ATG-GT-AA
66 TTAGACCCGAATAAACGAATGACAGCCCTCTTAGTTTACTGATAATACTGATACATGTGTAAA
* *
91287616 TGTGTAAATAGTTCTCAAAGCATGAGCTAGTTGATATGAATAGAAATGGATGAAATGAAGTAATT
1 TGTGTAAATAGTTCTCAAAGCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATT
* * * *
91287681 TTGGACCCGAATAAACGAATGACATCCCTTTTAGTTTACTGATAATTTCTGATACTATGTGTAAA
66 TTAGACCCGAATAAACGAATGACAGCCCTCTTAGTTTACTGATAA-TACTGATAC-ATGTGT---
91287746 ACAA
126 A-AA
* * * *
91287750 TGTGTAAATAGTTCTCGAACCATGAGCTAATTAATATGAATAGAGTTGGATGAAATGAAGTAATT
1 TGTGTAAATAGTTCTCAAAGCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATT
91287815 TT
66 TT
91287817 TAGTGTTGAA
Statistics
Matches: 175, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
124 102 0.58
126 5 0.03
128 3 0.02
129 2 0.01
134 63 0.36
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (128 bp):
TGTGTAAATAGTTCTCAAAGCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATT
TTAGACCCGAATAAACGAATGACAGCCCTCTTAGTTTACTGATAATACTGATACATGTGTAAA
Found at i:91290815 original size:2 final size:2
Alignment explanation
Indices: 91290810--91290852 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
91290800 CAAAAATATT
91290810 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
91290852 T
1 T
91290853 TTTTAAACCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:91292560 original size:29 final size:31
Alignment explanation
Indices: 91292498--91292565 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 31
91292488 AGTTTTATAC
* *
91292498 ATACATTTGAACCACAATCAAAGTTTCACGT
1 ATACAATTGCACCACAATCAAAGTTTCACGT
* * *
91292529 ATATAATTGCACCA-AATTAAAG-TTCATGT
1 ATACAATTGCACCACAATCAAAGTTTCACGT
91292558 ATACAATT
1 ATACAATT
91292566 ACACATTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 13 0.42
30 7 0.23
31 11 0.35
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (31 bp):
ATACAATTGCACCACAATCAAAGTTTCACGT
Found at i:91292968 original size:29 final size:29
Alignment explanation
Indices: 91292926--91292984 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
91292916 AATATAAGAG
91292926 ATAAATAACTAAAGTTTAGGCTTAGGACC
1 ATAAATAACTAAAGTTTAGGCTTAGGACC
91292955 ATAAATAACTAAAGTTTAGGCTTAGGACC
1 ATAAATAACTAAAGTTTAGGCTTAGGACC
91292984 A
1 A
91292985 AAGTTAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (29 bp):
ATAAATAACTAAAGTTTAGGCTTAGGACC
Found at i:91302416 original size:19 final size:18
Alignment explanation
Indices: 91302363--91302423 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
91302353 ATCAACAAGT
* *
91302363 AATTTAAAATTTATAAAAA
1 AATTCAAAA-TTAAAAAAA
* *
91302382 TATTCAAAAAATAAAAAAA
1 AATTC-AAAATTAAAAAAA
*
91302401 AATTCAAAATTCAAAAAAT
1 AATTCAAAATT-AAAAAAA
91302420 AATT
1 AATT
91302424 ATAAAAAAGT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
18 5 0.15
19 24 0.73
20 4 0.12
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
AATTCAAAATTAAAAAAA
Found at i:91302437 original size:30 final size:26
Alignment explanation
Indices: 91302383--91302439 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 26
91302373 TTATAAAAAT
91302383 ATTCAAAAAATAAAAAAAAATTCAAA
1 ATTCAAAAAATAAAAAAAAATTCAAA
91302409 ATTCAAAAAATAATTATAAAAAAGTTCAAA
1 ATTCAAAAAATAA--A-AAAAAA-TTCAAA
91302439 A
1 A
91302440 ACTAGCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 13 0.48
28 1 0.04
29 6 0.22
30 7 0.26
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.23
Consensus pattern (26 bp):
ATTCAAAAAATAAAAAAAAATTCAAA
Found at i:91308213 original size:21 final size:20
Alignment explanation
Indices: 91308187--91308226 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
91308177 TTAATTGATA
* *
91308187 AATCAATATAAATTAAAAATT
1 AATCAAAAT-AATGAAAAATT
91308208 AATCAAAATAATGAAAAAT
1 AATCAAAATAATGAAAAAT
91308227 AATATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (20 bp):
AATCAAAATAATGAAAAATT
Found at i:91308238 original size:20 final size:21
Alignment explanation
Indices: 91308215--91308254 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
91308205 ATTAATCAAA
*
91308215 ATAATGAAAAAT-AATATTAT
1 ATAACGAAAAATAAATATTAT
91308235 ATAACGAAAAATAAATATTA
1 ATAACGAAAAATAAATATTA
91308255 GATTTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (21 bp):
ATAACGAAAAATAAATATTAT
Found at i:91309339 original size:16 final size:16
Alignment explanation
Indices: 91309318--91309349 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
91309308 TCAGTAATAC
91309318 GATAAAAAATTTATAT
1 GATAAAAAATTTATAT
91309334 GATAAAAAATTTATAT
1 GATAAAAAATTTATAT
91309350 TTCTGTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (16 bp):
GATAAAAAATTTATAT
Found at i:91309918 original size:12 final size:13
Alignment explanation
Indices: 91309890--91309938 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
91309880 TCGAGTCCGT
91309890 AGATATTAAATAG
1 AGATATTAAATAG
*
91309903 AGATATTTAA-AG
1 AGATATTAAATAG
* *
91309915 AGATATTATATTG
1 AGATATTAAATAG
*
91309928 ATATATTAAAT
1 AGATATTAAAT
91309939 TTTGATTAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (13 bp):
AGATATTAAATAG
Found at i:91315063 original size:19 final size:19
Alignment explanation
Indices: 91315026--91315065 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
91315016 ATATTATAAA
*
91315026 ATTTATTTAAATCTTAATT
1 ATTTATTTAAATCTAAATT
91315045 ATTTATTTTAAAT-TAAATT
1 ATTTA-TTTAAATCTAAATT
91315064 AT
1 AT
91315066 GATTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTATTTAAATCTAAATT
Found at i:91315197 original size:7 final size:7
Alignment explanation
Indices: 91315182--91315211 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
91315172 AAATAATTTA
*
91315182 AAATAAT
1 AAATTAT
91315189 AAATTAT
1 AAATTAT
91315196 AAATTAT
1 AAATTAT
91315203 AAATTAT
1 AAATTAT
91315210 AA
1 AA
91315212 TATAATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
AAATTAT
Found at i:91315199 original size:14 final size:14
Alignment explanation
Indices: 91315173--91315223 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
91315163 ACGAAATTTA
*
91315173 AATAATTTA-AAAT
1 AATAAATTATAAAT
91315186 AATAAATTATAAAT
1 AATAAATTATAAAT
*
91315200 TATAAATTATAATAT
1 AATAAATTATAA-AT
91315215 AATATAATT
1 AATA-AATT
91315224 TTTATATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 8 0.25
14 15 0.47
15 5 0.16
16 4 0.12
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATAAATTATAAAT
Found at i:91317984 original size:12 final size:13
Alignment explanation
Indices: 91317967--91318005 Score: 64
Period size: 12 Copynumber: 3.2 Consensus size: 13
91317957 TGTCTATACG
91317967 TATATAATAA-AA
1 TATATAATAATAA
91317979 TATATAATAATAA
1 TATATAATAATAA
91317992 TA-ATAATAATAA
1 TATATAATAATAA
91318004 TA
1 TA
91318006 AGGATAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TATATAATAATAA
Found at i:91317988 original size:3 final size:3
Alignment explanation
Indices: 91317970--91318006 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
91317960 CTATACGTAT
91317970 ATA ATA A-A ATA TATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA A
91318007 GGATAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:91319725 original size:38 final size:40
Alignment explanation
Indices: 91319676--91319763 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 40
91319666 AAAATTATAC
* * *
91319676 TTAATACAATAAAATA-TTTATTATATTTAT-TAGTGTTT
1 TTAATATAATAAAACATTTTATTATATCTATGTAGTGTTT
*
91319714 TTAATATAATAAAACATTTTATTATATCTATGGTAGTTTTT
1 TTAATATAATAAAACATTTTATTATATCTAT-GTAGTGTTT
91319755 TTAATATAA
1 TTAATATAA
91319764 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 14 0.33
39 13 0.30
41 16 0.37
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (40 bp):
TTAATATAATAAAACATTTTATTATATCTATGTAGTGTTT
Found at i:91322102 original size:3 final size:3
Alignment explanation
Indices: 91322096--91322138 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
91322086 CTCTATTTTT
* *
91322096 TTA TTA TTA TTA TTA CTA -TA TTTA TCA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T
91322139 ATTTATACTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.89
4 2 0.06
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:91322144 original size:12 final size:12
Alignment explanation
Indices: 91322096--91322161 Score: 59
Period size: 12 Copynumber: 5.6 Consensus size: 12
91322086 CTCTATTTTT
91322096 TTATTAT-TATTA
1 TTATTATAT-TTA
*
91322108 TTACTATATTTA
1 TTATTATATTTA
*
91322120 TCATTAT-TATTA
1 TTATTATAT-TTA
91322132 TTATTATATTTA
1 TTATTATATTTA
91322144 -TACTTATATTTA
1 TTA-TTATATTTA
91322156 TT-TTAT
1 TTATTAT
91322162 TCTAATGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
11 7 0.16
12 35 0.78
13 3 0.07
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTATATTTA
Found at i:91322157 original size:24 final size:24
Alignment explanation
Indices: 91322098--91322144 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
91322088 CTATTTTTTT
*
91322098 ATTATTATTATTACTATATTTATC
1 ATTATTATTATTATTATATTTATC
91322122 ATTATTATTATTATTATATTTAT
1 ATTATTATTATTATTATATTTAT
91322145 ACTTATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTATTATTATTATTATATTTATC
Found at i:91324987 original size:18 final size:18
Alignment explanation
Indices: 91324960--91325004 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
91324950 CTGTATTTAC
91324960 TTAT-ATTATGACTAATA
1 TTATCATTATGACTAATA
* *
91324977 TTATCATTATGATTACTA
1 TTATCATTATGACTAATA
*
91324995 TTGTCATTAT
1 TTATCATTAT
91325005 TATTTGTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.51
Consensus pattern (18 bp):
TTATCATTATGACTAATA
Found at i:91325008 original size:3 final size:3
Alignment explanation
Indices: 91324975--91325057 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
91324965 TTATGACTAA
* * * * * *
91324975 TAT TAT CAT TAT GAT TAC TAT TGT CAT TAT TATT TGT TACCT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA--T TAT TAT
* * *
91325023 TAC TAT TAT TAC TAC TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
91325058 ATTTTACCCA
Statistics
Matches: 60, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
2 2 0.03
3 53 0.88
4 2 0.03
5 3 0.05
ACGTcount: A:0.30, C:0.10, G:0.04, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:91325031 original size:9 final size:9
Alignment explanation
Indices: 91325017--91325057 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
91325007 TTTGTTACCT
91325017 TATTATTAC
1 TATTATTAC
91325026 TATTATTAC
1 TATTATTAC
*
91325035 TACTATTA-
1 TATTATTAC
*
91325043 TATTATTAT
1 TATTATTAC
91325052 TATTAT
1 TATTAT
91325058 ATTTTACCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.24
9 22 0.76
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTATTAC
Found at i:91330652 original size:20 final size:21
Alignment explanation
Indices: 91330615--91330653 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91330605 TTTTTGAAAA
*
91330615 TTTTAAAAATATTTATATTAT
1 TTTTAAAAATATTAATATTAT
*
91330636 TTTTAATAAT-TTAATATT
1 TTTTAAAAATATTAATATT
91330654 TTTCATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAAAAATATTAATATTAT
Found at i:91331313 original size:38 final size:38
Alignment explanation
Indices: 91331271--91331347 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
91331261 TTCTATTCAA
91331271 ATCTCTACAACATTTTTCCACTTCTTCCATGGGAGACG
1 ATCTCTACAACATTTTTCCACTTCTTCCATGGGAGACG
91331309 ATCTCTACAACATTTTTCCACTTCTTCCATGGGAGACG
1 ATCTCTACAACATTTTTCCACTTCTTCCATGGGAGACG
91331347 A
1 A
91331348 CGATGCTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (38 bp):
ATCTCTACAACATTTTTCCACTTCTTCCATGGGAGACG
Found at i:91335344 original size:18 final size:18
Alignment explanation
Indices: 91335321--91335355 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
91335311 TTCTTATTAT
91335321 TAAT-AATAATATTTAAAA
1 TAATAAATAA-ATTTAAAA
91335339 TAATAAATAAATTTAAA
1 TAATAAATAAATTTAAA
91335356 TATCATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAAATAAATTTAAAA
Found at i:91338506 original size:3 final size:3
Alignment explanation
Indices: 91338488--91338538 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
91338478 TCAAGCCCTT
* * * *
91338488 TGA TGA TGG TGT TGA TGA TGA TGA TGA TGA GGA TGG TGA TGA TGA TG-
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
91338535 TGA T
1 TGA T
91338539 AGGTCCAAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:91339624 original size:21 final size:22
Alignment explanation
Indices: 91339592--91339635 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
91339582 TTTAAAAGTA
91339592 AAAATAGATAATTT-TTTTAAT
1 AAAATAGATAATTTATTTTAAT
91339613 AAAA-AGACTAATTTAATTTTAAT
1 AAAATAGA-TAATTT-ATTTTAAT
91339636 TTAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.15
21 10 0.50
23 7 0.35
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (22 bp):
AAAATAGATAATTTATTTTAAT
Found at i:91340345 original size:14 final size:15
Alignment explanation
Indices: 91340318--91340350 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
91340308 GTAAAAGAAG
91340318 GAAAAAAAAGAAAAA
1 GAAAAAAAAGAAAAA
*
91340333 GAAAAAGAA-AAAAA
1 GAAAAAAAAGAAAAA
91340347 GAAA
1 GAAA
91340351 TACAAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAGAAAAA
Found at i:91341000 original size:29 final size:29
Alignment explanation
Indices: 91340958--91341017 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
91340948 AAAAGGCCTC
91340958 CATGATTCTTTTACCCCAATACATACCAA
1 CATGATTCTTTTACCCCAATACATACCAA
91340987 CATGATTCTTTTACCCCAATACATACCAA
1 CATGATTCTTTTACCCCAATACATACCAA
91341016 CA
1 CA
91341018 GAAATCATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.32, G:0.03, T:0.30
Consensus pattern (29 bp):
CATGATTCTTTTACCCCAATACATACCAA
Found at i:91346704 original size:15 final size:14
Alignment explanation
Indices: 91346684--91346726 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
91346674 CATGATTATA
91346684 ATTTTTATTATTGTT
1 ATTTTTATTATT-TT
*
91346699 ATTTTTATTCCTTTT
1 ATTTTTATT-ATTTT
91346714 ATTATTTATTATT
1 ATT-TTTATTATT
91346727 AATATATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (14 bp):
ATTTTTATTATTTT
Found at i:91349598 original size:11 final size:11
Alignment explanation
Indices: 91349582--91349612 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
91349572 ATACCCATAC
91349582 CCCATACCTTG
1 CCCATACCTTG
*
91349593 CCCATACCTTT
1 CCCATACCTTG
91349604 CCCATACCT
1 CCCATACCT
91349613 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:91350184 original size:18 final size:18
Alignment explanation
Indices: 91350163--91350213 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
91350153 CGTTTACGGT
91350163 ACTATTCACGTATACGAC
1 ACTATTCACGTATACGAC
**
91350181 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGAC
*
91350199 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
91350214 AGTAGTTGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACGAC
Found at i:91352981 original size:11 final size:11
Alignment explanation
Indices: 91352965--91352995 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
91352955 ATACCCATAC
91352965 CCCATACCTTG
1 CCCATACCTTG
*
91352976 CCCATACCTTT
1 CCCATACCTTG
91352987 CCCATACCT
1 CCCATACCT
91352996 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:91357885 original size:16 final size:17
Alignment explanation
Indices: 91357860--91357891 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
91357850 AAATTAATAT
91357860 TTATATAAATTTAGCAC
1 TTATATAAATTTAGCAC
91357877 TTATA-AAATTTAGCA
1 TTATATAAATTTAGCA
91357892 ATAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (17 bp):
TTATATAAATTTAGCAC
Found at i:91357900 original size:14 final size:16
Alignment explanation
Indices: 91357861--91357902 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
91357851 AATTAATATT
*
91357861 TATATAAATTTAGCACT
1 TATA-AAATTTAGCACA
91357878 TATAAAATTTAGCA-A
1 TATAAAATTTAGCACA
91357893 TA-AAAATTTA
1 TATAAAATTTA
91357903 ATATTACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 2 0.08
16 10 0.42
17 4 0.17
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (16 bp):
TATAAAATTTAGCACA
Found at i:91364771 original size:18 final size:18
Alignment explanation
Indices: 91364748--91364840 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
91364738 CCCAACTACT
*
91364748 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
91364766 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
91364784 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
91364802 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
91364820 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
91364838 GTA
1 GTA
91364841 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:91364800 original size:36 final size:36
Alignment explanation
Indices: 91364748--91364840 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
91364738 CCCAACTACT
*
91364748 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
91364784 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
91364820 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
91364841 AACGGTCGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:91367293 original size:12 final size:12
Alignment explanation
Indices: 91367278--91367320 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
91367268 ATAAATTTTA
91367278 AAAAAAATACAT
1 AAAAAAATACAT
*
91367290 AAAAAAAGACACT
1 AAAAAAATACA-T
*
91367303 AAAAATATACAT
1 AAAAAAATACAT
91367315 AAAAAA
1 AAAAAA
91367321 GACACTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAATACAT
Found at i:91367318 original size:24 final size:25
Alignment explanation
Indices: 91367278--91367332 Score: 94
Period size: 24 Copynumber: 2.2 Consensus size: 25
91367268 ATAAATTTTA
*
91367278 AAAAAAATACATAAAAAAAGACACT
1 AAAAATATACATAAAAAAAGACACT
91367303 AAAAATATACAT-AAAAAAGACACT
1 AAAAATATACATAAAAAAAGACACT
91367327 AAAAAT
1 AAAAAT
91367333 TGGGAGGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.71, C:0.11, G:0.04, T:0.15
Consensus pattern (25 bp):
AAAAATATACATAAAAAAAGACACT
Found at i:91367329 original size:12 final size:12
Alignment explanation
Indices: 91367291--91367331 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
91367281 AAAATACATA
91367291 AAAAAAGACACT
1 AAAAAAGACACT
*
91367303 AAAAATATACA-T
1 AAAAA-AGACACT
91367315 AAAAAAGACACT
1 AAAAAAGACACT
91367327 AAAAA
1 AAAAA
91367332 TTGGGAGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 4 0.16
12 17 0.68
13 4 0.16
ACGTcount: A:0.71, C:0.12, G:0.05, T:0.12
Consensus pattern (12 bp):
AAAAAAGACACT
Found at i:91372156 original size:21 final size:21
Alignment explanation
Indices: 91372130--91372170 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91372120 AGACGAGCAA
* *
91372130 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
91372151 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
91372171 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:91375995 original size:22 final size:22
Alignment explanation
Indices: 91375967--91376011 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
91375957 ATACATCAAC
91375967 ATTCTCAAGGCTTAACAAAATT
1 ATTCTCAAGGCTTAACAAAATT
91375989 ATTCTCAAGGCTTAACAAAATT
1 ATTCTCAAGGCTTAACAAAATT
91376011 A
1 A
91376012 AGAGTTTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (22 bp):
ATTCTCAAGGCTTAACAAAATT
Found at i:91378327 original size:15 final size:15
Alignment explanation
Indices: 91378307--91378351 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
91378297 TGACTAAATT
*
91378307 ATAATGATAGTAATA
1 ATAATGATAATAATA
*
91378322 ATAATGATAATGATA
1 ATAATGATAATAATA
*
91378337 ATAATGAGAATAATA
1 ATAATGATAATAATA
91378352 TATGTAGTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (15 bp):
ATAATGATAATAATA
Found at i:91378637 original size:4 final size:4
Alignment explanation
Indices: 91378628--91378652 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
91378618 TATAAGCAAT
91378628 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
91378653 GGATTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:91381579 original size:28 final size:29
Alignment explanation
Indices: 91381547--91381602 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
91381537 TTATTATTCC
* *
91381547 GAATATAAAAATAGATGA-TAATAAAAAT
1 GAATAGAAAAATAGATAATTAATAAAAAT
* *
91381575 GAATAGAATAATAGTTAATTAATAAAAA
1 GAATAGAAAAATAGATAATTAATAAAAA
91381603 AATAACATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (29 bp):
GAATAGAAAAATAGATAATTAATAAAAAT
Found at i:91386341 original size:127 final size:127
Alignment explanation
Indices: 91386036--91386341 Score: 362
Period size: 127 Copynumber: 2.4 Consensus size: 127
91386026 AAACCGACAT
* * *
91386036 CCAGCACGGTAGGGCACGTTTCATCGAATTTCCAAACATTGAACATTGCCTCGCTCTAGCATTTA
1 CCAGCACGATAGGGCACGATTCATCGAATTTCCAAACATTGAACATTGCCTTGCTCTAGCATTTA
* * *
91386101 GAAAATATGAATGAAATTCTAAAGGAATATCCAACTATTTTGAGCAAACCGGAAATCGAAAC
66 GAAAACATGAATGAAATTCTAAAGGAATATCCAACTATTTTAAACAAACCGGAAATCGAAAC
* * ** * * * *
91386163 CCAACACGATTGGGCACGATTCCCCAAATTTCCAAGCGTTGAATATTGCCTTG-TCTTAGCATTT
1 CCAGCACGATAGGGCACGATTCATCGAATTTCCAAACATTGAACATTGCCTTGCTC-TAGCATTT
* * * * * * *
91386227 TGAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTAAACAAACGGGAAATCGAAAC
65 AGAAAACATGAATGAAATTCTAAAGGAATATCCAACTATTTTAAACAAACCGGAAATCGAAAC
* * * **
91386290 CCGGCACGATAGGACACGATTCTTCGAATTTCCAAACATCAAACATTGCCTT
1 CCAGCACGATAGGGCACGATTCATCGAATTTCCAAACATTGAACATTGCCTT
91386342 TGGTTTGGGG
Statistics
Matches: 145, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
126 2 0.01
127 143 0.99
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (127 bp):
CCAGCACGATAGGGCACGATTCATCGAATTTCCAAACATTGAACATTGCCTTGCTCTAGCATTTA
GAAAACATGAATGAAATTCTAAAGGAATATCCAACTATTTTAAACAAACCGGAAATCGAAAC
Found at i:91388237 original size:26 final size:26
Alignment explanation
Indices: 91388208--91388317 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
91388198 TGGTACAAAT
91388208 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
91388234 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
91388260 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
91388286 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
91388312 TGATAA
1 TGATAA
91388318 GAATTTAATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:91388962 original size:25 final size:25
Alignment explanation
Indices: 91388913--91388964 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
91388903 ATTGGGACAG
*
91388913 CAGCAGTAACGTGACTTTGGAAAAT
1 CAGCAGTAACATGACTTTGGAAAAT
91388938 CAGCAGTAACATGACTTTGGAAAAT
1 CAGCAGTAACATGACTTTGGAAAAT
91388963 CA
1 CA
91388965 CCATAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (25 bp):
CAGCAGTAACATGACTTTGGAAAAT
Found at i:91390613 original size:130 final size:131
Alignment explanation
Indices: 91390380--91390759 Score: 582
Period size: 131 Copynumber: 2.9 Consensus size: 131
91390370 CATTTGTTCA
* *
91390380 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCAGAAGCGTGCCCTAACGTGT
1 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
*
91390445 TGGGTTGCAATTTTGTGTTTGCTCAAAATAATCAAATATCGC-TCGAAATTTCACTCACGTCTTC
66 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCACTCACGTCTTC
91390509 T
131 T
*
91390510 AAAATTCTTTAAAACGAAGACGATATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
1 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
* ** * *
91390575 TGGGATGCAATTTCACGTTTACTCAAAATAATCGAATATCGCTTCGAAATTTCACTCACGTCTTC
66 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCACTCACGTCTTC
91390640 T
131 T
* * * ** * *
91390641 AAAATTCTTCAAAATGAAGACGAGGTTCGATAATTAGCAATTCGCGGAATCGTGCCCTAACGTGT
1 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
* * *
91390706 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCAAGTATCCCTTCAAAATTTCA
66 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCA
91390760 TTCATATCTT
Statistics
Matches: 224, Mismatches: 25, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
130 98 0.44
131 126 0.56
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (131 bp):
AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCACTCACGTCTTC
T
Found at i:91402635 original size:44 final size:44
Alignment explanation
Indices: 91402586--91403287 Score: 866
Period size: 44 Copynumber: 16.0 Consensus size: 44
91402576 TTGGCGAATC
* ** *
91402586 TAGCAGATTTGGCGTCTTTGTATTATCAGAGGGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* *
91402630 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAAATCTAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * *
91402674 TAGCAGATTTGGCATCTCTATATTGGCGGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* *
91402718 TAACAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * ** *
91402762 TAGTAGATTTGGCGTCTCTGTACTATCAGAGGGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * * * *
91402806 TAACAGATTTAGTGTCTCTGTATTGTCAGAGGGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* ** *
91402850 TAGCAGATTTGACGTCTCTGTATTGGTGGAAAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * *
91402894 TAGCAGATTTGGCGTCTCTGTATTGGCGGAAAACAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * *
91402938 TAGCAGATTTGGCGTCTCTATATTGGCGGAGAGCAGATCAAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * * *
91402982 TAGCAGATTTGCCATATCTGTATTGGCGGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* *
91403026 TAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * *
91403070 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAACAGATCAAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* *
91403114 TAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * * * ** * *
91403158 TGGCAGATTTGACGTCTCTATGTTATCGGAGGGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * * *
91403202 TAGCAGATTTGGCATCTCTGTGTCGACAGAGAGCAGATCGAAGA
1 TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
* * * *
91403246 T-GACAGATTTGACATCTCTGTATTAGCAGAGAGAAGATCGAA
1 TAG-CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA
91403288 AATAACAAAT
Statistics
Matches: 578, Mismatches: 79, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
43 1 0.00
44 577 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (44 bp):
TAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
Found at i:91406121 original size:130 final size:131
Alignment explanation
Indices: 91405888--91406267 Score: 582
Period size: 131 Copynumber: 2.9 Consensus size: 131
91405878 CATTTGTTCA
* *
91405888 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCAGAAGCGTGCCCTAACGTGT
1 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
* *
91405953 TGGGTTGCAATTTTGTGTTTGCTCAAAATAATCAAATATCGC-TCGAAATTTCACTCACGTCTTC
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCACTCACGTCTTC
91406017 T
131 T
*
91406018 AAAATTCTTTAAAACGAAGACGATATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
1 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
* * * *
91406083 TGGGATGCAATTTCACGTTTACTCAAAATAATCGAATATCGCTTCGAAATTTCACTCACGTCTTC
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCACTCACGTCTTC
91406148 T
131 T
* * * ** * *
91406149 AAAATTCTTCAAAATGAAGACGAGGTTCGATAATTAGCAATTCGCGGAATCGTGCCCTAACGTGT
1 AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
* * *
91406214 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCAAGTATCCCTTCAAAATTTCA
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCA
91406268 TTCATATCTT
Statistics
Matches: 225, Mismatches: 24, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
130 98 0.44
131 127 0.56
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (131 bp):
AAAATTCTTTAAAACGAAGACGAGATTCGATGTTTGGCGATTCGCGGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCAAATATCGCTTCGAAATTTCACTCACGTCTTC
T
Found at i:91407134 original size:15 final size:15
Alignment explanation
Indices: 91407114--91407156 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
91407104 CTATACAATT
91407114 TTCAAATTAATCTCA
1 TTCAAATTAATCTCA
* *
91407129 TTCAAATACAATTTCA
1 TTCAAAT-TAATCTCA
*
91407145 TTCAATTTAATC
1 TTCAAATTAATC
91407157 CAACAACATA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
TTCAAATTAATCTCA
Found at i:91409794 original size:64 final size:63
Alignment explanation
Indices: 91409658--91409801 Score: 225
Period size: 64 Copynumber: 2.3 Consensus size: 63
91409648 TCAATCTTAT
* * * * *
91409658 TTTGGAAAATTGAAAATGAAATTAACCACAACTAGGCAAAAATCTAATTAGTTGGGCCCATAT
1 TTTGGAAAATTGAGAATGAAATTAACCACAACTAGGCAAAAATCAAATTAGCTGGGCCCACAA
*
91409721 TTTGGAAAATTGAGAATGAAATTAATCACAACTAGAGCAAAAATCAAATTAGCTGGGCCCACAA
1 TTTGGAAAATTGAGAATGAAATTAACCACAACTAG-GCAAAAATCAAATTAGCTGGGCCCACAA
91409785 TTTGGAAAATTGAGAAT
1 TTTGGAAAATTGAGAAT
91409802 CATAGTTGTG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
63 33 0.45
64 41 0.55
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (63 bp):
TTTGGAAAATTGAGAATGAAATTAACCACAACTAGGCAAAAATCAAATTAGCTGGGCCCACAA
Found at i:91413251 original size:23 final size:24
Alignment explanation
Indices: 91413207--91413273 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 24
91413197 TTTAGCCTAT
* *
91413207 TTACATTAAATTTTCAAAACCC-AC
1 TTACATTAAA-CTCCAAAACCCAAC
91413231 TTACATTAAACTCCAAAACCCAAC
1 TTACATTAAACTCCAAAACCCAAC
*
91413255 --ACATTAAACACCCAAAACC
1 TTACATTAAAC-TCCAAAACC
91413274 TAATAGCCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
22 9 0.24
23 17 0.45
24 12 0.32
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.22
Consensus pattern (24 bp):
TTACATTAAACTCCAAAACCCAAC
Found at i:91414815 original size:117 final size:117
Alignment explanation
Indices: 91414455--91414827 Score: 363
Period size: 117 Copynumber: 3.2 Consensus size: 117
91414445 GTATCGTTAT
* * * *
91414455 TATTATTATTATATATTAGTGCATATTTGTTATATACGTACATGTATATGTATATATATAGTAG-
1 TATTATTATTATATATTAGTGTATATTTTTTATATACGTATATGTATA--TATATTTATAGTAGC
* * *
91414519 TGTTTTTCATTATTTTATTTTAATATTTTATTATATTTGCTTTTT-TTTTTCATCGC
64 TCTTTTTTATTATTTTATTTTAATATTTTATTATATTTGCTTTTTGTATTT--T-GC
* * *
91414575 AATATTATTA-TATATATTA--GTATATTTTTT-TCATACATATATGCATATATATATATAGTAG
1 --TATTATTATTATATATTAGTGTATATTTTTTAT-ATACGTATATGTATATATATTTATAGTA-
* *
91414636 TGCTCTTTTTTATTACTTTATTTTAATATTTTATTATATTTGCTTTCTTGCA--TTGC
62 -GCTCTTTTTTATTATTTTATTTTAATATTTTATTATATTTGCTTT-TTGTATTTTGC
* * * *
91414692 AATATTATTATATATATATTAGTGTATATTTTTTATGTGCGTATATGTATATCTATTTTTA-TAG
1 --TATTATTAT-TATATATTAGTGTATATTTTTTATATACGTATATGTATATATATTTATAGTAG
***
91414756 CT-TTTTTTATTATTTTATTTTAATATTTTTATTATGCGTGCTTTTTGTATTTTGC
63 CTCTTTTTTATTATTTTATTTTAATA-TTTTATTATATTTGCTTTTTGTATTTTGC
91414811 TATTATTATTAT-TATTA
1 TATTATTATTATATATTA
91414828 TTATTATACA
Statistics
Matches: 215, Mismatches: 22, Indels: 35
0.79 0.08 0.13
Matches are distributed among these distances:
115 5 0.02
116 3 0.01
117 60 0.28
118 20 0.09
119 35 0.16
120 43 0.20
121 40 0.19
122 9 0.04
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.58
Consensus pattern (117 bp):
TATTATTATTATATATTAGTGTATATTTTTTATATACGTATATGTATATATATTTATAGTAGCTC
TTTTTTATTATTTTATTTTAATATTTTATTATATTTGCTTTTTGTATTTTGC
Found at i:91415033 original size:3 final size:3
Alignment explanation
Indices: 91415027--91415088 Score: 53
Period size: 3 Copynumber: 22.3 Consensus size: 3
91415017 TTTAATTAAT
* * *
91415027 TTA TTA TTT TTA TTA -TA TT- TTA TTA TTC TT- TT- TTA TT- TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
91415070 TTA TTA CTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
91415089 CATTGTTAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 10 0.21
3 38 0.79
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:91415033 original size:19 final size:20
Alignment explanation
Indices: 91415009--91415071 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 20
91414999 ATATATATAG
91415009 TATTATTTTTTAATTA-A-TT
1 TATTATTTTTT-ATTATATTT
91415028 TATTA-TTTTTATTATATTT
1 TATTATTTTTTATTATATTT
*
91415047 TATTATTCTTT-TT-TATTT
1 TATTATTTTTTATTATATTT
*
91415065 TAATATT
1 TATTATT
91415072 ATTACTATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.10
18 17 0.44
19 14 0.36
20 4 0.10
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTTTTTATTATATTT
Found at i:91415044 original size:40 final size:43
Alignment explanation
Indices: 91414998--91415085 Score: 99
Period size: 41 Copynumber: 2.1 Consensus size: 43
91414988 TGTACATGTA
* *
91414998 TATATATATAGTATTATTTTTTA-ATTAAT-TTATTATTTTTAT
1 TATAT-TATAGTATTATTTTTTATATTAATATTATTACTATTAT
* * * *
91415040 TATATTTTATTATTCTTTTTTATTTTAATATTATTACTATTAT
1 TATATTATAGTATTATTTTTTATATTAATATTATTACTATTAT
91415083 TAT
1 TAT
91415086 TATCATTGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 14 0.37
42 10 0.26
43 14 0.37
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (43 bp):
TATATTATAGTATTATTTTTTATATTAATATTATTACTATTAT
Found at i:91415568 original size:3 final size:3
Alignment explanation
Indices: 91415560--91415587 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
91415550 ACTTTGGATT
91415560 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
91415588 CTTGTATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:91421053 original size:30 final size:29
Alignment explanation
Indices: 91421005--91421061 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
91420995 CCCAAACACA
91421005 AAACCCAAATACCTCAGACCCGTTACAGC
1 AAACCCAAATACCTCAGACCCGTTACAGC
*
91421034 AAACCCAAAATAGCC-CAGACCTGTTACA
1 AAACCC-AAATA-CCTCAGACCCGTTACA
91421062 CCCTACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 17 0.68
31 2 0.08
ACGTcount: A:0.40, C:0.35, G:0.11, T:0.14
Consensus pattern (29 bp):
AAACCCAAATACCTCAGACCCGTTACAGC
Found at i:91422316 original size:12 final size:12
Alignment explanation
Indices: 91422301--91422333 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91422291 TATTTTTAAT
91422301 TTATTATATATA
1 TTATTATATATA
91422313 TTATT-TATTATA
1 TTATTATA-TATA
91422325 TTATTATAT
1 TTATTATAT
91422334 TTTCAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.11
12 15 0.79
13 2 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTATATATA
Found at i:91422320 original size:16 final size:15
Alignment explanation
Indices: 91422299--91422331 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
91422289 CTTATTTTTA
91422299 ATTTATTATATATATT
1 ATTTATTATAT-TATT
91422315 ATTTATTATATTATT
1 ATTTATTATATTATT
91422330 AT
1 AT
91422332 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTATTATATTATT
Found at i:91422366 original size:7 final size:7
Alignment explanation
Indices: 91422349--91422494 Score: 53
Period size: 7 Copynumber: 21.4 Consensus size: 7
91422339 AAATTTGTAA
91422349 ATTAT-T
1 ATTATAT
91422355 ATTATAT
1 ATTATAT
91422362 ATTATAT
1 ATTATAT
91422369 -TT-TA-
1 ATTATAT
91422373 ACTTATAT
1 A-TTATAT
91422381 ATCT-TAT
1 AT-TATAT
*
91422388 A-TATTT
1 ATTATAT
91422394 ATT-TAT
1 ATTATAT
*
91422400 ATTATAC
1 ATTATAT
91422407 ATTAT-T
1 ATTATAT
* *
91422413 -TTAAAA
1 ATTATAT
*
91422419 ACTTACAT
1 A-TTATAT
*
91422427 -TTTTAT
1 ATTATAT
91422433 ATTATAT
1 ATTATAT
*
91422440 ATTATAA
1 ATTATAT
*
91422447 ATTATTT
1 ATTATAT
91422454 CATT-TATT
1 -ATTATA-T
*
91422462 ATTATTT
1 ATTATAT
*
91422469 TTATATACT
1 AT-TATA-T
91422478 ATTATAT
1 ATTATAT
*
91422485 ATTATCT
1 ATTATAT
91422492 ATT
1 ATT
91422495 TTAAAATTCA
Statistics
Matches: 102, Mismatches: 20, Indels: 35
0.65 0.13 0.22
Matches are distributed among these distances:
5 6 0.06
6 21 0.21
7 55 0.54
8 18 0.18
9 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTATAT
Found at i:91422487 original size:26 final size:28
Alignment explanation
Indices: 91422458--91422524 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
91422448 TTATTTCATT
* * *
91422458 TATTATTATTTTTATA-T-ACTATTATA
1 TATTATTATTTTAAAATTCACTATTAAA
91422484 TATTATCTATTTTAAAATTCACTATTAAA
1 TATTAT-TATTTTAAAATTCACTATTAAA
91422513 TATTA-TATTTTA
1 TATTATTATTTTA
91422525 TGTATTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.17
27 15 0.43
28 1 0.03
29 13 0.37
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (28 bp):
TATTATTATTTTAAAATTCACTATTAAA
Found at i:91425792 original size:30 final size:29
Alignment explanation
Indices: 91425744--91425800 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
91425734 CCCAAACACA
91425744 AAACCCAAATACCTCAGACCCGTTACAGC
1 AAACCCAAATACCTCAGACCCGTTACAGC
*
91425773 AAACCCAAAATAGCC-CAGACCTGTTACA
1 AAACCC-AAATA-CCTCAGACCCGTTACA
91425801 CCCTACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 17 0.68
31 2 0.08
ACGTcount: A:0.40, C:0.35, G:0.11, T:0.14
Consensus pattern (29 bp):
AAACCCAAATACCTCAGACCCGTTACAGC
Found at i:91427055 original size:12 final size:12
Alignment explanation
Indices: 91427040--91427072 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91427030 TATTTTTAAT
91427040 TTATTATATATA
1 TTATTATATATA
91427052 TTATT-TATTATA
1 TTATTATA-TATA
91427064 TTATTATAT
1 TTATTATAT
91427073 TTTCAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.11
12 15 0.79
13 2 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTATATATA
Found at i:91427059 original size:16 final size:15
Alignment explanation
Indices: 91427038--91427070 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
91427028 CTTATTTTTA
91427038 ATTTATTATATATATT
1 ATTTATTATAT-TATT
91427054 ATTTATTATATTATT
1 ATTTATTATATTATT
91427069 AT
1 AT
91427071 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTATTATATTATT
Found at i:91427105 original size:7 final size:7
Alignment explanation
Indices: 91427088--91427233 Score: 53
Period size: 7 Copynumber: 21.4 Consensus size: 7
91427078 AAATTTGTAA
91427088 ATTAT-T
1 ATTATAT
91427094 ATTATAT
1 ATTATAT
91427101 ATTATAT
1 ATTATAT
91427108 -TT-TA-
1 ATTATAT
91427112 ACTTATAT
1 A-TTATAT
91427120 ATCT-TAT
1 AT-TATAT
*
91427127 A-TATTT
1 ATTATAT
91427133 ATT-TAT
1 ATTATAT
*
91427139 ATTATAC
1 ATTATAT
91427146 ATTAT-T
1 ATTATAT
* *
91427152 -TTAAAA
1 ATTATAT
*
91427158 ACTTACAT
1 A-TTATAT
*
91427166 -TTTTAT
1 ATTATAT
91427172 ATTATAT
1 ATTATAT
*
91427179 ATTATAA
1 ATTATAT
*
91427186 ATTATTT
1 ATTATAT
91427193 CATT-TATT
1 -ATTATA-T
*
91427201 ATTATTT
1 ATTATAT
*
91427208 TTATATACT
1 AT-TATA-T
91427217 ATTATAT
1 ATTATAT
*
91427224 ATTATCT
1 ATTATAT
91427231 ATT
1 ATT
91427234 TTAAAATTCA
Statistics
Matches: 102, Mismatches: 20, Indels: 35
0.65 0.13 0.22
Matches are distributed among these distances:
5 6 0.06
6 21 0.21
7 55 0.54
8 18 0.18
9 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTATAT
Found at i:91427226 original size:26 final size:28
Alignment explanation
Indices: 91427197--91427263 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
91427187 TTATTTCATT
* * *
91427197 TATTATTATTTTTATA-T-ACTATTATA
1 TATTATTATTTTAAAATTCACTATTAAA
91427223 TATTATCTATTTTAAAATTCACTATTAAA
1 TATTAT-TATTTTAAAATTCACTATTAAA
91427252 TATTA-TATTTTA
1 TATTATTATTTTA
91427264 TGTATTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.17
27 15 0.43
28 1 0.03
29 13 0.37
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (28 bp):
TATTATTATTTTAAAATTCACTATTAAA
Found at i:91427798 original size:30 final size:29
Alignment explanation
Indices: 91427750--91427806 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
91427740 CCCAAACACA
91427750 AAACCCAAATACCTCAGACCCGTTACAGC
1 AAACCCAAATACCTCAGACCCGTTACAGC
*
91427779 AAACCCAAAATAGCC-CAGACCTGTTACA
1 AAACCC-AAATA-CCTCAGACCCGTTACA
91427807 CCCTACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 17 0.68
31 2 0.08
ACGTcount: A:0.40, C:0.35, G:0.11, T:0.14
Consensus pattern (29 bp):
AAACCCAAATACCTCAGACCCGTTACAGC
Found at i:91429061 original size:12 final size:12
Alignment explanation
Indices: 91429046--91429078 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91429036 TATTTTTAAT
91429046 TTATTATATATA
1 TTATTATATATA
91429058 TTATT-TATTATA
1 TTATTATA-TATA
91429070 TTATTATAT
1 TTATTATAT
91429079 TTTCAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.11
12 15 0.79
13 2 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTATATATA
Found at i:91429065 original size:16 final size:15
Alignment explanation
Indices: 91429044--91429076 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
91429034 CTTATTTTTA
91429044 ATTTATTATATATATT
1 ATTTATTATAT-TATT
91429060 ATTTATTATATTATT
1 ATTTATTATATTATT
91429075 AT
1 AT
91429077 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTATTATATTATT
Found at i:91429111 original size:7 final size:7
Alignment explanation
Indices: 91429094--91429239 Score: 53
Period size: 7 Copynumber: 21.4 Consensus size: 7
91429084 AAATTTGTAA
91429094 ATTAT-T
1 ATTATAT
91429100 ATTATAT
1 ATTATAT
91429107 ATTATAT
1 ATTATAT
91429114 -TT-TA-
1 ATTATAT
91429118 ACTTATAT
1 A-TTATAT
91429126 ATCT-TAT
1 AT-TATAT
*
91429133 A-TATTT
1 ATTATAT
91429139 ATT-TAT
1 ATTATAT
*
91429145 ATTATAC
1 ATTATAT
91429152 ATTAT-T
1 ATTATAT
* *
91429158 -TTAAAA
1 ATTATAT
*
91429164 ACTTACAT
1 A-TTATAT
*
91429172 -TTTTAT
1 ATTATAT
91429178 ATTATAT
1 ATTATAT
*
91429185 ATTATAA
1 ATTATAT
*
91429192 ATTATTT
1 ATTATAT
91429199 CATT-TATT
1 -ATTATA-T
*
91429207 ATTATTT
1 ATTATAT
*
91429214 TTATATACT
1 AT-TATA-T
91429223 ATTATAT
1 ATTATAT
*
91429230 ATTATCT
1 ATTATAT
91429237 ATT
1 ATT
91429240 TTAAAATTCA
Statistics
Matches: 102, Mismatches: 20, Indels: 35
0.65 0.13 0.22
Matches are distributed among these distances:
5 6 0.06
6 21 0.21
7 55 0.54
8 18 0.18
9 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTATAT
Found at i:91429232 original size:26 final size:28
Alignment explanation
Indices: 91429203--91429269 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
91429193 TTATTTCATT
* * *
91429203 TATTATTATTTTTATA-T-ACTATTATA
1 TATTATTATTTTAAAATTCACTATTAAA
91429229 TATTATCTATTTTAAAATTCACTATTAAA
1 TATTAT-TATTTTAAAATTCACTATTAAA
91429258 TATTA-TATTTTA
1 TATTATTATTTTA
91429270 TGTATTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.17
27 15 0.43
28 1 0.03
29 13 0.37
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (28 bp):
TATTATTATTTTAAAATTCACTATTAAA
Found at i:91432911 original size:15 final size:15
Alignment explanation
Indices: 91432882--91432924 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
91432872 CTTTTTGTAT
91432882 TCATGCATTTGCATC
1 TCATGCATTTGCATC
91432897 TCATAGCATTT-CATC
1 TCAT-GCATTTGCATC
*
91432912 ACAT-CATTTGCAT
1 TCATGCATTTGCAT
91432925 TCAAAGTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 11 0.44
16 6 0.24
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (15 bp):
TCATGCATTTGCATC
Found at i:91436020 original size:501 final size:499
Alignment explanation
Indices: 91435078--91436076 Score: 1802
Period size: 501 Copynumber: 2.0 Consensus size: 499
91435068 GTTGAGAAAG
* * *
91435078 AGAAAGAGATTGGAATACCCATCAATGAGCCAGTAAATGAGTAGAAGGCTAAGGAGTTCTTAAAG
1 AGAAAGAGACTGAAATACCCATCAATGAGCCAGTAAATGAGGAGAAGGCTAAGGAGTTCTTAAAG
*
91435143 TTCCTTAAGCATAGCGAGTATAGTGTGGTCGAGCAGTTGCGTAAGCAGCCAGTGTGTATATCAGA
66 TTCCTTAAGCATAGCGAGTATAGTGTGGTCGAGCAGTTGCGTAAGCAGCCAGTGCGTATATCAGA
* * *
91435208 ATTAGCCTTGTTTCTGAGTTCTGAGGTGCGTCGGGATGCATTATTGAAGGTGCTTAACGAAACAT
131 ATTAGCCTTGCTTCTGAGTTCTAAGGTGCATCGGGATGCATTATTGAAGGTGCTTAACGAAACAT
*
91435273 ATGCCACCCACGACATATCCATTAACAAATTGGATCGGTTGGTAAATAACATCAGTGCTGACAAT
196 ATGCCACCCACGACATATCCATTAACAAATTGGATCGGTTGGTAAATAACATCAGTGCTAACAAT
*
91435338 TTCATCTATTTCAATGATGATAAAATTCCACTTGGGGGTATAGGGTCAACCAAAGCCTTGCACAT
261 TTCATCTATTTCAATGATGATAAAATTCCACCTGGGGGTATAGGGTCAACCAAAGCCTTGCACAT
91435403 CACTACTCGGTGCAAAGGATACACGCTGCCAAGTGCACTCGTTGATAATGGGTCTGCTTTGAACG
326 CACTACTCGGTGCAAAGGATACACGCTGCCAAGTGCACTCGTTGATAATGGGTCTGCTTTGAACG
91435468 TCCTGCCATTATCCACCTTGAACAGATTACCCATTGACAGTTCGCATATGAAAACATGTCATAAT
391 TCCTGCCATTATCCACCTTGAACAGATTACCCATTGACAGTTCGCATATGAAAACATGTCATAAT
91435533 GTGGTAAGAGCCTTTGATAGAATTGAAAAAAAAAAGTGATGGGACA
456 GTGGTAAGAGCCTTTGATAGAATTG--AAAAAAAAGTGATGGGACA
* *
91435579 AGAAAGAGACTGAAATACCCATCAATGAGCCAGTAAATTAGGAGGAGGCTAAGGAGTTCTTAAAG
1 AGAAAGAGACTGAAATACCCATCAATGAGCCAGTAAATGAGGAGAAGGCTAAGGAGTTCTTAAAG
*
91435644 TTCCTTAAGCATAGCGAGTATAGTGTGGTCGAGCAGTTGCGTAAGCAGCCAGTGCGTATATCAGT
66 TTCCTTAAGCATAGCGAGTATAGTGTGGTCGAGCAGTTGCGTAAGCAGCCAGTGCGTATATCAGA
91435709 ATTAGCCTTGCTTCTGAGTTCTAAGGTGCATCGGGATGCATTATT-ACAGGTGCTTAACGAAACA
131 ATTAGCCTTGCTTCTGAGTTCTAAGGTGCATCGGGATGCATTATTGA-AGGTGCTTAACGAAACA
*
91435773 TATGTCACCCACGACATATCCATTAACAAATTGGATCGGTTGGTAAATAACATCAGTGCTAACAA
195 TATGCCACCCACGACATATCCATTAACAAATTGGATCGGTTGGTAAATAACATCAGTGCTAACAA
*
91435838 TTTCATCTATTTCAATGATGATGAAATTCCACCTGGGGGTATAGGGTCAACCAAAGCCTTGCACA
260 TTTCATCTATTTCAATGATGATAAAATTCCACCTGGGGGTATAGGGTCAACCAAAGCCTTGCACA
*
91435903 TCACTACTCGGTGCAAAGGATATACGCTGCCAAGTGCACTCGTTGATAATGGGTCTGCTTTGAAC
325 TCACTACTCGGTGCAAAGGATACACGCTGCCAAGTGCACTCGTTGATAATGGGTCTGCTTTGAAC
*
91435968 GTCCTGCCATTATCCACCTTGAACAGATTACCCATTGACAGTTCGGATATGAAAACATGTCATAA
390 GTCCTGCCATTATCCACCTTGAACAGATTACCCATTGACAGTTCGCATATGAAAACATGTCATAA
* *
91436033 TGTGGTAAGAGCCTTTGATGGAATTGAAAGAAAAGTGATGGGAC
455 TGTGGTAAGAGCCTTTGATAGAATTGAAAAAAAAGTGATGGGAC
91436077 GAATCGACAT
Statistics
Matches: 479, Mismatches: 18, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
499 17 0.04
500 1 0.00
501 461 0.96
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (499 bp):
AGAAAGAGACTGAAATACCCATCAATGAGCCAGTAAATGAGGAGAAGGCTAAGGAGTTCTTAAAG
TTCCTTAAGCATAGCGAGTATAGTGTGGTCGAGCAGTTGCGTAAGCAGCCAGTGCGTATATCAGA
ATTAGCCTTGCTTCTGAGTTCTAAGGTGCATCGGGATGCATTATTGAAGGTGCTTAACGAAACAT
ATGCCACCCACGACATATCCATTAACAAATTGGATCGGTTGGTAAATAACATCAGTGCTAACAAT
TTCATCTATTTCAATGATGATAAAATTCCACCTGGGGGTATAGGGTCAACCAAAGCCTTGCACAT
CACTACTCGGTGCAAAGGATACACGCTGCCAAGTGCACTCGTTGATAATGGGTCTGCTTTGAACG
TCCTGCCATTATCCACCTTGAACAGATTACCCATTGACAGTTCGCATATGAAAACATGTCATAAT
GTGGTAAGAGCCTTTGATAGAATTGAAAAAAAAGTGATGGGACA
Found at i:91442733 original size:25 final size:27
Alignment explanation
Indices: 91442696--91442748 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
91442686 TCAAACATGC
91442696 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
91442722 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
91442748 A
1 A
91442749 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:91443992 original size:26 final size:26
Alignment explanation
Indices: 91443956--91444065 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
91443946 CATGAAATTC
91443956 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91443982 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91444008 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
91444034 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91444060 TTATCA
1 TTATCA
91444066 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91445132 original size:30 final size:29
Alignment explanation
Indices: 91445090--91445146 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
91445080 CCCAAACACA
*
91445090 AAACCCAAATACCTCAGACCCGTTACAGC
1 AAACCCAAATACCCCAGACCCGTTACAGC
*
91445119 AAACCCAAAATACCCCAGACCTGTTACA
1 AAACCC-AAATACCCCAGACCCGTTACA
91445147 CCCTACCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.40, C:0.37, G:0.09, T:0.14
Consensus pattern (29 bp):
AAACCCAAATACCCCAGACCCGTTACAGC
Found at i:91445155 original size:30 final size:30
Alignment explanation
Indices: 91445085--91445157 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
91445075 AAGAGCCCAA
* *
91445085 ACACAAAACCC-AAATACCTCAGACCCGTT
1 ACACCAAACCCAAAATACCCCAGACCCGTT
* *
91445114 ACAGCAAACCCAAAATACCCCAGACCTGTT
1 ACACCAAACCCAAAATACCCCAGACCCGTT
**
91445144 ACACCCTACCCAAA
1 ACACCAAACCCAAA
91445158 CCAGACCCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 9 0.25
30 27 0.75
ACGTcount: A:0.41, C:0.40, G:0.07, T:0.12
Consensus pattern (30 bp):
ACACCAAACCCAAAATACCCCAGACCCGTT
Found at i:91446407 original size:16 final size:15
Alignment explanation
Indices: 91446388--91446420 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
91446378 ACTTATTTTA
91446388 ATTTATTATATATATT
1 ATTTATTATAT-TATT
91446404 ATTTATTATATTATT
1 ATTTATTATATTATT
91446419 AT
1 AT
91446421 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTATTATATTATT
Found at i:91446455 original size:7 final size:7
Alignment explanation
Indices: 91446438--91446583 Score: 53
Period size: 7 Copynumber: 21.4 Consensus size: 7
91446428 AAATTTGTAA
91446438 ATTAT-T
1 ATTATAT
91446444 ATTATAT
1 ATTATAT
91446451 ATTATAT
1 ATTATAT
91446458 -TT-TA-
1 ATTATAT
91446462 ACTTATAT
1 A-TTATAT
91446470 ATCT-TAT
1 AT-TATAT
*
91446477 A-TATTT
1 ATTATAT
91446483 ATT-TAT
1 ATTATAT
*
91446489 ATTATAC
1 ATTATAT
91446496 ATTAT-T
1 ATTATAT
* *
91446502 -TTAAAA
1 ATTATAT
*
91446508 ACTTACAT
1 A-TTATAT
*
91446516 -TTTTAT
1 ATTATAT
91446522 ATTATAT
1 ATTATAT
*
91446529 ATTATAA
1 ATTATAT
*
91446536 ATTATTT
1 ATTATAT
91446543 CATT-TATT
1 -ATTATA-T
*
91446551 ATTATTT
1 ATTATAT
*
91446558 TTATATACT
1 AT-TATA-T
91446567 ATTATAT
1 ATTATAT
*
91446574 ATTATCT
1 ATTATAT
91446581 ATT
1 ATT
91446584 TTAAAATTCA
Statistics
Matches: 102, Mismatches: 20, Indels: 35
0.65 0.13 0.22
Matches are distributed among these distances:
5 6 0.06
6 21 0.21
7 55 0.54
8 18 0.18
9 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTATAT
Found at i:91452109 original size:18 final size:19
Alignment explanation
Indices: 91452088--91452129 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
91452078 ACAATATGTG
91452088 TATATAA-ATGTAAAATAA
1 TATATAATATGTAAAATAA
* *
91452106 TATATAATTTTTAAAATAA
1 TATATAATATGTAAAATAA
91452125 TATAT
1 TATAT
91452130 GATAATAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TATATAATATGTAAAATAA
Found at i:91455723 original size:24 final size:26
Alignment explanation
Indices: 91455696--91455743 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
91455686 TATGAATACG
91455696 TACAT-ATAATATA-ATAT-TAAAATA
1 TACATAAT-ATATACATATATAAAATA
91455720 TACATAATATATACATATATAAAA
1 TACATAATATATACATATATAAAA
91455744 CATGTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 10 0.48
25 6 0.29
26 5 0.24
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (26 bp):
TACATAATATATACATATATAAAATA
Found at i:91457467 original size:88 final size:87
Alignment explanation
Indices: 91457254--91457670 Score: 382
Period size: 88 Copynumber: 4.7 Consensus size: 87
91457244 TTACTCGGTG
** * * * * *
91457254 TGTGACCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGACTTTTAAAAACTAGACATTAAAA
1 TGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC-AGAAATTGAAA
*
91457318 ACAGAA-ATTGAAAA-ACAGCTCAGCA
64 ACA-AATTTTGAAAATAC--CTCAGCA
* **** * * * *
91457343 CGTGAGTAAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGCCAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG-AAAA
*
91457408 CAGATTTTGAAAATACCTCAGCA
65 CAAATTTTGAAAATACCTCAGCA
* * * *
91457431 TGTGACCCGAGGCTCAACTCACCTCTTGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAAATTGAAAA
91457496 -AACATTAATTGAAAATACCTCAGC-
65 CAA-ATT--TTGAAAATACCTCAGCA
*
91457520 -GTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACGAACAGAAATTGAAA
1 TGTGACC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTG-AA
** *
91457582 AACAAAAATTGAAAAGACCTCAGCA
63 AACAAATTTTGAAAATACCTCAGCA
** * *
91457607 TGTGAGTCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAA
91457671 TTACCTCAAC
Statistics
Matches: 269, Mismatches: 43, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
86 15 0.06
87 16 0.06
88 143 0.53
89 77 0.29
90 18 0.07
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (87 bp):
TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAC
AAATTTTGAAAATACCTCAGCA
Done.