Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 278 of 310
Found at i:91457789 original size:250 final size:248
Alignment explanation
Indices: 91457439--91458177 Score: 1065
Period size: 250 Copynumber: 2.9 Consensus size: 248
91457429 CATGTGACCC
* * * *
91457439 GAGGCTCAACTCACCTCTTGTAATATGAGTTGA--TTCTTGAAAAGCATAAATTGAAAAAACATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAGCATAAATTGAAAAAACA-A
91457502 AATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAC
64 AATTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAC
*
91457567 GAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTC
128 AAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTC
91457632 TCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTGTCCT
193 TCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTGTCCT
* * *
91457688 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTG-GAAAGCAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AGCATAAATTGAAAAAACA-A
*
91457752 AATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAC
64 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAC
* *
91457817 AAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCATCTC
128 AAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTC
* * *
91457882 TCGCGATATGAGTTGATTTTTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCT
193 TCGCGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTGTCCT
*
91457938 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAACTA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGCATAAATTG-AAAAAAC-A
* *
91458003 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
63 AAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
* * ** **
91458068 TGACAAACATAAATTGAAAAAAACTAAAATTGAAATTACCTCAGCATGT-CCT-GAGGCTCAACT
124 TGACAAACAGAAATTG--AAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACT
* *
91458131 CACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAA
187 CACCTCTCGCGATATGAGTTGA--TTTTTGACAAACAAAAATTGAAA
91458178 AAAACTAAAA
Statistics
Matches: 441, Mismatches: 34, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
249 31 0.07
250 233 0.53
251 19 0.04
252 59 0.13
253 1 0.00
255 49 0.11
256 1 0.00
257 48 0.11
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (248 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCATAAATTGAAAAAACAAAA
TTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAA
CAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCG
CGATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTGTCCT
Found at i:91457816 original size:161 final size:161
Alignment explanation
Indices: 91457502--91458177 Score: 566
Period size: 161 Copynumber: 4.0 Consensus size: 161
91457492 AAAAAACATT
* *
91457502 AATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG
1 AATTGAAATTACCTCAGCATGTCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * * * **
91457565 ACGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACC
66 AAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGT-CCT-GAGGCTCAACTCACC
*
91457630 TCTCGCGATATGAGTTGATTTTTGACAAACAAA
129 TCTCGCAATATGAGTTGATTTTTGACAAACAAA
* *
91457663 AATTGAAATTACCTCAACGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAATTACCTCAGCATGTCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* * * * *
91457727 TGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACC
64 TGAAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
91457792 TCTCGCAATATGAGTTGA-TTTTGACAAACAGA
129 TCTCGCAATATGAGTTGATTTTTGACAAACAAA
** * *
91457824 AATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCATCTCTCGCGAT
1 AATT--------GAAATT------ACCTCAGCATGT-CCTCGAGGCTCAACTCACCTCTCGCAAT
*
91457889 ATGAGTTGATTTTT---G-AC--AAA-T-------AGAAATTGAAATTACCTCAGCGTGTCCTGA
51 ATGAGTTGATTTTTGAAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGA
91457940 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAACTAA
116 GGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAAC--------------A--AA
91458004 AATTGAAATTACCTCAGCATGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAATTACCTCAGCATGTCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* * *
91458068 TGACA-AACATAAATTGAAAAAAACTA-AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACT
64 TGA-AGAACAGAAATTG--AAAAAC-AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
*
91458131 CACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATA
125 CACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAA
91458170 AATTGAAA
1 AATTGAAA
91458178 AAAACTAAAA
Statistics
Matches: 424, Mismatches: 32, Indels: 113
0.75 0.06 0.20
Matches are distributed among these distances:
161 127 0.30
162 35 0.08
163 1 0.00
164 83 0.20
165 1 0.00
166 26 0.06
168 2 0.00
169 9 0.02
170 2 0.00
171 1 0.00
172 10 0.02
173 1 0.00
175 15 0.04
176 1 0.00
177 31 0.07
178 1 0.00
180 5 0.01
182 72 0.17
183 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (161 bp):
AATTGAAATTACCTCAGCATGTCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTGACAAACAAA
Found at i:91457834 original size:14 final size:14
Alignment explanation
Indices: 91457812--91457846 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
91457802 TGAGTTGATT
*
91457812 TTGACAAACAGAAA
1 TTGAAAAACAGAAA
91457826 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
91457840 TTGAAAA
1 TTGAAAA
91457847 GACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:91458067 original size:91 final size:91
Alignment explanation
Indices: 91457912--91458248 Score: 656
Period size: 91 Copynumber: 3.7 Consensus size: 91
91457902 TGACAAATAG
*
91457912 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
91457977 TGACAAACATAAATTGAAAAAAACTA
66 TGACAAACATAAATTGAAAAAAACTA
91458003 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
91458068 TGACAAACATAAATTGAAAAAAACTA
66 TGACAAACATAAATTGAAAAAAACTA
91458094 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
91458159 TGACAAACATAAATTGAAAAAAACTA
66 TGACAAACATAAATTGAAAAAAACTA
*
91458185 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTTT
1 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91458249 GAAAAATAGA
Statistics
Matches: 244, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 244 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (91 bp):
AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGACAAACATAAATTGAAAAAAACTA
Found at i:91473236 original size:24 final size:26
Alignment explanation
Indices: 91473209--91473256 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
91473199 TATGAATACG
91473209 TACAT-ATAATATA-ATAT-TAAAATA
1 TACATAAT-ATATACATATATAAAATA
91473233 TACATAATATATACATATATAAAA
1 TACATAATATATACATATATAAAA
91473257 CATGTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 10 0.48
25 6 0.29
26 5 0.24
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (26 bp):
TACATAATATATACATATATAAAATA
Found at i:91492672 original size:37 final size:37
Alignment explanation
Indices: 91492622--91492697 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
91492612 GAGGTATTTA
*
91492622 AATAAGGAATTGGATTGCATTTTACCCCCTATTCAAG
1 AATAAGAAATTGGATTGCATTTTACCCCCTATTCAAG
*
91492659 AATAAGAAATTGGATTGTATTTTACCCCCTATTCAAG
1 AATAAGAAATTGGATTGCATTTTACCCCCTATTCAAG
91492696 AA
1 AA
91492698 ATAGGAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (37 bp):
AATAAGAAATTGGATTGCATTTTACCCCCTATTCAAG
Found at i:91493719 original size:2 final size:2
Alignment explanation
Indices: 91493714--91493746 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
91493704 ACACACTTAA
*
91493714 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91493747 AATGTGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:91496735 original size:29 final size:29
Alignment explanation
Indices: 91496664--91496738 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
91496654 ATGCATAATC
* *
91496664 ATTAATTTAATTCCATTTCATTTATAAGC
1 ATTAATTTAATTCTATTTCATTTATAAGA
*
91496693 ATTAATTTAATTCTATTTTATTTATAAGA
1 ATTAATTTAATTCTATTTCATTTATAAGA
91496722 ATTAATTTAATTCTATT
1 ATTAATTTAATTCTATT
91496739 ATTTCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (29 bp):
ATTAATTTAATTCTATTTCATTTATAAGA
Found at i:91501509 original size:14 final size:14
Alignment explanation
Indices: 91501490--91501516 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91501480 TTGATTTCAA
91501490 TTTTTTGTTTTTGC
1 TTTTTTGTTTTTGC
91501504 TTTTTTGTTTTTG
1 TTTTTTGTTTTTG
91501517 TACTGAACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.04, G:0.15, T:0.81
Consensus pattern (14 bp):
TTTTTTGTTTTTGC
Found at i:91501955 original size:15 final size:15
Alignment explanation
Indices: 91501922--91501955 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
91501912 AATAAATTAT
* *
91501922 TTAAAAAATATAAAT
1 TTAAAAAATAAAAAA
91501937 TTAAAAAATAAAAAA
1 TTAAAAAATAAAAAA
91501952 TTAA
1 TTAA
91501956 TTCAACTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
TTAAAAAATAAAAAA
Found at i:91510579 original size:18 final size:18
Alignment explanation
Indices: 91510556--91510612 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
91510546 CCCAACTACT
91510556 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
91510574 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
91510592 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
91510610 GTA
1 GTA
91510613 AACGGTCGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:91518237 original size:16 final size:16
Alignment explanation
Indices: 91518216--91518254 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
91518206 GTTTGATTAA
*
91518216 CTGTAATAGAATAGAG
1 CTGTAATAAAATAGAG
91518232 CTGTAATAAAATAGAG
1 CTGTAATAAAATAGAG
*
91518248 TTGTAAT
1 CTGTAAT
91518255 TAGTAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (16 bp):
CTGTAATAAAATAGAG
Found at i:91518416 original size:7 final size:7
Alignment explanation
Indices: 91518404--91518430 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
91518394 ATATATATTT
91518404 AATAATA
1 AATAATA
91518411 AATAATA
1 AATAATA
91518418 AATAATA
1 AATAATA
91518425 AATAAT
1 AATAAT
91518431 TTAATCATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATAATA
Found at i:91518463 original size:16 final size:15
Alignment explanation
Indices: 91518444--91518481 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
91518434 ATCATATTTT
91518444 AATATAAATATTATTA
1 AATATAAAT-TTATTA
91518460 AATAT-AATTTATTA
1 AATATAAATTTATTA
*
91518474 AAAATAAA
1 AATATAAA
91518482 AATATATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 10 0.50
15 5 0.25
16 5 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATATAAATTTATTA
Found at i:91518529 original size:16 final size:16
Alignment explanation
Indices: 91518499--91518549 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 16
91518489 GATTTAATAA
*
91518499 TATTTTTA-ATAAAAT
1 TATTTTTATATTAAAT
91518514 TATTTTTATATTAAAT
1 TATTTTTATATTAAAT
* *
91518530 TA-TATTATATTAAAA
1 TATTTTTATATTAAAT
91518545 TATTT
1 TATTT
91518550 CAAATATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 21 0.70
16 9 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTTTTATATTAAAT
Found at i:91519187 original size:20 final size:20
Alignment explanation
Indices: 91519133--91519190 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 20
91519123 TAAGAATTTT
* *
91519133 TTTTACTTTTGAATCAATTG
1 TTTTACTTTTGAATAAATTC
91519153 TTCTTA-TTGAATTGAATAAATTC
1 TT-TTACTT---TTGAATAAATTC
91519176 TTTTACTTTTGAATA
1 TTTTACTTTTGAATA
91519191 GATTGTTCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
20 11 0.35
21 3 0.10
22 3 0.10
23 14 0.45
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (20 bp):
TTTTACTTTTGAATAAATTC
Found at i:91520017 original size:21 final size:21
Alignment explanation
Indices: 91519991--91520041 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
91519981 CTCTTGAATA
91519991 GATTGTTTTCCTATTTCAATT
1 GATTGTTTTCCTATTTCAATT
** *
91520012 GATTGTTTTTTTATTTTAATT
1 GATTGTTTTCCTATTTCAATT
91520033 GATTGTTTT
1 GATTGTTTT
91520042 AATATCTGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.65
Consensus pattern (21 bp):
GATTGTTTTCCTATTTCAATT
Found at i:91523887 original size:24 final size:24
Alignment explanation
Indices: 91523855--91523904 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
91523845 TCTCTCTTTG
91523855 TACTCAATTATAATGGGACTCGTA
1 TACTCAATTATAATGGGACTCGTA
91523879 TACTCAATTATAATGGGACTCGTA
1 TACTCAATTATAATGGGACTCGTA
91523903 TA
1 TA
91523905 TTGCTAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (24 bp):
TACTCAATTATAATGGGACTCGTA
Found at i:91527504 original size:21 final size:22
Alignment explanation
Indices: 91527475--91527521 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
91527465 CAGAAGGAGT
*
91527475 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
91527497 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
91527518 GAGT
1 GAGT
91527522 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:91530671 original size:23 final size:23
Alignment explanation
Indices: 91530627--91530671 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91530617 ACCAATTGAA
*
91530627 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
91530650 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
91530672 CACCTACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:91535603 original size:16 final size:16
Alignment explanation
Indices: 91535584--91535629 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
91535574 GCTGTAATAG
91535584 AATAGAGGCGTAATGA
1 AATAGAGGCGTAATGA
* *
91535600 AATAGATGCGTAATGG
1 AATAGAGGCGTAATGA
91535616 AATAGAGGCGTAAT
1 AATAGAGGCGTAAT
91535630 AGGTAATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.22
Consensus pattern (16 bp):
AATAGAGGCGTAATGA
Found at i:91535698 original size:44 final size:46
Alignment explanation
Indices: 91535609--91535699 Score: 150
Period size: 44 Copynumber: 2.0 Consensus size: 46
91535599 AAATAGATGC
*
91535609 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
*
91535655 GTAATGGAATAGAGGTGTAAT-GGT-ATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
91535699 G
1 G
91535700 GAATAGAGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.47
45 3 0.07
46 20 0.47
ACGTcount: A:0.26, C:0.03, G:0.31, T:0.40
Consensus pattern (46 bp):
GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
Found at i:91535700 original size:39 final size:44
Alignment explanation
Indices: 91535609--91535715 Score: 143
Period size: 46 Copynumber: 2.5 Consensus size: 44
91535599 AAATAGATGC
* *
91535609 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGTGTAATAGGTAATTCTTGTGTTTGGTT--AT
91535655 GTAATGGAATAGAGGTGTAAT-GGT-ATTCTTGTGTTTGG-T-T
1 GTAATGGAATAGAGGTGTAATAGGTAATTCTTGTGTTTGGTTAT
91535695 G-AATGGAATAGAGGTGTAATA
1 GTAATGGAATAGAGGTGTAATA
91535716 ACATAAGGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
39 19 0.33
40 2 0.03
43 1 0.02
44 13 0.22
45 3 0.05
46 20 0.34
ACGTcount: A:0.29, C:0.03, G:0.31, T:0.37
Consensus pattern (44 bp):
GTAATGGAATAGAGGTGTAATAGGTAATTCTTGTGTTTGGTTAT
Found at i:91535868 original size:16 final size:15
Alignment explanation
Indices: 91535858--91536013 Score: 61
Period size: 17 Copynumber: 10.5 Consensus size: 15
91535848 CATAATTGTT
91535858 ATAAAATATAATTTA
1 ATAAAATATAATTTA
91535873 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
91535890 ATAAAAT-T--TTTA
1 ATAAAATATAATTTA
91535902 AT-AAATAT--TCTT-
1 ATAAAATATAAT-TTA
* * *
91535914 ATATGAAT-TTA-CTA
1 ATA-AAATATAATTTA
91535928 ATAAAATCATAATATATGA
1 ATAAAAT-ATAAT-T-T-A
91535947 TACTAAAATATAATTTA
1 -A-TAAAATATAATTTA
91535964 A-AATAAT-T-A-TT-
1 ATAA-AATATAATTTA
*
91535975 ATTAAATATAATTTA
1 ATAAAATATAATTTA
91535990 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
91536007 ATAAAAT
1 ATAAAAT
91536014 TGTTAATAAA
Statistics
Matches: 109, Mismatches: 7, Indels: 50
0.66 0.04 0.30
Matches are distributed among these distances:
11 8 0.07
12 14 0.13
13 9 0.08
14 12 0.11
15 13 0.12
16 12 0.11
17 25 0.23
18 2 0.02
19 2 0.02
20 6 0.06
21 6 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:91535903 original size:17 final size:17
Alignment explanation
Indices: 91535863--91535896 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91535853 TTGTTATAAA
91535863 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91535880 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91535897 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:91536020 original size:17 final size:17
Alignment explanation
Indices: 91535980--91536013 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91535970 TTATTATTAA
91535980 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91535997 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91536014 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:91536049 original size:117 final size:117
Alignment explanation
Indices: 91535843--91536332 Score: 795
Period size: 117 Copynumber: 4.3 Consensus size: 117
91535833 TTAATCATAT
* * * *
91535843 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTTTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
*
91535908 ATTCTTATATGAATTTACTAATAAAATCATAATATATGATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
91535960 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
91536025 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
* * *
91536077 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
91536142 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
*
91536194 TTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAA---TT-CT---
1 TTTAAAATAATTATTATTAAATATAATTTAATAA-AATATATAATTTAATAAAATTGTTAATAAA
91536252 TATTCTTATATGAATTTAC---TAAAATCATAATATATAATACTATAAAATATAA
65 TATTCTTATATGAATTTACTAATAAAATCATAATATATAATAC--TAAAATATAA
91536304 TTT-AAATAATTATTATTAAATATAATTTA
1 TTTAAAATAATTATTATTAAATATAATTTA
91536333 TAATCTACTT
Statistics
Matches: 358, Mismatches: 12, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
108 21 0.06
109 26 0.07
110 13 0.04
111 19 0.05
114 1 0.00
115 2 0.01
117 257 0.72
118 19 0.05
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (117 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
Found at i:91536112 original size:15 final size:15
Alignment explanation
Indices: 91536092--91536130 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
91536082 CATAATTGTT
91536092 ATAAAATATAATTTA
1 ATAAAATATAATTTA
91536107 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
91536124 ATAAAAT
1 ATAAAAT
91536131 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:91536137 original size:17 final size:17
Alignment explanation
Indices: 91536097--91536130 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91536087 TTGTTATAAA
91536097 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91536114 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
91536131 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:91536202 original size:20 final size:21
Alignment explanation
Indices: 91536163--91536202 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
91536153 AATTTACTAA
*
91536163 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
91536184 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
91536203 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:91536215 original size:26 final size:28
Alignment explanation
Indices: 91536170--91536249 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
91536160 TAATAAAATC
91536170 ATAATATATAATACTAAAATATAATTTAA-A
1 ATAATATATAAT--T-AAATATAATTTAATA
*
91536200 ATAAT-TATTATTAAATATAATTTAATA
1 ATAATATATAATTAAATATAATTTAATA
* *
91536227 ATAATATATAATTTAATAAAATT
1 ATAATATATAATTAAATATAATT
91536250 CTTATTCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.30
27 7 0.16
28 14 0.32
29 5 0.11
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAATATATAATTAAATATAATTTAATA
Found at i:91536282 original size:44 final size:41
Alignment explanation
Indices: 91535947--91536282 Score: 137
Period size: 43 Copynumber: 8.3 Consensus size: 41
91535937 TAATATATGA
91535947 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * *
91535988 TAATAAAATATATAATTTAATAA-AATTGTTAATAAATAT--TCT
1 TACT-AAA-ATATAATTTAA-AATAATTATTATTAAATATAAT-T
* * * *
91536030 TA-T---AT-GAATTTACTAATAA-AATCA-TAATATATAA--
1 TACTAAAATATAATTTA-AAATAATTATTATTAA-ATATAATT
* * *
91536064 TACTAAAATATAATTTAACATAATTGTTATAAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * *
91536105 TAATAAAATATATAATTTAATAA-AATTGTTAATAAATAT--TCT
1 TACT-AAA-ATATAATTTAA-AATAATTATTATTAAATATAAT-T
* * * *
91536147 TA-T---AT-GAATTTACTAATAA-AATCA-TAATATATAA--
1 TACTAAAATATAATTTA-AAATAATTATTATTAA-ATATAATT
91536181 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * **
91536222 TAATAATAATATATAATTTAATAA-AATTCTTATTCTTATATGAATT
1 TACT-A-AA-ATATAATTTAA-AATAATTATTATT-AAATAT-AATT
91536268 TACTAAAATCATAAT
1 TACTAAAAT-ATAAT
91536283 ATATAATACT
Statistics
Matches: 219, Mismatches: 33, Indels: 83
0.65 0.10 0.25
Matches are distributed among these distances:
34 10 0.05
35 30 0.14
36 8 0.04
38 13 0.06
39 29 0.13
40 5 0.02
41 13 0.06
42 13 0.06
43 54 0.25
44 30 0.14
45 7 0.03
46 7 0.03
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (41 bp):
TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
Found at i:91536328 original size:32 final size:32
Alignment explanation
Indices: 91536292--91536355 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
91536282 TATATAATAC
*
91536292 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
91536324 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
91536356 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:91541205 original size:22 final size:22
Alignment explanation
Indices: 91541175--91541217 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
91541165 AATTTACCAA
91541175 ATTTCTATAGGATACTTGTCAT
1 ATTTCTATAGGATACTTGTCAT
*
91541197 ATTTTTATAGGATACTTGTCA
1 ATTTCTATAGGATACTTGTCA
91541218 ACCCTCTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.47
Consensus pattern (22 bp):
ATTTCTATAGGATACTTGTCAT
Found at i:91542784 original size:47 final size:47
Alignment explanation
Indices: 91542729--91542821 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
91542719 TGTCACTTAG
* *
91542729 ATGAAAAATTATAAATGATTTTATATTTCGATAATCCTATTATAAAT
1 ATGAAAAATTACAAATGATTTTATATTTCGAAAATCCTATTATAAAT
*
91542776 ATGAAAAATTACAAATGATTTTATATTTCGAAAATTCTATTATAAA
1 ATGAAAAATTACAAATGATTTTATATTTCGAAAATCCTATTATAAA
91542822 AAAGTAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.41
Consensus pattern (47 bp):
ATGAAAAATTACAAATGATTTTATATTTCGAAAATCCTATTATAAAT
Found at i:91548931 original size:66 final size:66
Alignment explanation
Indices: 91548825--91548957 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
91548815 GTCAATAAAG
91548825 TCTGTCAATTCATGCATCGGTCGTTAGAGTTTCACTTTCGAGCAGTCAAAAGAATTCTGAGGTAT
1 TCTGTCAATTCATGCATCGGTCGTTAGAGTTTCACTTTCGAGCAGTCAAAAGAATTCTGAGGTAT
91548890 C
66 C
*
91548891 TCTGTCAATTCATGCATCGGTCGTTGGAGTTTCACTTTCGAGCAGTCAAAAGAATTCTGAGGTAT
1 TCTGTCAATTCATGCATCGGTCGTTAGAGTTTCACTTTCGAGCAGTCAAAAGAATTCTGAGGTAT
91548956 C
66 C
91548957 T
1 T
91548958 TCAAGGGACG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (66 bp):
TCTGTCAATTCATGCATCGGTCGTTAGAGTTTCACTTTCGAGCAGTCAAAAGAATTCTGAGGTAT
C
Found at i:91551596 original size:53 final size:53
Alignment explanation
Indices: 91551515--91551665 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91551505 CTTACACGGT
* *
91551515 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
91551570 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
91551623 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
91551666 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:91561657 original size:53 final size:53
Alignment explanation
Indices: 91561576--91561726 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
91561566 CTTACACGGT
* *
91561576 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
91561631 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
91561684 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
91561727 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:91564025 original size:16 final size:17
Alignment explanation
Indices: 91564004--91564037 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
91563994 ATGGGTTAGC
91564004 ATTAATGACTAAA-TTT
1 ATTAATGACTAAAGTTT
*
91564020 ATTAATGATTAAAGTTT
1 ATTAATGACTAAAGTTT
91564037 A
1 A
91564038 ATTATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (17 bp):
ATTAATGACTAAAGTTT
Found at i:91565320 original size:39 final size:39
Alignment explanation
Indices: 91565266--91565426 Score: 225
Period size: 39 Copynumber: 4.1 Consensus size: 39
91565256 CATCAAGGAC
* *
91565266 TCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACTGAA
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
* *
91565305 TCCGGACCAAGCCCTGGAACGGGAAATAAGCTTACCGAA
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
* * *
91565344 TCCGGACCAAGCCTTGGCACAGGAAATAAGTTTACCGAC
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
* *
91565383 TCCGGTCCAAGCCCTGGAACAGGAAATAGGTTTACC-AA
1 TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
91565421 CTCCGG
1 -TCCGG
91565427 CTCGAGCCCT
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 108 0.99
ACGTcount: A:0.31, C:0.27, G:0.25, T:0.17
Consensus pattern (39 bp):
TCCGGACCAAGCCCTGGAACAGGAAATAAGTTTACCGAA
Found at i:91566020 original size:50 final size:50
Alignment explanation
Indices: 91565966--91566065 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
91565956 AATGAAACTG
91565966 AGATGAAACAGTAGCATTAACATCTTCAGTTGCATGTATTTCATCCGGAA
1 AGATGAAACAGTAGCATTAACATCTTCAGTTGCATGTATTTCATCCGGAA
91566016 AGATGAAACAGTAGCATTAACATCTTCAGTTGCATGTATTTCATCCGGAA
1 AGATGAAACAGTAGCATTAACATCTTCAGTTGCATGTATTTCATCCGGAA
91566066 GACTTATATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (50 bp):
AGATGAAACAGTAGCATTAACATCTTCAGTTGCATGTATTTCATCCGGAA
Found at i:91567808 original size:40 final size:40
Alignment explanation
Indices: 91567753--91567856 Score: 165
Period size: 40 Copynumber: 2.6 Consensus size: 40
91567743 TCGGGCTAAG
91567753 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAA-C
*
91567793 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAAC
* *
91567833 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTG
91567857 AACGAGTAGC
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 58 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAAC
Found at i:91567820 original size:89 final size:89
Alignment explanation
Indices: 91567664--91567828 Score: 226
Period size: 89 Copynumber: 1.9 Consensus size: 89
91567654 GAATGATGTC
*
91567664 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCAAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTTGT
91567729 GCGAGATACTAATTTCGGGCTAAG
66 GCGAGATACTAATTTCGGGCTAAG
* * * ** *
91567753 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAGGCATTT
*
91567816 GTGCGAGTTACTA
64 GTGCGAGATACTA
91567829 TAACCGGGCT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
88 1 0.02
89 58 0.88
90 7 0.11
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (89 bp):
CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTTGT
GCGAGATACTAATTTCGGGCTAAG
Found at i:91567870 original size:40 final size:41
Alignment explanation
Indices: 91567753--91567870 Score: 145
Period size: 40 Copynumber: 2.9 Consensus size: 41
91567743 TCGGGCTAAG
*
91567753 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGT-GACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CTATAATC
*
91567793 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATAATC
* **
91567833 CGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATA
91567871 TCCAGTTAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
39 2 0.03
40 65 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATAATC
Found at i:91575998 original size:40 final size:40
Alignment explanation
Indices: 91575726--91575991 Score: 319
Period size: 40 Copynumber: 6.7 Consensus size: 40
91575716 TTCAATGATG
* * * *
91575726 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
91575766 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
91575806 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
91575846 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
91575886 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
91575926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
*
91575967 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91575992 AACGAGTAGC
Statistics
Matches: 209, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
39 1 0.00
40 195 0.93
41 12 0.06
42 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:91576009 original size:120 final size:119
Alignment explanation
Indices: 91575779--91576024 Score: 311
Period size: 120 Copynumber: 2.1 Consensus size: 119
91575769 GGACTAAGAT
91575779 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
** *
91575844 AATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
66 AATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAATCC-GGTTAAATC
* * ** *
91575899 CCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT
* * * *
91575963 ATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATT
65 A-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGATA-CTAAATCCGGTTAAATC
91576018 CCGAAGG
1 CCGAAGG
91576025 TATGTGATTT
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
119 18 0.16
120 90 0.82
121 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
AATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAATCCGGTTAAATC
Found at i:91576824 original size:29 final size:29
Alignment explanation
Indices: 91576788--91576845 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
91576778 CCAAAAATAG
91576788 TAGGAATGGAATTAAATAGTGAATAAATT
1 TAGGAATGGAATTAAATAGTGAATAAATT
91576817 TAGGAATGGAATTAAATAGTGAATAAATT
1 TAGGAATGGAATTAAATAGTGAATAAATT
91576846 ATGTAAACGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (29 bp):
TAGGAATGGAATTAAATAGTGAATAAATT
Found at i:91576840 original size:17 final size:17
Alignment explanation
Indices: 91576791--91576840 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
91576781 AAAATAGTAG
91576791 GAATGGAATTAAATAGT
1 GAATGGAATTAAATAGT
*
91576808 GAAT-AAATT---TAG-
1 GAATGGAATTAAATAGT
91576820 GAATGGAATTAAATAGT
1 GAATGGAATTAAATAGT
91576837 GAAT
1 GAAT
91576841 AAATTATGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
12 4 0.15
13 7 0.27
16 7 0.27
17 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (17 bp):
GAATGGAATTAAATAGT
Found at i:91606033 original size:40 final size:40
Alignment explanation
Indices: 91605989--91606272 Score: 435
Period size: 40 Copynumber: 7.1 Consensus size: 40
91605979 GCATATACAA
* *
91605989 AGCCCGGTTATAGTAACTCGCACAAATGCTTTCGGGACTT
1 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
91606029 AGCCCGGATATAGTAACTCGCACAAATGCTTTCGGGACTT
1 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* * *
91606069 AGCCCGAATATAGTAACTCGCACAAATGCTTTTGGGACTT
1 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
91606109 AGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
91606149 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
91606189 AGCCCGGATATAGTAACTCTCACAAAGGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* * * *
91606229 AGCTCGGA-ATTAGTCACTAGCACAAACGCCTTCGGGACTT
1 AGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTT
91606269 AGCC
1 AGCC
91606273 TGGTTATCAT
Statistics
Matches: 227, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 226 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
Found at i:91614801 original size:27 final size:27
Alignment explanation
Indices: 91614771--91614948 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91614761 ATATTGAGTC
* * * *
91614771 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
91614798 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
91614825 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
91614853 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
91614880 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
91614907 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
91614934 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91614949 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:91614910 original size:82 final size:81
Alignment explanation
Indices: 91614792--91614947 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91614782 TGCTATATAA
* *
91614792 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
91614857 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
91614874 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
91614938 CACTTAGTGC
65 CACTTAGTGC
91614948 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:91638610 original size:6 final size:6
Alignment explanation
Indices: 91638599--91638676 Score: 156
Period size: 6 Copynumber: 13.0 Consensus size: 6
91638589 ATTGCATGAA
91638599 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
91638647 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
91638677 TTTTCTTTAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 72 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:91638943 original size:96 final size:96
Alignment explanation
Indices: 91638801--91639016 Score: 278
Period size: 96 Copynumber: 2.2 Consensus size: 96
91638791 ATTATTGGAA
* *
91638801 TCCCATATAAGACCATATCTGGGATATGACATCGGCATCGAGATGAGATC-C-TGTGTAAGACCA
1 TCCCGTATAAGACCATATCTGGGATATGACATCGGCATCGAGATGAGATCTCATGT-CAA-ACCA
*
91638864 TATCTGGGATATGGCATCAGCATTAG-TATGAGG
64 TATCTAGGATATGGCATCAGCA-TAGATATGAGG
* * *
91638897 TCCCGTGTAAGACCATATTTGGGATATGACATCGGCAT-TAGTATGAGATCTCATGTCAAACCAT
1 TCCCGTATAAGACCATATCTGGGATATGACATCGGCATCGAG-ATGAGATCTCATGTCAAACCAT
** *
91638961 ATCTAGGATATGGCATTGGCATCGATATGAGG
65 ATCTAGGATATGGCATCAGCATAGATATGAGG
*
91638993 TCCCGTATAAGACCATGTCTGGGA
1 TCCCGTATAAGACCATATCTGGGA
91639017 CATGGCGTCA
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
95 4 0.04
96 94 0.90
97 3 0.03
98 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (96 bp):
TCCCGTATAAGACCATATCTGGGATATGACATCGGCATCGAGATGAGATCTCATGTCAAACCATA
TCTAGGATATGGCATCAGCATAGATATGAGG
Found at i:91639022 original size:48 final size:48
Alignment explanation
Indices: 91638808--91639022 Score: 238
Period size: 48 Copynumber: 4.5 Consensus size: 48
91638798 GAATCCCATA
* *
91638808 TAAGACCATATCTGGGATATGACATCGGCATCGAG-ATGAGATCCTGTG
1 TAAGACCATATCTGGGATATGGCATCGGCAT-GAGTATGAGATCCCGTG
* * *
91638856 TAAGACCATATCTGGGATATGGCATCAGCATTAGTATGAGGTCCCGTG
1 TAAGACCATATCTGGGATATGGCATCGGCATGAGTATGAGATCCCGTG
* * * * *
91638904 TAAGACCATATTTGGGATATGACATCGGCATTAGTATGAGATCTCATG
1 TAAGACCATATCTGGGATATGGCATCGGCATGAGTATGAGATCCCGTG
* * * *
91638952 TCAA-ACCATATCTAGGATATGGCATTGGCATCGA-TATGAGGTCCCGTA
1 T-AAGACCATATCTGGGATATGGCATCGGCAT-GAGTATGAGATCCCGTG
* *
91639000 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATATCTGGGATATGGC
91639023 GTCAACACCG
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
47 4 0.03
48 133 0.95
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATCGGCATGAGTATGAGATCCCGTG
Found at i:91639056 original size:96 final size:96
Alignment explanation
Indices: 91638801--91639057 Score: 247
Period size: 96 Copynumber: 2.7 Consensus size: 96
91638791 ATTATTGGAA
* * **
91638801 TCCCATATAAGACCATATCTGGGATATGACATCGGCATCGAG-ATGAGATC-CTGTGTAAGACCA
1 TCCCGTATAAGACCATATCTGGGACATGACATCAACATC-AGTATGAGATCTC-GTGTAAGACCA
* *
91638864 TATCTGGGATATGGCATCAGCATTAGTATGAGG
64 TATCTAGGATATGGCATCAGCATGAGTATGAGG
* * * ** * *
91638897 TCCCGTGTAAGACCATATTTGGGATATGACATCGGCATTAGTATGAGATCTCATGTCAA-ACCAT
1 TCCCGTATAAGACCATATCTGGGACATGACATCAACATCAGTATGAGATCTCGTGT-AAGACCAT
**
91638961 ATCTAGGATATGGCATTGGCATCGA-TATGAGG
65 ATCTAGGATATGGCATCAGCAT-GAGTATGAGG
* * * *
91638993 TCCCGTATAAGACCATGTCTGGGACATGGCGTCAACA-CCGTTATGAGA-CTTCGTGTAAGACCA
1 TCCCGTATAAGACCATATCTGGGACATGACATCAACATCAG-TATGAGATC-TCGTGTAAGACCA
91639056 TA
64 TA
91639058 GATGGGTTGT
Statistics
Matches: 134, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
95 6 0.04
96 124 0.93
97 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (96 bp):
TCCCGTATAAGACCATATCTGGGACATGACATCAACATCAGTATGAGATCTCGTGTAAGACCATA
TCTAGGATATGGCATCAGCATGAGTATGAGG
Found at i:91644084 original size:12 final size:12
Alignment explanation
Indices: 91644067--91644091 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91644057 GGCCGGGTTT
91644067 GGGGTGTTACAA
1 GGGGTGTTACAA
91644079 GGGGTGTTACAA
1 GGGGTGTTACAA
91644091 G
1 G
91644092 AAATGACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.44, T:0.24
Consensus pattern (12 bp):
GGGGTGTTACAA
Found at i:91646053 original size:6 final size:6
Alignment explanation
Indices: 91646030--91646145 Score: 78
Period size: 6 Copynumber: 18.8 Consensus size: 6
91646020 TATCAAAACT
* * * *
91646030 AGAATC AAAATG AGAATC AGAATC AGAATC AGGTGAT- AGAATC ATAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
91646079 AAAATC AGAATC AAAATT AGGTAA-C AGAATC AGAATC A-ATATC AGGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGA-ATC A-G-AATC
91646129 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
91646146 GTGACTGCAA
Statistics
Matches: 86, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 7 0.08
6 68 0.79
7 5 0.06
8 5 0.06
9 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:91646085 original size:37 final size:37
Alignment explanation
Indices: 91646029--91646136 Score: 110
Period size: 37 Copynumber: 2.9 Consensus size: 37
91646019 TTATCAAAAC
* * *
91646029 TAGAATCAAAATGAGAATCAGAATCAGAATCAGGTGA
1 TAGAATCAAAATCAAAATCAGAATCAGAATCAGGTAA
* * *
91646066 TAGAATCATAATCAAAATCAGAATCAAAATTAGGTAA
1 TAGAATCAAAATCAAAATCAGAATCAGAATCAGGTAA
* * *
91646103 CAGAATCAGAATCAATATCAGGTAA-CAGAATCAG
1 TAGAATCAAAATCAAAATCA-G-AATCAGAATCAG
91646137 AATCAGAATG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
37 48 0.83
38 8 0.14
39 2 0.03
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (37 bp):
TAGAATCAAAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:91646109 original size:25 final size:25
Alignment explanation
Indices: 91646081--91646141 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
91646071 TCATAATCAA
*
91646081 AATCAGAATCAAAATTAGGTAACAG
1 AATCAGAATCAAAATCAGGTAACAG
*
91646106 AATCAGAATCAATATCAGGTAACAG
1 AATCAGAATCAAAATCAGGTAACAG
91646131 AATCAGAATCA
1 AATCAGAATCA
91646142 GAATGTGACT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAAAATCAGGTAACAG
Found at i:91646300 original size:27 final size:26
Alignment explanation
Indices: 91646263--91646398 Score: 157
Period size: 27 Copynumber: 5.0 Consensus size: 26
91646253 ATCATGGTTG
*
91646263 CCAGAACAGATATTGTGGCAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
91646289 CCAGATACAGATATTGTGGCAGAGCAA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
91646316 CCA-ATACAGATATTTGTGGCATAGCCA
1 CCAGA-ACAGATA-TTGTGGCAGAGCCA
*
91646343 CCAGAAACAGAATATTGTGACAGAGCCA
1 CCAG-AACAG-ATATTGTGGCAGAGCCA
* *
91646371 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
91646398 C
1 C
91646399 TTAACAGAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 11
0.83 0.08 0.10
Matches are distributed among these distances:
26 14 0.15
27 54 0.57
28 23 0.24
29 4 0.04
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:91646389 original size:55 final size:54
Alignment explanation
Indices: 91646263--91646398 Score: 161
Period size: 55 Copynumber: 2.5 Consensus size: 54
91646253 ATCATGGTTG
* * * *
91646263 CCAGAA-CAGATATTGTGGCAGAGTCACCAGATACAGATATTGTGGCAGAGCAA
1 CCAGAATCAGATATTGTGGCAAAGCCACCAGAAACAGATATTGTGACAGAGCAA
* *
91646316 CC--AATACAGATATTTGTGGCATAGCCACCAGAAACAGAATATTGTGACAGAGCCA
1 CCAGAAT-CAGATA-TTGTGGCAAAGCCACCAGAAACAG-ATATTGTGACAGAGCAA
*
91646371 CCAGAATCAGATAATGTGGCAAAGCCAC
1 CCAGAATCAGATATTGTGGCAAAGCCAC
91646399 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
51 2 0.03
53 8 0.11
54 21 0.30
55 30 0.43
56 6 0.09
57 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAATCAGATATTGTGGCAAAGCCACCAGAAACAGATATTGTGACAGAGCAA
Found at i:91646684 original size:20 final size:19
Alignment explanation
Indices: 91646628--91646684 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
91646618 TAACGGGTCT
91646628 ATAATCGGCACAAAGCCCACA
1 ATAA-CGGCAC-AAGCCCACA
* **
91646649 ATATCGATACGAAGCCCACA
1 ATAACGGCAC-AAGCCCACA
91646669 ATAACGGCACACAGCC
1 ATAACGGCACA-AGCC
91646685 TTCTGTAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 1 0.04
20 24 0.86
21 3 0.11
ACGTcount: A:0.40, C:0.33, G:0.16, T:0.11
Consensus pattern (19 bp):
ATAACGGCACAAGCCCACA
Found at i:91647010 original size:27 final size:27
Alignment explanation
Indices: 91646980--91647319 Score: 376
Period size: 27 Copynumber: 12.6 Consensus size: 27
91646970 TAGCCCACGA
91646980 GGGTATCTT-GGTAATTCTACCCTACAG
1 GGGTAT-TTCGGTAATTCTACCCTACAG
* * *
91647007 GGGTATTTCAGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* **
91647034 AGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
91647061 GGGTATTTCAGTAATTCTACCGTACAC
1 GGGTATTTCGGTAATTCTACCCTACAG
* * * *
91647088 GGGTATTTCGATAATTCTAGCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
91647115 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
91647142 GGGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* ** *
91647169 GAGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
91647196 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* ** * *
91647223 GAGTATTTTAGTAATTCCACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
91647250 GGGTATTTCGATAGTTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
91647277 GGGTATTTCGGTAATTTTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
91647304 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
91647320 TTACAAATCA
Statistics
Matches: 261, Mismatches: 51, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 259 0.99
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:91647336 original size:27 final size:27
Alignment explanation
Indices: 91647277--91647428 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
91647267 TACCTTACAG
* ** *
91647277 GGGTATTTCGGTAATTTTAC-CTTACAG
1 GGGTATTTTGGTAATTTTACAAAT-CAA
91647304 GGGTATTTTGGTAATTTTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
91647331 GAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* * * *
91647358 GGGTATTTTGATAATTTTTCTAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
91647385 GGGTATTTTGGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
91647412 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
91647429 GGTAAACTAA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
27 107 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:91647359 original size:81 final size:81
Alignment explanation
Indices: 91647274--91647428 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
91647264 TTCTACCTTA
* *
91647274 CAGGGGTATTTCGGTAATTTTACCTTA-C-AGGGGTATTTTGGTAATTTTACAAATCAAGAGTAT
1 CAGGGGTATTTCGATAATTTT-CCTAATCGA-GGGTATTTTGGTAATTTTACAAATCAAGAGTAT
91647337 TTTGGTAATTTTACAAAC
64 TTTGGTAATTTTACAAAC
* * * * * *
91647355 CAGGGGTATTTTGATAATTTTTCTAATCGAGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTT
1 CAGGGGTATTTCGATAATTTTCCTAATCGAGGGTATTTTGGTAATTTTACAAATCAAGAGTATTT
91647420 TGGTAATTT
66 TGGTAATTT
91647429 GGTAAACTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.05
81 60 0.94
82 1 0.02
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (81 bp):
CAGGGGTATTTCGATAATTTTCCTAATCGAGGGTATTTTGGTAATTTTACAAATCAAGAGTATTT
TGGTAATTTTACAAAC
Found at i:91653722 original size:48 final size:48
Alignment explanation
Indices: 91653645--91653870 Score: 214
Period size: 48 Copynumber: 4.8 Consensus size: 48
91653635 CACTTAGTAA
* * * * * *
91653645 GATGCCAGTTCCATATCCTAGATATGGTCTTACATGAGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
91653693 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
** *
91653741 GATGCCAATATCATGTCCCAGACATGGTCTTAAATGGGATCATGCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA--CATATC
* * ** * * *
91653791 G-TAGCCGAT---A-G-CCCA-ACTATGGTCCTACATGGTTTCTCATGTT
1 GAT-GCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
91653834 GATGCCAATGCCATGTCCCAGACATAGTCTTACATGG
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
91653871 AATCTCACAT
Statistics
Matches: 147, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
43 10 0.07
44 3 0.02
45 18 0.12
46 2 0.01
47 2 0.01
48 97 0.66
49 3 0.02
50 12 0.08
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:91654494 original size:21 final size:23
Alignment explanation
Indices: 91654470--91654515 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
91654460 AATTAAATTA
91654470 AGATAAATT-ATA-AAAAATATG
1 AGATAAATTAATATAAAAATATG
91654491 AGATAAATTAATATTAAAAATATG
1 AGATAAATTAATA-TAAAAATATG
91654515 A
1 A
91654516 TGCAATAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 3 0.14
24 10 0.45
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (23 bp):
AGATAAATTAATATAAAAATATG
Found at i:91655238 original size:27 final size:27
Alignment explanation
Indices: 91655197--91655272 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
91655187 CAGATTTTTA
91655197 AAAAAAAATTCAACACAAAAC-CATATC
1 AAAAAAAA-TCAACACAAAACACATATC
** * *
91655224 ATTTAAAAATCAACACAAAACAGATTTC
1 A-AAAAAAATCAACACAAAACACATATC
91655252 AAAAAAAATCAACACAAAACA
1 AAAAAAAATCAACACAAAACA
91655273 AAATTAAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 31 0.76
28 10 0.24
ACGTcount: A:0.63, C:0.20, G:0.01, T:0.16
Consensus pattern (27 bp):
AAAAAAAATCAACACAAAACACATATC
Found at i:91655304 original size:24 final size:21
Alignment explanation
Indices: 91655277--91655325 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
91655267 AAAACAAAAT
91655277 TAAAACTAATCATATAAAATATAA
1 TAAAACTAA--ATA-AAAATATAA
* *
91655301 TAAAATTAAATAAATATATAA
1 TAAAACTAAATAAAAATATAA
91655322 TAAA
1 TAAA
91655326 TTGAATCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.52
22 3 0.13
24 8 0.35
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAAACTAAATAAAAATATAA
Found at i:91659140 original size:14 final size:14
Alignment explanation
Indices: 91659118--91659183 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
91659108 TTTTAGCCCG
91659118 TAAACCCTAAACTC
1 TAAACCCTAAACTC
* * *
91659132 TAAAGCCTAATCCC
1 TAAACCCTAAACTC
* *
91659146 TAAACCTTAACAC-A
1 TAAACCCTAA-ACTC
*
91659160 TAAACCCTAAAATC
1 TAAACCCTAAACTC
*
91659174 TAAAGCCTAA
1 TAAACCCTAA
91659184 CCCATGAATT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
13 1 0.03
14 37 0.95
15 1 0.03
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAACTC
Found at i:91659146 original size:21 final size:21
Alignment explanation
Indices: 91659118--91659218 Score: 73
Period size: 21 Copynumber: 4.8 Consensus size: 21
91659108 TTTTAGCCCG
91659118 TAAACCCTAAACTCTAAAGCC
1 TAAACCCTAAACTCTAAAGCC
* *
91659139 TAATCCCTAAAC-CTTAACA-CA
1 TAAACCCTAAACTC-TAA-AGCC
*
91659160 TAAACCCTAAAATCTAAAGCC
1 TAAACCCTAAACTCTAAAGCC
* * * *
91659181 T-AACCCATGAATTGTAAACCC
1 TAAACCC-TAAACTCTAAAGCC
*
91659202 TAAAACCTTAAACTCTA
1 T-AAACCCTAAACTCTA
91659219 GAAACTAAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 13
0.70 0.15 0.15
Matches are distributed among these distances:
20 7 0.12
21 41 0.68
22 8 0.13
23 4 0.07
ACGTcount: A:0.44, C:0.30, G:0.04, T:0.23
Consensus pattern (21 bp):
TAAACCCTAAACTCTAAAGCC
Found at i:91659244 original size:15 final size:15
Alignment explanation
Indices: 91659226--91659268 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
91659216 CTAGAAACTA
91659226 AAACCTTTAAACCCC
1 AAACCTTTAAACCCC
* *
91659241 AAACC-ATAAACCCT
1 AAACCTTTAAACCCC
*
91659255 AAAACTTTAAACCC
1 AAACCTTTAAACCC
91659269 TGATAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
AAACCTTTAAACCCC
Found at i:91659954 original size:73 final size:73
Alignment explanation
Indices: 91659855--91660079 Score: 174
Period size: 74 Copynumber: 3.1 Consensus size: 73
91659845 TAAAAACGCC
* *
91659855 GCAAATATGTATTAGGAG-TTCACAAAACGACACCGTTTAGCCTTGTTATTAGTGGCGTTTTGCC
1 GCAAATATGTATTAAGTGTTTC-CAAAACGACACCGTTTAGCCTTGTTATTAGTGGCGTTTTGCC
91659919 CAAAACACT
65 CAAAACACT
* **** ** *
91659928 GCAAATATGTGTTAAGTGTTTCCAAAACGGTGTCGTTTTATGTTTTG-TATTTAGTGGCG-CTT-
1 GCAAATATGTATTAAGTGTTTCCAAAACGACACCG-TTTA-GCCTTGTTA-TTAGTGGCGTTTTG
*
91659990 CCATAAAACACCT
63 CC-CAAAACA-CT
** * * * *
91660003 -CAAATATGTATTAAGAT-TTTGAAAAATGTCACCATTTTAGCCTTGTTATTAGTGGCATTTTGC
1 GCAAATATGTATTAAG-TGTTTCCAAAACGACACC-GTTTAGCCTTGTTATTAGTGGCGTTTTGC
*
91660066 CCAAAACACC
64 CCAAAACACT
91660076 GCAA
1 GCAA
91660080 TAGGCTATGC
Statistics
Matches: 114, Mismatches: 26, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
73 39 0.34
74 57 0.50
75 18 0.16
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (73 bp):
GCAAATATGTATTAAGTGTTTCCAAAACGACACCGTTTAGCCTTGTTATTAGTGGCGTTTTGCCC
AAAACACT
Found at i:91660048 original size:148 final size:148
Alignment explanation
Indices: 91659780--91660079 Score: 408
Period size: 148 Copynumber: 2.0 Consensus size: 148
91659770 GTTTTAAACA
* * * *
91659780 GCAAATATGTGTTAAGTGTTAGCAAAACGGTGCTGTTTTATGCTTTGTTTTTAGTGGCGCTTTCT
1 GCAAATATGTGTTAAGTGTTACCAAAACGGTGCTGTTTTATGCTTTGTATTTAGTGGCGCTTCCA
* *
91659845 TAAAAACGCCGCAAATATGTATTAGGAGTTCACAAAACGACACCGTTTAGCCTTGTTATTAGTGG
66 TAAAAACACCGCAAATATGTATTAAGAGTTCACAAAACGACACCGTTTAGCCTTGTTATTAGTGG
* *
91659910 CGTTTTGCCCAAAACACT
131 CATTTTGCCCAAAACACC
* *
91659928 GCAAATATGTGTTAAGTGTTTCCAAAACGGTG-TCGTTTTATGTTTTGTATTTAGTGGCGCTTCC
1 GCAAATATGTGTTAAGTGTTACCAAAACGGTGCT-GTTTTATGCTTTGTATTTAGTGGCGCTTCC
* * * * * *
91659992 AT-AAAACACCTCAAATATGTATTAAGATTTTGA-AAAATGTCACCATTTTAGCCTTGTTATTAG
65 ATAAAAACACCGCAAATATGTATTAAGA-GTTCACAAAACGACACC-GTTTAGCCTTGTTATTAG
91660055 TGGCATTTTGCCCAAAACACC
128 TGGCATTTTGCCCAAAACACC
91660076 GCAA
1 GCAA
91660080 TAGGCTATGC
Statistics
Matches: 133, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
147 32 0.24
148 101 0.76
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (148 bp):
GCAAATATGTGTTAAGTGTTACCAAAACGGTGCTGTTTTATGCTTTGTATTTAGTGGCGCTTCCA
TAAAAACACCGCAAATATGTATTAAGAGTTCACAAAACGACACCGTTTAGCCTTGTTATTAGTGG
CATTTTGCCCAAAACACC
Found at i:91660333 original size:20 final size:20
Alignment explanation
Indices: 91660290--91660340 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
91660280 CCCAACAAAA
*
91660290 TTTCCCCAAAT-CCTTAACT
1 TTTCCCCAAATCCCTAAACT
* *
91660309 TTTCCCCTAATCCCTAAATT
1 TTTCCCCAAATCCCTAAACT
91660329 TTTCCCCAAATC
1 TTTCCCCAAATC
91660341 AAAGTCGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.25, C:0.37, G:0.00, T:0.37
Consensus pattern (20 bp):
TTTCCCCAAATCCCTAAACT
Found at i:91660928 original size:31 final size:31
Alignment explanation
Indices: 91660893--91660956 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
91660883 ATCAAGTATG
91660893 AATCTTTCTCTCAATTCCTCCCATATGAGAA
1 AATCTTTCTCTCAATTCCTCCCATATGAGAA
*
91660924 AATCTTTCTCTCAATTCCTCTCATATGAGAA
1 AATCTTTCTCTCAATTCCTCCCATATGAGAA
91660955 AA
1 AA
91660957 GTTTTCCTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (31 bp):
AATCTTTCTCTCAATTCCTCCCATATGAGAA
Found at i:91662576 original size:9 final size:9
Alignment explanation
Indices: 91662562--91662589 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
91662552 ATTGTATTGC
91662562 TGTAGTTAT
1 TGTAGTTAT
91662571 TGTAGTTAT
1 TGTAGTTAT
91662580 TGTAGTTAT
1 TGTAGTTAT
91662589 T
1 T
91662590 TTATTGATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.57
Consensus pattern (9 bp):
TGTAGTTAT
Found at i:91663863 original size:9 final size:9
Alignment explanation
Indices: 91663839--91663962 Score: 121
Period size: 9 Copynumber: 14.1 Consensus size: 9
91663829 ATGTTGATTC
91663839 ACATAACTT
1 ACATAACTT
*
91663848 A-ATAACTC
1 ACATAACTT
91663856 ACATAACTT
1 ACATAACTT
* *
91663865 AAATAACTC
1 ACATAACTT
91663874 ACATAACTT
1 ACATAACTT
91663883 ACATAACTT
1 ACATAACTT
* *
91663892 ACATACCTC
1 ACATAACTT
91663901 ACATAACTT
1 ACATAACTT
91663910 ACATAACTT
1 ACATAACTT
*
91663919 ACGTAA--T
1 ACATAACTT
*
91663926 ACATAA-AT
1 ACATAACTT
* * *
91663934 AAATATCAT
1 ACATAACTT
91663943 ATCATAACTT
1 A-CATAACTT
91663953 ACATAACTT
1 ACATAACTT
91663962 A
1 A
91663963 ATTATACTTA
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
7 6 0.06
8 12 0.13
9 70 0.74
10 6 0.06
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACATAACTT
Found at i:91676530 original size:39 final size:40
Alignment explanation
Indices: 91676485--91676656 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
91676475 GCTCCTCGTT
* * *
91676485 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
91676525 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
91676564 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
91676604 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
91676644 CAAATGCCTTCGG
1 CAAATGCCTTCGG
91676657 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:91676585 original size:40 final size:39
Alignment explanation
Indices: 91676487--91676709 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
91676477 TCCTCGTTCA
* * * *
91676487 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
91676526 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
91676565 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
91676605 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
91676645 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
91676686 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
91676710 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:91676669 original size:80 final size:79
Alignment explanation
Indices: 91676485--91676709 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
91676475 GCTCCTCGTT
* * * * *
91676485 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
91676549 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
91676564 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
91676629 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
91676644 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
91676708 GA
63 GA
91676710 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:91676718 original size:41 final size:41
Alignment explanation
Indices: 91676641--91676718 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
91676631 TTTGTATCTC
* * *
91676641 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
91676682 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
91676719 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:91681599 original size:19 final size:19
Alignment explanation
Indices: 91681577--91681616 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91681567 TTAATTTTTT
*
91681577 ATAAGTTAATTTAATTCTA
1 ATAAATTAATTTAATTCTA
*
91681596 ATAAATTAATTTAATTTTA
1 ATAAATTAATTTAATTCTA
91681615 AT
1 AT
91681617 TTAAAGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
ATAAATTAATTTAATTCTA
Found at i:91688794 original size:15 final size:14
Alignment explanation
Indices: 91688763--91688820 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 14
91688753 TTTAATTTAG
91688763 ATTTGATTTT-ATGT
1 ATTTGATTTTAAT-T
91688777 ATTTGATATTTAATT
1 ATTTGAT-TTTAATT
*
91688792 ATTT--TTTTAAAT
1 ATTTGATTTTAATT
*
91688804 ATTTTATTTTTAATT
1 ATTTGA-TTTTAATT
91688819 AT
1 AT
91688821 AGTAATTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
12 10 0.27
13 1 0.03
14 7 0.19
15 17 0.46
16 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (14 bp):
ATTTGATTTTAATT
Found at i:91702878 original size:179 final size:179
Alignment explanation
Indices: 91702578--91702935 Score: 716
Period size: 179 Copynumber: 2.0 Consensus size: 179
91702568 CAATTAGTAC
91702578 ATTTTATTAGTTGAAGTCTTCCCTGTTACAGGGTGCGACTACACGGACCTTCATACATTACGATT
1 ATTTTATTAGTTGAAGTCTTCCCTGTTACAGGGTGCGACTACACGGACCTTCATACATTACGATT
91702643 TGGATATCTCCCTGTACAGGGCTTCAATACTGATGCCTTTTGTTTCTATGGAAACTAGACTCAAA
66 TGGATATCTCCCTGTACAGGGCTTCAATACTGATGCCTTTTGTTTCTATGGAAACTAGACTCAAA
91702708 AAGGAATCTATACATATATGGCATGACTTCTAAATGTCTCTGGTTAATT
131 AAGGAATCTATACATATATGGCATGACTTCTAAATGTCTCTGGTTAATT
91702757 ATTTTATTAGTTGAAGTCTTCCCTGTTACAGGGTGCGACTACACGGACCTTCATACATTACGATT
1 ATTTTATTAGTTGAAGTCTTCCCTGTTACAGGGTGCGACTACACGGACCTTCATACATTACGATT
91702822 TGGATATCTCCCTGTACAGGGCTTCAATACTGATGCCTTTTGTTTCTATGGAAACTAGACTCAAA
66 TGGATATCTCCCTGTACAGGGCTTCAATACTGATGCCTTTTGTTTCTATGGAAACTAGACTCAAA
91702887 AAGGAATCTATACATATATGGCATGACTTCTAAATGTCTCTGGTTAATT
131 AAGGAATCTATACATATATGGCATGACTTCTAAATGTCTCTGGTTAATT
91702936 TATAATGAAT
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
179 179 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (179 bp):
ATTTTATTAGTTGAAGTCTTCCCTGTTACAGGGTGCGACTACACGGACCTTCATACATTACGATT
TGGATATCTCCCTGTACAGGGCTTCAATACTGATGCCTTTTGTTTCTATGGAAACTAGACTCAAA
AAGGAATCTATACATATATGGCATGACTTCTAAATGTCTCTGGTTAATT
Found at i:91706246 original size:23 final size:24
Alignment explanation
Indices: 91706215--91706260 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
91706205 AAAAAATTGA
*
91706215 ATTTCAAGTTAA-TCAAATCAAGTT
1 ATTTCAAGTCAATTCAAAT-AAGTT
91706239 ATTT-AAGTCAATTCAAATAAGT
1 ATTTCAAGTCAATTCAAATAAGT
91706261 AATTCGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (24 bp):
ATTTCAAGTCAATTCAAATAAGTT
Found at i:91706429 original size:18 final size:20
Alignment explanation
Indices: 91706389--91706430 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
91706379 TCTCTCAACA
*
91706389 AAAATTACAAAATAATTTTT
1 AAAATTACAAAATAATTTGT
91706409 AAAATT-CAAAAT-ATTTGT
1 AAAATTACAAAATAATTTGT
91706427 AAAA
1 AAAA
91706431 ATTCCAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 6 0.29
20 6 0.29
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTACAAAATAATTTGT
Found at i:91706431 original size:19 final size:20
Alignment explanation
Indices: 91706388--91706439 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
91706378 CTCTCTCAAC
91706388 AAAAATTACAAAATAATTTT
1 AAAAATTACAAAATAATTTT
*
91706408 TAAAATT-CAAAAT-ATTTGT
1 AAAAATTACAAAATAATTT-T
*
91706427 AAAAATTCCAAAA
1 AAAAATTACAAAA
91706440 AAAAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.14
19 13 0.46
20 11 0.39
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATTACAAAATAATTTT
Found at i:91706464 original size:25 final size:25
Alignment explanation
Indices: 91706416--91706466 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
91706406 TTTAAAATTC
* * *
91706416 AAAATATTTGTAAAAATTCCAAAAA
1 AAAAAATTTGAAAAAATTACAAAAA
*
91706441 AAAAAATTTGAAAAAATTATAAAAA
1 AAAAAATTTGAAAAAATTACAAAAA
91706466 A
1 A
91706467 TTCTAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (25 bp):
AAAAAATTTGAAAAAATTACAAAAA
Found at i:91718753 original size:23 final size:22
Alignment explanation
Indices: 91718701--91718753 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
91718691 TCCACGTCTT
*
91718701 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
91718723 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
91718746 TTTCTTTT
1 TTTCTTTT
91718754 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:91722532 original size:23 final size:22
Alignment explanation
Indices: 91722480--91722532 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
91722470 TCCACGTCTT
*
91722480 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
91722502 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
91722525 TTTCTTTT
1 TTTCTTTT
91722533 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:91728597 original size:20 final size:18
Alignment explanation
Indices: 91728554--91728605 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 18
91728544 GTTTTCTATC
91728554 ATTTTTTACTTTTTAAATA
1 ATTTTTTA-TTTTTAAATA
*
91728573 ATTTTTTATTTTTAAAATT
1 ATTTTTTATTTTT-AAATA
91728592 ATTTTTTGATTTTT
1 ATTTTTT-ATTTTT
91728606 TTTAAAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.17
19 19 0.63
20 6 0.20
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
ATTTTTTATTTTTAAATA
Found at i:91742223 original size:43 final size:43
Alignment explanation
Indices: 91742162--91742280 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
91742152 GTTACATGTA
*
91742162 TCGCATACATTATGAACTCGGACCACTCAACGAGCTCAAATGC
1 TCGCATACATAATGAACTCGGACCACTCAACGAGCTCAAATGC
* * * *
91742205 TCGCATCCATAATGAACTCGGACCTCTTAACGAGCTCGAATGC
1 TCGCATACATAATGAACTCGGACCACTCAACGAGCTCAAATGC
* * * ** *
91742248 -CACATATATCACCAATTCGGACCACTCAACGAG
1 TCGCATACATAATGAACTCGGACCACTCAACGAG
91742281 TTCGGACTTC
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 24 0.39
43 38 0.61
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (43 bp):
TCGCATACATAATGAACTCGGACCACTCAACGAGCTCAAATGC
Found at i:91746695 original size:52 final size:53
Alignment explanation
Indices: 91746634--91746748 Score: 133
Period size: 52 Copynumber: 2.2 Consensus size: 53
91746624 GAAAGTCTGT
* *** *
91746634 AAGGACTATCTTATATAGGAAGTCTGTAAGGACTATCTATTGTGGAAGTC-AC
1 AAGGACTATCCTATATAGGAAGTCCACAAGGACTATCTATTGAGGAAGTCTAC
* * * * *
91746686 AAGGACTATCCTATGTGGGAAGTCCACAAGGACTGTCTATTGAGGGAGTCTGC
1 AAGGACTATCCTATATAGGAAGTCCACAAGGACTATCTATTGAGGAAGTCTAC
91746739 AAGGACTATC
1 AAGGACTATC
91746749 GGCTAAGGAA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
52 41 0.79
53 11 0.21
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (53 bp):
AAGGACTATCCTATATAGGAAGTCCACAAGGACTATCTATTGAGGAAGTCTAC
Found at i:91746699 original size:26 final size:25
Alignment explanation
Indices: 91746661--91746748 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 25
91746651 GGAAGTCTGT
91746661 AAGGACTATCTATTGTGGAAGTCAC
1 AAGGACTATCTATTGTGGAAGTCAC
91746686 AAGGACTATCCTA-TGTGGGAAGTCCAC
1 AAGGACTAT-CTATTGT-GGAAGT-CAC
* * * *
91746713 AAGGACTGTCTATTGAGGGAGTCTGC
1 AAGGACTATCTATTGTGGAAGTC-AC
91746739 AAGGACTATC
1 AAGGACTATC
91746749 GGCTAAGGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
25 13 0.25
26 27 0.51
27 13 0.25
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (25 bp):
AAGGACTATCTATTGTGGAAGTCAC
Found at i:91751797 original size:7 final size:7
Alignment explanation
Indices: 91751785--91751815 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
91751775 AGCGAGCAAC
91751785 ATGTGAT
1 ATGTGAT
91751792 ATGTGAT
1 ATGTGAT
91751799 ATGTGAT
1 ATGTGAT
91751806 ATGTGAT
1 ATGTGAT
91751813 ATG
1 ATG
91751816 AGGTAGCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (7 bp):
ATGTGAT
Found at i:91751983 original size:23 final size:23
Alignment explanation
Indices: 91751953--91752000 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
91751943 GAAAATAAGT
91751953 TATGTTGTACAAGCGGGCACAGG
1 TATGTTGTACAAGCGGGCACAGG
*
91751976 TATGTTGTACAAGTGGGCACAGG
1 TATGTTGTACAAGCGGGCACAGG
91751999 TA
1 TA
91752001 ATCTCAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (23 bp):
TATGTTGTACAAGCGGGCACAGG
Found at i:91774763 original size:29 final size:29
Alignment explanation
Indices: 91774729--91774797 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
91774719 GTCATGACCC
*
91774729 AAAGCCAAATCATCCGATTTGCATGGCCT
1 AAAGCCAAATCATCCGATATGCATGGCCT
*
91774758 GAAGCCAAATCATCCGATATGCATGGCCT
1 AAAGCCAAATCATCCGATATGCATGGCCT
91774787 AAAGCCAAATC
1 AAAGCCAAATC
91774798 GGTAAAATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (29 bp):
AAAGCCAAATCATCCGATATGCATGGCCT
Found at i:91775953 original size:10 final size:10
Alignment explanation
Indices: 91775940--91775987 Score: 71
Period size: 10 Copynumber: 4.8 Consensus size: 10
91775930 TTATTTTTGA
91775940 TTATCTTTAT
1 TTATCTTTAT
*
91775950 TTATCTTTAA
1 TTATCTTTAT
91775960 TTATCTTTAT
1 TTATCTTTAT
91775970 TTAT-TTGTAT
1 TTATCTT-TAT
91775980 TTATCTTT
1 TTATCTTT
91775988 TAAAATTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (10 bp):
TTATCTTTAT
Found at i:91775953 original size:20 final size:20
Alignment explanation
Indices: 91775928--91775987 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
91775918 TAATTCTAGG
*
91775928 ATTTATTTTTGATTATCTTT
1 ATTTATTTTTAATTATCTTT
*
91775948 ATTTATCTTTAATTATCTTT
1 ATTTATTTTTAATTATCTTT
* *
91775968 ATTTATTTGTATTTATCTTT
1 ATTTATTTTTAATTATCTTT
91775988 TAAAATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.22, C:0.07, G:0.03, T:0.68
Consensus pattern (20 bp):
ATTTATTTTTAATTATCTTT
Found at i:91776735 original size:17 final size:18
Alignment explanation
Indices: 91776703--91776736 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91776693 TTTTCCTCAT
91776703 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
91776721 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
91776737 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:91785930 original size:40 final size:40
Alignment explanation
Indices: 91785875--91786056 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
91785865 TATTCGAATG
* * *
91785875 ATATCCGAGCTAAGTCCTGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
91785915 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
91785955 AAATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
91785995 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
91786035 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
91786057 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 114 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:91797311 original size:325 final size:325
Alignment explanation
Indices: 91796721--91797341 Score: 1215
Period size: 325 Copynumber: 1.9 Consensus size: 325
91796711 ATTACCTTAT
91796721 CGTGGTTGTATCAATACTCAACCCGAGGGTTAAATACATACCTGTCCAAAATATCCATTTCACAT
1 CGTGGTTGTATCAATACTCAACCCGAGGGTTAAATACATACCTGTCCAAAATATCCATTTCACAT
91796786 CACTTACCAATACTTCTCTTTACATCTCGGATATTCCTCCATTTGAGTAGAACTTTACCTGTTGA
66 CACTTACCAATACTTCTCTTTACATCTCGGATATTCCTCCATTTGAGTAGAACTTTACCTGTTGA
91796851 ACACATCGGAATATAATTCGGATACATGGATAACTTGCATATAAGTGCCATATATGCAATCAAGC
131 ACACATCGGAATATAATTCGGATACATGGATAACTTGCATATAAGTGCCATATATGCAATCAAGC
**
91796916 AATCACGTAATCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCAT
196 AATCACGTAATCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCAT
91796981 AAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGGACTCAA
261 AAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGGACTCAA
91797046 CGTGGTTGTATCAATACTCAACCCGAGGGTTAAATACATACCTGTCCAAAATATCCATTTCACAT
1 CGTGGTTGTATCAATACTCAACCCGAGGGTTAAATACATACCTGTCCAAAATATCCATTTCACAT
91797111 CACTTACCAATACTTCTCTTTACATCTCGGATATTCCTCCATTTGAGTAGAACTTTACCTGTTGA
66 CACTTACCAATACTTCTCTTTACATCTCGGATATTCCTCCATTTGAGTAGAACTTTACCTGTTGA
91797176 ACACATCGGAATATAATTCGGATACATGGATAACTTGCATATAAGTGCCATATATGCAATCAAGC
131 ACACATCGGAATATAATTCGGATACATGGATAACTTGCATATAAGTGCCATATATGCAATCAAGC
91797241 AATCACGTAATCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCAT
196 AATCACGTAATCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCAT
*
91797306 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
261 AAGTGAACTCGGACTCAACTCAACGAGTTCAGATGC
91797342 TCAACCATTC
Statistics
Matches: 293, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
325 293 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (325 bp):
CGTGGTTGTATCAATACTCAACCCGAGGGTTAAATACATACCTGTCCAAAATATCCATTTCACAT
CACTTACCAATACTTCTCTTTACATCTCGGATATTCCTCCATTTGAGTAGAACTTTACCTGTTGA
ACACATCGGAATATAATTCGGATACATGGATAACTTGCATATAAGTGCCATATATGCAATCAAGC
AATCACGTAATCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCAT
AAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCACGAACTCGGACTCAA
Found at i:91797357 original size:46 final size:46
Alignment explanation
Indices: 91797256--91797349 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 46
91797246 CGTAATCCGC
* * *
91797256 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATGCGCAA
* *
91797302 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATGCGCAA
91797346 CCAT
1 CCAT
91797350 TCTAGTGACA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 9 0.21
45 2 0.05
46 32 0.74
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATGCGCAA
Found at i:91804506 original size:19 final size:20
Alignment explanation
Indices: 91804482--91804519 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91804472 GGTACCACCA
91804482 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91804501 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91804520 ACGACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91804864 original size:93 final size:93
Alignment explanation
Indices: 91804749--91804919 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
91804739 GCCCCTAAGT
* * * *
91804749 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACACAGACTCAACTCAA
91804814 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
91804842 GAACTCGGACTCGACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACACAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACACAGACTCAACTCAA
91804907 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91804920 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACACAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91804916 original size:46 final size:46
Alignment explanation
Indices: 91804744--91804916 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
91804734 AACCTGCCCC
* * * *
91804744 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
91804790 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
91804838 TCA-CGAACTCGGACTCGACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
91804883 TAAGTGAACACAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91804917 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:91813179 original size:49 final size:49
Alignment explanation
Indices: 91813026--91813221 Score: 223
Period size: 50 Copynumber: 3.9 Consensus size: 49
91813016 TAGCCAAAGC
* * *
91813026 TATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
91813076 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
** ** *
91813127 TATCGAGTACGTATAGTAGCCTGCACTTAGTACTACACGTGCGACCAAT
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
91813176 TATCTG-GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATC-GAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
91813222 TCACAATAGA
Statistics
Matches: 121, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
49 39 0.32
50 46 0.38
51 36 0.30
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:91813190 original size:51 final size:49
Alignment explanation
Indices: 91813039--91813221 Score: 224
Period size: 49 Copynumber: 3.7 Consensus size: 49
91813029 CTAGTACGCA
** **
91813039 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* ***
91813089 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATC-GAGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTG-GTACACG
** *
91813140 TAGTAGCCTGCACTTAGTACTACACGTGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
91813189 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
91813222 TCACAATAGA
Statistics
Matches: 111, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
49 39 0.35
50 37 0.33
51 35 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:91813214 original size:100 final size:101
Alignment explanation
Indices: 91813026--91813219 Score: 300
Period size: 100 Copynumber: 1.9 Consensus size: 101
91813016 TAGCCAAAGC
* *
91813026 TATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTA
1 TATCGAGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTA
91813091 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
66 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* ** ** **
91813127 TATCGAGTACGTATAGTAGCCTGCACTTAGTACTACACGTGCGACC-AATTATCTGGTACACGTA
1 TATCGAGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTA
91813191 GTAGCCTGCACTTAGTACTACACACGTGA
66 GTAGCCTGCACTTAGTACTACACACGTGA
91813220 CCTCACAATA
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 43 0.51
101 41 0.49
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
TATCGAGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:91816401 original size:49 final size:49
Alignment explanation
Indices: 91816338--91816498 Score: 168
Period size: 49 Copynumber: 3.3 Consensus size: 49
91816328 TCCATCAAGT
91816338 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGC
1 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGC
* ** * * * *
91816387 TGATGCCATGTCCCATACATGGTCTT-TCACTCAC-ACCTCTATA-CG-TGC
1 TGATGCCATGTCCCAGATGTGGTCTTAT-ACTGACTA--TCGAAATCGAGGC
* *
91816435 TGATGCCATGTCCTAGATGTGGTCTTATACTGACTATCGTAATCGAGGC
1 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGC
* *
91816484 CGACGCCATGTCCCA
1 TGATGCCATGTCCCA
91816499 TACATGGTCT
Statistics
Matches: 86, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
47 3 0.03
48 33 0.38
49 46 0.53
50 4 0.05
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGC
Found at i:91816456 original size:97 final size:97
Alignment explanation
Indices: 91816338--91816565 Score: 366
Period size: 97 Copynumber: 2.4 Consensus size: 97
91816328 TCCATCAAGT
* *
91816338 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGCTGATGCCATGTCCCAT
1 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGCCGACGCCATGTCCCAT
*
91816403 ACATGGTCTTTCACTCACACCTCTATACGTGC
66 ACATGGTCTTACACTCACACCTCTATACGTGC
* *
91816435 TGATGCCATGTCCTAGATGTGGTCTTATACTGACTATCGTAATCGAGGCCGACGCCATGTCCCAT
1 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGCCGACGCCATGTCCCAT
91816500 ACATGGTCTTACACTCACACCTCTATACGTGC
66 ACATGGTCTTACACTCACACCTCTATACGTGC
* * ** *
91816532 TGATTCCTTGTCCCAGACATGGTCTTACACTGAC
1 TGATGCCATGTCCCAGATGTGGTCTTATACTGAC
91816566 ACATCTCGTA
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 120 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (97 bp):
TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGCCGACGCCATGTCCCAT
ACATGGTCTTACACTCACACCTCTATACGTGC
Found at i:91816507 original size:49 final size:49
Alignment explanation
Indices: 91816338--91816565 Score: 168
Period size: 48 Copynumber: 4.7 Consensus size: 49
91816328 TCCATCAAGT
** *
91816338 TGATGCCATGTCCCAGATGTGGTCTTATACTGACTATCGAAATCGAGGC
1 TGATGCCATGTCCCAGACATGGTCTTATACTGACTATCGTAATCGAGGC
* * *
91816387 TGATGCCATGTCCCATACATGGTCTT-TCACTCAC-ACCTC-T-ATACG-TGC
1 TGATGCCATGTCCCAGACATGGTCTTAT-ACTGACTA--TCGTAAT-CGAGGC
* **
91816435 TGATGCCATGTCCTAGATGTGGTCTTATACTGACTATCGTAATCGAGGC
1 TGATGCCATGTCCCAGACATGGTCTTATACTGACTATCGTAATCGAGGC
* * * * * *
91816484 CGACGCCATGTCCCATACATGGTCTTACACTCAC-ACCTC-T-ATACG-TGC
1 TGATGCCATGTCCCAGACATGGTCTTATACTGACTA--TCGTAAT-CGAGGC
* * *
91816532 TGATTCCTTGTCCCAGACATGGTCTTACACTGAC
1 TGATGCCATGTCCCAGACATGGTCTTATACTGAC
91816566 ACATCTCGTA
Statistics
Matches: 140, Mismatches: 27, Indels: 25
0.73 0.14 0.13
Matches are distributed among these distances:
47 2 0.01
48 69 0.49
49 65 0.46
50 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (49 bp):
TGATGCCATGTCCCAGACATGGTCTTATACTGACTATCGTAATCGAGGC
Found at i:91816552 original size:48 final size:48
Alignment explanation
Indices: 91816385--91816567 Score: 183
Period size: 48 Copynumber: 3.8 Consensus size: 48
91816375 CGAAATCGAG
* *
91816385 GCTGATGCCATGTCCCATACATGGTCTTTCACTCACACCTCTATACGT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTCACACCTCTATACGT
* ** * * *
91816433 GCTGATGCCATGTCCTAGATGTGGTCTTATACTGACTA--TCGTA-ATCGAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTCAC-ACCTC-TATA-CG-T
* * *
91816482 GCCGACGCCATGTCCCATACATGGTCTTACACTCACACCTCTATACGT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTCACACCTCTATACGT
* * *
91816530 GCTGATTCCTTGTCCCAGACATGGTCTTACACTGACAC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTCACAC
91816568 ATCTCGTAGC
Statistics
Matches: 105, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
47 3 0.03
48 66 0.63
49 33 0.31
50 3 0.03
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.30
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTCACACCTCTATACGT
Found at i:91816631 original size:46 final size:46
Alignment explanation
Indices: 91816540--91816793 Score: 203
Period size: 47 Copynumber: 5.5 Consensus size: 46
91816530 GCTGATTCCT
* * *
91816540 TGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCCAATGCA
1 TGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCGATGCA
* *
91816585 TTTCCCAGACATGTCTTACACTGGCT-TACATCGCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATGCA
* * * ** *
91816631 TGTCCTAGACATGTCTTACACTAGCTCTCATCTCAATACTGATGACA
1 TGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG-CA
* * ** * **
91816678 TGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAATGTTGATGCCA
1 TGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG-CA
* * *
91816725 TGTCCCAGACATGGTTTTACACTGGCTCTCATAAT-GTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATGCA
* *
91816772 TTTCCTAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
91816794 AGCACACAAA
Statistics
Matches: 170, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
44 10 0.06
45 13 0.08
46 57 0.34
47 68 0.40
48 21 0.12
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATGCA
Found at i:91818180 original size:29 final size:29
Alignment explanation
Indices: 91818114--91818225 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
91818104 TACATACAGG
*
91818114 CATATGGCCCACTT-GGCCC-AATCTCATT
1 CATATGGCCCA-TTAGGCCCAAATCACATT
* *
91818142 TATATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* * *
91818171 CATATGGCCCATCAAGCCCAAATCACCTT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
91818200 TATATGGCCCGTTAGGCCCAAATCAC
1 CATATGGCCCATTAGGCCCAAATCAC
91818226 CTTATATACA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 2 0.03
28 15 0.21
29 53 0.76
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:91822049 original size:20 final size:20
Alignment explanation
Indices: 91822024--91822062 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
91822014 CAGGTTTTTA
91822024 TAGTTAGACCTACTGTAGCG
1 TAGTTAGACCTACTGTAGCG
91822044 TAGTTAGACCTACTGTAGC
1 TAGTTAGACCTACTGTAGC
91822063 TGCAAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (20 bp):
TAGTTAGACCTACTGTAGCG
Found at i:91824798 original size:55 final size:55
Alignment explanation
Indices: 91824692--91824798 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 55
91824682 TGCGATATGG
* *
91824692 CCATGGTCGAGCCTGCCAAAACAACACGGGCGTGTGACACGCCCGTGTGGAAGAA
1 CCATGGTCGAGCCTGCCAAAACAACACGGGCGTGTGACACGCCCATATGGAAGAA
* * * * * *
91824747 CCATGGTCGAGCTTGCCAAAATAGCTCGGGTGT-TCGATACGCCCATATGGAA
1 CCATGGTCGAGCCTGCCAAAACAACACGGGCGTGT-GACACGCCCATATGGAA
91824799 CACCTATGGT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 42 0.98
ACGTcount: A:0.26, C:0.27, G:0.29, T:0.18
Consensus pattern (55 bp):
CCATGGTCGAGCCTGCCAAAACAACACGGGCGTGTGACACGCCCATATGGAAGAA
Found at i:91831348 original size:40 final size:40
Alignment explanation
Indices: 91831044--91831348 Score: 411
Period size: 40 Copynumber: 7.7 Consensus size: 40
91831034 GCTCCTCGTT
* * *
91831044 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
91831084 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
91831124 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
91831164 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
91831204 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
91831244 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
91831283 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
91831324 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
91831349 CATCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 30 0.12
40 195 0.81
41 13 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:91839180 original size:40 final size:39
Alignment explanation
Indices: 91839136--91839387 Score: 371
Period size: 40 Copynumber: 6.3 Consensus size: 39
91839126 GCTCCTCGTT
* * *
91839136 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCA
91839176 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
91839216 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
91839256 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
*
91839296 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCC-GGTTTAGTAACTCGCA
* * * *
91839336 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
91839375 CAAATGCCTTCGG
1 CAAATGCCTTCGG
91839388 ATCTTAGTCC
Statistics
Matches: 199, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 31 0.16
40 164 0.82
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
Done.