Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 279 of 310
Found at i:91839417 original size:120 final size:120
Alignment explanation
Indices: 91839136--91839432 Score: 399
Period size: 120 Copynumber: 2.5 Consensus size: 120
91839126 GCTCCTCGTT
* * * * *
91839136 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCA
*
91839200 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
65 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
*
91839256 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCGGGACTTAACCCAG
* * *
91839321 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
** *
91839375 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TAGCACAAATGCCTTCGGGACTTA
91839433 GCCCGGACAT
Statistics
Matches: 161, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
118 17 0.11
119 49 0.30
120 93 0.58
121 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCACAAATGCCTTCGGGACTTAACCCAG
ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:91839433 original size:79 final size:79
Alignment explanation
Indices: 91839136--91839439 Score: 402
Period size: 80 Copynumber: 3.8 Consensus size: 79
91839126 GCTCCTCGTT
* * *
91839136 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCG
91839200 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
91839216 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
91839281 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* *
91839296 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA-CAATGCCTTCGGGACTTAACCCGG
* *
91839360 AATTAGTATCTCGCA
65 ATTTAGTAACTCGCA
** * * *
91839375 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCACAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCACAATGCCTTCGGGACTTAACCC
91839437 GGA
63 GGA
91839440 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
78 12 0.06
79 60 0.29
80 131 0.64
81 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:91840165 original size:42 final size:42
Alignment explanation
Indices: 91840118--91840205 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
91840108 CCCATCTACA
*
91840118 TATTTTTTTCTAGAATTTTTGATCAGGCCAATTAGTACAGTT
1 TATTTTTTTCTAGAATTTTTGATCAGGCAAATTAGTACAGTT
* * *
91840160 TATTTTTTTCTAGAATTTTTGGTCGGGCAAATTGGTACAGTT
1 TATTTTTTTCTAGAATTTTTGATCAGGCAAATTAGTACAGTT
91840202 TATT
1 TATT
91840206 AGTCAAAGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (42 bp):
TATTTTTTTCTAGAATTTTTGATCAGGCAAATTAGTACAGTT
Found at i:91841441 original size:79 final size:80
Alignment explanation
Indices: 91841341--91841525 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
91841331 GCTCCTCGTT
* * * *
91841341 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAACCC
* *
91841404 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
91841421 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCAGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGATCTTAACCCGGA
* *
91841486 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
91841501 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
91841526 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.63
80 31 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:91841525 original size:40 final size:40
Alignment explanation
Indices: 91841341--91841525 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
91841331 GCTCCTCGTT
* * *
91841341 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
91841381 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
91841421 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
91841460 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
91841501 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
91841526 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 79 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:91848374 original size:29 final size:29
Alignment explanation
Indices: 91848342--91848436 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
91848332 GGTCGGATCT
* *
91848342 CATTTATATGGCGCATCAGGCCCAATTCA
1 CATTTATATGGCCCATTAGGCCCAATTCA
* *
91848371 CATTCATATGGCCCATTAGGCCCAAATCA
1 CATTTATATGGCCCATTAGGCCCAATTCA
* *
91848400 CCTTTATATGGCCCGTTAGGCCCAATTCA
1 CATTTATATGGCCCATTAGGCCCAATTCA
91848429 C-TTTATAT
1 CATTTATAT
91848437 ACATGCTCAC
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 7 0.12
29 51 0.88
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (29 bp):
CATTTATATGGCCCATTAGGCCCAATTCA
Found at i:91848672 original size:16 final size:16
Alignment explanation
Indices: 91848648--91848690 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
91848638 GCAGCCAAAC
* * *
91848648 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTCGACA
*
91848664 TTTCGGCTTTTCGATA
1 TTTCGGCTTTTCGACA
91848680 TTTCGGCTTTT
1 TTTCGGCTTTT
91848691 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:91856123 original size:28 final size:27
Alignment explanation
Indices: 91856070--91856136 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 27
91856060 CTGTGTCCAT
*
91856070 TGCCCGTGTCTTCACACGGCCATGACA
1 TGCCCGTGTCTTCAAACGGCCATGACA
91856097 TGCCCGTGTCTCTCAAACGGCCATGACA
1 TGCCCGTGTCT-TCAAACGGCCATGACA
* *
91856125 CGCCTGTGTCTT
1 TGCCCGTGTCTT
91856137 AGCCCGTGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 12 0.33
28 24 0.67
ACGTcount: A:0.16, C:0.36, G:0.22, T:0.25
Consensus pattern (27 bp):
TGCCCGTGTCTTCAAACGGCCATGACA
Found at i:91861344 original size:40 final size:40
Alignment explanation
Indices: 91861288--91861516 Score: 320
Period size: 40 Copynumber: 5.8 Consensus size: 40
91861278 GATGATAACG
* * *
91861288 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
91861328 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
91861368 GGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
91861408 GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* **
91861448 GGGCTAAGTCCCTAAGGCATTTGTGCGAACTACT-ATAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
91861487 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
91861517 AGCTATATCC
Statistics
Matches: 170, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 29 0.17
40 141 0.83
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:91861421 original size:80 final size:80
Alignment explanation
Indices: 91861288--91861542 Score: 342
Period size: 80 Copynumber: 3.2 Consensus size: 80
91861278 GATGATAACG
* *
91861288 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCT-AGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGA-GCTAAGTCCCGAAGGCATTTGT
91861352 GCGAGTTACTA-ATTCC
65 GCGAGTTACTATA-TCC
*
91861368 GGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTAATTCTGAGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGAGCTAAGTCCCGAAGGCATTTGTG
91861433 CGAGTTACTATATCC
66 CGAGTTACTATATCC
* ** * *
91861448 GGGCTAAGTCCCTAAGGCATTTGTGCGAACTACT-ATATC-GGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCTGAGCTAAGTCCCGAAGGCATTTGT
91861511 GCGAG-TAGCTATATCC
65 GCGAGTTA-CTATATCC
* *
91861527 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
91861543 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
78 15 0.09
79 37 0.23
80 105 0.66
81 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGAGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:91868621 original size:49 final size:49
Alignment explanation
Indices: 91868564--91868664 Score: 123
Period size: 49 Copynumber: 2.1 Consensus size: 49
91868554 GGGATTACTA
** * *
91868564 ATTGTAGCTCATGGGAGCTTACCA-AATCTCAGCTCGTATGATCTTACCG
1 ATTGTAGCTCATGAAAGCTTA-CAGAATCTCAGCTCATATGAGCTTACCG
* * *
91868613 ATTGTAGCTCGTGAAAGCTTACAGATTCTCAGCTCATATGAGCTTATCG
1 ATTGTAGCTCATGAAAGCTTACAGAATCTCAGCTCATATGAGCTTACCG
91868662 ATT
1 ATT
91868665 TACAGGTCGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 2 0.05
49 42 0.95
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (49 bp):
ATTGTAGCTCATGAAAGCTTACAGAATCTCAGCTCATATGAGCTTACCG
Found at i:91870912 original size:40 final size:39
Alignment explanation
Indices: 91870814--91871076 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
91870804 TCCTCGTTCA
* * * *
91870814 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
91870853 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
91870892 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
91870932 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
91870972 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
91871012 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
91871053 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
91871077 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:91871036 original size:120 final size:119
Alignment explanation
Indices: 91870814--91871076 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
91870804 TCCTCGTTCA
* * *
91870814 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
91870879 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
91870932 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
91870997 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
91871053 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
91871077 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:91871085 original size:41 final size:41
Alignment explanation
Indices: 91871008--91871085 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
91870998 TTTGTATCTC
* * *
91871008 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
91871049 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
91871086 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:91878401 original size:44 final size:47
Alignment explanation
Indices: 91878321--91878407 Score: 117
Period size: 44 Copynumber: 1.9 Consensus size: 47
91878311 CAACCAAAAT
* *
91878321 AGTACCCAAAAGAGCCTTTGATAGTGTGGGCAACTTCGACTTCAAAG
1 AGTACCCAAAAGAGCCTTTGATAGTGTAGACAACTTCGACTTCAAAG
**
91878368 AGTA-CCAAAAGAG-C-TTGATAGTGTAGATGACTTCGACTTC
1 AGTACCCAAAAGAGCCTTTGATAGTGTAGACAACTTCGACTTC
91878408 GCTGATCCCG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 22 0.61
45 1 0.03
46 9 0.25
47 4 0.11
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (47 bp):
AGTACCCAAAAGAGCCTTTGATAGTGTAGACAACTTCGACTTCAAAG
Found at i:91878856 original size:40 final size:40
Alignment explanation
Indices: 91878803--91878900 Score: 142
Period size: 40 Copynumber: 2.5 Consensus size: 40
91878793 CAGCCGCAAA
* * *
91878803 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAACCCGGACATATCAACCCG
* * *
91878843 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAACCCGGACATATCAACCCG
91878883 CATAATTGCCTTCGGGTC
1 CATAATTGCCTTCGGGTC
91878901 ATAGGAGCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAACCCGGACATATCAACCCG
Found at i:91879022 original size:188 final size:188
Alignment explanation
Indices: 91878717--91879062 Score: 683
Period size: 188 Copynumber: 1.8 Consensus size: 188
91878707 CGGGTTGGTC
91878717 GAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTGT
1 GAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTGT
*
91878782 TTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCGCATA
66 TTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATA
91878847 ATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAATTGCCTTCGGGTCATAG
131 ATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAATTGCCTTCGGGTCATAG
91878905 GAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTGT
1 GAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTGT
91878970 TTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATA
66 TTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATA
91879035 ATTGCCTTCGGGTCTTAGCCCGGATATA
131 ATTGCCTTCGGGTCTTAGCCCGGATATA
91879063 ATCCAATGTT
Statistics
Matches: 157, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 157 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (188 bp):
GAGCATATTTATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTGT
TTAACCGAATACAGCCGCAAACATATTTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATA
ATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAATTGCCTTCGGGTCATAG
Found at i:91882235 original size:26 final size:26
Alignment explanation
Indices: 91882206--91882256 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
91882196 TAGGACAATA
91882206 CGTCGTCCGCAGCTGCTCAATCATAG
1 CGTCGTCCGCAGCTGCTCAATCATAG
** *
91882232 CGTCGTTTGCAGCTGCTCGATCATA
1 CGTCGTCCGCAGCTGCTCAATCATA
91882257 CAACCCTGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.31, G:0.24, T:0.27
Consensus pattern (26 bp):
CGTCGTCCGCAGCTGCTCAATCATAG
Found at i:91887098 original size:226 final size:226
Alignment explanation
Indices: 91886704--91887156 Score: 906
Period size: 226 Copynumber: 2.0 Consensus size: 226
91886694 TTCTTAATTA
91886704 TTTGTTCTTAATTCTTGTTTTAATATTCCAGGATATTGATTCAAGTTAACGCTCTTATTCAGAGG
1 TTTGTTCTTAATTCTTGTTTTAATATTCCAGGATATTGATTCAAGTTAACGCTCTTATTCAGAGG
91886769 AGGAATAGACCCTGTCTAAGAGTAAAATTGTCATAATTAAGCGGATTTGATTGCACGCCTAGAGA
66 AGGAATAGACCCTGTCTAAGAGTAAAATTGTCATAATTAAGCGGATTTGATTGCACGCCTAGAGA
91886834 TAGGGTGACAAGATTTTGACAGATTAGGGTGAAACTTAATAAGGGAATCTATAGATCGAGTTAAT
131 TAGGGTGACAAGATTTTGACAGATTAGGGTGAAACTTAATAAGGGAATCTATAGATCGAGTTAAT
91886899 GCAATTCTAGGGTGTTAATTAGAAAGAGATT
196 GCAATTCTAGGGTGTTAATTAGAAAGAGATT
91886930 TTTGTTCTTAATTCTTGTTTTAATATTCCAGGATATTGATTCAAGTTAACGCTCTTATTCAGAGG
1 TTTGTTCTTAATTCTTGTTTTAATATTCCAGGATATTGATTCAAGTTAACGCTCTTATTCAGAGG
91886995 AGGAATAGACCCTGTCTAAGAGTAAAATTGTCATAATTAAGCGGATTTGATTGCACGCCTAGAGA
66 AGGAATAGACCCTGTCTAAGAGTAAAATTGTCATAATTAAGCGGATTTGATTGCACGCCTAGAGA
91887060 TAGGGTGACAAGATTTTGACAGATTAGGGTGAAACTTAATAAGGGAATCTATAGATCGAGTTAAT
131 TAGGGTGACAAGATTTTGACAGATTAGGGTGAAACTTAATAAGGGAATCTATAGATCGAGTTAAT
91887125 GCAATTCTAGGGTGTTAATTAGAAAGAGATT
196 GCAATTCTAGGGTGTTAATTAGAAAGAGATT
91887156 T
1 T
91887157 CAATTATTCA
Statistics
Matches: 227, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
226 227 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (226 bp):
TTTGTTCTTAATTCTTGTTTTAATATTCCAGGATATTGATTCAAGTTAACGCTCTTATTCAGAGG
AGGAATAGACCCTGTCTAAGAGTAAAATTGTCATAATTAAGCGGATTTGATTGCACGCCTAGAGA
TAGGGTGACAAGATTTTGACAGATTAGGGTGAAACTTAATAAGGGAATCTATAGATCGAGTTAAT
GCAATTCTAGGGTGTTAATTAGAAAGAGATT
Found at i:91896074 original size:26 final size:26
Alignment explanation
Indices: 91896045--91896204 Score: 68
Period size: 26 Copynumber: 6.4 Consensus size: 26
91896035 CTCTCTCAAT
*
91896045 CCATATAA-CAGGAAGCTTACAAAGAG
1 CCAT-TAATCAGGAAGCTCACAAAGAG
* *
91896071 CCATTAATCGGGAATCTCACAAAGAG
1 CCATTAATCAGGAAGCTCACAAAGAG
* * *
91896097 CC--T-ATCATGAAGCTTATC-CAG-G
1 CCATTAATCAGGAAGCTCA-CAAAGAG
* * *
91896119 CTATATAA-CAGAAAGCTCA-TAAGAG
1 CCAT-TAATCAGGAAGCTCACAAAGAG
* * *
91896144 CCA-CAATCAGGAAGTTCACAAAGAA
1 CCATTAATCAGGAAGCTCACAAAGAG
** * **
91896169 CTTTTAATCAGGAAGCTTAGGAAGAG
1 CCATTAATCAGGAAGCTCACAAAGAG
*
91896195 CCTTTAATCA
1 CCATTAATCA
91896205 TGAGCTCTGG
Statistics
Matches: 95, Mismatches: 28, Indels: 22
0.66 0.19 0.15
Matches are distributed among these distances:
22 2 0.02
23 13 0.14
24 13 0.14
25 20 0.21
26 47 0.49
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (26 bp):
CCATTAATCAGGAAGCTCACAAAGAG
Found at i:91906620 original size:27 final size:27
Alignment explanation
Indices: 91906589--91906766 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91906579 TAAATTGTAC
91906589 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91906616 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91906642 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91906670 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91906698 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91906725 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91906752 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91906767 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91906703 original size:82 final size:81
Alignment explanation
Indices: 91906590--91906745 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91906580 AAATTGTACA
* *
91906590 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91906654 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91906671 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91906736 TGCGAGTTGA
65 TGCGAATTGA
91906746 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91906757 original size:82 final size:81
Alignment explanation
Indices: 91906586--91906766 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91906576 GATTAAATTG
* *
91906586 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91906651 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91906667 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91906731 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91906749 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91906767 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91913778 original size:27 final size:27
Alignment explanation
Indices: 91913747--91913921 Score: 199
Period size: 27 Copynumber: 6.4 Consensus size: 27
91913737 TAAATTGTAC
91913747 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91913774 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91913800 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91913828 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91913856 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91913883 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91913910 AGCACTGAGTGT
1 AGCACTAAGTGT
91913922 ACGGGCTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91913861 original size:82 final size:81
Alignment explanation
Indices: 91913748--91913903 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91913738 AAATTGTACA
* *
91913748 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91913812 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91913829 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91913894 TGCGAGTTGA
65 TGCGAATTGA
91913904 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91913915 original size:82 final size:81
Alignment explanation
Indices: 91913744--91913921 Score: 223
Period size: 82 Copynumber: 2.2 Consensus size: 81
91913734 GATTAAATTG
* *
91913744 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91913809 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91913825 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91913889 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91913907 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
91913922 ACGGGCTCAA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91916792 original size:33 final size:33
Alignment explanation
Indices: 91916750--91916814 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
91916740 TCCAAAGATA
*
91916750 GAGCATTCGACCAACCCCAAAGTGCTAGACCAC
1 GAGCATTCGACCAACCCCAAAATGCTAGACCAC
*
91916783 GAGCATTCGACCAACCCTAAAATGCTAGACCA
1 GAGCATTCGACCAACCCCAAAATGCTAGACCA
91916815 TAACGCTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.35, C:0.34, G:0.17, T:0.14
Consensus pattern (33 bp):
GAGCATTCGACCAACCCCAAAATGCTAGACCAC
Found at i:91922220 original size:19 final size:20
Alignment explanation
Indices: 91922193--91922238 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
91922183 ATATATGAAA
*
91922193 ATTTAGAATTTTT-ATAAA-T
1 ATTTTGAATTTTTGA-AAATT
91922212 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
91922232 ATTTTGA
1 ATTTTGA
91922239 TTATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:91922617 original size:23 final size:22
Alignment explanation
Indices: 91922578--91922632 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 22
91922568 ACTTTCCAAA
*
91922578 TCAATCTTTAAAACTAAATTAAC
1 TCAATC-TCAAAACTAAATTAAC
91922601 TCAATCTCAAAATCTAAATTAAC
1 TCAATCTCAAAA-CTAAATTAAC
91922624 TCAATCTCA
1 TCAATCTCA
91922633 CATCTCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (22 bp):
TCAATCTCAAAACTAAATTAAC
Found at i:91924636 original size:31 final size:31
Alignment explanation
Indices: 91924595--91924657 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
91924585 CCTTTTCATA
*
91924595 TTTCATATTTCATAACACTGGG-CAGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCA-AAGCCT
**
91924626 TTTCAAATTTCATATTACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
91924657 T
1 T
91924658 GACTGTAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:91924903 original size:24 final size:24
Alignment explanation
Indices: 91924866--91924922 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
91924856 CTGGAGGCTT
91924866 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCAAA
* *
91924891 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAA
91924915 AGCCCTTT
1 AGCCCTTT
91924923 NNNNNNNNNN
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 26 0.87
25 4 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCAAA
Found at i:91929865 original size:43 final size:43
Alignment explanation
Indices: 91929815--91929948 Score: 178
Period size: 43 Copynumber: 3.1 Consensus size: 43
91929805 TGCTAGGCTT
91929815 GAAGCCCAATATCATTTCACCGGCATTATAGCCTACTAGGCCC
1 GAAGCCCAATATCATTTCACCGGCATTATAGCCTACTAGGCCC
* * * * *
91929858 GAGGCCCAATATTATCTCACCAGCATTATAGCCTGCTAGGCCC
1 GAAGCCCAATATCATTTCACCGGCATTATAGCCTACTAGGCCC
* * * *
91929901 GAAGCCCGATATCATTTCACTGACATTATAGCCTTCTAGGCCC
1 GAAGCCCAATATCATTTCACCGGCATTATAGCCTACTAGGCCC
*
91929944 AAAGC
1 GAAGC
91929949 TCGTATATCA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (43 bp):
GAAGCCCAATATCATTTCACCGGCATTATAGCCTACTAGGCCC
Found at i:91930815 original size:69 final size:70
Alignment explanation
Indices: 91930731--91930864 Score: 207
Period size: 69 Copynumber: 1.9 Consensus size: 70
91930721 TAGCACATAA
* * * * * *
91930731 CACCATGATTTTGTCCTAATTTGGAGAGCCAAT-ATTTTCAGTATTACAGCAGCATATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
91930795 CTAAG
66 CTAAG
91930800 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
91930865 TAATAAACTA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 30 0.52
70 28 0.48
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
CTAAG
Found at i:91931192 original size:31 final size:31
Alignment explanation
Indices: 91931154--91931217 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
91931144 AGGTATTAAG
91931154 TAGAAAATAAAAACATTATTAGCATGCATGC
1 TAGAAAATAAAAACATTATTAGCATGCATGC
91931185 TAGAAAATAAAAACATTATTAGCATGCATGC
1 TAGAAAATAAAAACATTATTAGCATGCATGC
91931216 TA
1 TA
91931218 TCTACATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.27
Consensus pattern (31 bp):
TAGAAAATAAAAACATTATTAGCATGCATGC
Found at i:91934269 original size:15 final size:15
Alignment explanation
Indices: 91934249--91934279 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
91934239 AAAAAAATTT
91934249 CCTTGTACATGAGCA
1 CCTTGTACATGAGCA
91934264 CCTTGTACATGAGCA
1 CCTTGTACATGAGCA
91934279 C
1 C
91934280 AAAGATCGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (15 bp):
CCTTGTACATGAGCA
Found at i:91938107 original size:27 final size:27
Alignment explanation
Indices: 91938077--91938254 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91938067 ATATTGAGTC
* * * *
91938077 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
91938104 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
91938131 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
91938159 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
91938186 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
91938213 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
91938240 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91938255 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:91938216 original size:82 final size:81
Alignment explanation
Indices: 91938098--91938253 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91938088 TGCTATATAA
* *
91938098 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
91938163 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
91938180 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
91938244 CACTTAGTGC
65 CACTTAGTGC
91938254 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:91945861 original size:27 final size:27
Alignment explanation
Indices: 91945822--91946028 Score: 324
Period size: 27 Copynumber: 7.6 Consensus size: 27
91945812 NNNNTAAGTC
* * *
91945822 CGCACACTCAGTGCTATATAATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
91945849 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
91945877 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
91945904 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
91945932 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
91945959 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* *
91945987 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
91946014 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91946029 GCACAATTTA
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:91945907 original size:55 final size:55
Alignment explanation
Indices: 91945822--91946028 Score: 369
Period size: 55 Copynumber: 3.8 Consensus size: 55
91945812 NNNNTAAGTC
* * * *
91945822 CGCACACTCAGTGCTATATAATCAATTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
91945877 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
91945932 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
*
91945987 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
91946029 GCACAATTTA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:91952693 original size:36 final size:36
Alignment explanation
Indices: 91952653--91952728 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
91952643 GTCGGTATCG
91952653 CTTGTAAAACTACTTTGATAAGTATCTCCTTTCCAC
1 CTTGTAAAACTACTTTGATAAGTATCTCCTTTCCAC
*
91952689 CTTGTAAAACTACTTTGATAAGTATCTCTTTTCCAC
1 CTTGTAAAACTACTTTGATAAGTATCTCCTTTCCAC
91952725 CTTG
1 CTTG
91952729 AGATACTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (36 bp):
CTTGTAAAACTACTTTGATAAGTATCTCCTTTCCAC
Found at i:91969863 original size:27 final size:27
Alignment explanation
Indices: 91969833--91969894 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
91969823 AGCCTATCAA
* * *
91969833 GAAAGTAAAAATAGGGTAGTCCATTGG
1 GAAAATAAAAATAGAGTAATCCATTGG
* *
91969860 GAAAATAAACATAGAGTAATTCATTGG
1 GAAAATAAAAATAGAGTAATCCATTGG
*
91969887 GACAATAA
1 GAAAATAA
91969895 TCACGAGGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.47, C:0.08, G:0.23, T:0.23
Consensus pattern (27 bp):
GAAAATAAAAATAGAGTAATCCATTGG
Found at i:91975400 original size:17 final size:17
Alignment explanation
Indices: 91975378--91975411 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91975368 ATTGGAGGAC
91975378 TCTCATTCTAGTCTTTG
1 TCTCATTCTAGTCTTTG
91975395 TCTCATTCTAGTCTTTG
1 TCTCATTCTAGTCTTTG
91975412 GTGACCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.53
Consensus pattern (17 bp):
TCTCATTCTAGTCTTTG
Found at i:91978254 original size:46 final size:46
Alignment explanation
Indices: 91978199--91978326 Score: 229
Period size: 46 Copynumber: 2.8 Consensus size: 46
91978189 GGTTGAGCAT
* *
91978199 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
91978245 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
*
91978291 ACGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
91978327 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
Found at i:91985765 original size:46 final size:46
Alignment explanation
Indices: 91985715--91985890 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91985705 TGGTTGAGCA
91985715 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91985761 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91985806 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91985854 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91985891 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91985871 original size:93 final size:93
Alignment explanation
Indices: 91985712--91985883 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91985702 GGATGGTTGA
* *
91985712 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91985777 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
91985805 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91985870 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91985884 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91993339 original size:46 final size:46
Alignment explanation
Indices: 91993289--91993464 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91993279 TGGTTGAGCA
91993289 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91993335 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91993380 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91993428 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91993465 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91993445 original size:93 final size:93
Alignment explanation
Indices: 91993286--91993457 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91993276 GGATGGTTGA
* *
91993286 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91993351 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
91993379 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91993444 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91993458 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91998409 original size:25 final size:25
Alignment explanation
Indices: 91998380--91998429 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
91998370 GCCACAAAAG
91998380 TGACTCTTCATTAATTGTCAACCTA
1 TGACTCTTCATTAATTGTCAACCTA
91998405 TGACTCTTCATTAATTGTCAACCTA
1 TGACTCTTCATTAATTGTCAACCTA
91998430 AACTTTAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (25 bp):
TGACTCTTCATTAATTGTCAACCTA
Found at i:92002005 original size:13 final size:13
Alignment explanation
Indices: 92001987--92002016 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
92001977 AAACATATTT
92001987 AAAACATAACTTG
1 AAAACATAACTTG
*
92002000 AAAACATATCTTG
1 AAAACATAACTTG
92002013 AAAA
1 AAAA
92002017 TAGAGTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:92011743 original size:25 final size:28
Alignment explanation
Indices: 92011693--92011744 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 28
92011683 CAATATTTTT
*
92011693 GTATGAAAATTGATATGATAGGAAAATC
1 GTATGAAAATTGATATGATAGAAAAATC
92011721 GTATGAAAA-T-AT-TGATAGAAAAAT
1 GTATGAAAATTGATATGATAGAAAAAT
92011745 TTTACCGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
27 1 0.04
28 9 0.39
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (28 bp):
GTATGAAAATTGATATGATAGAAAAATC
Found at i:92012265 original size:11 final size:10
Alignment explanation
Indices: 92012122--92012276 Score: 60
Period size: 10 Copynumber: 15.9 Consensus size: 10
92012112 TAAAATATTT
*
92012122 AAAAATTATT
1 AAAAATTATA
*
92012132 AAAAATTA-G
1 AAAAATTATA
92012141 AAAAATATATA
1 AAAAAT-TATA
**
92012152 TAAAAATCGTA
1 -AAAAATTATA
*
92012163 AAAAA-TATG
1 AAAAATTATA
*
92012172 AAATA-TAT-
1 AAAAATTATA
*
92012180 AAAAATATAGA
1 AAAAAT-TATA
92012191 AATAAATTATA
1 AA-AAATTATA
**
92012202 AAATTTTATA
1 AAAAATTATA
* **
92012212 GAAACGTA-A
1 AAAAATTATA
*
92012221 GAAAATTATA
1 AAAAATTATA
92012231 AAAAATGTA-A
1 AAAAAT-TATA
*
92012241 AGAAA-TAT-
1 AAAAATTATA
92012249 -AAAATTCATA
1 AAAAATT-ATA
92012259 AAAAATTAT-
1 AAAAATTATA
92012268 AAAAATTAT
1 AAAAATTAT
92012277 GGTATCAAAA
Statistics
Matches: 109, Mismatches: 22, Indels: 29
0.68 0.14 0.18
Matches are distributed among these distances:
7 3 0.03
8 7 0.06
9 32 0.29
10 40 0.37
11 17 0.16
12 10 0.09
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:92019578 original size:54 final size:54
Alignment explanation
Indices: 92019516--92019625 Score: 175
Period size: 54 Copynumber: 2.0 Consensus size: 54
92019506 GAAAACTGAG
*
92019516 TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAATTATAAT
1 TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAACTATAAT
* * **
92019570 TTAGTTTATTTTAGGTTTTAGCTATAGTGTTCATGCATTGCATCTAACTATAAT
1 TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAACTATAAT
92019624 TT
1 TT
92019626 TCATTTTGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (54 bp):
TTAGTTTATTTTAAGTTTTAGCTATAGTCTTCACACATTGCATCTAACTATAAT
Found at i:92022877 original size:104 final size:104
Alignment explanation
Indices: 92022657--92022877 Score: 316
Period size: 104 Copynumber: 2.1 Consensus size: 104
92022647 TTATTTTCCA
** * * * * *
92022657 TTATTAAGGCTTGCTGATTTAAGATCGCAGCCTCCAATTATTTGAGTTAGCTGATTTAATATCGC
1 TTATTAAGGCTCACTGATTTAAGATCCCAACCTCCAATTATTTGAGTTAGCTAATTTAAGATCAC
* *
92022722 AACTCCTAACAGCTCGCTGACCTACGTTCACAACTGATT
66 AACTCCTAACAGCTCGCTGACCTACGTTCACAACTAATG
* * **
92022761 TTACTAACGCTCACTGATTTAAGATCCCAACCTCTGATTATTTGAGTTAGCTAATTTAAGATCAC
1 TTATTAAGGCTCACTGATTTAAGATCCCAACCTCCAATTATTTGAGTTAGCTAATTTAAGATCAC
*
92022826 AACTCCTAACAGCTCGCTGACCTACGTTCACAGCTAATG
66 AACTCCTAACAGCTCGCTGACCTACGTTCACAACTAATG
92022865 TTATTAAGGCTCA
1 TTATTAAGGCTCA
92022878 TTGACCTACA
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
104 101 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (104 bp):
TTATTAAGGCTCACTGATTTAAGATCCCAACCTCCAATTATTTGAGTTAGCTAATTTAAGATCAC
AACTCCTAACAGCTCGCTGACCTACGTTCACAACTAATG
Found at i:92022892 original size:36 final size:36
Alignment explanation
Indices: 92022843--92022917 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
92022833 AACAGCTCGC
*
92022843 TGACCTACGTTCACAGCTAATGTTATTAAGGCTCAT
1 TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
* * *
92022879 TGACCTACATTCACTGCTGATTTTATTAAGGCTCAT
1 TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
92022915 TGA
1 TGA
92022918 TTTAAGAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (36 bp):
TGACCTACATTCACAGCTAATGTTATTAAGGCTCAT
Found at i:92022932 original size:140 final size:140
Alignment explanation
Indices: 92022739--92023017 Score: 398
Period size: 140 Copynumber: 2.0 Consensus size: 140
92022729 AACAGCTCGC
* * *
92022739 TGACCTACGTTCACAACTGATTTTACTAACGCTCACTGATTTAAGATCCCAACC-TCTGATTATT
1 TGACCTACATTCACAACTGATTTTACTAACGCTCACTGATTTAAGAACACAACCTTC-GATTATT
* *
92022803 TGAGTTAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTGACCTACGTTCACAGCTAATGTTA
65 TGAGATAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTAACCTACGTTCACAGCTAATGTTA
*
92022868 TTAAGGCTCAT
130 CTAAGGCTCAT
** * * *
92022879 TGACCTACATTCACTGCTGATTTTATTAAGGCTCATTGATTTAAGAACACAACCTTCGATTATTT
1 TGACCTACATTCACAACTGATTTTACTAACGCTCACTGATTTAAGAACACAACCTTCGATTATTT
* * * * *
92022944 GAGATAGCTGATTTAAGATCGCAACTCCTAACAGCTCGCTAACTTACGTTCATAGCTAATTTTAC
66 GAGATAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTAACCTACGTTCACAGCTAATGTTAC
92023009 TAAGGCTCA
131 TAAGGCTCA
92023018 CTGATTTAAG
Statistics
Matches: 122, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
140 120 0.98
141 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (140 bp):
TGACCTACATTCACAACTGATTTTACTAACGCTCACTGATTTAAGAACACAACCTTCGATTATTT
GAGATAGCTAATTTAAGATCACAACTCCTAACAGCTCGCTAACCTACGTTCACAGCTAATGTTAC
TAAGGCTCAT
Found at i:92023328 original size:18 final size:18
Alignment explanation
Indices: 92023305--92023339 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92023295 TGGCCGTATG
*
92023305 GCTAGGCTGTGTGACATA
1 GCTAGGCTGTGTAACATA
*
92023323 GCTAGGTTGTGTAACAT
1 GCTAGGCTGTGTAACAT
92023340 TCAAACAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.31
Consensus pattern (18 bp):
GCTAGGCTGTGTAACATA
Found at i:92026262 original size:20 final size:20
Alignment explanation
Indices: 92026218--92026255 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
92026208 TATTATATAC
92026218 TTTTGAAGTCATTTTATAAT
1 TTTTGAAGTCATTTTATAAT
92026238 TTTTGAA-T-ATTTTATAAT
1 TTTTGAAGTCATTTTATAAT
92026256 AGTTTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (20 bp):
TTTTGAAGTCATTTTATAAT
Found at i:92026314 original size:31 final size:31
Alignment explanation
Indices: 92026244--92026314 Score: 74
Period size: 33 Copynumber: 2.2 Consensus size: 31
92026234 TAATTTTTGA
* *
92026244 ATATTTTATAATAGTTTTGTATTTTTTGTTT
1 ATATTTTATAATAGTTTTGAATTTTTTATTT
92026275 ATAAATTTTAATAA-A-TTTTGAATTTTTATATTT
1 AT--ATTTT-ATAATAGTTTTGAATTTTT-TATTT
92026308 ATATTTT
1 ATATTTT
92026315 GAATTTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
31 7 0.21
32 11 0.32
33 12 0.35
34 4 0.12
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (31 bp):
ATATTTTATAATAGTTTTGAATTTTTTATTT
Found at i:92026321 original size:53 final size:48
Alignment explanation
Indices: 92026228--92026353 Score: 128
Period size: 51 Copynumber: 2.5 Consensus size: 48
92026218 TTTTGAAGTC
* * **
92026228 ATTTTATAATTTTTGAATATTTTATAATAGTTTTGTATTTTTTGTTTAT
1 ATTTTATAAATTTTGAAT-TTTTATAATAGTTTTGAATTTTTTAATTAT
92026277 AAATTTTAATAAATTTTGAATTTTTATATTTATA-TTTTGAATTTTTTAATTAT
1 --ATTTT-ATAAATTTTGAATTTTTATA---ATAGTTTTGAATTTTTTAATTAT
*
92026330 ATTTGATAAATATTTGAATTTTTA
1 ATTTTATAAAT-TTTGAATTTTTA
92026354 GAATCAAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
50 6 0.09
51 28 0.43
52 12 0.18
53 16 0.25
54 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (48 bp):
ATTTTATAAATTTTGAATTTTTATAATAGTTTTGAATTTTTTAATTAT
Found at i:92026329 original size:20 final size:20
Alignment explanation
Indices: 92026280--92026333 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
92026270 TGTTTATAAA
*
92026280 TTTTAA-TAAATTTTGAATT
1 TTTTAATTATATTTTGAATT
*
92026299 TTTATATTTATATTTTGAATT
1 TTT-TAATTATATTTTGAATT
92026320 TTTTAATTATATTT
1 TTTTAATTATATTT
92026334 GATAAATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.10
20 12 0.40
21 15 0.50
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTTAATTATATTTTGAATT
Found at i:92029521 original size:76 final size:76
Alignment explanation
Indices: 92029440--92029582 Score: 209
Period size: 76 Copynumber: 1.9 Consensus size: 76
92029430 GTGTATATTA
* *
92029440 ATATTAAAAA-GCAGACTCACTTGATTATATTTAGAACTTAATTTAAAAAT-ATGACCCACTTCA
1 ATATTAAAAATG-AGACTCACTTGATCATATTTAAAACTTAATTTAAAAATGA-GACCCACTTCA
92029503 AATATAACTATAT
64 AATATAACTATAT
* * *
92029516 ATATTAAAAATGGGACTCACTTTATCATATTTAAAACTTAATTTAAAAATGAGACCCACTTTAAA
1 ATATTAAAAATGAGACTCACTTGATCATATTTAAAACTTAATTTAAAAATGAGACCCACTTCAAA
92029581 TA
66 TA
92029583 GTTAAAAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
76 58 0.97
77 2 0.03
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (76 bp):
ATATTAAAAATGAGACTCACTTGATCATATTTAAAACTTAATTTAAAAATGAGACCCACTTCAAA
TATAACTATAT
Found at i:92029577 original size:39 final size:40
Alignment explanation
Indices: 92029437--92029578 Score: 113
Period size: 39 Copynumber: 3.7 Consensus size: 40
92029427 TTTGTGTATA
* * * *
92029437 TTAATATTAAAAA-GCAGACTCACTTGATTATATTTAGAAC
1 TTAATATTAAAAATG-AGACCCACTTTATCATATTTAAAAC
* *
92029477 TTAAT-TTAAAAAT-ATGACCCAC--T-TCA-A-ATATAAC
1 TTAATATTAAAAATGA-GACCCACTTTATCATATTTAAAAC
* *
92029511 TATATATATTAAAAATGGGACTCACTTTATCATATTTAAAAC
1 T-TA-ATATTAAAAATGAGACCCACTTTATCATATTTAAAAC
92029553 TTAAT-TTAAAAATGAGACCCACTTTA
1 TTAATATTAAAAATGAGACCCACTTTA
92029579 AATAGTTAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
34 6 0.08
35 3 0.04
36 4 0.05
37 14 0.17
38 1 0.01
39 33 0.41
40 10 0.12
41 3 0.04
42 6 0.08
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (40 bp):
TTAATATTAAAAATGAGACCCACTTTATCATATTTAAAAC
Found at i:92030267 original size:21 final size:22
Alignment explanation
Indices: 92030243--92030297 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
92030233 AAAAGGGGCC
92030243 TAAAACA-ACATCAAAACACAT
1 TAAAACACACATCAAAACACAT
** *
92030264 TAAAACATGC-TCAAAACATAT
1 TAAAACACACATCAAAACACAT
*
92030285 CAAAACACACATC
1 TAAAACACACATC
92030298 TTAAGTGCCT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.56, C:0.25, G:0.02, T:0.16
Consensus pattern (22 bp):
TAAAACACACATCAAAACACAT
Found at i:92032985 original size:10 final size:9
Alignment explanation
Indices: 92032943--92032983 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
92032933 TGTTAAACCA
92032943 TTTTAAAAT
1 TTTTAAAAT
92032952 TTTT--AAT
1 TTTTAAAAT
*
92032959 TTTT-ATAT
1 TTTTAAAAT
92032967 TTTTAAAAT
1 TTTTAAAAT
92032976 TTTTAAAA
1 TTTTAAAA
92032984 ATAATTATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 7 0.25
8 6 0.21
9 15 0.54
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:92034832 original size:49 final size:48
Alignment explanation
Indices: 92034750--92035075 Score: 251
Period size: 50 Copynumber: 6.5 Consensus size: 48
92034740 TGAGGTCACG
* * *
92034750 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTT-CA
*** * *
92034799 TGTGCAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCA
1 TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-TTGGTTCA
* *** **
92034848 CGTGTGGAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGG-TCA
1 --TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATT-GGTTCA
* * *
92034898 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 --TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTT-CA
*** * *
92034949 TGTGCAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCA
1 TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-TTGGTTCA
* *** **
92034998 CGTGTGGAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGG-TCA
1 --TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATT-GGTTCA
*
92035048 CGTGTGTAGTACTAAGTGCAGGCTACTA
1 --TGTGCAGTACTAAGTGCAGGCTACTA
92035076 TGCATACCAG
Statistics
Matches: 223, Mismatches: 44, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
49 74 0.33
50 83 0.37
51 66 0.30
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTTCA
Found at i:92035013 original size:150 final size:150
Alignment explanation
Indices: 92034742--92035075 Score: 659
Period size: 150 Copynumber: 2.2 Consensus size: 150
92034732 ATCTATTGTG
92034742 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
1 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
92034807 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
92034872 ACTACGTGTATTAGATGGTT
131 ACTACGTGTATTAGATGGTT
92034892 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
1 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
92034957 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
92035022 ACTACGTGTATTAGATGGTT
131 ACTACGTGTATTAGATGGTT
*
92035042 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
92035076 TGCATACCAG
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 183 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
ACTACGTGTATTAGATGGTT
Found at i:92035103 original size:101 final size:100
Alignment explanation
Indices: 92034742--92035137 Score: 345
Period size: 101 Copynumber: 4.0 Consensus size: 100
92034732 ATCTATTGTG
* * * * ** *
92034742 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATA--ATTGGTTGCATGTGCA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGCTTTGGTCACGTGTG-A
*** *
92034805 GTACTAAGTGCAGGCTACTATACGTACCCGATAACTT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * ** * *
92034842 CGATCACGTGTGGAGTACTAAGTGCAGGCTACTACGTGTATTAGAT-GGTTAGGTCACGTGTGTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGCTTTGGTCACGTGTG-A
* *
92034906 GTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * ** * * * *
92034942 -GGTTGCATGTGCAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGCTTTGGTCACGTGT-GA
** **
92035006 GTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
92035042 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAGCTTTGG-CTACGTGT-A
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGCTTTGGTC-ACGTGTGA
* * *
92035105 GTACTAACTGCAGGCTACTATGCGTACCAGATA
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATA
92035138 GCCTTGTCTA
Statistics
Matches: 235, Mismatches: 55, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
99 62 0.26
100 84 0.36
101 89 0.38
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGCTTTGGTCACGTGTGAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:92035108 original size:150 final size:149
Alignment explanation
Indices: 92034742--92035137 Score: 641
Period size: 150 Copynumber: 2.6 Consensus size: 149
92034732 ATCTATTGTG
92034742 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
1 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTT-CATGTGCAGT
92034807 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
65 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
92034872 ACTACGTGTATTAGATGGTT
130 ACTACGTGTATTAGATGGTT
92034892 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGCAGT
1 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTT-CATGTGCAGT
92034957 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
65 ACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCT
92035022 ACTACGTGTATTAGATGGTT
130 ACTACGTGTATTAGATGGTT
* * ** * * * * *
92035042 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAGCTTTGGCT-ACGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATA--ATTGGTTCATGTGCAG
* * *
92035106 TACTAACTGCAGGCTACTATGCGTACCAGATA
64 TACTAAGTGCAGGCTACTATACGTACCCGATA
92035138 GCCTTGTCTA
Statistics
Matches: 232, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
150 227 0.98
152 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (149 bp):
AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTCATGTGCAGTA
CTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACGTGTGGAGTACTAAGTGCAGGCTA
CTACGTGTATTAGATGGTT
Found at i:92058702 original size:114 final size:114
Alignment explanation
Indices: 92058502--92058731 Score: 424
Period size: 114 Copynumber: 2.0 Consensus size: 114
92058492 TCGAAGGCGC
92058502 GCTCACACTATCAACAAACTATTTCGGTATAATGACTTGTATATTTTGGGAATATGGCATGTATA
1 GCTCACACTATCAACAAACTATTTCGGTATAATGACTTGTATATTTTGGGAATATGGCATGTATA
* *
92058567 ACATTATAATCATTTTGTGTATATAATCTTATGATATGGCTCATGGATG
66 ACATTACAATCATTTTGTGTATATAATCCTATGATATGGCTCATGGATG
92058616 GCTCACACTATCAACAAACTATTTCGGTATAATGACTTGTATATTTTGGGAATATGGCATGTATA
1 GCTCACACTATCAACAAACTATTTCGGTATAATGACTTGTATATTTTGGGAATATGGCATGTATA
* *
92058681 ACATTACAATCATTTTGTGTATATACTCCTATGTTATGGCTCATGGATG
66 ACATTACAATCATTTTGTGTATATAATCCTATGATATGGCTCATGGATG
92058730 GC
1 GC
92058732 ATGGAAATGT
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (114 bp):
GCTCACACTATCAACAAACTATTTCGGTATAATGACTTGTATATTTTGGGAATATGGCATGTATA
ACATTACAATCATTTTGTGTATATAATCCTATGATATGGCTCATGGATG
Found at i:92065954 original size:32 final size:32
Alignment explanation
Indices: 92065918--92065982 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
92065908 TGTATGCATT
*
92065918 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGGTAATGGATGATGGGCA
92065950 TTAGCATTTTAATAGGTAATGGATGATGGGCA
1 TTAGCATTTTAATAGGTAATGGATGATGGGCA
92065982 T
1 T
92065983 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (32 bp):
TTAGCATTTTAATAGGTAATGGATGATGGGCA
Found at i:92067493 original size:26 final size:26
Alignment explanation
Indices: 92067464--92067516 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
92067454 TTTACAATTT
92067464 TACCCCTAGGAGTTAAATT-ACCGAAA
1 TACCCCTAGG-GTTAAATTGACCGAAA
*
92067490 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGTTAAATTGACCGAAA
92067516 T
1 T
92067517 GCATGTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGTTAAATTGACCGAAA
Found at i:92070049 original size:15 final size:15
Alignment explanation
Indices: 92070026--92070061 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
92070016 TATATATGAA
* *
92070026 ATATGATATGATATT
1 ATATTATATCATATT
92070041 ATATTATATCATATT
1 ATATTATATCATATT
92070056 ATATTA
1 ATATTA
92070062 ATTTTGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (15 bp):
ATATTATATCATATT
Found at i:92070422 original size:19 final size:20
Alignment explanation
Indices: 92070384--92070428 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
92070374 ATTTAATATA
92070384 ACATTTTGTACTTAAATTTG
1 ACATTTTGTACTTAAATTTG
* *
92070404 ACATTTTTTTCTT-AATTTG
1 ACATTTTGTACTTAAATTTG
*
92070423 ATATTT
1 ACATTT
92070429 AATTTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.58
Consensus pattern (20 bp):
ACATTTTGTACTTAAATTTG
Found at i:92070473 original size:25 final size:26
Alignment explanation
Indices: 92070417--92070480 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 26
92070407 TTTTTTTCTT
* * *
92070417 AATTTGATATTTAATTTTTTTGGGTTT
1 AATTTGATACTTAATTTTTTT-GATTC
92070444 AATTTGATACTTAATTTTTTT-ATTC
1 AATTTGATACTTAATTTTTTTGATTC
* *
92070469 GATTTGGTACTT
1 AATTTGATACTT
92070481 GTCAAATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 12 0.38
27 20 0.62
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.59
Consensus pattern (26 bp):
AATTTGATACTTAATTTTTTTGATTC
Found at i:92075220 original size:28 final size:28
Alignment explanation
Indices: 92075188--92075283 Score: 97
Period size: 28 Copynumber: 3.5 Consensus size: 28
92075178 AATGGTGGAC
*
92075188 AGTGCAAGCCAAAGTGGTAGATAGTCCA
1 AGTGCAAGCCAAAGTGGTAGACAGTCCA
* *
92075216 AGTGCAAGCCAAAAAT-GTGGACAGTCCA
1 AGTGCAAGCC-AAAGTGGTAGACAGTCCA
* ** * *
92075244 TGTAAAAGCC-AAGTGGTAAACAATCCA
1 AGTGCAAGCCAAAGTGGTAGACAGTCCA
92075271 AGTGCAAGCCAAA
1 AGTGCAAGCCAAA
92075284 ATAGTGGACA
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
26 3 0.06
27 16 0.31
28 29 0.56
29 4 0.08
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.16
Consensus pattern (28 bp):
AGTGCAAGCCAAAGTGGTAGACAGTCCA
Found at i:92079224 original size:23 final size:23
Alignment explanation
Indices: 92079194--92079306 Score: 115
Period size: 23 Copynumber: 5.0 Consensus size: 23
92079184 GGCTTTGCCA
* *
92079194 ATCAGGCACTTTATGCGTCGTAT
1 ATCAAGCACTTTATGTGTCGTAT
*
92079217 ATCAGGCACTTTATGTGTCGTAT
1 ATCAAGCACTTTATGTGTCGTAT
*
92079240 TTCAAGCACTTTATGTGTCGTAT
1 ATCAAGCACTTTATGTGTCGTAT
* * *
92079263 TTCAAGCACCTCATGTGTC--AT
1 ATCAAGCACTTTATGTGTCGTAT
* * *
92079284 TTTAGGCAC-TTATGTGTCGTAT
1 ATCAAGCACTTTATGTGTCGTAT
92079306 A
1 A
92079307 CTGATCAAGT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.10
21 9 0.11
22 2 0.03
23 60 0.76
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (23 bp):
ATCAAGCACTTTATGTGTCGTAT
Found at i:92079279 original size:46 final size:44
Alignment explanation
Indices: 92079199--92079306 Score: 128
Period size: 46 Copynumber: 2.4 Consensus size: 44
92079189 TGCCAATCAG
* * * *
92079199 GCACTTTATGCGTCGTATATCAGGCACTTTATGTGTCGTATTTCAA
1 GCACTTTATGTGTCGTATATCAAGCACCTCATGTGTC--ATTTCAA
* * *
92079245 GCACTTTATGTGTCGTATTTCAAGCACCTCATGTGTCATTTTAG
1 GCACTTTATGTGTCGTATATCAAGCACCTCATGTGTCATTTCAA
92079289 GCAC-TTATGTGTCGTATA
1 GCACTTTATGTGTCGTATA
92079307 CTGATCAAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 13 0.24
44 9 0.17
46 32 0.59
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (44 bp):
GCACTTTATGTGTCGTATATCAAGCACCTCATGTGTCATTTCAA
Found at i:92079501 original size:18 final size:19
Alignment explanation
Indices: 92079478--92079517 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
92079468 AATGAATTAT
*
92079478 AAATTGAAATGTGA-ATTG
1 AAATTGAAATATGAGATTG
*
92079496 AAATTGAGATATGAGATTG
1 AAATTGAAATATGAGATTG
92079515 AAA
1 AAA
92079518 GCTTGAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (19 bp):
AAATTGAAATATGAGATTG
Found at i:92080199 original size:22 final size:22
Alignment explanation
Indices: 92080173--92080241 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
92080163 TCTTTGATTA
*
92080173 TTAGCACATTAGTGCTCTCCGT
1 TTAGCACATTAGTGCTCTCTGT
*
92080195 TTAGCACATCT-GTGCTATCTGT
1 TTAGCACAT-TAGTGCTCTCTGT
* * *
92080217 ATAACACTTTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
92080239 TTA
1 TTA
92080242 ATAGTGCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:92083474 original size:178 final size:178
Alignment explanation
Indices: 92083169--92083529 Score: 704
Period size: 178 Copynumber: 2.0 Consensus size: 178
92083159 GTTCTGTATC
92083169 TTGAGATAAAAATAATTAAGTGACTATGATGCCGATTGAAAGCTTGAGTATTCATATAAGTAAAT
1 TTGAGATAAAAATAATTAAGTGACTATGATGCCGATTGAAAGCTTGAGTATTCATATAAGTAAAT
*
92083234 AGTAAAAATTATAGATAATGTTACTTACAGGTGTGTTATATACTGATAATGCTCTTGAATAATGT
66 AGTAAAAATTATAGATAATGTTACTTACAGGTGTGTTATATACTGATAATGCTCTAGAATAATGT
92083299 ATTTTTATGTATTAATCATGTGTTTATTCTGGGCTTGATCCTACTAAT
131 ATTTTTATGTATTAATCATGTGTTTATTCTGGGCTTGATCCTACTAAT
92083347 TTGAGATAAAAATAATTAAGTGACTATGATGCCGATTGAAAGCTTGAGTATTCATATAAGTAAAT
1 TTGAGATAAAAATAATTAAGTGACTATGATGCCGATTGAAAGCTTGAGTATTCATATAAGTAAAT
*
92083412 AGTAAAAATTATAGATAATGTTACTTACCGGTGTGTTATATACTGATAATGCTCTAGAATAATGT
66 AGTAAAAATTATAGATAATGTTACTTACAGGTGTGTTATATACTGATAATGCTCTAGAATAATGT
92083477 ATTTTTATGTATTAATCATGTGTTTATTCTGGGCTTGATCCTACTAAT
131 ATTTTTATGTATTAATCATGTGTTTATTCTGGGCTTGATCCTACTAAT
92083525 TTGAG
1 TTGAG
92083530 CTATTTATGT
Statistics
Matches: 181, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
178 181 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (178 bp):
TTGAGATAAAAATAATTAAGTGACTATGATGCCGATTGAAAGCTTGAGTATTCATATAAGTAAAT
AGTAAAAATTATAGATAATGTTACTTACAGGTGTGTTATATACTGATAATGCTCTAGAATAATGT
ATTTTTATGTATTAATCATGTGTTTATTCTGGGCTTGATCCTACTAAT
Found at i:92083802 original size:20 final size:20
Alignment explanation
Indices: 92083774--92083821 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
92083764 ATTTTAGGAT
*
92083774 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
92083793 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
92083813 TTTATCTTT
1 TTTATCTTT
92083822 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:92087653 original size:241 final size:241
Alignment explanation
Indices: 92087211--92087680 Score: 859
Period size: 241 Copynumber: 2.0 Consensus size: 241
92087201 ATTATGTAGA
92087211 CACCAGATCTGAAATTAAAACCACTTCCCGAACATCTCAAATGCACATTTTTGGAGAATGATGAG
1 CACCAGATCTGAAATTAAAACCACTTCCCGAACATCTCAAATGCACATTTTTGGAGAATGATGAG
92087276 ACCATTGCCGACTTAAAAGGGATCAACCCCTTGGAGGAAAATACAGAACCAAAGAAAGAGGCGCA
66 ACCATTGCCGACTTAAAAGGGATCAACCCCTTGGAGGAAAATACAGAACCAAAGAAAGAGGCGCA
* * *
92087341 AGAACAATTAAACCCAAATATGGTGGACGTGTTAAAAAATGAGAATTTTCAAGCTCATAAGAACA
131 AGAACAATTAAACCCAAATATGGTGGACGTGATAAAAAATGAGAATTTCCAAGCCCATAAGAACA
92087406 AAAGAATTCAGCTGGAACAGCCCCAATACTAGTTCTGTTGTGCAGG
196 AAAGAATTCAGCTGGAACAGCCCCAATACTAGTTCTGTTGTGCAGG
92087452 CACCAGATCTGAAATTAAAACCACTTCCCGAACATCTCAAATGCACATTTTTGGAGAATGATGAG
1 CACCAGATCTGAAATTAAAACCACTTCCCGAACATCTCAAATGCACATTTTTGGAGAATGATGAG
*
92087517 ACCATTGCCGACTTAAAAGGGATCAACCCCTTGGAGGAAAATACAGAACCAAAGAAAGAGGCGTA
66 ACCATTGCCGACTTAAAAGGGATCAACCCCTTGGAGGAAAATACAGAACCAAAGAAAGAGGCGCA
* * * **
92087582 AGGACTATTAAACCCAAATATGGTGGACGTGATAAAAAATGAGAATTTCCAAGCCCATACGAATG
131 AGAACAATTAAACCCAAATATGGTGGACGTGATAAAAAATGAGAATTTCCAAGCCCATAAGAACA
92087647 AAAGAATTCAGCTGGAACAGCCCCAATACTAGTT
196 AAAGAATTCAGCTGGAACAGCCCCAATACTAGTT
92087681 GAGGCGTCAA
Statistics
Matches: 220, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
241 220 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (241 bp):
CACCAGATCTGAAATTAAAACCACTTCCCGAACATCTCAAATGCACATTTTTGGAGAATGATGAG
ACCATTGCCGACTTAAAAGGGATCAACCCCTTGGAGGAAAATACAGAACCAAAGAAAGAGGCGCA
AGAACAATTAAACCCAAATATGGTGGACGTGATAAAAAATGAGAATTTCCAAGCCCATAAGAACA
AAAGAATTCAGCTGGAACAGCCCCAATACTAGTTCTGTTGTGCAGG
Found at i:92087753 original size:15 final size:14
Alignment explanation
Indices: 92087733--92087779 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
92087723 GCAACCCAAT
92087733 TTTTATTTTTATTTA
1 TTTTATTTTTA-TTA
*
92087748 TTTTA-TCTTATTA
1 TTTTATTTTTATTA
*
92087761 TCTTATTATTTATTA
1 TTTTATT-TTTATTA
92087776 TTTT
1 TTTT
92087780 CAGATATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 7 0.27
14 5 0.19
15 14 0.54
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:92088685 original size:9 final size:9
Alignment explanation
Indices: 92088671--92088705 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
92088661 ATTGTATAAC
92088671 AAAAAGAAA
1 AAAAAGAAA
92088680 AAAAAGAAACA
1 AAAAAG-AA-A
92088691 AAAAAGAAA
1 AAAAAGAAA
92088700 AAAAAG
1 AAAAAG
92088706 TCATATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 13 0.54
10 4 0.17
11 7 0.29
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:92090544 original size:46 final size:46
Alignment explanation
Indices: 92090494--92090669 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
92090484 TGGTTGAGCA
92090494 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92090540 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
92090585 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
92090633 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92090670 GAAGGTTACG
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92090650 original size:93 final size:93
Alignment explanation
Indices: 92090491--92090661 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
92090481 GGATGGTTGA
* *
92090491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92090556 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
92090584 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92090649 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
92090662 ACTTATGGGA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:92091887 original size:10 final size:10
Alignment explanation
Indices: 92091872--92091899 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
92091862 AGGATTTAAT
92091872 TTTAATTATC
1 TTTAATTATC
92091882 TTTAATTATC
1 TTTAATTATC
92091892 TTTAATTA
1 TTTAATTA
92091900 ATTGTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTAATTATC
Found at i:92095594 original size:46 final size:44
Alignment explanation
Indices: 92095541--92095697 Score: 132
Period size: 46 Copynumber: 3.5 Consensus size: 44
92095531 TCATTTGTGT
*
92095541 GCTAGTGTAAGACATGTCTGGGACATACATTGGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-CA-TGGCCATATGATGAGA
*
92095587 GCTAGTGTAAGACCATGTCT-GG-CATCA--G-CAT-TGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATCATGGCCATAT--GATGAGA
*
92095628 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCAAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACAT-CAT-GGCCAT-ATGATG-AGA
* *
92095674 GCCAGTATAAGACATGTCTGGGAC
1 GCTAGTGTAAGACATGTCTGGGAC
92095698 GTGCATCGAC
Statistics
Matches: 92, Mismatches: 6, Indels: 26
0.74 0.05 0.21
Matches are distributed among these distances:
39 1 0.01
40 10 0.11
41 20 0.22
42 3 0.03
43 2 0.02
44 2 0.02
45 3 0.03
46 42 0.46
47 9 0.10
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATCATGGCCATATGATGAGA
Found at i:92095703 original size:46 final size:44
Alignment explanation
Indices: 92095635--92095745 Score: 143
Period size: 46 Copynumber: 2.5 Consensus size: 44
92095625 AGAGCTAGTG
*
92095635 TAAGACATGTCTGGGACATGCATCGGCCT-CAAGATGTAAGCCAGTA
1 TAAGACATGTCTGGGACATGCATC-GACTACAAGATGT--GCCAGTA
* * *
92095681 TAAGACATGTCTGGGACGTGCATCGACTACATGATGTGTCAGTA
1 TAAGACATGTCTGGGACATGCATCGACTACAAGATGTGCCAGTA
92095725 TAAGACCATGTCTGGGACATG
1 TAAGA-CATGTCTGGGACATG
92095746 GAATTGGCAA
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
44 11 0.19
45 17 0.29
46 30 0.52
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGACTACAAGATGTGCCAGTA
Found at i:92097668 original size:27 final size:28
Alignment explanation
Indices: 92097638--92097883 Score: 196
Period size: 27 Copynumber: 9.1 Consensus size: 28
92097628 ATACTTTAGT
* *
92097638 TTACTAAAATACCCTTAG-TTTGTAAAA
1 TTACTGAAATACCCTTCGATTTGTAAAA
* *
92097665 TTACTGAAATA-CCTTTGACTTGTAAAA
1 TTACTGAAATACCCTTCGATTTGTAAAA
* * * * *
92097692 TTAC-CAAAGCACCC-CCGGTTTATAAAA
1 TTACTGAAA-TACCCTTCGATTTGTAAAA
* *
92097719 TTA-TCGAAATA-CCGTCGA-TTATAAAA
1 TTACT-GAAATACCCTTCGATTTGTAAAA
92097745 TTACTGAAATACCC-TCGATTTGTAAAA
1 TTACTGAAATACCCTTCGATTTGTAAAA
* *
92097772 TTACCGAAATACCC-TC-AGTTTGCAAAA
1 TTACTGAAATACCCTTCGA-TTTGTAAAA
92097799 TTACTGAAATACCC-TCGATTTGTAAAA
1 TTACTGAAATACCCTTCGATTTGTAAAA
* *
92097826 TTACTGAAATATCCTT-GACTTGTAAAA
1 TTACTGAAATACCCTTCGATTTGTAAAA
* * *
92097853 TTAC-CAAAGTACCC-CCGATTTATAAAA
1 TTACTGAAA-TACCCTTCGATTTGTAAAA
92097880 TTAC
1 TTAC
92097884 CCAAATATTC
Statistics
Matches: 179, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
26 35 0.20
27 137 0.77
28 7 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (28 bp):
TTACTGAAATACCCTTCGATTTGTAAAA
Found at i:92097799 original size:80 final size:81
Alignment explanation
Indices: 92097638--92097883 Score: 286
Period size: 80 Copynumber: 3.0 Consensus size: 81
92097628 ATACTTTAGT
* * * * *
92097638 TTACTAAAATACCCT-TAGTTTGTAAAATTACTGAAATACCTTTGACTTGTAAAATTACCAAAGC
1 TTACTGAAATACCCTCGA-TTTATAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGT
* *
92097702 ACCCCCGGTTTATAAAA
65 ACCCCCAGTTTACAAAA
* * *
92097719 TTA-TCGAAATACCGTCGA-TTATAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAA-
1 TTACT-GAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGACTTGTAAAATTACC-AAAG
* *
92097781 TACCCTCAGTTTGCAAAA
64 TACCCCCAGTTTACAAAA
* *
92097799 TTACTGAAATACCCTCGATTTGTAAAATTACTGAAATATCCTTGACTTGTAAAATTACCAAAGTA
1 TTACTGAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGTA
*
92097864 CCCCC-GATTTATAAAA
66 CCCCCAG-TTTACAAAA
92097880 TTAC
1 TTAC
92097884 CCAAATATTC
Statistics
Matches: 138, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
80 69 0.50
81 68 0.49
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
TTACTGAAATACCCTCGATTTATAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGTA
CCCCCAGTTTACAAAA
Found at i:92097811 original size:54 final size:53
Alignment explanation
Indices: 92097638--92097890 Score: 233
Period size: 54 Copynumber: 4.7 Consensus size: 53
92097628 ATACTTTAGT
* * * * *
92097638 TTACTAAAATACCCT-TAGTTTGTAAAATTACTGAAATACCTTTGACTTGTAAAA
1 TTACTGAAATACCCTCGA-TTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAA
* * * * * * * *
92097692 TTAC-CAAAGCACCCCCGGTTTATAAAATTATCGAAATACCGTCGATTATAAAA
1 TTACTGAAA-TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAA
* *
92097745 TTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAA
1 TTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTGTAAAA
* * *
92097799 TTACTGAAATACCCTCGATTTGTAAAATTACTGAAATATCCTTGACTTGTAAAA
1 TTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAA
* * * *
92097853 TTAC-CAAAGTACCCCCGATTTATAAAATTACCCAAATA
1 TTACTGAAA-TACCCTCGATTTGTAAAATTACCGAAATA
92097891 TTCTCGACTA
Statistics
Matches: 162, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
53 46 0.28
54 116 0.72
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAA
Found at i:92098180 original size:27 final size:27
Alignment explanation
Indices: 92097995--92098306 Score: 271
Period size: 27 Copynumber: 11.6 Consensus size: 27
92097985 TTAGTTTACC
* *
92097995 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
92098021 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* *
92098048 AAATTA-TCGAAATACCGTCGA-TTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
92098074 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
92098101 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
92098128 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
92098155 AAATTACTGAAATATCCTTGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
92098182 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** **
92098209 AAATTACCCAAATATTCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
92098236 AAATTACCGAAATACCC-CTATATGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
* * **
92098263 GAATTACTGAAATACCCTTG-TAGGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
*
92098290 GAATTACTGAAATACCC
1 AAATTACTGAAATACCC
92098307 CTGTAGGGTA
Statistics
Matches: 238, Mismatches: 36, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.01
26 42 0.18
27 185 0.78
28 8 0.03
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:92098188 original size:81 final size:81
Alignment explanation
Indices: 92097995--92098252 Score: 319
Period size: 81 Copynumber: 3.2 Consensus size: 81
92097985 TTAGTTTACC
* *
92097995 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTA-TCGA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACT-GA
* *
92098058 AATACCGTCGA-TTATA
65 AATACCCTCGATTTGTA
* * **
92098074 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTC-AGTTTGCAAAATTACTG
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCCCGA-TTTATAAAATTACTG
92098137 AAATACCCTCGATTTGTA
64 AAATACCCTCGATTTGTA
* * **
92098155 AAATTACTGAAATATCCTTGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACTGAA
**
92098220 ATATTCTCGATTTGTA
66 ATACCCTCGATTTGTA
*
92098236 AAATTACCGAAATACCC
1 AAATTACTGAAATACCC
92098253 CTATATGGTA
Statistics
Matches: 153, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
79 18 0.12
80 46 0.30
81 88 0.58
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACTGAA
ATACCCTCGATTTGTA
Found at i:92098311 original size:27 final size:27
Alignment explanation
Indices: 92098237--92098593 Score: 464
Period size: 27 Copynumber: 13.3 Consensus size: 27
92098227 CGATTTGTAA
* *
92098237 AATTACCGAAATACCCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
92098264 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
92098291 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
92098318 AATTACCGGAATACGCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
92098345 AGTTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * **
92098372 AATTTCTGGAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
92098399 AATTACTGAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
92098426 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
92098453 AATTACCGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
92098480 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
92098507 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
92098534 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
92098561 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
92098587 AATTACC
1 AATTACC
92098594 ATTTTGCCCC
Statistics
Matches: 290, Mismatches: 40, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 16 0.06
27 274 0.94
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:92099073 original size:6 final size:6
Alignment explanation
Indices: 92099001--92099126 Score: 53
Period size: 6 Copynumber: 20.3 Consensus size: 6
92098991 TTGCATTCAC
* * * * *
92099001 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTTTG AGTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
92099051 -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG ATTCTG -TCACGTA ATTTTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
*
92099101 ATTCTG ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
92099127 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 20, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 67 0.76
7 13 0.15
8 3 0.03
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:92104604 original size:41 final size:40
Alignment explanation
Indices: 92104506--92104707 Score: 163
Period size: 43 Copynumber: 4.9 Consensus size: 40
92104496 TTTTATCAAA
* *
92104506 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAA-TCAT
*** * * *
92104546 TCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAA-TCAT
* *
92104587 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGA-ATCA-T
*** *
92104629 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TCACCGGCATT-TAGCCTGCTAGGCTTTAAGCCCGA-ATCAT
* * * *
92104671 CCCACCGGCAATATAGCCTGCTAGGCCTGAAGCCCGA
1 -TCACCGGC-ATTTAGCCTGCTAGGCTTTAAGCCCGA
92104708 TAATATTATT
Statistics
Matches: 132, Mismatches: 24, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
40 31 0.23
41 30 0.23
42 14 0.11
43 55 0.42
44 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAATCAT
Found at i:92104660 original size:43 final size:43
Alignment explanation
Indices: 92104586--92104709 Score: 178
Period size: 43 Copynumber: 2.9 Consensus size: 43
92104576 TCTGAACTCA
* *
92104586 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* *
92104628 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
** *
92104671 CCCACCGGCAATATAGCCTGCTAGGCCTGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
92104710 ATATTATTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 12 0.16
43 61 0.84
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:92106659 original size:14 final size:15
Alignment explanation
Indices: 92106630--92106659 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
92106620 CAAAATTTAG
92106630 ACATGATACTTTCAC
1 ACATGATACTTTCAC
92106645 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
92106659 A
1 A
92106660 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:92111137 original size:41 final size:40
Alignment explanation
Indices: 92111037--92111139 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
92111027 CTTTTATCAA
* *
92111037 ATCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTC
1 ATCACCGGCATTTAGCCTGCTAGATTTTAAACCCGAACTC
** ** *
92111077 ATCACCGGCATAAAGCCTGCTAGATTTTAAGTCTGAACTC
1 ATCACCGGCATTTAGCCTGCTAGATTTTAAACCCGAACTC
92111117 ATTCACCGGCATTTCA-CCTGCTA
1 A-TCACCGGCATTT-AGCCTGCTA
92111140 AGCTTGAAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
40 34 0.65
41 17 0.33
42 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (40 bp):
ATCACCGGCATTTAGCCTGCTAGATTTTAAACCCGAACTC
Found at i:92111191 original size:43 final size:43
Alignment explanation
Indices: 92111133--92111241 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
92111123 CGGCATTTCA
* ** *
92111133 CCTGCTAAGCTTGAAGCCCGATATCATTTCACCAGCATTATAG
1 CCTGCTAAGCCTGAAGCCCGATATCATCCCACCAGCAATATAG
* * **
92111176 CCTGCTATGCCTGAAGCCCGATATTATCCCACTGGCAATATAG
1 CCTGCTAAGCCTGAAGCCCGATATCATCCCACCAGCAATATAG
* *
92111219 CCTGCTAGGCCCGAAGCCCGATA
1 CCTGCTAAGCCTGAAGCCCGATA
92111242 ATATTATTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (43 bp):
CCTGCTAAGCCTGAAGCCCGATATCATCCCACCAGCAATATAG
Found at i:92113194 original size:14 final size:15
Alignment explanation
Indices: 92113165--92113194 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
92113155 CAAAATTTAG
92113165 ACATGATACTTTCAC
1 ACATGATACTTTCAC
92113180 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
92113194 A
1 A
92113195 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:92116195 original size:44 final size:44
Alignment explanation
Indices: 92116068--92116210 Score: 152
Period size: 44 Copynumber: 3.3 Consensus size: 44
92116058 GACGTTCCGA
* *
92116068 ACATGGTCTTACATGT-AAT-TCAGTATCGATGCCTCTGTCCCAG
1 ACATGGTCTTACACGTAAATCTCA-TATCGATGCCTATGTCCCAG
* * **
92116111 ACAGGGTCTTA-AC-AAAATCAGATAT-GATGCCTATGTCCCAG
1 ACATGGTCTTACACGTAAATCTCATATCGATGCCTATGTCCCAG
* * *
92116152 ACATGGTCTTACACGTAAATCTCAAATCGAGGCCTGTGTCCCAG
1 ACATGGTCTTACACGTAAATCTCATATCGATGCCTATGTCCCAG
*
92116196 ACACGGTCTTACACG
1 ACATGGTCTTACACG
92116211 ATAGCTCAGA
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
41 25 0.31
42 9 0.11
43 19 0.23
44 28 0.35
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (44 bp):
ACATGGTCTTACACGTAAATCTCATATCGATGCCTATGTCCCAG
Found at i:92118919 original size:17 final size:17
Alignment explanation
Indices: 92118897--92118930 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92118887 CTTTTGCTCC
92118897 CCCTGTTTCCTTTATAT
1 CCCTGTTTCCTTTATAT
92118914 CCCTGTTTCCTTTATAT
1 CCCTGTTTCCTTTATAT
92118931 GAAAATAGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.29, G:0.06, T:0.53
Consensus pattern (17 bp):
CCCTGTTTCCTTTATAT
Found at i:92119397 original size:50 final size:50
Alignment explanation
Indices: 92119274--92119418 Score: 184
Period size: 50 Copynumber: 2.9 Consensus size: 50
92119264 AGCCAAAGCT
* * * * * **
92119274 ATCTGGTACGCATAGTAGCCTACACTTAATACTACACATGCGACC-AATT
1 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
92119323 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
92119373 ATCTGATACGCGTAGTAGCCTGCACTTAGTACTACACGCGTGACCT
1 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
92119419 CACAATAGAT
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 38 0.46
50 44 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (50 bp):
ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:92120460 original size:168 final size:168
Alignment explanation
Indices: 92120182--92120519 Score: 658
Period size: 168 Copynumber: 2.0 Consensus size: 168
92120172 AGCTTGGATG
92120182 TGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAATT
1 TGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAATT
*
92120247 ATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTGAGCTTCGA
66 ATTTGAATATGATATTTATTGTCTAAAACATGTGAATATGAATGTGTGAAAGTTTTGAGCTTCGA
92120312 TTTAGTCGATTGCATGTGAAGTTAATTAATAGGACTTA
131 TTTAGTCGATTGCATGTGAAGTTAATTAATAGGACTTA
*
92120350 TGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCGTTAAACCGAGTCACCAAATT
1 TGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAATT
92120415 ATTTGAATATGATATTTATTGTCTAAAACATGTGAATATGAATGTGTGAAAGTTTTGAGCTTCGA
66 ATTTGAATATGATATTTATTGTCTAAAACATGTGAATATGAATGTGTGAAAGTTTTGAGCTTCGA
92120480 TTTAGTCGATTGCATGTGAAGTTAATTAATAGGACTTA
131 TTTAGTCGATTGCATGTGAAGTTAATTAATAGGACTTA
92120518 TG
1 TG
92120520 TGTGGCACTT
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (168 bp):
TGACAGCCCTAAAATGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAATT
ATTTGAATATGATATTTATTGTCTAAAACATGTGAATATGAATGTGTGAAAGTTTTGAGCTTCGA
TTTAGTCGATTGCATGTGAAGTTAATTAATAGGACTTA
Found at i:92122798 original size:47 final size:49
Alignment explanation
Indices: 92122712--92122845 Score: 139
Period size: 50 Copynumber: 2.8 Consensus size: 49
92122702 GAAAGTGTAT
* * * * *
92122712 ATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATATG-A-ACATGC
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATATGTAGACATAC
* *
92122759 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTATGAGATAT
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTA-GACATAC
* * *
92122809 GTATATGTGGTAAAGCCGAATGGATAGTGTGAAATAT
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
92122846 GTAGGCGATG
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.01
47 34 0.47
48 1 0.01
50 37 0.51
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (49 bp):
ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTAGACATAC
Found at i:92130110 original size:44 final size:43
Alignment explanation
Indices: 92130030--92130128 Score: 101
Period size: 44 Copynumber: 2.3 Consensus size: 43
92130020 GTTCCGGACG
* * * * *
92130030 TGGTCTTACATGTAATTCAGTATCGATGCCTATGTCCTAGACA
1 TGGTCTTACACGTAATTCAGAATCGAGGCCTATGTCCCAAACA
*
92130073 TGGTCTTACACGTAAATCTCA-AATCGAGGCCTGTGTCCCAAACA
1 TGGTCTTACACGT-AAT-TCAGAATCGAGGCCTATGTCCCAAACA
**
92130117 CAGTCTTACACG
1 TGGTCTTACACG
92130129 ATATCTTAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 12 0.26
44 31 0.67
45 3 0.07
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
TGGTCTTACACGTAATTCAGAATCGAGGCCTATGTCCCAAACA
Found at i:92133033 original size:47 final size:47
Alignment explanation
Indices: 92132961--92133093 Score: 182
Period size: 47 Copynumber: 2.8 Consensus size: 47
92132951 TCATTTGTGT
92132961 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-TACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATACGAGA
* *
92133007 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CA-TTGATACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAT-ATACGAGA
* *
92133055 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT
92133094 GATGTGTCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
46 20 0.27
47 29 0.39
48 26 0.35
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATACGAGA
Found at i:92133149 original size:94 final size:93
Alignment explanation
Indices: 92132963--92133172 Score: 273
Period size: 94 Copynumber: 2.2 Consensus size: 93
92132953 ATTTGTGTGC
*
92132963 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTCTA
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTA-GAGAGCCAGTATAAGACCATGTCTA
*
92133028 GGACATGGCATCGGCATTGATACGAGAG-
65 GGACATGGCATCGGCATGGATACGAGAGT
* * * *
92133056 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACA-T-GATGTGTCAGTATAAGACCATGTTT
1 C-AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGA-GAGCCAGTATAAGACCATGTCT
* *
92133119 GGGACATGGCATCGGCATGGATATGTGAGAGT
64 AGGACATGGCATCGGCATGGATA--CGAGAGT
92133151 CAGTGTAAGACCATGTCTGGGA
1 CAGTGTAAGA-CATGTCTGGGA
92133173 TATGATGTCG
Statistics
Matches: 103, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
91 2 0.02
92 39 0.38
93 2 0.02
94 48 0.47
95 12 0.12
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGAGAGCCAGTATAAGACCATGTCTAG
GACATGGCATCGGCATGGATACGAGAGT
Found at i:92134801 original size:25 final size:25
Alignment explanation
Indices: 92134768--92134914 Score: 140
Period size: 25 Copynumber: 5.9 Consensus size: 25
92134758 GAGCATCTCA
* * *
92134768 ATAAATGGCTTTCTTGAGCTTCCCG
1 ATAATTGGCTCTCATGAGCTTCCCG
* ** *
92134793 TTGTTTGGCTCTGATGAGCTTCCCG
1 ATAATTGGCTCTCATGAGCTTCCCG
92134818 ATAATTGGCTCTCATGAGCTTCCCG
1 ATAATTGGCTCTCATGAGCTTCCCG
92134843 ATTAA-TGGCTCTCCA-GAGCTTCCCG
1 A-TAATTGGCTCT-CATGAGCTTCCCG
*
92134868 AT-ATTGGCTCGCATGAGCTTCCCG
1 ATAATTGGCTCTCATGAGCTTCCCG
* * *
92134892 TTACA-TGACTCACATGAGCTTCC
1 ATA-ATTGGCTCTCATGAGCTTCC
92134915 TGTTTCATGG
Statistics
Matches: 101, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
23 3 0.03
24 18 0.18
25 74 0.73
26 6 0.06
ACGTcount: A:0.18, C:0.28, G:0.21, T:0.33
Consensus pattern (25 bp):
ATAATTGGCTCTCATGAGCTTCCCG
Found at i:92134827 original size:50 final size:48
Alignment explanation
Indices: 92134733--92134893 Score: 146
Period size: 50 Copynumber: 3.2 Consensus size: 48
92134723 CAGCACGCAA
* * * * * * * *
92134733 GAGCATCCCGTTATTTAGCTCTATTGAGCATCTCAATAAATGGCTTTCTT
1 GAGCTTCCCGTT-TTTGGCTCTA-TGAGCTTCCCGATAATTGGCTCTCAT
92134783 GAGCTTCCCGTTGTTTGGCTCTGATGAGCTTCCCGATAATTGGCTCTCAT
1 GAGCTTCCCGTT-TTTGGCTCT-ATGAGCTTCCCGATAATTGGCTCTCAT
** *
92134833 GAGCTTCCCGATTAATGGCTCTCCA-GAGCTTCCCGAT-ATTGGCTCGCAT
1 GAGCTTCCCG-TTTTTGGCTCT--ATGAGCTTCCCGATAATTGGCTCTCAT
92134882 GAGCTTCCCGTT
1 GAGCTTCCCGTT
92134894 ACATGACTCA
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.02
49 21 0.22
50 68 0.72
51 4 0.04
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (48 bp):
GAGCTTCCCGTTTTTGGCTCTATGAGCTTCCCGATAATTGGCTCTCAT
Found at i:92134911 original size:49 final size:51
Alignment explanation
Indices: 92134806--92134914 Score: 154
Period size: 49 Copynumber: 2.2 Consensus size: 51
92134796 TTTGGCTCTG
* * *
92134806 ATGAGCTTCCCGATAATTGGCTCTCATGAGCTTCCCGATTAATGGCTCTCC
1 ATGAGCTTCCCGATAATTGGCTCGCATGAGCTTCCCGATTAATGACTCTAC
92134857 A-GAGCTTCCCGAT-ATTGGCTCGCATGAGCTTCCCG-TTACATGACTC-AC
1 ATGAGCTTCCCGATAATTGGCTCGCATGAGCTTCCCGATTA-ATGACTCTAC
92134905 ATGAGCTTCC
1 ATGAGCTTCC
92134915 TGTTTCATGG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 5 0.09
49 35 0.66
50 12 0.23
51 1 0.02
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.29
Consensus pattern (51 bp):
ATGAGCTTCCCGATAATTGGCTCGCATGAGCTTCCCGATTAATGACTCTAC
Found at i:92134923 original size:25 final size:25
Alignment explanation
Indices: 92134806--92134928 Score: 83
Period size: 25 Copynumber: 5.0 Consensus size: 25
92134796 TTTGGCTCTG
* * *
92134806 ATGAGCTTCCCGATA-ATTGGCTCTC
1 ATGAGCTTCCCGTTACA-TGACTCAC
* *
92134831 ATGAGCTTCCCGATTA-ATGGCTCTCC
1 ATGAGCTTCCCG-TTACATGACTC-AC
* * * *
92134857 A-GAGCTTCCCGATA-TTGGCTCGC
1 ATGAGCTTCCCGTTACATGACTCAC
92134880 ATGAGCTTCCCGTTACATGACTCAC
1 ATGAGCTTCCCGTTACATGACTCAC
* * *
92134905 ATGAGCTTCCTGTTTCATGGCTCA
1 ATGAGCTTCCCGTTACATGACTCA
92134929 AAAAAGCTTC
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
23 2 0.02
24 20 0.24
25 55 0.67
26 5 0.06
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACATGACTCAC
Found at i:92134937 original size:74 final size:74
Alignment explanation
Indices: 92134797--92134938 Score: 162
Period size: 74 Copynumber: 1.9 Consensus size: 74
92134787 TTCCCGTTGT
* * *** *
92134797 TTGGCTCTGATGAGCTTCCCGATAATTGGCTCTCATGAGCTTCCCGATTAATGGCTCTCCAGAGC
1 TTGGCTCTGATGAGCTTCCCGATAATTGACTCACATGAGCTTCCCGATTAATGGCTCAAAAAAGC
92134862 TTCCCGATA
66 TTCCCGATA
* * * *
92134871 TTGGCTC-GCATGAGCTTCCCGTTACA-TGACTCACATGAGCTTCCTGTTTCATGGCTCAAAAAA
1 TTGGCTCTG-ATGAGCTTCCCGATA-ATTGACTCACATGAGCTTCCCGATTAATGGCTCAAAAAA
92134934 GCTTC
64 GCTTC
92134939 ATGATTTATG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
73 1 0.02
74 54 0.96
75 1 0.02
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31
Consensus pattern (74 bp):
TTGGCTCTGATGAGCTTCCCGATAATTGACTCACATGAGCTTCCCGATTAATGGCTCAAAAAAGC
TTCCCGATA
Found at i:92136983 original size:40 final size:40
Alignment explanation
Indices: 92136939--92137026 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
92136929 ATTGAGTTGT
92136939 TGGACTTTATTAAACTCATCTTAGTTAATTATTGATTTCC
1 TGGACTTTATTAAACTCATCTTAGTTAATTATTGATTTCC
** *
92136979 TGGACTTTATTTTACTCATCTTAGTTAATTATTGATTTGC
1 TGGACTTTATTAAACTCATCTTAGTTAATTATTGATTTCC
*
92137019 TAGACTTT
1 TGGACTTT
92137027 GTTTTTATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.50
Consensus pattern (40 bp):
TGGACTTTATTAAACTCATCTTAGTTAATTATTGATTTCC
Found at i:92137336 original size:24 final size:22
Alignment explanation
Indices: 92137309--92137370 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
92137299 TGTTACATTT
92137309 CTTAAAGAAGAGCATTACTCATCA
1 CTTAAAGAAGAGCATTA--CATCA
*
92137333 CTT-AA-AAGAGCTGTTACATCA
1 CTTAAAGAAGAGC-ATTACATCA
* *
92137354 TTTAAAGGAGAGCATTA
1 CTTAAAGAAGAGCATTA
92137371 TATATCCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
21 7 0.23
22 11 0.35
23 10 0.32
24 3 0.10
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (22 bp):
CTTAAAGAAGAGCATTACATCA
Found at i:92145057 original size:43 final size:43
Alignment explanation
Indices: 92145010--92145092 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
92145000 GAAATTATAA
*
92145010 ATCCGAACTTGTTGAGTGGTCCGACTTCATTATGGATGTGAGC
1 ATCCGAACTCGTTGAGTGGTCCGACTTCATTATGGATGTGAGC
* * * **
92145053 ATCCGAGCTCGTTGAGTGGTCTGAGTTTGTTATGGATGTG
1 ATCCGAACTCGTTGAGTGGTCCGACTTCATTATGGATGTG
92145093 TTACATGTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.18, C:0.16, G:0.31, T:0.35
Consensus pattern (43 bp):
ATCCGAACTCGTTGAGTGGTCCGACTTCATTATGGATGTGAGC
Found at i:92149286 original size:25 final size:25
Alignment explanation
Indices: 92149258--92149400 Score: 98
Period size: 25 Copynumber: 5.8 Consensus size: 25
92149248 TCCCAATATA
* * *
92149258 TGGCTCTCTTGAGCTTCCTGTTATT
1 TGGCTCTCTTGAGCTTCCCGATAAT
*
92149283 TGGCTCT-TACGAGCTTCCCGATAAT
1 TGGCTCTCT-TGAGCTTCCCGATAAT
*
92149308 TGGCTCTCATGAGCTTCCCGATTAA-
1 TGGCTCTCTTGAGCTTCCCGA-TAAT
***
92149333 TGGCTCTAAAGAGCTTTCCCGAT-AT
1 TGGCTCTCTTGAGC-TTCCCGATAAT
* * * *
92149358 TGGCTCACATGAGCTTCCTGTTAA-
1 TGGCTCTCTTGAGCTTCCCGATAAT
*
92149382 CGGCTCT-TATGAGCTTCCC
1 TGGCTCTCT-TGAGCTTCCC
92149401 ATTACATGGC
Statistics
Matches: 94, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
24 22 0.23
25 62 0.66
26 10 0.11
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.35
Consensus pattern (25 bp):
TGGCTCTCTTGAGCTTCCCGATAAT
Found at i:92149321 original size:50 final size:48
Alignment explanation
Indices: 92149248--92149400 Score: 180
Period size: 50 Copynumber: 3.1 Consensus size: 48
92149238 CTTATGAGAA
* * * *
92149248 TCCCAATATATGGCTCTCTTGAGCTTCCTGTTATTTGGCTCTTACGAGCT
1 TCCCGATAT-TGGCTCTCATGAGCTTCCTGTTA-ATGGCTCTTAAGAGCT
* *
92149298 TCCCGATAATTGGCTCTCATGAGCTTCCCGATTAATGGCTCTAAAGAGCTT
1 TCCCGAT-ATTGGCTCTCATGAGCTTCCTG-TTAATGGCTCTTAAGAGC-T
* * *
92149349 TCCCGATATTGGCTCACATGAGCTTCCTGTTAACGGCTCTTATGAGCT
1 TCCCGATATTGGCTCTCATGAGCTTCCTGTTAATGGCTCTTAAGAGCT
92149397 TCCC
1 TCCC
92149401 ATTACATGGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
48 5 0.06
49 15 0.17
50 56 0.63
51 13 0.15
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (48 bp):
TCCCGATATTGGCTCTCATGAGCTTCCTGTTAATGGCTCTTAAGAGCT
Done.