Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 281 of 310
Found at i:92477293 original size:98 final size:98
Alignment explanation
Indices: 92477104--92477287 Score: 318
Period size: 98 Copynumber: 1.9 Consensus size: 98
92477094 GCACATCGCC
*
92477104 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATCTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATCTCACATT
92477169 AACCATTCAGCTTTACCACATATGCATATCTCA
66 AACCATTCAGCTTTACCACATATGCATATCTCA
*
92477202 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-T-TCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATCTCACATT
* *
92477265 AGCCATTCGGCTTTACCACATAT
66 AACCATTCAGCTTTACCACATAT
92477288 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 28 0.34
97 1 0.01
98 53 0.65
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATCTCACATT
AACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:92477332 original size:47 final size:47
Alignment explanation
Indices: 92477258--92477451 Score: 316
Period size: 47 Copynumber: 4.1 Consensus size: 47
92477248 CATACATATT
* * * *
92477258 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
92477305 CCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
92477352 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
92477399 TCACATTGGCCATTCCGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
92477446 TCACAT
1 TCACAT
92477452 AAAATCCTAA
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:92477345 original size:25 final size:25
Alignment explanation
Indices: 92477326--92477452 Score: 92
Period size: 25 Copynumber: 5.3 Consensus size: 25
92477316 ATTCAGCCTT
92477326 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
92477351 ATCACAT-T-GGCCA--TTCGGCCTT-
1 ATCACATATATG-CATGTTC-ACATTC
92477373 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * * *
92477398 ATCACAT-T-GGCCAT-TCCGCCTT-
1 ATCACATATATG-CATGTTCACATTC
*
92477420 ATCTCATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
92477445 ATCACATA
1 ATCACATA
92477453 AAATCCTAAA
Statistics
Matches: 74, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
22 16 0.22
23 17 0.23
24 17 0.23
25 24 0.32
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:92477483 original size:94 final size:91
Alignment explanation
Indices: 92477284--92477472 Score: 231
Period size: 94 Copynumber: 2.1 Consensus size: 91
92477274 GCTTTACCAC
*
92477284 ATATATGCATGTTCATATTCACCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACAT
1 ATATATGCATGTTCACATTCACCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACAT
** * * *
92477349 TCATCACATTGGCCATTCGGCCTTATCAC
66 TCATCACATT-GAAAAT--GCCTAATCAA
* * *
92477378 ATATATGCATGTTCACATTCATCACATTGGCCATTCCGCCTTATCTCATATATGCATGTTCACAT
1 ATATATGCATGTTCACATTCACCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACAT
92477443 TCATCACA-T-AAAAT-CCTAAATCAAA
66 TCATCACATTGAAAATGCCT-AATC-AA
92477468 ATATA
1 ATATA
92477473 AATTTTCATG
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
88 3 0.04
89 3 0.04
90 6 0.07
91 2 0.02
93 1 0.01
94 69 0.82
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.34
Consensus pattern (91 bp):
ATATATGCATGTTCACATTCACCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACAT
TCATCACATTGAAAATGCCTAATCAA
Found at i:92482147 original size:101 final size:101
Alignment explanation
Indices: 92482016--92482597 Score: 530
Period size: 101 Copynumber: 5.8 Consensus size: 101
92482006 TGATTTTAGG
* *
92482016 TCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
92482081 TAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
66 TAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
* * * * * *
92482117 TCACGTGTGTAGTACTAAGTGGAGGCTACTACTTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
* * * ** * * * *
92482182 TAAGAGCAGGCTAATACGTGTA-CTAGA-TAGTT-AGG
66 TAAGTGCAGGCTACTATGCATACCCA-ACAACTTCA-A
* * * * * * * * * * * *
92482217 TCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTAGGTCACATGTGTAGTA
* ** *** *** *
92482282 CAAAGTATAGGCTACTA--CATGTGTCAGA-TGGTT-AGG
65 CTAAGTGCAGGCTACTATGCAT-ACCCA-ACAACTTCA-A
* * * * *
92482318 TCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
92482383 TAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
66 TAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
* *
92482419 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
* ** *
92482484 TAAGTGCAGGCTACTATGCGTACCTGACAACTTCGA
66 TAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
* * ** * ** * *
92482520 TCACGTGTTTAGTACAAAGTATAGGCTACTACATGTGTCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
92482585 TAAGTGCAGGCTA
66 TAAGTGCAGGCTA
92482598 TTTCGTGTAC
Statistics
Matches: 382, Mismatches: 90, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
99 2 0.01
100 67 0.18
101 309 0.81
102 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
Found at i:92482202 original size:151 final size:151
Alignment explanation
Indices: 92482011--92482496 Score: 774
Period size: 151 Copynumber: 3.2 Consensus size: 151
92482001 TAAGATGATT
* * * * *
92482011 TTAGGTCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATAGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTAT
*
92482076 AGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAATCACGTGTGTAGTACTAAGTGGAG
66 AGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAATCACGTGTGTAGTACTAAGTGTAG
* *
92482141 GCTACTACTTGTATCAAATGG
131 GCTACTACATGTATCAGATGG
92482162 TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTAT
1 TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTAT
* ** * * * *
92482227 AGTACTAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTACAAAGTATAG
66 AGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAATCACGTGTGTAGTACTAAGTGTAG
*
92482292 GCTACTACATGTGTCAGATGG
131 GCTACTACATGTATCAGATGG
92482313 TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTAT
1 TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTAT
92482378 AGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAATCACGTGTGTAGTACTAAGTGTAG
66 AGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAATCACGTGTGTAGTACTAAGTGTAG
* * *
92482443 GCTACTACGTGTACCAGATAG
131 GCTACTACATGTATCAGATGG
* * *
92482464 TTAGGTCACATGTGTAGTAATAAGTGCAGGCTA
1 TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTA
92482497 CTATGCGTAC
Statistics
Matches: 305, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 305 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTAT
AGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAATCACGTGTGTAGTACTAAGTGTAG
GCTACTACATGTATCAGATGG
Found at i:92482464 original size:252 final size:251
Alignment explanation
Indices: 92482167--92482651 Score: 826
Period size: 252 Copynumber: 1.9 Consensus size: 251
92482157 AATGGTTAGG
* * *
92482167 TCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATAGTTAGGTCGCATGTATAGTAC
1 TCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACCAGATAGTTAGGTCACATGTATAGTAA
92482232 TAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTACAAAGTATAGGCTAC
66 TAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTACAAAGTATAGGCTAC
* *
92482297 TACATGTGTCAGATGGTTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACTAGATA
131 TACATGTGTCAGATGGTTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACCAAAT-
92482362 GTTAGGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
195 GTTAGGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
* * * *
92482419 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAA
1 TCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACCAGATAGTTAGGTCACATGTATAGTAA
92482484 TAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTACAAAGTATAGGCTAC
66 TAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTACAAAGTATAGGCTAC
* * * *
92482549 TACATGTGTCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTATTTCGTGTACCAAATT
131 TACATGTGTCAGATGGTTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACCAAATG
* *
92482614 TTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
196 TTAGGTCGCATGTATAGTACTAAGTGCAGGCTACTATG
92482652 AGTACCAGAT
Statistics
Matches: 218, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
251 36 0.17
252 182 0.83
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (251 bp):
TCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACCAGATAGTTAGGTCACATGTATAGTAA
TAAGTGCAGGCTACTATGCGTACCTGACAACTTCGATCACGTGTTTAGTACAAAGTATAGGCTAC
TACATGTGTCAGATGGTTAGGTCACGTGTGTAGTACTAAGAGCAGGCTAATACGTGTACCAAATG
TTAGGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCATACCCAACAACTTCAA
Found at i:92482882 original size:16 final size:15
Alignment explanation
Indices: 92482861--92482890 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
92482851 GAATGGAGTA
92482861 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
92482877 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
92482891 AAAAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:92487642 original size:2 final size:2
Alignment explanation
Indices: 92487635--92487662 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92487625 TATGATATGC
92487635 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92487663 TCTATGAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92489359 original size:224 final size:223
Alignment explanation
Indices: 92488969--92489414 Score: 849
Period size: 224 Copynumber: 2.0 Consensus size: 223
92488959 TATTTTGTTA
92488969 TTATATGAGATGTGGCTACCTATAGAATGATCATTTGATGTAAATTACGAATCGAAATAGACTAT
1 TTATATGAGATGTGGCTACCTATAGAATGATCATTTGATGTAAATTACGAATCGAAATAGACTAT
92489034 GAATGAGTTTGTTAAATGTTGAAAAGTGAGGAACTTCCCGGTTGAACCTTTGGAATAAAAATGAT
66 GAATGAGTTTGTTAAATGTTGAAAAGTGAGGAACTTCCCGGTTGAACCTTTGGAATAAAAATGAT
*
92489099 ACGAATGATCCATTGTGAGAACACATGTCTAGTACTATGTGCAGGATATTATGTGTTTA-AGATG
131 ACGAATGATCCATTGTGAGAACACATGTCTAGTACTATGTGCAGGATATTATGTGTTTACAGATA
92489163 GTTTTAGGTCACATGTGTAGTACTAAGTGT
196 G--TTAGGTCACATGTGTAGTACTAAGTGT
92489193 TTATATGAGATGTGGCTACCTATAGAATGATCATTTGATGTAAATTACGAATCGAAATAGACTAT
1 TTATATGAGATGTGGCTACCTATAGAATGATCATTTGATGTAAATTACGAATCGAAATAGACTAT
92489258 GAATGAGTTTGTTAAATGTTGAAAAGTGAGGAACTTCCCGGTTGAACCTTTGGAATAAAAATGAT
66 GAATGAGTTTGTTAAATGTTGAAAAGTGAGGAACTTCCCGGTTGAACCTTTGGAATAAAAATGAT
92489323 ACGAATGATCCATTGTGAGAACACATGTCTAGTACTATGTGCAGGATATTATGTGTTTACCAGAT
131 ACGAATGATCCATTGTGAGAACACATGTCTAGTACTATGTGCAGGATATTATGTGTTTA-CAGAT
92489388 AGTTAGGTCACATGTGTAGTACTAAGT
195 AGTTAGGTCACATGTGTAGTACTAAGT
92489415 CCAGGCTGCT
Statistics
Matches: 219, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
224 214 0.98
226 5 0.02
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (223 bp):
TTATATGAGATGTGGCTACCTATAGAATGATCATTTGATGTAAATTACGAATCGAAATAGACTAT
GAATGAGTTTGTTAAATGTTGAAAAGTGAGGAACTTCCCGGTTGAACCTTTGGAATAAAAATGAT
ACGAATGATCCATTGTGAGAACACATGTCTAGTACTATGTGCAGGATATTATGTGTTTACAGATA
GTTAGGTCACATGTGTAGTACTAAGTGT
Found at i:92489454 original size:50 final size:50
Alignment explanation
Indices: 92489380--92489538 Score: 167
Period size: 50 Copynumber: 3.2 Consensus size: 50
92489370 ATTATGTGTT
* *
92489380 TACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCAGGCTGCTACGTG
1 TACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCAAGCTACTACGTG
* * ** * *
92489430 TATCAGATGGTTAGGTCATGTGTGTAGTACTAAGTGCAAGCTATTACGTG
1 TACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCAAGCTACTACGTG
* * * ** * * *
92489480 TACCGGATTGTT-GGTCGCATGTGTAGTACTAAGTGTAGGCTACTAGGCG
1 TACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCAAGCTACTACGTG
92489529 TACCAGATAG
1 TACCAGATAG
92489539 CTTCTGTTAC
Statistics
Matches: 88, Mismatches: 21, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
49 37 0.42
50 51 0.58
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (50 bp):
TACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCAAGCTACTACGTG
Found at i:92489536 original size:99 final size:101
Alignment explanation
Indices: 92489352--92489536 Score: 230
Period size: 99 Copynumber: 1.8 Consensus size: 101
92489342 AACACATGTC
* * *
92489352 TAGTACTATGTGCAGGATATTATGTGTTTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCC
1 TAGTACTAAGTGCAAGATATTACGTG-TTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCC
* * *
92489417 AGGCTGCTACGTGTATCAGATGGTTAGGTCATGTGTG
65 AGGCTACTACGCGTACCAGATGGTTAGGTCATGTGTG
* * * * **
92489454 TAGTACTAAGTGCAAGCTATTACGTG-TACCGGATTGTT-GGTCGCATGTGTAGTACTAAGTGTA
1 TAGTACTAAGTGCAAGATATTACGTGTTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCA
*
92489517 GGCTACTAGGCGTACCAGAT
66 GGCTACTACGCGTACCAGAT
92489537 AGCTTCTGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
99 38 0.54
100 10 0.14
102 22 0.31
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (101 bp):
TAGTACTAAGTGCAAGATATTACGTGTTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTCCA
GGCTACTACGCGTACCAGATGGTTAGGTCATGTGTG
Found at i:92489757 original size:16 final size:15
Alignment explanation
Indices: 92489736--92489765 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
92489726 GAATGGAGTA
92489736 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
92489752 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
92489766 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:92493742 original size:3 final size:3
Alignment explanation
Indices: 92493734--92493760 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
92493724 GGATGTTGGC
92493734 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
92493761 TCGTATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:92495222 original size:8 final size:8
Alignment explanation
Indices: 92495205--92495240 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
92495195 CTAGATCAGC
92495205 AAAAGCCG
1 AAAAGCCG
*
92495213 AAAAGTCG
1 AAAAGCCG
92495221 AAAAGCCG
1 AAAAGCCG
*
92495229 AAATGCCG
1 AAAAGCCG
92495237 AAAA
1 AAAA
92495241 ACCGGCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.53, C:0.19, G:0.22, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:92495522 original size:27 final size:27
Alignment explanation
Indices: 92495492--92495553 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
92495482 ATTTACTAAA
*
92495492 ATACCCCTAAGTATG-AAAATTACTATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* * *
92495519 ATA-CCTTTAGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
92495545 ATACCCCTA
1 ATACCCCTA
92495554 GGGTTAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.07
26 19 0.70
27 6 0.22
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:92495697 original size:27 final size:27
Alignment explanation
Indices: 92495659--92495764 Score: 142
Period size: 27 Copynumber: 3.9 Consensus size: 27
92495649 GAGGAAGCGT
92495659 TCTGGTGGCTCTACCACAAATATCTG-A
1 TCTGGTGGCTCTACCAC-AATATCTGTA
* *
92495686 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTACCAC-AATATCTGTA
*
92495714 TCTAGTGGCTCTACCACAATATCTGTA
1 TCTGGTGGCTCTACCACAATATCTGTA
* *
92495741 TCTGGTGACTCTATCACAATATCT
1 TCTGGTGGCTCTACCACAATATCT
92495765 ATTCTGGCAG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 55 0.79
28 15 0.21
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTACCACAATATCTGTA
Found at i:92495759 original size:55 final size:54
Alignment explanation
Indices: 92495658--92495764 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 54
92495648 GGAGGAAGCG
* * *
92495658 TTCTGGTGGCTCTACCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTAGTGGCTCTACCACAAATATCTGATCTGGTGACTCTACCAC-AATATCTGT
*
92495713 TTCTAGTGGCTCTACCAC-AATATCTGTATCTGGTGACTCTATCACAATATCT
1 TTCTAGTGGCTCTACCACAAATATCTG-ATCTGGTGACTCTACCACAATATCT
92495765 ATTCTGGCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
54 15 0.32
55 32 0.68
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TTCTAGTGGCTCTACCACAAATATCTGATCTGGTGACTCTACCACAATATCTGT
Found at i:92508774 original size:20 final size:21
Alignment explanation
Indices: 92508737--92508776 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
92508727 TAAAATAGAT
92508737 TAAATAATAATTTGGAAAAAA
1 TAAATAATAATTTGGAAAAAA
* *
92508758 TAAA-AATATTTTTGAAAAA
1 TAAATAATAATTTGGAAAAA
92508777 TTAATTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
TAAATAATAATTTGGAAAAAA
Found at i:92513086 original size:29 final size:29
Alignment explanation
Indices: 92512973--92513083 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 29
92512963 ACATACATGC
*
92512973 ATATGGCCCACTTA-GCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCACATTT
* * * * *
92513001 ATATGGCCCATCAGGCCCTATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTT
* *
92513030 ATATGGCCCATTACGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
*
92513059 ATATGGCCCGTTAGGCCCAAATCAC
1 ATATGGCCCATTAGGCCCAAATCAC
92513084 CTTATATTCA
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
27 2 0.03
28 14 0.21
29 51 0.76
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:92515394 original size:47 final size:47
Alignment explanation
Indices: 92515286--92515416 Score: 137
Period size: 47 Copynumber: 2.8 Consensus size: 47
92515276 GACACATCTC
*
92515286 GTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
1 GTAGCCGATGCATGT-CCAGACATGTCTTACACTAGCTCTCGTATCAA
* *
92515334 -TA-CCGATGCCATGTCCAAGACATGGTCTTACACTGGCT-T-TTAT-AA
1 GTAGCCGATG-CATGTCC-AGACAT-GTCTTACACTAGCTCTCGTATCAA
*
92515379 TGTAGCCGATGCATGTACCAGACATATCTTACACTAGC
1 -GTAGCCGATGCATGT-CCAGACATGTCTTACACTAGC
92515417 CCACAATAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
45 2 0.03
46 21 0.30
47 27 0.38
48 21 0.30
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (47 bp):
GTAGCCGATGCATGTCCAGACATGTCTTACACTAGCTCTCGTATCAA
Found at i:92516331 original size:10 final size:9
Alignment explanation
Indices: 92516308--92516332 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
92516298 TCAAGGATCC
92516308 CAAAAACAT
1 CAAAAACAT
92516317 CAAAAACAT
1 CAAAAACAT
92516326 CAAAAAC
1 CAAAAAC
92516333 CAACACCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (9 bp):
CAAAAACAT
Found at i:92521797 original size:46 final size:46
Alignment explanation
Indices: 92521741--92521911 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
92521731 CACTGAAACA
92521741 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * * * *
92521787 GCCAATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * *
92521833 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
* *
92521881 GCCGATGCATGTCCCAAACATGTCTTGCACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
92521912 AGCCCACAAT
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 52 0.50
47 27 0.26
48 23 0.22
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:92521912 original size:94 final size:92
Alignment explanation
Indices: 92521741--92521914 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
92521731 CACTGAAACA
* * *
92521741 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCAATGCATGTCCTAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAAC
92521806 ATGTCTTACACTAGCTCTCGTCTCAAT
66 ATGTCTTACACTAGCTCTCGTCTCAAT
* * *
92521833 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCT-CATAAT-GTGGCCGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGTCCC
*
92521896 AAACATGTCTTGCACTAGC
62 AAACATGTCTTACACTAGC
92521915 CCACAATAGC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 14 0.20
94 48 0.68
95 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTCGTCTCAAT
Found at i:92522589 original size:20 final size:21
Alignment explanation
Indices: 92522564--92522603 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
92522554 ACAATTTCAA
92522564 TTATTTCAC-ACATTCACAAC
1 TTATTTCACAACATTCACAAC
* *
92522584 TTATTTTACAACTTTCACAA
1 TTATTTCACAACATTCACAA
92522604 AATGGTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.25, G:0.00, T:0.40
Consensus pattern (21 bp):
TTATTTCACAACATTCACAAC
Found at i:92522808 original size:10 final size:9
Alignment explanation
Indices: 92522784--92522809 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
92522774 TTCAAGGATC
92522784 TCAAAAACA
1 TCAAAAACA
92522793 TCAAAAACA
1 TCAAAAACA
92522802 TCAAAAAC
1 TCAAAAAC
92522810 CAACACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:92525872 original size:30 final size:30
Alignment explanation
Indices: 92525814--92525872 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
92525804 ATTTTCGAGC
**
92525814 CTAGAGGCAAAATGGTCATTTTGTCAAAGT
1 CTAGAGGCAAAATGGTCATTTTACCAAAGT
* *
92525844 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGAGGCAAAATGGTCATTTTACCAAAG
92525873 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGAGGCAAAATGGTCATTTTACCAAAGT
Found at i:92526316 original size:46 final size:45
Alignment explanation
Indices: 92526217--92526479 Score: 221
Period size: 46 Copynumber: 5.7 Consensus size: 45
92526207 TTGTGTGAGG
* * * *
92526217 TAGTGTAGGACATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGC
1 TAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATGTA--GC
* * *
92526264 TGGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGATGTAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AGC
* *
92526310 CAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT-GT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGC
* * * *
92526354 TAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA--GC
* * ** *
92526402 TGGTGTAAGACATGTTTGGGACATGCATCGGCGACGAGATGT-GT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGC
*
92526446 TAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
92526480 ACAGATATGC
Statistics
Matches: 175, Mismatches: 29, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
44 18 0.10
45 29 0.17
46 83 0.47
47 35 0.20
48 10 0.06
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGC
Found at i:92526409 original size:92 final size:92
Alignment explanation
Indices: 92526312--92526480 Score: 320
Period size: 92 Copynumber: 1.8 Consensus size: 92
92526302 ATGTAAGCCA
*
92526312 GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAGTATAAGACCATGTCTGGGAC
1 GTGTAAGACATGTCTGGGACATGCATCGGCGACGAGATGTGTTAGTATAAGACCATGTCTGGGAC
92526377 ATGGCATCGGCATTGAGACGAGTGCTG
66 ATGGCATCGGCATTGAGACGAGTGCTG
*
92526404 GTGTAAGACATGTTTGGGACATGCATCGGCGACGAGATGTGTTAGTATAAGACCATGTCTGGGAC
1 GTGTAAGACATGTCTGGGACATGCATCGGCGACGAGATGTGTTAGTATAAGACCATGTCTGGGAC
92526469 ATGGCATCGGCA
66 ATGGCATCGGCA
92526481 CAGATATGCT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (92 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCGACGAGATGTGTTAGTATAAGACCATGTCTGGGAC
ATGGCATCGGCATTGAGACGAGTGCTG
Found at i:92526476 original size:138 final size:137
Alignment explanation
Indices: 92526227--92526479 Score: 418
Period size: 138 Copynumber: 1.8 Consensus size: 137
92526217 TAGTGTAGGA
92526227 CATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTGGTGTAAGACATGTTTGGGACATGCAT
1 CATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTGGTGTAAGACATGTTTGGGACATGCAT
* *
92526292 CGGCCTCAAGATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAG
66 CGGCCACAAGATGT-AGCCAGTATAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAG
92526357 TATAAGAC
130 TATAAGAC
92526365 CATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTGGTGTAAGACATGTTTGGGACATGCAT
1 CATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTGGTGTAAGACATGTTTGGGACATGCAT
* * **
92526430 CGGCGACGAGATGT-GTTAGTATAAGACCATGTCTGGGACATGGCATCGGC
66 CGGCCACAAGATGTAGCCAGTATAAGA-CATGTCTGGGACAT-GCATCGGC
92526480 ACAGATATGC
Statistics
Matches: 107, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
136 9 0.08
137 14 0.13
138 84 0.79
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (137 bp):
CATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTGGTGTAAGACATGTTTGGGACATGCAT
CGGCCACAAGATGTAGCCAGTATAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAGT
ATAAGAC
Found at i:92529029 original size:47 final size:46
Alignment explanation
Indices: 92528906--92529031 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 46
92528896 TGTAACCCGC
* * *
92528906 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCCTTTACAT
* *
92528952 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GCCT--TTACAT
*
92529002 -C-TCA-CGAACTCGGACTCAACTCAACGAGCT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCT
92529032 TAGAACTCAA
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
46 35 0.50
47 24 0.34
48 5 0.07
49 1 0.01
50 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCCTTTACAT
Found at i:92532934 original size:16 final size:15
Alignment explanation
Indices: 92532908--92532944 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
92532898 TATGAATCGG
*
92532908 CAAAAGCCGAAATGC
1 CAAAAGCCGAAAAGC
92532923 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
92532939 CAAAAG
1 CAAAAG
92532945 TTTGGCTACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.51, C:0.24, G:0.19, T:0.05
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:92533202 original size:29 final size:28
Alignment explanation
Indices: 92533169--92533253 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
92533159 AATGTGACTG
*
92533169 GGCCTAACGAGCCATATAAATCTGATTTA
1 GGCCTAA-GAGCCATATAAATATGATTTA
* * ** *
92533198 GGCCTAATAGGCCATATACAGGTGATTTG
1 GGCCTAAGA-GCCATATAAATATGATTTA
* *
92533227 GGCCTAATGGGCCATATGAATATGATT
1 GGCCTAA-GAGCCATATAAATATGATT
92533254 GGGCTTAATG
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (28 bp):
GGCCTAAGAGCCATATAAATATGATTTA
Found at i:92536239 original size:14 final size:14
Alignment explanation
Indices: 92536220--92536247 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92536210 CGCCCCAAAA
92536220 ACTGTATCATCTAC
1 ACTGTATCATCTAC
92536234 ACTGTATCATCTAC
1 ACTGTATCATCTAC
92536248 TCTAACATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (14 bp):
ACTGTATCATCTAC
Found at i:92546315 original size:281 final size:281
Alignment explanation
Indices: 92545806--92546365 Score: 1012
Period size: 281 Copynumber: 2.0 Consensus size: 281
92545796 TAGGTTTGAT
* * *
92545806 CGAAGGCTTGGATCTTTGGAACAACTAGACTTAGATCTAGTCATCGGTTTTCGGTAAAAAGGACA
1 CGAAGCCTTGGATCTTTGGAACAACTAAACTTAGATCTAGTCATCGGTTTTCGGCAAAAAGGACA
* *
92545871 TCGTAAGGAATCTCAGCAGCAGTCGTCGTGAAACAGGTGTGTATCGAACACCCTCTCATAGTTTA
66 TCGTAAGGAATCTCAGCAGCAGTCATCGTGAAACAGGTGTGTATCGAACACCCTCTCATAGTTCA
*
92545936 ATTCGGCAAAAGCCGAAATACCAAAATTTTGGCATTTCGTGGGCTTGTGAGTGTGCGAGTGCTCA
131 ATTCAGCAAAAGCCGAAATACCAAAATTTTGGCATTTCGTGGGCTTGTGAGTGTGCGAGTGCTCA
92546001 CAAGATGTTTAGAAATCATTAGATCTGAAATCACAAAGTGGTAAGTTAGGCGTGTATGAAATTTC
196 CAAGATGTTTAGAAATCATTAGATCTGAAATCACAAAGTGGTAAGTTAGGCGTGTATGAAATTTC
92546066 GTGCACTTCGGTAATTGGGAG
261 GTGCACTTCGGTAATTGGGAG
92546087 CGAAGCCTTGGATCTTTGGAACAACTAAACTTAGATCTAGTCATCGGTTTTCGGCAAAAAGGACA
1 CGAAGCCTTGGATCTTTGGAACAACTAAACTTAGATCTAGTCATCGGTTTTCGGCAAAAAGGACA
* * *
92546152 TCGTAAGGGATCTCAGTAGCAGTTATCGTGAAACAGGTGTGTATCGAACACCCTCTCATAGTTCA
66 TCGTAAGGAATCTCAGCAGCAGTCATCGTGAAACAGGTGTGTATCGAACACCCTCTCATAGTTCA
*
92546217 ATTCAGCAAAAGCCGAAATGCCAAAATTTTGGCATTTCGTGGGCTTGTGAGTGTGCGAGTGCTCA
131 ATTCAGCAAAAGCCGAAATACCAAAATTTTGGCATTTCGTGGGCTTGTGAGTGTGCGAGTGCTCA
* *
92546282 CAAGATGTTTAGAAATCATTAGATCTGAAATCACAAAGTGGTAAGTTAGTCGTGTATGAAATTTT
196 CAAGATGTTTAGAAATCATTAGATCTGAAATCACAAAGTGGTAAGTTAGGCGTGTATGAAATTTC
92546347 GTGCACTTCGGTAATTGGG
261 GTGCACTTCGGTAATTGGG
92546366 CCTCGATAGG
Statistics
Matches: 267, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
281 267 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (281 bp):
CGAAGCCTTGGATCTTTGGAACAACTAAACTTAGATCTAGTCATCGGTTTTCGGCAAAAAGGACA
TCGTAAGGAATCTCAGCAGCAGTCATCGTGAAACAGGTGTGTATCGAACACCCTCTCATAGTTCA
ATTCAGCAAAAGCCGAAATACCAAAATTTTGGCATTTCGTGGGCTTGTGAGTGTGCGAGTGCTCA
CAAGATGTTTAGAAATCATTAGATCTGAAATCACAAAGTGGTAAGTTAGGCGTGTATGAAATTTC
GTGCACTTCGGTAATTGGGAG
Found at i:92562111 original size:35 final size:35
Alignment explanation
Indices: 92562040--92562122 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 35
92562030 CAAGGTTCAT
92562040 TATATCATCACATATCGCCAAACATACAAGTACAA
1 TATATCATCACATATCGCCAAACATACAAGTACAA
* *
92562075 TATATCATCATATAT-GACCAAATATACAAGCT-CAA
1 TATATCATCACATATCG-CCAAACATACAAG-TACAA
* *
92562110 TAAAACATCACAT
1 TATATCATCACAT
92562123 GTAGTCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
34 1 0.02
35 39 0.95
36 1 0.02
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (35 bp):
TATATCATCACATATCGCCAAACATACAAGTACAA
Found at i:92562132 original size:35 final size:35
Alignment explanation
Indices: 92562093--92562159 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
92562083 CATATATGAC
92562093 CAAATATACAAGCTCAATAAAACATCACATGTAGT
1 CAAATATACAAGCTCAATAAAACATCACATGTAGT
* * * *
92562128 CAAATATTCAAGTTTAATATAACATCACATGT
1 CAAATATACAAGCTCAATAAAACATCACATGT
92562160 GACAGCCCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.28
Consensus pattern (35 bp):
CAAATATACAAGCTCAATAAAACATCACATGTAGT
Found at i:92562539 original size:56 final size:56
Alignment explanation
Indices: 92562453--92562572 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
92562443 ACAAGGGATG
92562453 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
92562509 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
92562565 ATGGGCAA
1 ATGGGCAA
92562573 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:92562678 original size:50 final size:51
Alignment explanation
Indices: 92562620--92562720 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 51
92562610 AAAAAATGTG
92562620 TTCATCATTCTCATGCATGACCAAAAAAAA-AAGAAGAGAAAAGCTCTCAT
1 TTCATCATTCTCATGCATGACCAAAAAAAAGAAGAAGAGAAAAGCTCTCAT
92562670 TTCATCATTCTCATGCATGACCAAAAAAAAGAAGAAGAGAAAAGCTCTCAT
1 TTCATCATTCTCATGCATGACCAAAAAAAAGAAGAAGAGAAAAGCTCTCAT
92562721 GTTGTTCTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 30 0.60
51 20 0.40
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.22
Consensus pattern (51 bp):
TTCATCATTCTCATGCATGACCAAAAAAAAGAAGAAGAGAAAAGCTCTCAT
Found at i:92564967 original size:40 final size:40
Alignment explanation
Indices: 92564091--92564957 Score: 1612
Period size: 40 Copynumber: 21.7 Consensus size: 40
92564081 ATTTGAATGA
92564091 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564131 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564171 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564211 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564251 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564291 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564331 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564371 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564411 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564451 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564491 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564531 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564571 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564611 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564651 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564691 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564731 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564771 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
92564811 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
92564851 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
* * ** *
92564891 TATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
*
92564931 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
92564958 GTGCGAGTTG
Statistics
Matches: 821, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
40 818 1.00
41 3 0.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:92565995 original size:150 final size:150
Alignment explanation
Indices: 92565819--92566118 Score: 573
Period size: 150 Copynumber: 2.0 Consensus size: 150
92565809 TAAAGTTTAC
*
92565819 CTTGAAAATAGATGCTGACAGCAGCAGTGGTATGGATTTGAAAAATCACTAAAATTTGTAGGAAT
1 CTTGAAAACAGATGCTGACAGCAGCAGTGGTATGGATTTGAAAAATCACTAAAATTTGTAGGAAT
92565884 GGAATTAAATAGTGAATAAATTATGTAATCGAACCTTGATGAATATATTTTCATATGAAAGTAAC
66 GGAATTAAATAGTGAATAAATTATGTAATCGAACCTTGATGAATATATTTTCATATGAAAGTAAC
*
92565949 GAAACAATCATATGAGCAGT
131 GAAACAATCATATGAACAGT
92565969 CTTGAAAACAGATGCTGACAGCAGCAGTGGTATGGATTTGAAAAATCACTAAAATTTGTAGGAAT
1 CTTGAAAACAGATGCTGACAGCAGCAGTGGTATGGATTTGAAAAATCACTAAAATTTGTAGGAAT
*
92566034 GGAATTAAATAGTGAATAAATTATGTAATCGAACCTTGATGAATCTATTTTCATATGAAAGTAAC
66 GGAATTAAATAGTGAATAAATTATGTAATCGAACCTTGATGAATATATTTTCATATGAAAGTAAC
92566099 GAAACAATCATATGAACAGT
131 GAAACAATCATATGAACAGT
92566119 ATATTAAGAG
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (150 bp):
CTTGAAAACAGATGCTGACAGCAGCAGTGGTATGGATTTGAAAAATCACTAAAATTTGTAGGAAT
GGAATTAAATAGTGAATAAATTATGTAATCGAACCTTGATGAATATATTTTCATATGAAAGTAAC
GAAACAATCATATGAACAGT
Found at i:92569055 original size:16 final size:17
Alignment explanation
Indices: 92569036--92569067 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
92569026 TTTAATTTTA
92569036 TTCAATTATTT-AATTC
1 TTCAATTATTTGAATTC
92569052 TTCAATTATTTGAATT
1 TTCAATTATTTGAATT
92569068 ATTAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.56
Consensus pattern (17 bp):
TTCAATTATTTGAATTC
Found at i:92582291 original size:15 final size:16
Alignment explanation
Indices: 92582270--92582312 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
92582260 TTCTATAGTC
92582270 TTCTATAGTTTCACAA
1 TTCTATAGTTTCACAA
*
92582286 -TCTATAGTTTTTACAA
1 TTCTATAG-TTTCACAA
92582302 TTCTATAGTTT
1 TTCTATAGTTT
92582313 TCAAAGTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 7 0.29
16 10 0.42
17 7 0.29
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.51
Consensus pattern (16 bp):
TTCTATAGTTTCACAA
Found at i:92582308 original size:17 final size:17
Alignment explanation
Indices: 92582270--92582315 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
92582260 TTCTATAGTC
92582270 TTCTATAG-TTTCACAA
1 TTCTATAGTTTTCACAA
*
92582286 -TCTATAGTTTTTACAA
1 TTCTATAGTTTTCACAA
92582302 TTCTATAGTTTTCA
1 TTCTATAGTTTTCA
92582316 AAGTCTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 7 0.27
16 7 0.27
17 12 0.46
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (17 bp):
TTCTATAGTTTTCACAA
Found at i:92585809 original size:16 final size:16
Alignment explanation
Indices: 92585784--92585815 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92585774 ATGTGATCCA
92585784 AAAATCATATTTTTGC
1 AAAATCATATTTTTGC
*
92585800 AAAATTATATTTTTGC
1 AAAATCATATTTTTGC
92585816 CCCTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (16 bp):
AAAATCATATTTTTGC
Found at i:92587269 original size:20 final size:19
Alignment explanation
Indices: 92587224--92587269 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
92587214 ATACTCACAA
92587224 ATTA-ATTAAATAAATAAC
1 ATTATATTAAATAAATAAC
* *
92587242 ATTTTATTAAAGTAAATAAT
1 ATTATATTAAA-TAAATAAC
92587262 ATTATATT
1 ATTATATT
92587270 TCAATTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 3 0.13
19 6 0.26
20 14 0.61
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTATATTAAATAAATAAC
Found at i:92592873 original size:21 final size:21
Alignment explanation
Indices: 92592832--92592873 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
92592822 GACCCATGCA
*
92592832 TGTTTGTAATTTACTTGGTAG
1 TGTTTGTAATTTACTTCGTAG
*
92592853 TGTTTGTAATTTAGTTCGTAG
1 TGTTTGTAATTTACTTCGTAG
92592874 CCATGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.24, T:0.52
Consensus pattern (21 bp):
TGTTTGTAATTTACTTCGTAG
Found at i:92592951 original size:138 final size:138
Alignment explanation
Indices: 92592703--92592971 Score: 493
Period size: 138 Copynumber: 1.9 Consensus size: 138
92592693 CACTGCTTCT
*
92592703 TTTACTTAGTAGTGTTTGTGATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
92592768 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
92592833 GTTTGTAA
131 GTTTGTAA
* * *
92592841 TTTACTTGGTAGTGTTTGTAATTTAGTTCGTAGCCATGATTTTCTTGGATGACTAGTTTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
*
92592906 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGGTAATTGGTTTGAGGGAGGACCCATGCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
92592971 G
131 G
92592972 ATTATAATGA
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 126 1.00
ACGTcount: A:0.22, C:0.12, G:0.22, T:0.43
Consensus pattern (138 bp):
TTTACTTAGTAGTGTTTGTAATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
GTTTGTAA
Found at i:92595740 original size:31 final size:31
Alignment explanation
Indices: 92595702--92595765 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
92595692 CTCGTCACAC
92595702 GTTATGTTCATTTACAACCGTACATTTAGGA
1 GTTATGTTCATTTACAACCGTACATTTAGGA
92595733 GTTATGTTCATTTACAACCGTACATTTAGGA
1 GTTATGTTCATTTACAACCGTACATTTAGGA
92595764 GT
1 GT
92595766 GAGCAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (31 bp):
GTTATGTTCATTTACAACCGTACATTTAGGA
Found at i:92605712 original size:18 final size:18
Alignment explanation
Indices: 92605678--92606027 Score: 194
Period size: 18 Copynumber: 19.1 Consensus size: 18
92605668 TCATTAACAA
* *
92605678 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* *
92605695 TCAGTAACAGTCACTTAT
1 TCAGTAACAATCAATTAT
*
92605713 TCGGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* *
92605731 TCAATAATAA-CAAATTAT
1 TCAGTAACAATC-AATTAT
*
92605749 TCAGTATCAATCAATTGATCGGTT
1 TCAGTAACAATCAATT-A-----T
92605773 ATCCAGTAACAATCAATTAT
1 -T-CAGTAACAATCAATTAT
*
92605793 TTAGTAA-AATC-ATATAT
1 TCAGTAACAATCAAT-TAT
* * *
92605810 TCAATAGCAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* *
92605829 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
*
92605847 TTAGTAA-AATC-ATATAT
1 TCAGTAACAATCAAT-TAT
* * *
92605864 TCAATAGCAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* * *
92605883 TCAGTAACAGTTATTTAT
1 TCAGTAACAATCAATTAT
* *
92605901 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
92605919 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
92605937 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTAT
* *
92605955 TCAGTAACAGTCTATTA-
1 TCAGTAACAATCAATTAT
92605972 TCTAGTAACAGA-CAATTAT
1 TC-AGTAACA-ATCAATTAT
* * *
92605991 TCGGTAATAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
92606009 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
92606027 T
1 T
92606028 TTATACCTTT
Statistics
Matches: 253, Mismatches: 57, Indels: 45
0.71 0.16 0.13
Matches are distributed among these distances:
16 4 0.02
17 28 0.11
18 169 0.67
19 32 0.13
20 3 0.01
24 1 0.00
25 2 0.01
26 14 0.06
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:92605901 original size:54 final size:54
Alignment explanation
Indices: 92605770--92605893 Score: 230
Period size: 54 Copynumber: 2.3 Consensus size: 54
92605760 CAATTGATCG
*
92605770 GTTATCCAGTAACAATCAATTATTTAGTAAAATCATATATTCAATAGCAATTAA
1 GTTATCCAGTAACAGTCAATTATTTAGTAAAATCATATATTCAATAGCAATTAA
92605824 GTTATCCAGTAACAGTCAATTATTTAGTAAAATCATATATTCAATAGCAATTAA
1 GTTATCCAGTAACAGTCAATTATTTAGTAAAATCATATATTCAATAGCAATTAA
*
92605878 GTTATTCAGTAACAGT
1 GTTATCCAGTAACAGT
92605894 TATTTATTCA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (54 bp):
GTTATCCAGTAACAGTCAATTATTTAGTAAAATCATATATTCAATAGCAATTAA
Found at i:92606283 original size:45 final size:45
Alignment explanation
Indices: 92606196--92606305 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
92606186 TCTGGAACAG
* * *
92606196 TAACAGTAATAGTAACAGTATTCAACACATAAAGCGCTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGCGCCGAATCGA
* * * *
92606241 TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGCGCCGAATCGA
*
92606286 TAACAGTAACGGTAACAGTA
1 TAACAGTAACAGTAACAGTA
92606306 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGCGCCGAATCGA
Found at i:92606296 original size:51 final size:48
Alignment explanation
Indices: 92606190--92606328 Score: 142
Period size: 45 Copynumber: 2.9 Consensus size: 48
92606180 AACAAATCTG
* * * * *
92606190 GAACAGTAACAGTAATAGTAACAGTATTCAACACATAAAGCGCTGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACA-AAAGTGCCGAATC
92606239 G---A-TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACA-AAAGTGCCGAATC
* * *
92606284 GGTAACAGTAACGGTAACAGTAACAGTAGTCGGCACATAAGTGCC
1 -G-AACAGTAACGGTAACAGTAACAGTATTCGACACAAAAGTGCC
92606329 TGATCAGTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
45 37 0.49
46 2 0.03
49 1 0.01
50 8 0.11
51 27 0.36
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (48 bp):
GAACAGTAACGGTAACAGTAACAGTATTCGACACAAAAGTGCCGAATC
Found at i:92606300 original size:12 final size:12
Alignment explanation
Indices: 92606283--92606307 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92606273 AGTGCCGAAT
92606283 CGGTAACAGTAA
1 CGGTAACAGTAA
92606295 CGGTAACAGTAA
1 CGGTAACAGTAA
92606307 C
1 C
92606308 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:92608060 original size:5 final size:5
Alignment explanation
Indices: 92608050--92608092 Score: 77
Period size: 5 Copynumber: 8.4 Consensus size: 5
92608040 TTACTTATTT
92608050 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA AT
92608093 TTCTTATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 32 0.86
6 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:92608219 original size:21 final size:22
Alignment explanation
Indices: 92608180--92608232 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
92608170 CATACAATTG
*
92608180 TTAAAATAATATTATAATATCA
1 TTAAAATAATATTACAATATCA
*
92608202 TTAATATAA-ATTACAATAT-A
1 TTAAAATAATATTACAATATCA
*
92608222 ATAAAATAATA
1 TTAAAATAATA
92608233 ATATAGTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 10 0.38
22 8 0.31
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAATAATATTACAATATCA
Found at i:92612666 original size:18 final size:18
Alignment explanation
Indices: 92612634--92612929 Score: 121
Period size: 18 Copynumber: 16.1 Consensus size: 18
92612624 TCATTAACAA
*
92612634 TCAG-AACAATTATTTAT
1 TCAGTAACAATCATTTAT
*
92612651 TCAGTAACAGTCATTTAT
1 TCAGTAACAATCATTTAT
* *
92612669 TCGGTAACAATCAATTAT
1 TCAGTAACAATCATTTAT
* * * *
92612687 TCAATAATAACCAATTAT
1 TCAGTAACAATCATTTAT
* *
92612705 TTAGTATCAATCAATTGATCGGTTAT
1 TCAG--T-AA-CAA-TCAT---TTAT
* * * *
92612731 CCAGTAATAGTCAATTAT
1 TCAGTAACAATCATTTAT
* **
92612749 TTAGTAA-AATCAGATAT
1 TCAGTAACAATCATTTAT
* ** * *
92612766 TCAATAGTAATTAAGTTAT
1 TCAGTAACAA-TCATTTAT
* *
92612785 TCAGTAACAGTCATCTAT
1 TCAGTAACAATCATTTAT
* *
92612803 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCATTTAT
** *
92612821 TCAGTAATGATCAATTAT
1 TCAGTAACAATCATTTAT
* * *
92612839 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCATTTAT
*
92612857 TCAGTAACAGTC-TATTAT
1 TCAGTAACAATCAT-TTAT
* * *
92612875 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCATTTAT
* *
92612893 TCAGTAACAGTCAATTAT
1 TCAGTAACAATCATTTAT
* *
92612911 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCATTTAT
92612929 T
1 T
92612930 TTATTCCTTT
Statistics
Matches: 208, Mismatches: 58, Indels: 25
0.71 0.20 0.09
Matches are distributed among these distances:
17 15 0.07
18 163 0.78
19 12 0.06
20 1 0.00
21 4 0.02
22 3 0.01
23 3 0.01
24 1 0.00
26 6 0.03
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
TCAGTAACAATCATTTAT
Found at i:92612687 original size:36 final size:36
Alignment explanation
Indices: 92612634--92612917 Score: 171
Period size: 36 Copynumber: 7.7 Consensus size: 36
92612624 TCATTAACAA
* * *
92612634 TCAG-AACAATTATTTATTCAGTAACAGTCATTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAATTAT
* * * **
92612669 TCGGTAACAATCAATTATTCAATAATAACCAATTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAATTAT
* * *
92612705 TTAGTATCAATCAATTGATCGGTTATCCAGTAATAGTCAATTAT
1 TCAGTAACAATCAATT-A-----T-T-CAGTAACAGTCAATTAT
* * ** * *
92612749 TTAGTAA-AATCAGA-TATTCAATAGTAATTAAGTTAT
1 TCAGTAACAATCA-ATTATTCAGTAACAGTCAA-TTAT
* * * *
92612785 TCAGTAACAGTC-ATCTATTCAGTGACAATCAGTTAT
1 TCAGTAACAATCAAT-TATTCAGTAACAGTCAATTAT
** * * *
92612821 TCAGTAATGATCAATTATTCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAATTAT
* * *
92612857 TCAGTAACAGTCTATTATCCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAATTAT
*
92612893 TCAGTAACAGTCAATTATTCAGTAA
1 TCAGTAACAATCAATTATTCAGTAA
92612918 TAATCAGTTA
Statistics
Matches: 191, Mismatches: 43, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
35 13 0.07
36 130 0.68
37 18 0.09
42 2 0.01
43 7 0.04
44 21 0.11
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAACAGTCAATTAT
Found at i:92612784 original size:54 final size:54
Alignment explanation
Indices: 92612726--92612929 Score: 164
Period size: 54 Copynumber: 3.8 Consensus size: 54
92612716 CAATTGATCG
* * * *
92612726 GTTATCCAGTAATAGTCAATTATTTAGTAAAATCAGATATTCAATAGTAATTAA
1 GTTATTCAGTAATAGTCAATTATTCAGTAAAATCAGATATTCAATAATAATCAA
* * * * *
92612780 GTTATTCAGTAACAGTC-ATCTATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 GTTATTCAGTAATAGTCAAT-TATTCAGT-AAAATCAGATATTCAATAATAATCAA
* * * * * * * *
92612835 -TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTA-TTATCCAGTAACAGTCAA
1 GTTATTCAGTAATAGTCAATTATTCAGTAA-AATC-AGATATTCAATAATAATCAA
* *
92612889 -TTATTCAGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 GTTATTCAGTAATAGTCAATTATTCAGTAA-AATCAGATATT
92612930 TTATTCCTTT
Statistics
Matches: 120, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
53 4 0.03
54 94 0.78
55 22 0.18
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (54 bp):
GTTATTCAGTAATAGTCAATTATTCAGTAAAATCAGATATTCAATAATAATCAA
Found at i:92612862 original size:72 final size:72
Alignment explanation
Indices: 92612727--92612929 Score: 225
Period size: 72 Copynumber: 2.8 Consensus size: 72
92612717 AATTGATCGG
* * * * * * *
92612727 TTATCCAGTAATAGTCAATTATTTAGTAA-AATCAGA-TATTCAATAGTAATTAAGTTATTCAGT
1 TTATCCAGTAACAATCAATTATTCAGTAACAGTCA-ATTATTCAGTAATAA-TCAGTTATTCAGT
92612790 AACAGTC-A
64 AACAGTCTA
* * * * *
92612798 TCTATTCAGTGACAATCAGTTATTCAGTAA-TGATCAATTATTCAGTAATATTCAGTTATTCAGT
1 T-TATCCAGTAACAATCAATTATTCAGTAACAG-TCAATTATTCAGTAATAATCAGTTATTCAGT
92612862 AACAGTCTA
64 AACAGTCTA
*
92612871 TTATCCAGTAACAGTCAATTATTCAGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TTATCCAGTAACAATCAATTATTCAGTAACAGTCAATTATTCAGTAATAATCAGTTATT
92612930 TTATTCCTTT
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
71 1 0.01
72 92 0.84
73 16 0.15
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (72 bp):
TTATCCAGTAACAATCAATTATTCAGTAACAGTCAATTATTCAGTAATAATCAGTTATTCAGTAA
CAGTCTA
Found at i:92612929 original size:36 final size:36
Alignment explanation
Indices: 92612727--92612929 Score: 189
Period size: 36 Copynumber: 5.6 Consensus size: 36
92612717 AATTGATCGG
* * * * *
92612727 TTATCCAGTAATAGTCAATTATTTAGTAA-AATCAGA
1 TTATTCAGTAATAATCAGTTATTCAGTAACAGTCA-A
* * *
92612763 -TATTCAATAGTAATTAAGTTATTCAGTAACAGTC-A
1 TTATTCAGTAATAA-TCAGTTATTCAGTAACAGTCAA
* * *
92612798 TCTATTCAGTGACAATCAGTTATTCAGTAA-TGATCAA
1 T-TATTCAGTAATAATCAGTTATTCAGTAACAG-TCAA
* *
92612835 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTA
1 TTATTCAGTAATAATCAGTTATTCAGTAACAGTCAA
* * * *
92612871 TTATCCAGTAACAGTCAATTATTCAGTAACAGTCAA
1 TTATTCAGTAATAATCAGTTATTCAGTAACAGTCAA
92612907 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAATAATCAGTTATT
92612930 TTATTCCTTT
Statistics
Matches: 132, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
35 11 0.08
36 106 0.80
37 15 0.11
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAATAATCAGTTATTCAGTAACAGTCAA
Found at i:92613156 original size:45 final size:45
Alignment explanation
Indices: 92613100--92613209 Score: 175
Period size: 45 Copynumber: 2.4 Consensus size: 45
92613090 TCCAGAACAG
* *
92613100 TAACAGTAACAGTAATAGTATTCAACACACAAAGTGCTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
* *
92613145 TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
*
92613190 TAACAGTAACGGTAACAGTA
1 TAACAGTAACAGTAACAGTA
92613210 ACAGTAGTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
Found at i:92613200 original size:51 final size:49
Alignment explanation
Indices: 92613094--92613237 Score: 163
Period size: 45 Copynumber: 3.0 Consensus size: 49
92613084 AACAAATCCA
* * * *
92613094 GAACAGTAACAGTAACAGTAATAGTATTCAACACACAAAGTGCTGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC
92613143 G---A-TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC
* * * *
92613188 GATAACAGTAACGGTAACAGTAACAGTAGTCGGCACA-TAAGTGCCTAATC
1 G--AACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC
92613238 AGTAAGCCGG
Statistics
Matches: 81, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
45 40 0.49
46 1 0.01
49 1 0.01
50 12 0.15
51 27 0.33
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.19
Consensus pattern (49 bp):
GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC
Found at i:92616694 original size:19 final size:19
Alignment explanation
Indices: 92616671--92616717 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
92616661 ATTTAATCTA
*
92616671 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
92616689 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
92616709 ATTTTTATT
1 ATTTTTATT
92616718 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:92618037 original size:38 final size:38
Alignment explanation
Indices: 92617986--92618063 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 38
92617976 TTAAGGCAGA
* * *
92617986 GAAGAAAAGAGTTATGGGAAATGTAGAGGATTAGAAAT
1 GAAGAAAAGAGTTAAGGGAAATGGAGAGAATTAGAAAT
* *
92618024 GAAGAAAATAGTTAAGGGAAATGGAGATAATTAGAAAT
1 GAAGAAAAGAGTTAAGGGAAATGGAGAGAATTAGAAAT
92618062 GA
1 GA
92618064 TCCAAACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (38 bp):
GAAGAAAAGAGTTAAGGGAAATGGAGAGAATTAGAAAT
Found at i:92624903 original size:62 final size:62
Alignment explanation
Indices: 92624819--92624943 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
92624809 ATATGTTAGC
* * * *
92624819 ACACTAGGTGTGAGCTTCCCGTGTATATGATATTATTCTAAATGGTTCAACGGGCATATAAA
1 ACACTAAGTGTGAACTTCCCGTGTATATAATATTATTCAAAATGGTTCAACGGGCATATAAA
* *
92624881 ACACTAAGTGTGAACTTTCCGTGTATATAATATTATTCAAAATGGTTCAACGGGCATGTAAA
1 ACACTAAGTGTGAACTTCCCGTGTATATAATATTATTCAAAATGGTTCAACGGGCATATAAA
92624943 A
1 A
92624944 GATGAACCTG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (62 bp):
ACACTAAGTGTGAACTTCCCGTGTATATAATATTATTCAAAATGGTTCAACGGGCATATAAA
Found at i:92634928 original size:21 final size:21
Alignment explanation
Indices: 92634901--92634961 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
92634891 TATAATGAGT
92634901 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
92634922 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
92634943 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
92634962 ATAACAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:92634955 original size:10 final size:11
Alignment explanation
Indices: 92634887--92634961 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
92634877 ACCAAAACCA
*
92634887 TGCATATAATG
1 TGCATATCATG
* *
92634898 AGTATATCAT-
1 TGCATATCATG
*
92634908 AGCATATCATG
1 TGCATATCATG
*
92634919 TGCATCTCAT-
1 TGCATATCATG
**
92634929 AACATATCATG
1 TGCATATCATG
*
92634940 TGCATATTATG
1 TGCATATCATG
92634951 T-CATATCATG
1 TGCATATCATG
92634961 T
1 T
92634962 ATAACAATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:92640600 original size:21 final size:21
Alignment explanation
Indices: 92640573--92640633 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
92640563 TATAATGAGT
92640573 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
92640594 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
92640615 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
92640634 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:92640632 original size:10 final size:10
Alignment explanation
Indices: 92640573--92640633 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
92640563 TATAATGAGT
92640573 ATATCATAG-C
1 ATATCAT-GTC
92640583 ATATCATGTGC
1 ATATCATGT-C
* **
92640594 ATCTCATAAC
1 ATATCATGTC
92640604 ATATCATGTGC
1 ATATCATGT-C
92640615 ATATCATGTC
1 ATATCATGTC
92640625 ATATCATGT
1 ATATCATGT
92640634 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:92659822 original size:64 final size:64
Alignment explanation
Indices: 92659743--92659926 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
92659733 AGACATTATG
* * *
92659743 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
92659807 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
92659872 AA
63 AA
* * *
92659874 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
92659927 CAAAATTATG
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:92675024 original size:32 final size:32
Alignment explanation
Indices: 92674988--92675052 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
92674978 CGTAGATTTA
* *
92674988 ACTAATTAAACTATGTAAAAGAAACAGAGTGT
1 ACTAATTAAACTATGCAAAAGAAACAAAGTGT
92675020 ACTAATTAAACTATGCAAAAGAAACAAAGTGT
1 ACTAATTAAACTATGCAAAAGAAACAAAGTGT
92675052 A
1 A
92675053 AATTGATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (32 bp):
ACTAATTAAACTATGCAAAAGAAACAAAGTGT
Found at i:92676626 original size:28 final size:28
Alignment explanation
Indices: 92676591--92676644 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
92676581 GTAAGGTTTT
92676591 AAAACATTGTATTTAAAGGGGAATGTCA
1 AAAACATTGTATTTAAAGGGGAATGTCA
92676619 AAAACATTGTATTTAAAGGGGAATGT
1 AAAACATTGTATTTAAAGGGGAATGT
92676645 TAACACACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.30
Consensus pattern (28 bp):
AAAACATTGTATTTAAAGGGGAATGTCA
Found at i:92676951 original size:15 final size:15
Alignment explanation
Indices: 92676927--92676959 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
92676917 AAGTGATCTT
92676927 TAGATGT-AAAACTA
1 TAGATGTAAAAACTA
92676941 TAGATTGTAAAAACTA
1 TAGA-TGTAAAAACTA
92676957 TAG
1 TAG
92676960 TAAACTAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 3 0.18
16 10 0.59
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.30
Consensus pattern (15 bp):
TAGATGTAAAAACTA
Found at i:92678304 original size:17 final size:16
Alignment explanation
Indices: 92678282--92678314 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
92678272 GGAACAAGTT
92678282 GAATGAATAAATCGTC
1 GAATGAATAAATCGTC
92678298 NGAATGAATAAATCGTC
1 -GAATGAATAAATCGTC
92678315 CGGTTCGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.24
Consensus pattern (16 bp):
GAATGAATAAATCGTC
Found at i:92679776 original size:15 final size:16
Alignment explanation
Indices: 92679733--92679788 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
92679723 TGTCTACTTC
*
92679733 TATTTAAATTATGATTA
1 TATTT-AATTATGATTT
*
92679750 TATGAATAATTAT-ATTT
1 TAT--TTAATTATGATTT
*
92679767 TATTTAATTATGTTTT
1 TATTTAATTATGATTT
92679783 TATTTA
1 TATTTA
92679789 TTTGTAGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
15 7 0.22
16 9 0.28
17 9 0.28
18 6 0.19
19 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (16 bp):
TATTTAATTATGATTT
Found at i:92681864 original size:56 final size:56
Alignment explanation
Indices: 92681792--92681908 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
92681782 TGTGTGAAGA
*
92681792 CCTCTCTTCTCATTCTCAACAAAAAGTCTCTCATTCTAATTCCTTCTTGTATTCTT
1 CCTCTCTTCTCATTCTCAACAAAAAGTCTCTCATTCTAATTCCTTCTTCTATTCTT
*
92681848 CCTCTCTTCTCATTCTCAACAAAAAGTCTCTCCTTCTAATTCCTTCTTCTATTCTT
1 CCTCTCTTCTCATTCTCAACAAAAAGTCTCTCATTCTAATTCCTTCTTCTATTCTT
92681904 CCTCT
1 CCTCT
92681909 TGTAATAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.20, C:0.33, G:0.03, T:0.44
Consensus pattern (56 bp):
CCTCTCTTCTCATTCTCAACAAAAAGTCTCTCATTCTAATTCCTTCTTCTATTCTT
Found at i:92683495 original size:27 final size:26
Alignment explanation
Indices: 92683465--92683571 Score: 137
Period size: 27 Copynumber: 4.0 Consensus size: 26
92683455 GTTGGGCACT
92683465 ATTTTACCCTCGATTTAAAGAATTATC
1 ATTTTACCCTCGATTTAAAGAATTA-C
*
92683492 ATTTTACCCTC-AGTTTACAGAATTAC
1 ATTTTACCCTCGA-TTTAAAGAATTAC
*
92683518 TATTTTACCCTCGATTTACAGAATTACC
1 -ATTTTACCCTCGATTTAAAGAATTA-C
92683546 ATTTTACCCTCGATTTAGAA-AATTAC
1 ATTTTACCCTCGATTTA-AAGAATTAC
92683572 TAAAATACCC
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
26 3 0.04
27 67 0.92
28 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (26 bp):
ATTTTACCCTCGATTTAAAGAATTAC
Found at i:92683549 original size:54 final size:54
Alignment explanation
Indices: 92683462--92683573 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
92683452 TGGGTTGGGC
* *
92683462 ACTATTTTACCCTCGATTTAAAGAATTATCATTTTACCCTC-AGTTTACAGAATT
1 ACTATTTTACCCTCGATTTAAAGAATTACCATTTTACCCTCGA-TTTACAAAATT
* *
92683516 ACTATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAGAAAATT
1 ACTATTTTACCCTCGATTTAAAGAATTACCATTTTACCCTCGATTTACAAAATT
92683570 ACTA
1 ACTA
92683574 AAATACCCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 52 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (54 bp):
ACTATTTTACCCTCGATTTAAAGAATTACCATTTTACCCTCGATTTACAAAATT
Found at i:92683580 original size:27 final size:27
Alignment explanation
Indices: 92683523--92683608 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
92683513 ATTACTATTT
* * * ***
92683523 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTAGAAAATTACTAAAA
92683550 TACCCTCGATTTAGAAAATTACTAAAA
1 TACCCTCGATTTAGAAAATTACTAAAA
*
92683577 TACCC-CTGGTTT-GTAAAATTACTAAAA
1 TACCCTC-GATTTAG-AAAATTACTAAAA
92683604 TACCC
1 TACCC
92683609 CTATAAGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTAGAAAATTACTAAAA
Found at i:92683623 original size:27 final size:27
Alignment explanation
Indices: 92683566--92683955 Score: 403
Period size: 27 Copynumber: 14.2 Consensus size: 27
92683556 CGATTTAGAA
* ** *
92683566 AATTACTAAAATACCCCTGGT-TTGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
* * *
92683593 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
92683620 AATTACTG-AATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
92683646 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
92683673 AATTACTGAAATATCCCTGTACCCCTGTAGGGTAG
1 AATTACTG-AA-A------TACCCCTGTAGGGTAG
92683708 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
92683735 AATTA-TCGAAATACCCCTATAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
92683762 AATTACCGAAATACCCCTGTAGGGTAT
1 AATTACTGAAATACCCCTGTAGGGTAG
*
92683789 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
92683816 AATTACCGAAATAACCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
92683843 AATTA-TCGCAATACCCCTATAGGTTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
92683870 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
92683897 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
92683924 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
92683950 AATTAC
1 AATTAC
92683956 CATTTTGCCC
Statistics
Matches: 307, Mismatches: 42, Indels: 29
0.81 0.11 0.08
Matches are distributed among these distances:
26 40 0.13
27 237 0.77
28 2 0.01
29 1 0.00
33 1 0.00
34 2 0.01
35 24 0.08
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:92683703 original size:35 final size:35
Alignment explanation
Indices: 92683657--92683728 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
92683647 ATTACCGAAA
*
92683657 TACCCCTGTAGGGTAGAATTACTGAAATATCCCTG
1 TACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
92683692 TACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
1 TACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
92683727 TA
1 TA
92683729 GGGTAGAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (35 bp):
TACCCCTGTAGGGTAGAATTACTGAAATACCCCTG
Found at i:92684188 original size:27 final size:26
Alignment explanation
Indices: 92684150--92684232 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
92684140 CGGAGGAAGC
*
92684150 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
92684177 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
92684203 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
92684230 GTT
1 GTT
92684233 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:92684352 original size:22 final size:22
Alignment explanation
Indices: 92684320--92684378 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
92684310 CCCGTTATTA
*
92684320 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
92684342 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
92684364 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
92684379 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:92684565 original size:27 final size:27
Alignment explanation
Indices: 92684543--92684616 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
92684533 TAGGTGGGTT
*
92684543 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
92684570 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
92684597 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
92684617 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:92684768 original size:19 final size:19
Alignment explanation
Indices: 92684762--92684916 Score: 97
Period size: 19 Copynumber: 7.9 Consensus size: 19
92684752 TTACCTGATA
92684762 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
92684781 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
*
92684799 CTGATTCTAATTCTGTTACC
1 CTGATTCTGATTCTGTTA-C
92684819 TGATACTGATTCTGATTCTGTTAC
1 -----CTGATTCTGATTCTGTTAC
* *
92684843 CTAATTCTAATTCTAGTT-C
1 CTGATTCTGATTCT-GTTAC
* *
92684862 C-GATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
* *
92684880 TTGATTTTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
*
92684898 CTGACTCTGATTCTAGTTA
1 CTGATTCTGATTCT-GTTA
92684917 TGATAATGTT
Statistics
Matches: 106, Mismatches: 15, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
17 5 0.05
18 35 0.33
19 41 0.39
20 7 0.07
24 1 0.01
25 17 0.16
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:92684771 original size:6 final size:6
Alignment explanation
Indices: 92684734--92684911 Score: 89
Period size: 6 Copynumber: 28.8 Consensus size: 6
92684724 TTGCATTCAC
* * * *
92684734 ATTCTG ATTATC ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
92684784 ATTCTG ATTCTG GTTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * *
92684833 ATTCTG -TTACCTA ATTCTA ATTCT- AGTTCCG ATTTTG ATTCTG -TCACTTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG AT-TC-TG
* *
92684883 ATTTTG ATTCTG ATTCTG ACTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
92684912 AGTTATGATA
Statistics
Matches: 130, Mismatches: 25, Indels: 34
0.69 0.13 0.18
Matches are distributed among these distances:
5 10 0.08
6 100 0.77
7 13 0.10
8 7 0.05
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:92684793 original size:25 final size:25
Alignment explanation
Indices: 92684734--92684813 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
92684724 TTGCATTCAC
* * *
92684734 ATTCTGATTATCATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
92684759 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
92684784 ATTCTGATTCTGGTTCTGATT--CTA
1 ATTCTGATTCTGATTCTG-TTACCTA
92684808 ATTCTG
1 ATTCTG
92684814 TTACCTGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 9 0.19
25 37 0.77
26 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:92684803 original size:37 final size:37
Alignment explanation
Indices: 92684756--92684838 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
92684746 ATTCTGTTAC
* * *
92684756 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
* *
92684793 CTGGTTCTGATTCTAATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
92684830 CTGATTCTG
1 CTGATTCTG
92684839 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
Found at i:92684832 original size:62 final size:62
Alignment explanation
Indices: 92684735--92684900 Score: 233
Period size: 62 Copynumber: 2.7 Consensus size: 62
92684725 TGCATTCACA
* * *
92684735 TTCTGATTATCATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTATAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTAG
*
92684797 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTAG
1 TTCTGATTATAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTAG
* * * * * **
92684859 TTCCGATTTTGATTCTGTCACTTGATTTTGATTCTGATTCTG
1 TTCTGATTATAATTCTGTTACCTGATACTGATTCTGATTCTG
92684901 ACTCTGATTC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 93 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (62 bp):
TTCTGATTATAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTAG
Found at i:92684855 original size:25 final size:25
Alignment explanation
Indices: 92684797--92684857 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
92684787 CTGATTCTGG
*
92684797 TTCTGATTCTAATTCTGTTACCTGA
1 TTCTGATTCTAATTCTGTTACCTAA
* *
92684822 TACTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTAATTCTGTTACCTAA
*
92684847 TTCTAATTCTA
1 TTCTGATTCTA
92684858 GTTCCGATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.48
Consensus pattern (25 bp):
TTCTGATTCTAATTCTGTTACCTAA
Found at i:92689287 original size:40 final size:40
Alignment explanation
Indices: 92689235--92690391 Score: 2084
Period size: 40 Copynumber: 28.9 Consensus size: 40
92689225 ATTACCACAA
* * ** *
92689235 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
92689275 GCACGAATGCCTTCGGGCCTTAGCCCGGATATATCAACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689315 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
92689355 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATTC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-TCAACTC
* * *
92689395 GCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-A--ACTC
** * * *
92689438 GCACAAATGCCTTCGGAACTTCGCCCGGACATAGTC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-TCAACTC
92689478 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
92689518 GCACAAATGCCTTCGGGCCTTAGCCCGGATATATCAACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689558 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689598 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689638 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689678 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689718 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689758 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689798 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689838 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689878 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689918 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689958 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92689998 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690038 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690078 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690118 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690158 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690198 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690238 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690278 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690318 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92690358 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
92690392 TCAAATGCTC
Statistics
Matches: 1079, Mismatches: 31, Indels: 14
0.96 0.03 0.01
Matches are distributed among these distances:
39 3 0.00
40 1041 0.96
41 2 0.00
43 32 0.03
44 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:92694122 original size:27 final size:27
Alignment explanation
Indices: 92694092--92694216 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
92694082 CAATATTTGA
*
92694092 AAAATTACCGAAATACCCTCGATGGGT
1 AAAATGACCGAAATACCCTCGATGGGT
* *
92694119 AAAATGACCGAAATACCTTCTATGGGT
1 AAAATGACCGAAATACCCTCGATGGGT
* ** *
92694146 AAAATAATAGAAATACCCTTGATGGGT
1 AAAATGACCGAAATACCCTCGATGGGT
**
92694173 AAAATGATTGAAATACCCTCG-TAGGGT
1 AAAATGACCGAAATACCCTCGAT-GGGT
*
92694200 AAAATGACCGTAATACC
1 AAAATGACCGAAATACC
92694217 TTTGTAAGGT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 81 0.99
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTCGATGGGT
Found at i:92694227 original size:27 final size:27
Alignment explanation
Indices: 92694116--92694256 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 27
92694106 ACCCTCGATG
* * *
92694116 GGTAAAATGACCGAAATA-CCTTCTATG
1 GGTAAAATGACCGTAATACCCTTGTA-A
* ** * *
92694143 GGTAAAATAATAGAAATACCCTTG-ATG
1 GGTAAAATGACCGTAATACCCTTGTA-A
** * * *
92694170 GGTAAAATGATTGAAATACCCTCGTAG
1 GGTAAAATGACCGTAATACCCTTGTAA
*
92694197 GGTAAAATGACCGTAATACCTTTGTAA
1 GGTAAAATGACCGTAATACCCTTGTAA
* *
92694224 GGTAAAATAACCGTAATACCCCTGT-A
1 GGTAAAATGACCGTAATACCCTTGTAA
92694250 GGTAAAA
1 GGTAAAA
92694257 CAATAACTAT
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.08
27 83 0.86
28 5 0.05
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCTTGTAA
Found at i:92698772 original size:20 final size:20
Alignment explanation
Indices: 92698747--92698785 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
92698737 TTGCTTCTTA
92698747 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TACTTACTTG
92698767 TTTACTTACTTACTTACTT
1 TTTACTTACTTACTTACTT
92698786 ACTTAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTACTTACTTG
Found at i:92698775 original size:4 final size:4
Alignment explanation
Indices: 92698743--92698790 Score: 53
Period size: 4 Copynumber: 12.0 Consensus size: 4
92698733 GTCTTTGCTT
* * *
92698743 CTTA TTTA CTTA CTCT- CTTA CTTG TTTA CTTA CTTA CTTA CTTA CTTA
1 CTTA CTTA CTTA CT-TA CTTA CTTA CTTA CTTA CTTA CTTA CTTA CTTA
92698791 AATAAATCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
3 1 0.03
4 34 0.94
5 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.02, T:0.54
Consensus pattern (4 bp):
CTTA
Found at i:92699132 original size:50 final size:50
Alignment explanation
Indices: 92699060--92699184 Score: 128
Period size: 50 Copynumber: 2.5 Consensus size: 50
92699050 TATCCCAGAT
* ** * *
92699060 ATGGTCTTACATGGGAGTTCTCATATC-AGTGCCCATGCCATGTCCT-AGAC
1 ATGGTCTTACGTGGGACCTCTCATATCGAG-GCCAACGCCATGT-CTGAGAC
* * *
92699110 ATGGTCTTACGGGGGACCTCTCATCTCGAGGCCAACGCCATGTCTGGGAC
1 ATGGTCTTACGTGGGACCTCTCATATCGAGGCCAACGCCATGTCTGAGAC
* *
92699160 ATAGTCTTACGTGGGACCTTTCATA
1 ATGGTCTTACGTGGGACCTCTCATA
92699185 ACCTCAATAA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
49 2 0.03
50 57 0.93
51 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACGTGGGACCTCTCATATCGAGGCCAACGCCATGTCTGAGAC
Found at i:92706471 original size:20 final size:20
Alignment explanation
Indices: 92706436--92706484 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
92706426 ATCATGGTCT
*
92706436 TTGCTT-CTTATTTACTTAC
1 TTGCTTACTTGTTTACTTAC
92706455 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
92706475 TTGCTTACTT
1 TTGCTTACTT
92706485 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.14, C:0.22, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:92706810 original size:50 final size:50
Alignment explanation
Indices: 92706748--92706879 Score: 183
Period size: 50 Copynumber: 2.6 Consensus size: 50
92706738 CAATGCCAAA
* * ** * * *
92706748 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACGTGGGACCTCTCATATCGATGCCAACGCCATG
* *
92706798 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGATGCCAACGCCATG
1 TCCCAGACATGGTCTTACGTGGGACCTCTCATATCGATGCCAACGCCATG
92706848 TCCCAGACATGGTCTTACGTGGGACCTCTCAT
1 TCCCAGACATGGTCTTACGTGGGACCTCTCAT
92706880 TACCTCAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACGTGGGACCTCTCATATCGATGCCAACGCCATG
Found at i:92706911 original size:56 final size:51
Alignment explanation
Indices: 92706793--92706935 Score: 150
Period size: 50 Copynumber: 2.8 Consensus size: 51
92706783 GGTGCCCATG
* * *
92706793 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCA-TCTCGATGCCAACG
1 CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATTCTCAATGCCAACC
*
92706843 CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATTACCTCAATAATGTC-ACTC
1 CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATT--CTC---AATGCCAAC-C
* *
92706899 CCATGTCCCAGACATGATCTTACATGGGA--TCTCATTC
1 CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATTC
92706936 CCTTAATGTC
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
50 35 0.44
51 1 0.01
52 1 0.01
53 3 0.04
54 7 0.09
55 2 0.03
56 31 0.39
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (51 bp):
CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATTCTCAATGCCAACC
Found at i:92710017 original size:26 final size:26
Alignment explanation
Indices: 92709979--92710033 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
92709969 GTATATATTT
**
92709979 TTTCTTATAACCATTTCACTTAAACA
1 TTTCTTATAACCATAACACTTAAACA
* * *
92710005 TTTCTTCTTACCATAACACTTACACA
1 TTTCTTATAACCATAACACTTAAACA
92710031 TTT
1 TTT
92710034 AATAAATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (26 bp):
TTTCTTATAACCATAACACTTAAACA
Found at i:92715802 original size:20 final size:20
Alignment explanation
Indices: 92715760--92715816 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 20
92715750 GATGCATAAC
* *
92715760 AGGGCACCGAAGTGCAGACA
1 AGGGCACAGAAGTGCAAACA
* *
92715780 AGGGCACAGATGTGCAAATA
1 AGGGCACAGAAGTGCAAACA
* * *
92715800 AGGACACTGTAGTGCAA
1 AGGGCACAGAAGTGCAA
92715817 GCAGGGACGC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.37, C:0.19, G:0.32, T:0.12
Consensus pattern (20 bp):
AGGGCACAGAAGTGCAAACA
Found at i:92723486 original size:79 final size:78
Alignment explanation
Indices: 92723384--92723606 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
92723374 GCTCCTCGTT
* *
92723384 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
92723449 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
92723464 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCTGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
92723527 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
92723542 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
92723605 GA
63 GA
92723607 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:92723501 original size:39 final size:40
Alignment explanation
Indices: 92723384--92723606 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
92723374 GCTCCTCGTT
* *
92723384 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
92723424 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92723464 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
92723503 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
92723542 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
92723583 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92723607 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:92736162 original size:20 final size:20
Alignment explanation
Indices: 92736116--92736162 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
92736106 AGCTCGTTTC
*
92736116 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
92736136 CAACTCACTCAAGTTCAATT
1 CAGCTCACTCAAGCTCAAGT
92736156 CAGCTCA
1 CAGCTCA
92736163 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:92738102 original size:79 final size:81
Alignment explanation
Indices: 92737966--92738148 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
92737956 TCGAATGATG
* *
92737966 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
92738030 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
92738045 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
92738107 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
92738125 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
92738149 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:92738164 original size:40 final size:40
Alignment explanation
Indices: 92737967--92738150 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
92737957 CGAATGATGT
* * * *
92737967 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
92738007 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
92738047 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92738085 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92738126 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92738151 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92738172 original size:79 final size:79
Alignment explanation
Indices: 92738019--92738183 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
92738009 GGACTAAGAT
* **
92738019 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
92738084 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
92738098 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
92738161 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
92738177 CCGAAGG
1 CCGAAGG
92738184 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:92745312 original size:27 final size:23
Alignment explanation
Indices: 92745252--92745312 Score: 59
Period size: 27 Copynumber: 2.4 Consensus size: 23
92745242 AGATTTAAAG
*
92745252 TTTTAATTTATGTTCCAATTAGA
1 TTTTAATTTATGTTCAAATTAGA
*
92745275 TTTTAAGTTTATTAAGTTCAAATTGGA
1 TTTTAA-TTTA-T--GTTCAAATTAGA
92745302 TTTTTAATTTA
1 -TTTTAATTTA
92745313 AATTGAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 6 0.19
24 4 0.13
25 1 0.03
27 14 0.45
28 6 0.19
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (23 bp):
TTTTAATTTATGTTCAAATTAGA
Found at i:92747169 original size:15 final size:16
Alignment explanation
Indices: 92747126--92747172 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
92747116 GATTTATAAT
*
92747126 TTGAAAAAAAAATTTA
1 TTGAAAAAAACATTTA
* **
92747142 TTTAAAAGTACATTTA
1 TTGAAAAAAACATTTA
92747158 -TGAAAAAAACATTTA
1 TTGAAAAAAACATTTA
92747173 AAAATTTATA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (16 bp):
TTGAAAAAAACATTTA
Found at i:92748064 original size:18 final size:19
Alignment explanation
Indices: 92748031--92748070 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
92748021 TAATTTTTAT
*
92748031 ATATTATAAATTACATAAC
1 ATATTATAAATAACATAAC
92748050 ATATTA-AAATAACATAAC
1 ATATTATAAATAACATAAC
92748068 ATA
1 ATA
92748071 AAATATTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (19 bp):
ATATTATAAATAACATAAC
Found at i:92749694 original size:100 final size:100
Alignment explanation
Indices: 92749582--92749783 Score: 404
Period size: 100 Copynumber: 2.0 Consensus size: 100
92749572 AATTATTTTC
92749582 ATTAAATATTTTTTTTAGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTA
1 ATTAAATATTTTTTTTAGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTA
92749647 TTAAGTGTTTGATTAAAGTAGGGGAATTAAATCAA
66 TTAAGTGTTTGATTAAAGTAGGGGAATTAAATCAA
92749682 ATTAAATATTTTTTTTAGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTA
1 ATTAAATATTTTTTTTAGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTA
92749747 TTAAGTGTTTGATTAAAGTAGGGGAATTAAATCAA
66 TTAAGTGTTTGATTAAAGTAGGGGAATTAAATCAA
92749782 AT
1 AT
92749784 AAGTGATAAA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 102 1.00
ACGTcount: A:0.36, C:0.03, G:0.20, T:0.41
Consensus pattern (100 bp):
ATTAAATATTTTTTTTAGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTA
TTAAGTGTTTGATTAAAGTAGGGGAATTAAATCAA
Found at i:92749802 original size:100 final size:100
Alignment explanation
Indices: 92749598--92749804 Score: 335
Period size: 100 Copynumber: 2.1 Consensus size: 100
92749588 TATTTTTTTT
92749598 AGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTATTAAGTGTTTGATTAA
1 AGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTATTAAGTGTTTGATTAA
***** *
92749663 AGTAGGGGAATTAAATCAAATTAAATATTTTTTTT
66 AGTAGGGGAATTAAATCAAATTAAATATAAAAATA
92749698 AGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTATTAAGTGTTTGATTAA
1 AGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTATTAAGTGTTTGATTAA
*
92749763 AGTAGGGGAATTAAATCAAA-TAAGTGATAAAAATA
66 AGTAGGGGAATTAAATCAAATTAAAT-ATAAAAATA
92749798 AGAATTT
1 AGAATTT
92749805 AAATTAAATT
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 4 0.04
100 95 0.96
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.38
Consensus pattern (100 bp):
AGAATTTGTCTTAGGAGGGAATTGTATGATAGTTAGATAATTCTAAGTATTAAGTGTTTGATTAA
AGTAGGGGAATTAAATCAAATTAAATATAAAAATA
Found at i:92753530 original size:70 final size:70
Alignment explanation
Indices: 92753417--92753632 Score: 287
Period size: 70 Copynumber: 3.1 Consensus size: 70
92753407 TTCTTGGTGA
* * *
92753417 GCACAACTATCGTCAGTTATCCGACTAGCGCTGGGCAT-AATAATTTGTTGACTTGTTCAACTAG
1 GCACAACTATCGTCAGTTATTCGACTAGCGCTGGGC-TCAATAATTTGTCGACTTGTTCGACTAG
*
92753481 TG-TCGG
65 TGCT-AG
* *
92753487 GCACAACTATCAT-AGGTTATTCGACTAGCTCTGGGCTCAATAATTTGTCGACTTGTTCGACTAG
1 GCACAACTATCGTCA-GTTATTCGACTAGCGCTGGGCTCAATAATTTGTCGACTTGTTCGACTAG
92753551 TGCTAG
65 TGCTAG
* * *
92753557 GCACAACTATCGTCAGTTATAT-GACTAGCGCTGGACACAATAATTTGTCGATTTGTTCGACTAG
1 GCACAACTATCGTCAGTTAT-TCGACTAGCGCTGGGCTCAATAATTTGTCGACTTGTTCGACTAG
92753621 TGCTAG
65 TGCTAG
92753627 GCACAA
1 GCACAA
92753633 AAATGATCTT
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
69 2 0.02
70 125 0.96
71 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (70 bp):
GCACAACTATCGTCAGTTATTCGACTAGCGCTGGGCTCAATAATTTGTCGACTTGTTCGACTAGT
GCTAG
Found at i:92753619 original size:36 final size:35
Alignment explanation
Indices: 92753506--92753632 Score: 100
Period size: 36 Copynumber: 3.6 Consensus size: 35
92753496 TCATAGGTTA
* *
92753506 TTCGACTAGCTCTGGGCTCAATAATTTGTCGACTTG
1 TTCGACTAGCGCT-GGCACAATAATTTGTCGACTTG
* * * *
92753542 TTCGACTAGTGCTAGGCACAACT-A-TCGTC-AGTTA
1 TTCGACTAGCGCT-GGCACAA-TAATTTGTCGACTTG
*
92753576 TAT-GACTAGCGCTGGACACAATAATTTGTCGATTTG
1 T-TCGACTAGCGCTGG-CACAATAATTTGTCGACTTG
*
92753612 TTCGACTAGTGCTAGGCACAA
1 TTCGACTAGCGCT-GGCACAA
92753633 AAATGATCTT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
33 3 0.04
34 19 0.27
35 10 0.14
36 36 0.51
37 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (35 bp):
TTCGACTAGCGCTGGCACAATAATTTGTCGACTTG
Found at i:92756441 original size:27 final size:27
Alignment explanation
Indices: 92756400--92756453 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
92756390 TGTCATGTGA
* *
92756400 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
92756427 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
92756454 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:92756689 original size:49 final size:49
Alignment explanation
Indices: 92756601--92756789 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
92756591 TGAGGTCACG
* *
92756601 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
* * * * * * *
92756650 TGTGTAGTACTAAGTGCAGCCTATTATGCGTACCCGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA--TTGGTCGCA
* *
92756701 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
* * *
92756750 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA
92756790 CCTTGTCTAC
Statistics
Matches: 115, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 75 0.65
51 40 0.35
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
Found at i:92756778 original size:100 final size:100
Alignment explanation
Indices: 92756596--92756790 Score: 336
Period size: 100 Copynumber: 1.9 Consensus size: 100
92756586 TATTGTGAGG
*
92756596 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTACT
* * *
92756661 AAGTGCAGCCTATTATGCGTACCCGATAACTTTGA
66 AAGTGCAGCCTACTATGCATACCAGATAACTTTGA
*
92756696 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTACT
*
92756761 AAGTGCAGGCTACTATGCATACCAGATAAC
66 AAGTGCAGCCTACTATGCATACCAGATAAC
92756791 CTTGTCTACA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACAGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGCCTACTATGCATACCAGATAACTTTGA
Found at i:92759607 original size:96 final size:95
Alignment explanation
Indices: 92759442--92759641 Score: 283
Period size: 96 Copynumber: 2.1 Consensus size: 95
92759432 TTACTTTCTT
* * * * * **
92759442 CTCTAGTTGGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACTT
1 CTCTATTTGAATATTTAATTGGACATTGGAAACCCTCATGATATTTTCAACTACACCAATAACAG
* *
92759507 TGCACAAAAGGTTATATCTCAATCGTATTCC
66 TGCACAAAAGGTGATAGCTCAATCGTATT-C
* *
92759538 CTCTATTTGAATATTTAATTGGACATTGGAAAGCCTCGTGATATTTTCAACTACACCAATAACAG
1 CTCTATTTGAATATTTAATTGGACATTGGAAACCCTCATGATATTTTCAACTACACCAATAACAG
92759603 TGCACAAAAGGTGATAGCTCAATCGTATTC
66 TGCACAAAAGGTGATAGCTCAATCGTATTC
*
92759633 CTCTTTTTG
1 CTCTATTTG
92759642 TTTGGCCCTC
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 9 0.10
96 83 0.90
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (95 bp):
CTCTATTTGAATATTTAATTGGACATTGGAAACCCTCATGATATTTTCAACTACACCAATAACAG
TGCACAAAAGGTGATAGCTCAATCGTATTC
Found at i:92761720 original size:15 final size:16
Alignment explanation
Indices: 92761677--92761723 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
92761667 GATTTATAAT
*
92761677 TTGAAAAAAAAATTTA
1 TTGAAAAAAACATTTA
* **
92761693 TTTAAAAGTACATTTA
1 TTGAAAAAAACATTTA
92761709 -TGAAAAAAACATTTA
1 TTGAAAAAAACATTTA
92761724 AAAATTTATA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (16 bp):
TTGAAAAAAACATTTA
Done.