Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 282 of 310
Found at i:92765276 original size:6 final size:6
Alignment explanation
Indices: 92765242--92765307 Score: 51
Period size: 6 Copynumber: 11.0 Consensus size: 6
92765232 GTAGGATCTA
* * * * ***
92765242 TATTTG TATTCG TGTTTG TATTAG TATTTG TATTTG CATAAA TATTTG
1 TATTTG TATTTG TATTTG TATTTG TATTTG TATTTG TATTTG TATTTG
* *
92765290 TATCTA TATTTG TATTTG
1 TATTTG TATTTG TATTTG
92765308 CTACTAAGAC
Statistics
Matches: 42, Mismatches: 18, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.23, C:0.05, G:0.15, T:0.58
Consensus pattern (6 bp):
TATTTG
Found at i:92770168 original size:85 final size:84
Alignment explanation
Indices: 92770067--92770617 Score: 383
Period size: 85 Copynumber: 6.6 Consensus size: 84
92770057 TATTAAATCA
* * * *
92770067 AAATAGAATCTGTTAAACGGTGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTCTAAT
1 AAATAAAAT-TGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTCTCAT
92770132 TTGAAAACAAAAT-AAAATT
65 TTGAAAACAAAATAAAAATT
* * * * * *
92770151 AAATAAAATCTTATTAAATGACGGGAATAAATCCTGAAATAGATTTTATTTAATTTTAATTTCTC
1 AAATAAAA--TTGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAA-TTCTC
* ** * *
92770216 GTTTTGGCAACAAACTAAAAAAT
63 -ATTTGAAAACAAAATAAAAATT
** *
92770239 AGAATAAAATATGTTGAACGATAAGAATAAATCCCGAAACAGA---T-TTT-A-TTTAGTTCTCA
1 A-AATAAAAT-TGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTCTCA
* *
92770298 TTTGGAAATC-AAATAAAAATG
64 TTT-GAAAACAAAATAAAAATT
* * * * * *
92770319 GAATAAAGTTTGTTGAATGGTGGGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTCTCGT
1 AAATAAA-ATTGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTCTCAT
* * *
92770384 TTGGAAATAAAATAAAAATG
65 TTGAAAACAAAATAAAAATT
* * * * * *
92770404 GAATAAAATCCGTTGAACGGTGGGAATAAATCCCGAAATAGATTTTATTCACTTTT-A-----AT
1 AAATAAAAT-TGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTCTCAT
* **
92770463 TTGGAAACAAAAT-CGAA-T
65 TTGAAAACAAAATAAAAATT
* * * * *
92770481 AAAT---A-TGTTAAACGATAGGAATAAATCCTGAAACAAATTTTATTTAATTTTAATAT-TCGT
1 AAATAAAATTGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAAT-TCTCAT
*
92770541 TTGGAAATA-AAAAT-AAAATAA
65 TT-GAAA-ACAAAATAAAAAT-T
**
92770562 AGAATAAAATCTGTTGAACGACAGGAATAAATCCCGAAACAGATTTTATTTAATTT
1 A-AATAAAAT-TGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTT
92770618 AAAATTTTAT
Statistics
Matches: 363, Mismatches: 71, Indels: 63
0.73 0.14 0.13
Matches are distributed among these distances:
72 37 0.10
73 1 0.00
74 1 0.00
77 3 0.01
78 5 0.01
79 57 0.16
80 13 0.04
81 9 0.02
82 8 0.02
83 4 0.01
84 16 0.04
85 114 0.31
86 5 0.01
87 53 0.15
88 30 0.08
89 7 0.02
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (84 bp):
AAATAAAATTGTTGAACGATGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATTCTCATT
TGAAAACAAAATAAAAATT
Found at i:92772757 original size:43 final size:43
Alignment explanation
Indices: 92772631--92772788 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 43
92772621 GTGTGATATT
* *
92772631 GTGTAAGACCACGTCTAGGACATTGGCATCGACT-TGTGATTTGC
1 GTGTAAGACCATGTCTAGGACATTGGCATCGA-TATATGATTT-C
*
92772675 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTC
* * * * * *
92772717 GTGTAAAACCTTGTCTGGGACAATGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTC
* *
92772760 ATGTAAGACCATGTCTAGGACGTTGGCAT
1 GTGTAAGACCATGTCTAGGACATTGGCAT
92772789 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 29 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTC
Found at i:92782278 original size:20 final size:20
Alignment explanation
Indices: 92782253--92782292 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
92782243 AATTTATACC
*
92782253 CATTCTATCTAAAAGGGGAG
1 CATTCTATCTAAAAAGGGAG
92782273 CATTCTATCTAAAAAGGGAG
1 CATTCTATCTAAAAAGGGAG
92782293 AAGTTTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (20 bp):
CATTCTATCTAAAAAGGGAG
Found at i:92787042 original size:23 final size:22
Alignment explanation
Indices: 92787016--92787081 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 22
92787006 TGTTATGAAT
92787016 TAAAAGAATTGAGAGAGTAAAAG
1 TAAAAGAA-TGAGAGAGTAAAAG
* *
92787039 TAAAAGAAATAAGTGAGTAAAAG
1 TAAAAG-AATGAGAGAGTAAAAG
*
92787062 TAATATTGAATGAGAGAGTA
1 TAA-A-AGAATGAGAGAGTA
92787082 CACTCATCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 21 0.60
24 13 0.37
25 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (22 bp):
TAAAAGAATGAGAGAGTAAAAG
Found at i:92790439 original size:24 final size:23
Alignment explanation
Indices: 92790411--92790459 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
92790401 CAAACCAGAA
*
92790411 CATTTACACACA-ATTCATATACAT
1 CATTTACAAACATATTCA-A-ACAT
92790435 CATTTACAAACATATTCAAACAT
1 CATTTACAAACATATTCAAACAT
92790458 CA
1 CA
92790460 ATATTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 12 0.52
25 5 0.22
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (23 bp):
CATTTACAAACATATTCAAACAT
Found at i:92793313 original size:41 final size:41
Alignment explanation
Indices: 92793239--92793382 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
92793229 CAACATACCG
*
92793239 GCTAAATGTGGCACTTA---TGCGGTTCGAAAATAGCTTCA
1 GCTAAATGTGGCACTTAGTGTGCGGTTCAAAAATAGCTTCA
*
92793277 GCTAAATGTGGCACTTAGTGTGCGGTTCAAAAATAGCTTCG
1 GCTAAATGTGGCACTTAGTGTGCGGTTCAAAAATAGCTTCA
* **
92793318 GCTAAATGTGGTACTTAGTGTGTTGTTCAAAAATAGCTTCA
1 GCTAAATGTGGCACTTAGTGTGCGGTTCAAAAATAGCTTCA
* *
92793359 GTTAAATGTGGCATTTAGTGTGCG
1 GCTAAATGTGGCACTTAGTGTGCG
92793383 ATTTGAGATA
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
38 17 0.18
41 75 0.82
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (41 bp):
GCTAAATGTGGCACTTAGTGTGCGGTTCAAAAATAGCTTCA
Found at i:92793450 original size:28 final size:28
Alignment explanation
Indices: 92793410--92793509 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 28
92793400 CTATGTACGG
92793410 CACTTAGTGTGCGAGATATTGAGTATGA
1 CACTTAGTGTGCGAGATATTGAGTATGA
* * * *
92793438 CACTTAGTGTGCGAAACATTGAGAATGG
1 CACTTAGTGTGCGAGATATTGAGTATGA
* * *
92793466 CACTTAGTGGGCGAGTTGTTGAGTATGA
1 CACTTAGTGTGCGAGATATTGAGTATGA
*
92793494 CACTTAGTGTGTGAGA
1 CACTTAGTGTGCGAGA
92793510 CATCAAATAT
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.30
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATTGAGTATGA
Found at i:92795357 original size:39 final size:39
Alignment explanation
Indices: 92795312--92795393 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
92795302 AAGCAAGACA
*
92795312 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGCATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
92795351 CTGGAAATGCATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGCATCCGGGCTAAAGACCCGCAGGCTTCGTG
92795390 CTGG
1 CTGG
92795394 TAACATAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.22
Consensus pattern (39 bp):
CTGGAAATGCATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:92804995 original size:44 final size:42
Alignment explanation
Indices: 92804862--92805010 Score: 142
Period size: 44 Copynumber: 3.5 Consensus size: 42
92804852 AATACCAATA
** * *
92804862 TCCCAGATGTGGTCTTACATGT-AATCAAACATCAATGCC-ACTG
1 TCCCAGACATGGTCTTACACGTAAATC-AA-ATCGATGCCAAC-G
* * *
92804905 TCCCAGACAGGGTCTTACACG-AAATCAAATATGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAAATCAAAT-CGATGCCAACG
*
92804947 TCCCAGATATGGTCTTACACGTAAATCATAAGTCGATGCCAACG
1 TCCCAGACATGGTCTTACACGTAAATCA-AA-TCGATGCCAACG
*
92804991 TCCCAGACGTGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
92805011 AATAACACAT
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 27 0.31
43 28 0.32
44 29 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATCGATGCCAACG
Found at i:92808017 original size:152 final size:152
Alignment explanation
Indices: 92807724--92808028 Score: 470
Period size: 152 Copynumber: 2.0 Consensus size: 152
92807714 AATCATTCAA
* *
92807724 TCACTAAAACTTTTAGACCAAACTTCAATTCACTTATATAAAAACTCCATAAATATTTAATAAAA
1 TCACCAAAACTTTTAGACCAAACTTCAATTCACCTATATAAAAACTCCATAAATATTTAATAAAA
* * * *
92807789 ATATTCACGGGCTCGATTTAAGAAAACAAGGTCTCGATACCTCTTTTTTTAAAACCACTTGACTT
66 ATATTCACAGACTCGATTTAAGAAAACAAGGTCTCGATACCTCATTTTTCAAAACCACTTGACTT
* *
92807854 TCGGTATGCACCACTTGTACCT
131 TCAGTACGCACCACTTGTACCT
* * * *
92807876 TCACCAAAATTTTTGGACCAAACTTCAATTCACCTATATAAAAGCTTCATAAATATTTAATAAAA
1 TCACCAAAACTTTTAGACCAAACTTCAATTCACCTATATAAAAACTCCATAAATATTTAATAAAA
92807941 ATATTCACAGACTCGATTTACA-AAAACAAGGTC-CTGATACCTCATTTTTCAAAACCACTTGAC
66 ATATTCACAGACTCGATTTA-AGAAAACAAGGTCTC-GATACCTCATTTTTCAAAACCACTTGAC
92808004 TTTCAGTACGCACCACTTGTACCT
129 TTTCAGTACGCACCACTTGTACCT
92808028 T
1 T
92808029 GACTAACTTG
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
151 1 0.01
152 137 0.99
153 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.32
Consensus pattern (152 bp):
TCACCAAAACTTTTAGACCAAACTTCAATTCACCTATATAAAAACTCCATAAATATTTAATAAAA
ATATTCACAGACTCGATTTAAGAAAACAAGGTCTCGATACCTCATTTTTCAAAACCACTTGACTT
TCAGTACGCACCACTTGTACCT
Found at i:92808512 original size:16 final size:18
Alignment explanation
Indices: 92808476--92808512 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
92808466 ATAATGATAG
*
92808476 TTCATTCTAGGTAATTAT
1 TTCATTCTAGCTAATTAT
92808494 TTCA-TCTAGCTAA-TAT
1 TTCATTCTAGCTAATTAT
92808510 TTC
1 TTC
92808513 TTGTAATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 8 0.44
18 4 0.22
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (18 bp):
TTCATTCTAGCTAATTAT
Found at i:92818293 original size:22 final size:22
Alignment explanation
Indices: 92818265--92818311 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
92818255 TTCTTTGAGA
92818265 TAAGCATCACTTAAAAAAACTT
1 TAAGCATCACTTAAAAAAACTT
92818287 TAAGCATCACTTAAAAAAACTT
1 TAAGCATCACTTAAAAAAACTT
92818309 TAA
1 TAA
92818312 ACTAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.28
Consensus pattern (22 bp):
TAAGCATCACTTAAAAAAACTT
Found at i:92820154 original size:36 final size:36
Alignment explanation
Indices: 92820107--92820179 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
92820097 AAATACTGTT
* * *
92820107 ACATGGCATGAATAACATACCCACATATTTACTTTC
1 ACATGGCATGAACAACACACCCACATATTCACTTTC
* *
92820143 ACATGGCATGAACAATACACCCTCATATTCACTTTC
1 ACATGGCATGAACAACACACCCACATATTCACTTTC
92820179 A
1 A
92820180 TATCAATCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (36 bp):
ACATGGCATGAACAACACACCCACATATTCACTTTC
Found at i:92824458 original size:27 final size:28
Alignment explanation
Indices: 92824428--92824497 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
92824418 ATATTAAGTC
* *
92824428 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
92824455 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
92824483 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92824498 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:92827611 original size:48 final size:48
Alignment explanation
Indices: 92827541--92827863 Score: 254
Period size: 48 Copynumber: 6.8 Consensus size: 48
92827531 AGGGTGAATT
* * * **
92827541 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAG
* * * * * *
92827589 GCTGATTCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAG
* * * * * **
92827637 ACCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTCACGGT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA-TGTCAAG
* * * * *
92827685 GCTGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAG
* * *** **
92827733 GCCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCAAAACATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAG
* * * * * * **
92827780 GTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAG
* * *
92827828 GCCGACGTCATGTCCCAGACATGGTCCTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
92827864 ATACATATTA
Statistics
Matches: 216, Mismatches: 56, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
47 40 0.19
48 175 0.81
49 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAG
Found at i:92827805 original size:95 final size:96
Alignment explanation
Indices: 92827541--92827863 Score: 321
Period size: 96 Copynumber: 3.4 Consensus size: 96
92827531 AGGGTGAATT
* * * * * * * **
92827541 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCTGATTCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGATGTGGCTGACGCCATGTCCCA
* * *
92827606 GACATGGTCTTACACTAGCTCTCTTCTCAAT
66 GACATGGTCTTACACTAGCTCTCATATCAAC
* * * *
92827637 ACCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTCACGGTGTGGCTGACGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGATGTGGCTGACGCCATGTCCCA
* *
92827702 GACATGGTCTTACACTAGCGCACATATCAAC
66 GACATGGTCTTACACTAGCTCTCATATCAAC
* * * *
92827733 GCCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCAAAAC-AT-TGTC-GATGCCATGTT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC---ACGATGTGGCTGACGCCATGTC
* * ***
92827794 CCAAACATGGTCTTACACTGGCTCTCATATCGTG
63 CCAGACATGGTCTTACACTAGCTCTCATATCAAC
* * *
92827828 GCCGACGTCATGTCCCAGACATGGTCCTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
92827864 ATACATATTA
Statistics
Matches: 187, Mismatches: 36, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
95 71 0.38
96 113 0.60
97 1 0.01
98 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGATGTGGCTGACGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATATCAAC
Found at i:92827808 original size:143 final size:144
Alignment explanation
Indices: 92827541--92827863 Score: 362
Period size: 143 Copynumber: 2.2 Consensus size: 144
92827531 AGGGTGAATT
* * * * * * ** * * *
92827541 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCTGATTCCATGTCCCA
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCA
**** *
92827606 GACATGGTCTTACACTAGCTCTCTTCTCAATACCAATGCCATGTCCCAGACATGATCTTACACTA
66 GACATGGTCTTACACTAGCTCTCAAAACAATACCAATGCCATGTCCCAAACATGATCTTACACTA
*
92827671 GCTCTCACGGT-GTG
131 GCTCTCA-GATCGTG
*
92827685 GCTGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGT-CCA
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCA
* * ** * * * *
92827749 GACATGGTCTTACACTGGCTCTCAAAACATTGTCGATGCCATGTTCCAAACATGGTCTTACACTG
66 GACATGGTCTTACACTAGCTCTCAAAACAATACCAATGCCATGTCCCAAACATGATCTTACACTA
*
92827814 GCTCTCATATCGTG
131 GCTCTCAGATCGTG
* *
92827828 GCCGACGTCATGTCCCAGACATGGTCCTACACTAGC
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGC
92827864 ATACATATTA
Statistics
Matches: 148, Mismatches: 30, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
142 1 0.01
143 98 0.66
144 49 0.33
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (144 bp):
GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCAAAACAATACCAATGCCATGTCCCAAACATGATCTTACACTA
GCTCTCAGATCGTG
Found at i:92828374 original size:30 final size:26
Alignment explanation
Indices: 92828303--92828360 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
92828293 TTTATACTAG
92828303 AAACAGCCCACAATTCCCATTATTTC
1 AAACAGCCCACAATTCCCATTATTTC
92828329 AAACAGCCCACAATTCCCATTATTTC
1 AAACAGCCCACAATTCCCATTATTTC
*
92828355 ACACAG
1 AAACAG
92828361 TTACCACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.34, G:0.05, T:0.24
Consensus pattern (26 bp):
AAACAGCCCACAATTCCCATTATTTC
Found at i:92834722 original size:43 final size:42
Alignment explanation
Indices: 92834659--92834779 Score: 172
Period size: 43 Copynumber: 2.9 Consensus size: 42
92834649 GTACAGTACT
*
92834659 AATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATC
1 AATGCCATATCCTAGATATGGTCTTACACGTAATCTCGTATC
* *
92834701 AATGCCAATAGCCTAGCTATGGTCTTACACG-AAGTCTCGTATC
1 AATGCC-ATATCCTAGATATGGTCTTACACGTAA-TCTCGTATC
* *
92834744 GATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 AATGCCATATCCTAGATATGGTCTTACACGTAATCT
92834780 TAGTAACCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 32 0.46
43 37 0.54
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
AATGCCATATCCTAGATATGGTCTTACACGTAATCTCGTATC
Found at i:92838145 original size:12 final size:12
Alignment explanation
Indices: 92838128--92838157 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
92838118 AGCCACACGC
92838128 CCATGTGCCAGG
1 CCATGTGCCAGG
*
92838140 CCATGTGCTAGG
1 CCATGTGCCAGG
92838152 CCATGT
1 CCATGT
92838158 AACTTCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (12 bp):
CCATGTGCCAGG
Found at i:92838499 original size:30 final size:30
Alignment explanation
Indices: 92838441--92838499 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
92838431 ATTTTTAAGC
**
92838441 CTAAGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAAGGGTAAAATGGTCATTTTACCAAAGT
*
92838471 CTAAGGGTAATATGGTCATTTTACCAAAG
1 CTAAGGGTAAAATGGTCATTTTACCAAAG
92838500 ATGTGATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (30 bp):
CTAAGGGTAAAATGGTCATTTTACCAAAGT
Found at i:92838907 original size:47 final size:46
Alignment explanation
Indices: 92838839--92839096 Score: 222
Period size: 47 Copynumber: 5.5 Consensus size: 46
92838829 ATTGTAAGCT
* * *
92838839 AGTGTAAGACATGTCTAGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-CATGAGAGCC
* * * *
92838885 AGTGTAAGACCATGTCTGGGACATGGCATTGG-CATCGACACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGACATGAGAGCC
*
92838933 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT-A-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC--GACATGAGAGCC
* * * *
92838979 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGACATGAGAGCC
* * * * *
92839025 AATGTAAGACTATGTCTGGGACATGGCATC-GACATGAGAT-ATGAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCACGACATGA-GAGCC
*
92839072 AGTGTAAGACCGTGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
92839097 GCATTGGCAC
Statistics
Matches: 174, Mismatches: 25, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
44 4 0.02
45 1 0.01
46 64 0.37
47 73 0.42
48 31 0.18
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGACATGAGAGCC
Found at i:92839088 original size:140 final size:140
Alignment explanation
Indices: 92838833--92839096 Score: 345
Period size: 140 Copynumber: 1.9 Consensus size: 140
92838823 TGGGTTATTG
* * *
92838833 TAAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCAT
1 TAAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCACATGATGAGAGCCAATGTAAGACCAT
* * *
92838898 GTCTGGGACATGGCATTGGCATCGACACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGG
66 GTCTGGGACATGGCATCGACATCGACACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGG
92838963 CCTCGAGACA
131 CCTCGAGACA
* * * * * *
92838973 TAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAATGTAAGACTA
1 TAAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-ATGATGAGAGCCAATGTAAGACCA
* * *
92839037 TGTCTGGGACATGGCATCGACAT-GAGA-TATGAGCTAGTGTAAGACCGTGTCTGGGACATG
65 TGTCTGGGACATGGCATCGACATCGACACGA-GAGCTAGTGTAAGA-CATGTCTGGGACATG
92839097 GCATTGGCAC
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 16 0.15
140 88 0.83
141 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (140 bp):
TAAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCACATGATGAGAGCCAATGTAAGACCAT
GTCTGGGACATGGCATCGACATCGACACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGG
CCTCGAGACA
Found at i:92839097 original size:47 final size:48
Alignment explanation
Indices: 92838880--92839105 Score: 227
Period size: 47 Copynumber: 4.8 Consensus size: 48
92838870 CACATTATGA
* * * *
92838880 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGACACGA-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-TAT
* * *
92838928 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAT
* *
92838974 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGATGAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGAT-AT
* * *
92839021 -AG-TCAATGTAAGACTATGTCTGGGACATGGCATCGACAT-GAGATAT
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAT
* *
92839067 GAGCTAGTGTAAGACCGTGTCTGGGACATGGCATTGGCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
92839106 CCTTACCCAC
Statistics
Matches: 150, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.01
46 62 0.41
47 65 0.43
48 20 0.13
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAT
Found at i:92840080 original size:28 final size:28
Alignment explanation
Indices: 92840048--92840112 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
92840038 CACATGGGAT
92840048 AGGACACGGGCATGTCATGGCCGTGTGA
1 AGGACACGGGCATGTCATGGCCGTGTGA
92840076 AGGACACGGGCATGTCATGGCCGTGTGA
1 AGGACACGGGCATGTCATGGCCGTGTGA
92840104 AGGACACGG
1 AGGACACGG
92840113 TCCAAGGACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.40, T:0.15
Consensus pattern (28 bp):
AGGACACGGGCATGTCATGGCCGTGTGA
Found at i:92840131 original size:30 final size:28
Alignment explanation
Indices: 92840048--92840132 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
92840038 CACATGGGAT
* * *
92840048 AGGACACGGGCATGTCATGGCCGTGTGA
1 AGGACACGGCCAGGACATGGCCGTGTGA
* * *
92840076 AGGACACGGGCATGTCATGGCCGTGTGA
1 AGGACACGGCCAGGACATGGCCGTGTGA
*
92840104 AGGACACGGTCCAAGGACATGGGCGTGTG
1 AGGACACGG-CC-AGGACATGGCCGTGTG
92840133 CCAGGCCGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 37 0.73
29 1 0.02
30 13 0.25
ACGTcount: A:0.22, C:0.21, G:0.40, T:0.16
Consensus pattern (28 bp):
AGGACACGGCCAGGACATGGCCGTGTGA
Found at i:92847536 original size:17 final size:16
Alignment explanation
Indices: 92847514--92847545 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
92847504 TTGGTAATCC
92847514 AACAAAATAAACATATA
1 AACAAAATAAA-ATATA
92847531 AACAAAATAAAATAT
1 AACAAAATAAAATAT
92847546 TTTCTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (16 bp):
AACAAAATAAAATATA
Found at i:92854657 original size:342 final size:342
Alignment explanation
Indices: 92854024--92854709 Score: 1025
Period size: 342 Copynumber: 2.0 Consensus size: 342
92854014 TAGAAGCTAA
92854024 TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
1 TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
* * *
92854089 ACCACTCAGACAATGCAGATCAGGCAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGT
66 ACCACTCACACAATGCAGATCAGACAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGC
* * * *
92854154 CAAGTGAGTCAACAAAATGAAAATATTGTTGTGAAAAGTGATAATGCTAGTGGAGGAAACAATAG
131 CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGAGAAAACAACAG
* ** *
92854219 GACCACATGTGATGGTCCAGAAAGTCATGATGCAACTGAAAAAGCTGGTGTGATTGTCTCAAAAT
196 GACCACATGTGATGGTCCAGAAAATCATGATGCAACTGAAAAAGCTCCTATGATTGTCTCAAAAT
* * *
92854284 TCAACCGAAGATGTGAACCTTCTAGTGCAAAAACCATACTGCCTAAAAGGCAAACAAAACATGTA
261 TCAACCGAAGAAGTGAACCTTCTAGTGCAAAAAACATACTGCCTAAAAGGCAAACAAAACATGCA
*
92854349 TTGAACTCAAGAAATAG
326 TTAAACTCAAGAAATAG
* * *
92854366 TGGTTTTGGTGATTCAAATAGAGATGCATGCTTTGAAGGAAAAGGTGGCTGGAGAAGCACACATT
1 TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
** * * * * *
92854431 ACTGCTCACATAATGCAGATCAGACATTTGGACATCATTTTAGCAGATTTAATAATGTACGATGC
66 ACCACTCACACAATGCAGATCAGACAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGC
* *
92854496 CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGATAAAAGAACAG
131 CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGAGAAAACAACAG
***
92854561 GACTGTATGTGATGGTCCAGAAAATCATGATGCAACT-AAAACAGCTCCTATGATTGTCTCAAAA
196 GACCACATGTGATGGTCCAGAAAATCATGATGCAACTGAAAA-AGCTCCTATGATTGTCTCAAAA
* * * * *
92854625 TTCAACTGCATAAGTGAACCTTCTCA-TGCAAAAAACATGCTGCCTAAAAGGCAAACACAACATG
260 TTCAACCGAAGAAGTGAACCTTCT-AGTGCAAAAAACATACTGCCTAAAAGGCAAACAAAACATG
92854689 CATTAAACTCAAGAAATAG
324 CATTAAACTCAAGAAATAG
92854708 TG
1 TG
92854710 ATGAAAGTGC
Statistics
Matches: 307, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
341 4 0.01
342 302 0.98
343 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (342 bp):
TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
ACCACTCACACAATGCAGATCAGACAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGC
CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGAGAAAACAACAG
GACCACATGTGATGGTCCAGAAAATCATGATGCAACTGAAAAAGCTCCTATGATTGTCTCAAAAT
TCAACCGAAGAAGTGAACCTTCTAGTGCAAAAAACATACTGCCTAAAAGGCAAACAAAACATGCA
TTAAACTCAAGAAATAG
Found at i:92859924 original size:28 final size:28
Alignment explanation
Indices: 92859884--92859943 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
92859874 TATAAAAATG
*
92859884 AAAAAAAATAGAATTTAT-AAAAATTATA
1 AAAAAAAACAGAATTT-TCAAAAATTATA
*
92859912 AAAAAAAACAGAATTTTCAAGAATTATA
1 AAAAAAAACAGAATTTTCAAAAATTATA
92859940 AAAA
1 AAAA
92859944 TATTACCCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (28 bp):
AAAAAAAACAGAATTTTCAAAAATTATA
Found at i:92863288 original size:14 final size:16
Alignment explanation
Indices: 92863265--92863297 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
92863255 TCTCGTAAAC
92863265 TTTAAGAAG-TAAAAT
1 TTTAAGAAGTTAAAAT
92863280 TTTAA-AAGTTAAAAT
1 TTTAAGAAGTTAAAAT
92863295 TTT
1 TTT
92863298 TCTAACTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (16 bp):
TTTAAGAAGTTAAAAT
Found at i:92864156 original size:69 final size:68
Alignment explanation
Indices: 92864061--92864247 Score: 187
Period size: 69 Copynumber: 2.7 Consensus size: 68
92864051 GCCTCGGTGG
* * * * ** *
92864061 ACTCTAATGGTTGCCATAGTCGAGCTATGGACTTACACTTTATAATCCATGTGTTTACTGTC-CC
1 ACTCTATTAGTTGCCATAGTTGAGCTATGGTCTTACA-TTTATAATCCACATGTTTACTATCTCC
*
92864125 ATCAA
65 A-AAA
* * * *
92864130 ACTCTATTAGTTGTCATAGTTGAGCTATAGTCTTACATCTTATAATCCCCATGTTTACTATCTCG
1 ACTCTATTAGTTGCCATAGTTGAGCTATGGTCTTACAT-TTATAATCCACATGTTTACTATCTCC
92864195 AAAA
65 AAAA
** *
92864199 ACTCTATTAGTTGCCATAACTGAGCTATGGTCTTCCATTTTATACATCC
1 ACTCTATTAGTTGCCATAGTTGAGCTATGGTCTTACA-TTTATA-ATCC
92864248 TTTGAGGTGT
Statistics
Matches: 97, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
68 1 0.01
69 89 0.92
70 7 0.07
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (68 bp):
ACTCTATTAGTTGCCATAGTTGAGCTATGGTCTTACATTTATAATCCACATGTTTACTATCTCCA
AAA
Found at i:92872484 original size:69 final size:69
Alignment explanation
Indices: 92872385--92872655 Score: 524
Period size: 69 Copynumber: 3.9 Consensus size: 69
92872375 CTTTTGTCTA
*
92872385 CAATTTGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
1 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
92872450 CACC
66 CACC
92872454 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
1 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
92872519 CACC
66 CACC
92872523 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
1 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
92872588 CACC
66 CACC
*
92872592 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGATCGAAAAATAATGACCTTTA
1 CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTA
92872656 ACTACCAAGG
Statistics
Matches: 200, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 200 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.23
Consensus pattern (69 bp):
CAATATGACATCAAACTCATCGAATGGTAACAGCATCAAATCGACCGAAAAATAATGACCTTTAT
CACC
Found at i:92880248 original size:79 final size:82
Alignment explanation
Indices: 92880137--92880321 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
92880127 GCTACTCGTT
* *
92880137 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
92880200 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
92880217 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
92880280 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
92880297 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92880322 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:92880321 original size:40 final size:40
Alignment explanation
Indices: 92880118--92880321 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
92880108 CGGAATTTAA
** *
92880118 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92880158 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92880198 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92880237 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
92880277 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92880317 CCGGA
1 CCGGA
92880322 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92892510 original size:33 final size:34
Alignment explanation
Indices: 92892468--92892532 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
92892458 AGTTCTACCT
*
92892468 AGCCCATGG-TCTAAATC-TTGCTATGTGATGGAA
1 AGCCCATGGTTC-AAATCTTTGCTATGTCATGGAA
92892501 AGCCCATGGTTCAAATCTTTGCTATGTCATGG
1 AGCCCATGGTTCAAATCTTTGCTATGTCATGG
92892533 GGATGATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (34 bp):
AGCCCATGGTTCAAATCTTTGCTATGTCATGGAA
Found at i:92893611 original size:79 final size:81
Alignment explanation
Indices: 92893475--92893659 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
92893465 TTGAATGATG
* *
92893475 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
92893539 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
92893554 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
92893616 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
92893634 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92893660 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:92893673 original size:40 final size:40
Alignment explanation
Indices: 92893476--92893659 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
92893466 TGAATGATGT
* * * *
92893476 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
92893516 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
92893556 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
92893594 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92893635 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92893660 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92893681 original size:79 final size:79
Alignment explanation
Indices: 92893528--92893692 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
92893518 GGACTAAGAT
* * **
92893528 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
92893593 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
92893607 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
92893670 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
92893686 CCGAAGG
1 CCGAAGG
92893693 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:92898679 original size:49 final size:49
Alignment explanation
Indices: 92898617--92898857 Score: 302
Period size: 49 Copynumber: 4.9 Consensus size: 49
92898607 CAAAGCTATT
* * * *
92898617 TGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
* * **
92898666 CGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATC
* * *
92898716 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC
* * * * *
92898767 AGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
*
92898816 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
92898858 TCACAACAGA
Statistics
Matches: 162, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 77 0.48
50 48 0.30
51 37 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
Found at i:92898848 original size:100 final size:99
Alignment explanation
Indices: 92898617--92898857 Score: 322
Period size: 100 Copynumber: 2.4 Consensus size: 99
92898607 CAAAGCTATT
* * * * * * *
92898617 TGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGC
* *
92898682 CTGCACTTAGTACTACACACGTGACCTAACCATC
66 CTACACTTAGTACTACACACGCGACCTAACCATC
* * *
92898716 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTA
* **
92898781 GCCTACACTTAGTACTACACATGCGACC-AATTATC
64 GCCTACACTTAGTACTACACACGCGACCTAACCATC
92898816 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
92898858 TCACAACAGA
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 35 0.28
100 47 0.38
101 41 0.33
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGC
CTACACTTAGTACTACACACGCGACCTAACCATC
Found at i:92908096 original size:53 final size:53
Alignment explanation
Indices: 92908011--92908155 Score: 155
Period size: 53 Copynumber: 2.7 Consensus size: 53
92908001 TTGCTTTTTA
* * * * *
92908011 AACTTACCATTGCCATGTCTTGACATGTTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
92908064 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * * *
92908118 CAGTTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATG
92908156 ATTTTATTTC
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 45 0.59
54 1 0.01
55 30 0.39
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:92910517 original size:29 final size:29
Alignment explanation
Indices: 92910475--92910625 Score: 180
Period size: 29 Copynumber: 5.2 Consensus size: 29
92910465 CGTATCGACA
* *
92910475 ACCATCGAATATGAAAAAGGATGGTGGCG
1 ACCATCGAATATGAAAAGGGATGGTGTCG
92910504 ACCATCGAATATGAAAAGGGATGGCT-TCG
1 ACCATCGAATATGAAAAGGGATGG-TGTCG
* * * *
92910533 ACCATCAAATATGAAAAGAGATAGTGACG
1 ACCATCGAATATGAAAAGGGATGGTGTCG
*
92910562 ACCATCGAATATG-AAAGGGAATGGTTTCG
1 ACCATCGAATATGAAAAGGG-ATGGTGTCG
* * *
92910591 ATCATCGAATATGAAAAGGGATAGTTTCG
1 ACCATCGAATATGAAAAGGGATGGTGTCG
92910620 ACCATC
1 ACCATC
92910626 ATTTAGCACA
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
28 6 0.06
29 91 0.88
30 7 0.07
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.21
Consensus pattern (29 bp):
ACCATCGAATATGAAAAGGGATGGTGTCG
Found at i:92917536 original size:93 final size:93
Alignment explanation
Indices: 92917377--92917547 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
92917367 GGATAGTTGA
* * * * *
92917377 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAACGCCCGAACTCATTGAGT
92917442 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
92917470 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAACGCCCGAACTCATTGAGT
92917535 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
92917548 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:92917550 original size:46 final size:45
Alignment explanation
Indices: 92917381--92917554 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
92917371 AGTTGAGCAT
* * *
92917381 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACGC
* * *
92917427 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAAC---GC
*
92917472 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACGC
* *
92917520 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTAGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
92917555 GGCGGGTTAC
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 58 0.55
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAACGC
Found at i:92924100 original size:16 final size:16
Alignment explanation
Indices: 92924052--92924094 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
92924042 GTAGATCGGC
* **
92924052 AAAAGCCGAAATGCTG
1 AAAAGCCAAAATATTG
*
92924068 AAAAGCTAAAATATTG
1 AAAAGCCAAAATATTG
92924084 AAAAGCCAAAA
1 AAAAGCCAAAA
92924095 GTTTGACTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.14, G:0.16, T:0.14
Consensus pattern (16 bp):
AAAAGCCAAAATATTG
Found at i:92924363 original size:28 final size:28
Alignment explanation
Indices: 92924299--92924387 Score: 117
Period size: 28 Copynumber: 3.1 Consensus size: 28
92924289 TGAGCATGAC
* *
92924299 TATACATGTGAATTGGGCCTGATGGGCCA
1 TATAAATGTG-ATTGGGCCTAATGGGCCA
*
92924328 TATAAATGTGATTTGGGCTTAAT-GGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
*
92924356 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAATGGGCCA
92924384 TATA
1 TATA
92924388 CAGGTATGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 9 0.17
28 26 0.49
29 18 0.34
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Found at i:92926286 original size:40 final size:40
Alignment explanation
Indices: 92926234--92926545 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
92926224 ATAACCACAA
* * * *
92926234 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
92926274 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
92926314 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
92926354 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92926394 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
92926436 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
92926476 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92926516 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
92926546 GTATTCAAAT
Statistics
Matches: 259, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
40 219 0.85
42 40 0.15
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:92926495 original size:122 final size:121
Alignment explanation
Indices: 92926234--92926553 Score: 534
Period size: 122 Copynumber: 2.6 Consensus size: 121
92926224 ATAACCACAA
* * * *
92926234 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
92926299 CGGATATA-TCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CGGATATATTCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92926354 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
92926419 CGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATAT-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
92926476 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
92926541 CGGATGTATTCAA
66 CGGATATATTCAA
92926554 ATGCTCATGC
Statistics
Matches: 188, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
120 69 0.37
121 4 0.02
122 115 0.61
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (121 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATTCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:92932493 original size:37 final size:37
Alignment explanation
Indices: 92932443--92932521 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
92932433 TTATTACGAA
* * *
92932443 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
92932480 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
92932517 GTCTT
1 GTCTT
92932522 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:92932766 original size:49 final size:47
Alignment explanation
Indices: 92932639--92933172 Score: 829
Period size: 47 Copynumber: 11.2 Consensus size: 47
92932629 CCCTTCGGGA
* * * * * *
92932639 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
92932686 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92932733 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92932782 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92932829 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92932874 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
92932923 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92932970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92933017 CCTATTCACATATATTACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
92933066 CTTATCACATATATACACACTTTCACATTCATCACATCGGGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATC--GGCCATTAGGC
92933117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92933164 CTTATCACA
1 CTTATCACA
92933173 ATTTAGAATT
Statistics
Matches: 452, Mismatches: 23, Indels: 24
0.91 0.05 0.05
Matches are distributed among these distances:
45 44 0.10
47 196 0.43
48 18 0.04
49 170 0.38
51 24 0.05
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92932801 original size:96 final size:94
Alignment explanation
Indices: 92932639--92933172 Score: 829
Period size: 96 Copynumber: 5.6 Consensus size: 94
92932629 CCCTTCGGGA
* * * * * * * *
92932639 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
92932704 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
92932733 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
92932798 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
92932829 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--AC
92932892 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
92932923 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
92932988 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
92933017 CCTATTCACATATATTACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
1 CTTA-TCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--
92933082 ACACTTTCACATTCATCACATCGGGGCCATTAGGC
62 ACACTTTCACATTCATCACATC--GGCCATTAGGC
92933117 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
92933173 ATTTAGAATT
Statistics
Matches: 407, Mismatches: 21, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
92 47 0.12
94 85 0.21
95 9 0.02
96 179 0.44
98 64 0.16
99 9 0.02
100 14 0.03
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:92932816 original size:23 final size:23
Alignment explanation
Indices: 92932789--92932861 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
92932779 GGCCTTATCG
92932789 CACATATACACTTTCACATTCAT
1 CACATATACACTTTCACATTCAT
*** * *
92932812 CACATCGGC-CATT-AGGCCTT-AT
1 CACATATACACTTTCA--CATTCAT
92932834 CACATATACACTTTCACATTCAT
1 CACATATACACTTTCACATTCAT
92932857 CACAT
1 CACAT
92932862 CGGCCATTAA
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 14 0.40
23 19 0.54
24 1 0.03
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (23 bp):
CACATATACACTTTCACATTCAT
Found at i:92932883 original size:22 final size:22
Alignment explanation
Indices: 92932810--92932883 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
92932800 TTTCACATTC
*
92932810 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAAGCCTT
*** * * *
92932832 ATCACATATACACTTTCA-CATT
1 ATCACATCGGC-CATTAAGCCTT
92932854 CATCACATCGGCCATTAAGCCTT
1 -ATCACATCGGCCATTAAGCCTT
92932877 ATCACAT
1 ATCACAT
92932884 ATATACACAC
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAAGCCTT
Found at i:92936037 original size:27 final size:27
Alignment explanation
Indices: 92936004--92936273 Score: 353
Period size: 27 Copynumber: 10.0 Consensus size: 27
92935994 ATAAAGTACT
*
92936004 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
92936031 GACATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
92936058 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
92936085 GAAATACCTCTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
92936112 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
92936139 GAAACACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
92936166 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
92936193 AAAATACCCCTATAGGGTGGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
92936220 AAAATACCCCTGTAGGGTGGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
92936247 GAGATACCCTTGT-GAGGTAAAATTACC
1 GAAATACCCCTGTAG-GGTAGAATTACC
92936274 ATTTTGCCCC
Statistics
Matches: 214, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 213 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:92936693 original size:12 final size:12
Alignment explanation
Indices: 92936676--92936763 Score: 56
Period size: 12 Copynumber: 7.2 Consensus size: 12
92936666 TTGCATTCCC
*
92936676 ATTCTGATTTTG
1 ATTCTGATTCTG
92936688 ATTCTG-TTACCTG
1 ATTCTGATT--CTG
*
92936701 ATACTGATTCTG
1 ATTCTGATTCTG
* *
92936713 ACTCTGATTTTG
1 ATTCTGATTCTG
* *
92936725 -TCACCTGATTCTA
1 AT--TCTGATTCTG
92936738 ATTCTGATTCTG
1 ATTCTGATTCTG
92936750 ATTCT-AGTTCTG
1 ATTCTGA-TTCTG
92936762 AT
1 AT
92936764 AATGTTTCTT
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
11 3 0.05
12 38 0.66
13 14 0.24
14 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (12 bp):
ATTCTGATTCTG
Found at i:92936721 original size:31 final size:31
Alignment explanation
Indices: 92936676--92936754 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
92936666 TTGCATTCCC
* * *
92936676 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* * *
92936707 ATTCTGACTCTGATTTTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
92936738 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
92936755 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:92936752 original size:18 final size:18
Alignment explanation
Indices: 92936729--92936763 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92936719 ATTTTGTCAC
92936729 CTGATTCTAATTCTGATT
1 CTGATTCTAATTCTGATT
*
92936747 CTGATTCTAGTTCTGAT
1 CTGATTCTAATTCTGAT
92936764 AATGTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (18 bp):
CTGATTCTAATTCTGATT
Found at i:92938723 original size:28 final size:28
Alignment explanation
Indices: 92938641--92938730 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 28
92938631 TGAGCATGAC
92938641 TATAAATGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
* *
92938670 TATAAATGTAATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
92938699 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
92938727 TATA
1 TATA
92938731 CAGGTATGTG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 21 0.38
29 34 0.62
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:92940342 original size:46 final size:46
Alignment explanation
Indices: 92940286--92940458 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
92940276 TGGTTGAGCA
92940286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
92940332 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
92940377 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
92940425 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92940459 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.55
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:92940442 original size:93 final size:93
Alignment explanation
Indices: 92940283--92940453 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
92940273 GGATGGTTGA
*
92940283 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
*
92940348 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * *
92940376 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
92940441 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
92940454 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:92944153 original size:15 final size:15
Alignment explanation
Indices: 92944133--92944161 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92944123 TGAAATTATG
92944133 TTTGAATATGTTTAA
1 TTTGAATATGTTTAA
92944148 TTTGAATATGTTTA
1 TTTGAATATGTTTA
92944162 GATCAAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (15 bp):
TTTGAATATGTTTAA
Found at i:92944523 original size:43 final size:42
Alignment explanation
Indices: 92944475--92944629 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
92944465 TGTGTTCTCA
92944475 TGTAAGACCACGTCTGGGACGTTGGCATCAATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATGTGATTACG
* * * * *
92944518 TGTAAGACCATGTCTGGGACATCGGTATCATATTTGATT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATGTGATTACG
* * * * *
92944559 TGTAAGACC-CTGTCTAGGACAG-AGGCAACGATATGAGA-TAGCA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATC-ATATGTGATTA-CG
92944602 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
92944630 TGTACGATAT
Statistics
Matches: 88, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
41 24 0.27
42 16 0.18
43 47 0.53
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATGTGATTACG
Found at i:92959990 original size:42 final size:42
Alignment explanation
Indices: 92959921--92960005 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
92959911 GGGTCACATA
* *
92959921 GTCGTGTGTCTCACATAGCTGAAAGACACGCCCGTGTCTCAG
1 GTCGTGTGCCTCACACAGCTGAAAGACACGCCCGTGTCTCAG
* * *
92959963 GTCGTGTGCCTCACACGGTTGAGAGACACGCCCGTGTCTCAG
1 GTCGTGTGCCTCACACAGCTGAAAGACACGCCCGTGTCTCAG
92960005 G
1 G
92960006 CCGCGTAACC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (42 bp):
GTCGTGTGCCTCACACAGCTGAAAGACACGCCCGTGTCTCAG
Found at i:92970771 original size:22 final size:23
Alignment explanation
Indices: 92970724--92970773 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
92970714 AACATAATCA
*
92970724 AAGTGCCAAAATAAATTGCACCG
1 AAGTGCCAAAATAAATCGCACCG
* *
92970747 AAGTGCCATAAT-AATCGCACTG
1 AAGTGCCAAAATAAATCGCACCG
92970769 AAGTG
1 AAGTG
92970774 TGAGTATGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (23 bp):
AAGTGCCAAAATAAATCGCACCG
Found at i:92971773 original size:137 final size:137
Alignment explanation
Indices: 92971527--92971799 Score: 492
Period size: 137 Copynumber: 2.0 Consensus size: 137
92971517 TGATTGTGTC
* *
92971527 GTTAGCTATGTATGGTAATCCATTTAAAAAATAGTATTAGTCTACATTCAACAAAGGTATAACCA
1 GTTAGCTATGTATGATAATCCATTTAAAAAATAGTATTAGTCTACATTAAACAAAGGTATAACCA
*
92971592 ATAACCAAGTAAAATTGCATTCTTTACAACTAAGTCTCTTTTTAGCCATAATATCTAAAATGCTT
66 ACAACCAAGTAAAATTGCATTCTTTACAACTAAGTCTCTTTTTAGCCATAATATCTAAAATGCTT
92971657 GTATCTA
131 GTATCTA
*
92971664 GTTAGCTATGTATGATAATCCATTTAAAAAATAGTATTAGTCTACATTAAATAAAGGTATAACCA
1 GTTAGCTATGTATGATAATCCATTTAAAAAATAGTATTAGTCTACATTAAACAAAGGTATAACCA
*
92971729 ACAACCAAGTAAAATTGCATTCTTTACAACTAAGTCTCTTTTTAGCCTTAATATCTAAAATGCTT
66 ACAACCAAGTAAAATTGCATTCTTTACAACTAAGTCTCTTTTTAGCCATAATATCTAAAATGCTT
*
92971794 TTATCT
131 GTATCT
92971800 CATTATTTAG
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 130 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (137 bp):
GTTAGCTATGTATGATAATCCATTTAAAAAATAGTATTAGTCTACATTAAACAAAGGTATAACCA
ACAACCAAGTAAAATTGCATTCTTTACAACTAAGTCTCTTTTTAGCCATAATATCTAAAATGCTT
GTATCTA
Found at i:92973255 original size:46 final size:46
Alignment explanation
Indices: 92973205--92974113 Score: 1671
Period size: 46 Copynumber: 19.7 Consensus size: 46
92973195 TGGTTGAGCA
92973205 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973251 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973297 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973343 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973389 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973435 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973481 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973573 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973665 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973711 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973757 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973803 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973849 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973895 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92973941 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
92973987 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
92974032 CATCCGAACTCGTTGAGTTGAGTCCGATTTCATTTATGGATGTAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
92974080 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92974114 GGGGCGGGTT
Statistics
Matches: 844, Mismatches: 12, Indels: 14
0.97 0.01 0.02
Matches are distributed among these distances:
43 6 0.01
45 4 0.00
46 795 0.94
47 28 0.03
48 4 0.00
50 7 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:92974375 original size:19 final size:20
Alignment explanation
Indices: 92974338--92974375 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92974328 ATAAGGTGGT
92974338 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
92974358 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
92974376 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:92981072 original size:16 final size:16
Alignment explanation
Indices: 92981051--92981104 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
92981041 AAGCCTAGGG
92981051 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
* ***
92981067 GCAAAAGT-TTA-GGG
1 GCAAAAGTGTAATTAT
92981081 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
92981097 GCAAAAGT
1 GCAAAAGT
92981105 TTAGGGGCAA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 8 0.29
15 4 0.14
16 16 0.57
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:92981086 original size:14 final size:14
Alignment explanation
Indices: 92981067--92981118 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
92981057 GTGTAATTAT
92981067 GCAAAAGTTTAGGG
1 GCAAAAGTTTAGGG
* ***
92981081 GCAAAAGTGTAATTAT
1 GCAAAAGT-TTA-GGG
92981097 GCAAAAGTTTAGGG
1 GCAAAAGTTTAGGG
92981111 GCAAAAGT
1 GCAAAAGT
92981119 GTAATTTTTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 16 0.57
15 4 0.14
16 8 0.29
ACGTcount: A:0.40, C:0.08, G:0.29, T:0.23
Consensus pattern (14 bp):
GCAAAAGTTTAGGG
Found at i:92981135 original size:30 final size:30
Alignment explanation
Indices: 92981046--92981124 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
92981036 TTCCCAAGCC
92981046 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
92981076 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
92981106 TAGGGGCAAAAGTGTAATT
1 TAGGGGCAAAAGTGTAATT
92981125 TTTTTAAAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:92981411 original size:21 final size:21
Alignment explanation
Indices: 92981387--92981455 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
92981377 TTTGTGGTAA
92981387 ATGTTGAGTAATATGCAAATT
1 ATGTTGAGTAATATGCAAATT
* * * *
92981408 ATGTTTACTACT-TGATAAATAT
1 ATGTTGAGTAATATG-CAAAT-T
92981430 AAT-TTGAGTAATATGCAAATT
1 -ATGTTGAGTAATATGCAAATT
92981451 ATGTT
1 ATGTT
92981456 TACTACTTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
20 4 0.11
21 16 0.46
22 11 0.31
23 4 0.11
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (21 bp):
ATGTTGAGTAATATGCAAATT
Found at i:92981441 original size:43 final size:44
Alignment explanation
Indices: 92981390--92981477 Score: 169
Period size: 43 Copynumber: 2.0 Consensus size: 44
92981380 GTGGTAAATG
92981390 TTGAGTAATATGCAAATTATGTTTACTACTTGATAAATAT-AAT
1 TTGAGTAATATGCAAATTATGTTTACTACTTGATAAATATGAAT
92981433 TTGAGTAATATGCAAATTATGTTTACTACTTGATAAATATGAAT
1 TTGAGTAATATGCAAATTATGTTTACTACTTGATAAATATGAAT
92981477 T
1 T
92981478 GCTACTGAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 40 0.91
44 4 0.09
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (44 bp):
TTGAGTAATATGCAAATTATGTTTACTACTTGATAAATATGAAT
Found at i:92981470 original size:21 final size:21
Alignment explanation
Indices: 92981403--92981470 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
92981393 AGTAATATGC
92981403 AAATTATGTTTACTACTTGAT
1 AAATTATGTTTACTACTTGAT
* * * *
92981424 AAATATAAT-TTGAGTAATATG-C
1 AAAT-T-ATGTTTACTACT-TGAT
92981446 AAATTATGTTTACTACTTGAT
1 AAATTATGTTTACTACTTGAT
92981467 AAAT
1 AAAT
92981471 ATGAATTGCT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
20 4 0.12
21 15 0.44
22 11 0.32
23 4 0.12
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (21 bp):
AAATTATGTTTACTACTTGAT
Found at i:92981651 original size:46 final size:46
Alignment explanation
Indices: 92981601--92982509 Score: 1671
Period size: 46 Copynumber: 19.7 Consensus size: 46
92981591 TGGTTGAGCA
92981601 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981647 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981693 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981739 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981785 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981831 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981923 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92981969 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982061 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982107 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982153 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982199 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982291 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
92982337 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
92982383 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
92982428 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
92982476 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92982510 GGGGCGGGTT
Statistics
Matches: 843, Mismatches: 13, Indels: 14
0.97 0.01 0.02
Matches are distributed among these distances:
43 6 0.01
45 4 0.00
46 795 0.94
47 29 0.03
48 4 0.00
50 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:92982771 original size:19 final size:20
Alignment explanation
Indices: 92982734--92982771 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92982724 ATAAGGTGGT
92982734 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
92982754 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
92982772 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:92986145 original size:12 final size:11
Alignment explanation
Indices: 92986124--92986170 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
92986114 AAAAGTTTTT
92986124 AATT-AAAATA
1 AATTAAAAATA
92986134 ATATTAAAAATA
1 A-ATTAAAAATA
*
92986146 AATTAAACATAA
1 AATTAAAAAT-A
*
92986158 AATAAAAAATA
1 AATTAAAAATA
92986169 AA
1 AA
92986171 AAAAAACCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 1 0.03
11 14 0.45
12 16 0.52
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (11 bp):
AATTAAAAATA
Found at i:92986454 original size:44 final size:44
Alignment explanation
Indices: 92986405--92986493 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
92986395 GTTCAGAAAG
*
92986405 AAAAAATTATTTTAATATTATTTTATAATCTATAGTATGATAAT
1 AAAAAATTATTTTAATATTATTCTATAATCTATAGTATGATAAT
92986449 AAAAAATTATTTTAATATTATTCTATAATCTATAGTATGATAAT
1 AAAAAATTATTTTAATATTATTCTATAATCTATAGTATGATAAT
92986493 A
1 A
92986494 GTATTGTGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (44 bp):
AAAAAATTATTTTAATATTATTCTATAATCTATAGTATGATAAT
Found at i:92987905 original size:57 final size:57
Alignment explanation
Indices: 92987827--92987948 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 57
92987817 AATCTCTCTC
* * * * * * * *
92987827 GAGCAAATGTTACAATTAGGATTTATCCTGTACTAGTAATCCTAATTGAGCTCTTTT
1 GAGCATATGTTACAATAAGGATTCAACCTGGACTAGTAATCCTAATTAAGCTCATGT
*
92987884 GAGCATATGTTACAGA-AAGGATTCAACCTGGACTAGTAATCCTAATTAAGTTCATGT
1 GAGCATATGTTACA-ATAAGGATTCAACCTGGACTAGTAATCCTAATTAAGCTCATGT
92987941 GAGCATAT
1 GAGCATAT
92987949 ATTGGAGACA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 54 0.98
58 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (57 bp):
GAGCATATGTTACAATAAGGATTCAACCTGGACTAGTAATCCTAATTAAGCTCATGT
Found at i:92987962 original size:57 final size:57
Alignment explanation
Indices: 92987844--92987974 Score: 154
Period size: 57 Copynumber: 2.3 Consensus size: 57
92987834 TGTTACAATT
* * * * * *
92987844 AGGATTTATCCTGTACTAGTAATCCTAATTGAGCTCTTTTGAGCATATGTTACAGAA
1 AGGATTTAACCTGGACTAGTAATCCTAATTAAGCTCATGTGAGCATATATTACAGAA
* * ** *
92987901 AGGATTCAACCTGGACTAGTAATCCTAATTAAGTTCATGTGAGCATATATTGGAGAC
1 AGGATTTAACCTGGACTAGTAATCCTAATTAAGCTCATGTGAGCATATATTACAGAA
*
92987958 AGGATTTAGCCTGGACT
1 AGGATTTAACCTGGACT
92987975 GATAACCCTG
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (57 bp):
AGGATTTAACCTGGACTAGTAATCCTAATTAAGCTCATGTGAGCATATATTACAGAA
Found at i:92989504 original size:22 final size:22
Alignment explanation
Indices: 92989448--92989504 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
92989438 ACTGTCTGCA
* *
92989448 ACACGGGCGTGTCCCTTGAACC
1 ACACAGGCGTGTGCCTTGAACC
* *
92989470 ACATAGGCGTGTGCCTTGGACC
1 ACACAGGCGTGTGCCTTGAACC
92989492 ACACAGGCGTGTG
1 ACACAGGCGTGTG
92989505 AGCCCTGCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (22 bp):
ACACAGGCGTGTGCCTTGAACC
Found at i:92990712 original size:52 final size:52
Alignment explanation
Indices: 92990654--92990757 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
92990644 ATTCATATGA
* *
92990654 TACTATTTTCTACTTCTACTGATTGAAGCCCTGAATTGCGAATATGCAAATT
1 TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
92990706 TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
1 TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
92990758 ATATTGTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (52 bp):
TACTATTTTCTACTTCTACTAATTGAAGCCCTGAATTGCGAATATACAAATT
Found at i:92992614 original size:40 final size:40
Alignment explanation
Indices: 92992543--92993375 Score: 1355
Period size: 40 Copynumber: 20.9 Consensus size: 40
92992533 TATCTAGCAC
* * *
92992543 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
92992582 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92992622 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92992662 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92992702 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92992742 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92992782 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92992822 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92992862 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92992902 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92992942 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92992982 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92993022 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92993062 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92993102 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92993142 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
92993182 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
92993222 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* *
92993262 AGCCTGCGGGCCTTTAAGCCCGGATACGATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
92993302 AGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* *
92993342 AGCCTGCGGGTCTTTAAGCCCAGATACCATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
92993376 CATCAAATAA
Statistics
Matches: 736, Mismatches: 56, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
39 16 0.02
40 720 0.98
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:92992675 original size:80 final size:80
Alignment explanation
Indices: 92992570--92993375 Score: 1513
Period size: 80 Copynumber: 10.1 Consensus size: 80
92992560 CCCGGATGTC
92992570 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92992635 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92992650 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92992715 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92992730 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92992795 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92992810 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92992875 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92992890 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92992955 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92992970 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92993035 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92993050 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92993115 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
92993130 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
92993195 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
* * *
92993210 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGCCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
* *
92993275 TTAAGCCCGGATACG
66 TTAAGCCTGGATACA
* * *
92993290 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACGATTCCAGCACGAAGCCTGCGGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
** *
92993355 TTAAGCCCAGATACC
66 TTAAGCCTGGATACA
92993370 ATTCCA
1 ATTCCA
92993376 CATCAAATAA
Statistics
Matches: 717, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 717 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (80 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
TTAAGCCTGGATACA
Found at i:92993708 original size:50 final size:50
Alignment explanation
Indices: 92993633--92993730 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
92993623 TTATAAATTT
92993633 TATGCTAAAGGCGATTACTCAAAACTTACCTTGTATCTTTCTGAACAAGG
1 TATGCTAAAGGCGATTACTCAAAACTTACCTTGTATCTTTCTGAACAAGG
92993683 TATGCTAAAGGCGATTACTCAAAACTTACCTTGTATCTTTCTGAACAA
1 TATGCTAAAGGCGATTACTCAAAACTTACCTTGTATCTTTCTGAACAA
92993731 ATTTCGGGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (50 bp):
TATGCTAAAGGCGATTACTCAAAACTTACCTTGTATCTTTCTGAACAAGG
Found at i:93001648 original size:80 final size:80
Alignment explanation
Indices: 93001543--93001939 Score: 740
Period size: 80 Copynumber: 5.0 Consensus size: 80
93001533 CCCGGATGTC
93001543 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
93001608 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
93001623 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
93001688 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
93001703 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
93001768 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
93001783 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
93001848 TTAAGCCTGGATACA
66 TTAAGCCTGGATACA
* * * * *
93001863 ATTCCAGCACGAAGCCTGCGGGTCTTTAGGCTCGGATTCAATTCCAGCACGAAGCCTGCGGGTCT
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
*
93001928 TTAAGCCCGGAT
66 TTAAGCCTGGAT
93001940 TGTTTTTATC
Statistics
Matches: 311, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 311 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (80 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGGTCT
TTAAGCCTGGATACA
Found at i:93001940 original size:40 final size:40
Alignment explanation
Indices: 93001516--93001939 Score: 663
Period size: 40 Copynumber: 10.6 Consensus size: 40
93001506 TATCTAGCAC
* * *
93001516 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
93001555 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
93001595 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
93001635 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
93001675 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
93001715 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
93001755 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
93001795 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
93001835 AGCCTACAGGTCTTTAAGCCTGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
93001875 AGCCTGCGGGTCTTTAGGCTCGGATTCAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
93001915 AGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGCGGGTCTTTAAGCCCGGAT
93001940 TGTTTTTATC
Statistics
Matches: 351, Mismatches: 32, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 16 0.05
40 335 0.95
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:93006726 original size:21 final size:20
Alignment explanation
Indices: 93006702--93006744 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
93006692 GCCTAAGATG
*
93006702 TAAATTGGATTGAATTGAGTT
1 TAAATTGGATTAAATTGA-TT
*
93006723 TAAATTGTATTAAATTGATT
1 TAAATTGGATTAAATTGATT
93006743 TA
1 TA
93006745 CTCGTATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (20 bp):
TAAATTGGATTAAATTGATT
Found at i:93007400 original size:57 final size:57
Alignment explanation
Indices: 93007217--93007414 Score: 181
Period size: 57 Copynumber: 3.5 Consensus size: 57
93007207 CATTATAGAT
* * ** * * *
93007217 AGGATTTAGCCCGGACGGGTAATCCTGATATAATCTC-TCTCGAGCATATGTTACA-ATT
1 AGGATTCAGCCTGGACTTGTAATCCTAAT-TAAGCTCTTCT-GAGCATATGTTACAGA-A
*
93007275 AGGATTTA-CCTTGGAC-TGATAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
1 AGGATTCAGCC-TGGACTTG-TAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
* ** *
93007332 AGGATTCAGCCTGGACTTGTAATCCTAATTAAGCTCTTTTGAGCATATGTTGGAGAC
1 AGGATTCAGCCTGGACTTGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
* *
93007389 AGGAATT-AGCCTGAACTGGTAATCCT
1 AGG-ATTCAGCCTGGACTTGTAATCCT
93007415 GTTATATTAT
Statistics
Matches: 121, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
57 89 0.74
58 32 0.26
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (57 bp):
AGGATTCAGCCTGGACTTGTAATCCTAATTAAGCTCTTCTGAGCATATGTTACAGAA
Found at i:93010384 original size:26 final size:26
Alignment explanation
Indices: 93010355--93010435 Score: 65
Period size: 26 Copynumber: 3.0 Consensus size: 26
93010345 ATTTACACGA
93010355 AATGGTTATATAAAGTATATATATGG
1 AATGGTTATATAAAGTATATATATGG
* * **
93010381 AATGATTATATGAA-TCAGGTATATGG
1 AATGGTTATATAAAGT-ATATATATGG
* * *
93010407 AAAATAGTTATATAAAGTGTTTATATGG
1 --AATGGTTATATAAAGTATATATATGG
93010435 A
1 A
93010436 GTGTTGATAT
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
25 1 0.02
26 21 0.51
28 18 0.44
29 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.20, T:0.37
Consensus pattern (26 bp):
AATGGTTATATAAAGTATATATATGG
Found at i:93012207 original size:26 final size:26
Alignment explanation
Indices: 93012178--93012232 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
93012168 GGATACCTGG
*
93012178 GTAATTACTCCTCATCATGGAGCATT
1 GTAATTACTCCTCACCATGGAGCATT
93012204 GTAATTACTCCTCACCATGGAGCATT
1 GTAATTACTCCTCACCATGGAGCATT
93012230 GTA
1 GTA
93012233 GTGTTGAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
GTAATTACTCCTCACCATGGAGCATT
Found at i:93012325 original size:20 final size:20
Alignment explanation
Indices: 93012302--93012385 Score: 91
Period size: 20 Copynumber: 4.2 Consensus size: 20
93012292 TGCAAATAGT
* *
93012302 GGCAAGAAAGTGCAATCAGA
1 GGCATGAAAGTGCAATCAGG
*
93012322 GGCACCG-AAGTGCAAT-AGGG
1 GGCA-TGAAAGTGCAATCA-GG
*
93012342 GGCATGAAAGTGCAATTAGG
1 GGCATGAAAGTGCAATCAGG
*
93012362 GGCATGAAAGTGCAATCAAG
1 GGCATGAAAGTGCAATCAGG
93012382 GGCA
1 GGCA
93012386 CCATAGTGCA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
19 2 0.04
20 51 0.93
21 2 0.04
ACGTcount: A:0.37, C:0.15, G:0.35, T:0.13
Consensus pattern (20 bp):
GGCATGAAAGTGCAATCAGG
Found at i:93012385 original size:40 final size:39
Alignment explanation
Indices: 93012302--93012407 Score: 97
Period size: 40 Copynumber: 2.6 Consensus size: 39
93012292 TGCAAATAGT
* * * *
93012302 GGCAAGAAAGTGCAATCAGAGGCACCGAAGTGCAATAGGG
1 GGCAAGAAAGTGCAATTAGGGGCA-TGAAGTGCAATAGAG
*
93012342 GGCATGAAAGTGCAATTAGGGGCATGAAAGTGCAATCA-AG
1 GGCAAGAAAGTGCAATTAGGGGCATG-AAGTGCAAT-AGAG
** *
93012382 GGCACCATAGTGCAAATTAGGGGCAT
1 GGCAAGAAAGTGC-AATTAGGGGCAT
93012408 CGACATTTCT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 41 0.75
41 13 0.24
ACGTcount: A:0.36, C:0.16, G:0.33, T:0.15
Consensus pattern (39 bp):
GGCAAGAAAGTGCAATTAGGGGCATGAAGTGCAATAGAG
Found at i:93019775 original size:20 final size:20
Alignment explanation
Indices: 93019750--93019790 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
93019740 CTTCTAGGAG
93019750 TTAGTTCTTTGGATATTGAC
1 TTAGTTCTTTGGATATTGAC
93019770 TTAGTTCTTTGGATATTGAC
1 TTAGTTCTTTGGATATTGAC
93019790 T
1 T
93019791 CAAGAACTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.51
Consensus pattern (20 bp):
TTAGTTCTTTGGATATTGAC
Found at i:93029639 original size:19 final size:20
Alignment explanation
Indices: 93029617--93029662 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
93029607 GAAATTGATG
93029617 AAAAATGTAGAATGAG-AAA
1 AAAAATGTAGAATGAGTAAA
* *
93029636 AAAAAT-AAGAATGAGTTAA
1 AAAAATGTAGAATGAGTAAA
93029655 AAAAATGT
1 AAAAATGT
93029663 TGTAATAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (20 bp):
AAAAATGTAGAATGAGTAAA
Found at i:93029646 original size:18 final size:19
Alignment explanation
Indices: 93029625--93029660 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
93029615 TGAAAAATGT
93029625 AGAATGAG-AAAAAAAATA
1 AGAATGAGTAAAAAAAATA
*
93029643 AGAATGAGTTAAAAAAAT
1 AGAATGAGTAAAAAAAAT
93029661 GTTGTAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (19 bp):
AGAATGAGTAAAAAAAATA
Found at i:93035802 original size:7 final size:8
Alignment explanation
Indices: 93035788--93035812 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93035778 AATTGAATTA
93035788 ATTTTTTT
1 ATTTTTTT
93035796 ATTTTTTT
1 ATTTTTTT
93035804 ATTTTTTT
1 ATTTTTTT
93035812 A
1 A
93035813 GAGGTTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:93037563 original size:8 final size:8
Alignment explanation
Indices: 93037550--93037575 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
93037540 TTAGCTCATT
93037550 TAGTTAAA
1 TAGTTAAA
93037558 TAGTTAAA
1 TAGTTAAA
93037566 TAGTTAAA
1 TAGTTAAA
93037574 TA
1 TA
93037576 ATTTTATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (8 bp):
TAGTTAAA
Found at i:93040701 original size:92 final size:93
Alignment explanation
Indices: 93040537--93040706 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
93040527 CCCATAAGAA
* **
93040537 AACTCAGACTCAACCCAATGAGCTCAGGCGTTCGCATCCATAAGTGAATTCGGACTCAACTCAAC
1 AACTCAGACTCAACCCAACGAGCTCAGGAATTCGCATCCATAAGTGAATTCGGACTCAACTCAAC
*
93040602 GAGCTCGGATGCCTAGTTACATCTCACG
66 GACCTCGGATGCCTAGTTACATCTCACG
* * *
93040630 AACTCGGACTCAACTCAACGAGCTC-GGAATTCGCATCCATAAGTGAACTT-GGACTCGACTCAA
1 AACTCAGACTCAACCCAACGAGCTCAGGAATTCGCATCCATAAGTGAA-TTCGGACTCAACTCAA
*
93040693 TGACCTCGGATGCC
65 CGACCTCGGATGCC
93040707 CAAATATCCT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
92 44 0.65
93 24 0.35
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
AACTCAGACTCAACCCAACGAGCTCAGGAATTCGCATCCATAAGTGAATTCGGACTCAACTCAAC
GACCTCGGATGCCTAGTTACATCTCACG
Found at i:93066378 original size:43 final size:43
Alignment explanation
Indices: 93066325--93066408 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
93066315 AAGATATGTG
* * * *
93066325 GCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCAT
1 GCATCAGAGCTAGTTGAGAGGTCCGAGTTCATGATGGATGCAT
*
93066368 GCATCAGAGCTAGTTGAGTGGTCCGAGTTCATGATGGATGC
1 GCATCAGAGCTAGTTGAGAGGTCCGAGTTCATGATGGATGC
93066409 GATTCATGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (43 bp):
GCATCAGAGCTAGTTGAGAGGTCCGAGTTCATGATGGATGCAT
Found at i:93070334 original size:29 final size:27
Alignment explanation
Indices: 93070316--93070385 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
93070306 ATATTAAGTC
93070316 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
93070343 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
93070371 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
93070386 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:93070379 original size:28 final size:28
Alignment explanation
Indices: 93070316--93070413 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
93070306 ATATTAAGTC
*
93070316 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
93070343 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
93070371 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
93070400 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93070414 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:93077133 original size:22 final size:22
Alignment explanation
Indices: 93077105--93077149 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
93077095 GTGGATACTT
93077105 ATTCTTCCAGTCAGTTTATTCA
1 ATTCTTCCAGTCAGTTTATTCA
93077127 ATTCTTCCAGTCAGTTTATTCA
1 ATTCTTCCAGTCAGTTTATTCA
93077149 A
1 A
93077150 CTACCGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.44
Consensus pattern (22 bp):
ATTCTTCCAGTCAGTTTATTCA
Found at i:93084533 original size:27 final size:27
Alignment explanation
Indices: 93084503--93084583 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
93084493 AATCTCATAT
* *
93084503 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
** *
93084530 CTGTAGGGTAGAATTACTGAAATGTCA
1 CTGTAGGGTAGAATTACTGAAATACCC
*
93084557 TTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
93084584 TTGGTTTACA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:93084622 original size:27 final size:26
Alignment explanation
Indices: 93084593--93084745 Score: 146
Period size: 27 Copynumber: 5.7 Consensus size: 26
93084583 CTTGGTTTAC
* *
93084593 AAAATTACCAAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCT-GATTTGT
* *
93084620 AAAGTTACCAAAATATCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGATTTGT
93084647 AAAATTACCAAAATATCCCT-AGTTTGT
1 AAAATTACCAAAATA-CCCTGA-TTTGT
* *
93084674 AGAATTATCAAAATACCACTGATTTGT
1 AAAATTACCAAAATACC-CTGATTTGT
* **
93084701 GAAATTACCAAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCT-GATTTGT
* *
93084728 AAAATTATCGAAATACCC
1 AAAATTACCAAAATACCC
93084746 AAAATACCCT
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
26 4 0.04
27 96 0.91
28 5 0.05
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGATTTGT
Found at i:93084634 original size:54 final size:53
Alignment explanation
Indices: 93084566--93084722 Score: 165
Period size: 54 Copynumber: 2.9 Consensus size: 53
93084556 ATTGTAGGGT
** **
93084566 AGAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGC
1 AGAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCTCGATTAGC
* * *
93084620 A-AAGTTACCAAAATATCCCTGGTTTGTAAAATTACCAAAATATCCCTAG-TTTGT
1 AGAA-TTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATA-CCCTCGATTAGC
* * *
93084674 AGAATTATCAAAATACCACTGATTTGTGAAATTACCAAAATACCCTCGA
1 AGAATTACCAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTCGA
93084723 CCTGTAAAAT
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
53 9 0.10
54 67 0.78
55 10 0.12
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (53 bp):
AGAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTCGATTAGC
Found at i:93084734 original size:54 final size:52
Alignment explanation
Indices: 93084593--93084745 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 52
93084583 CTTGGTTTAC
* * * *
93084593 AAAATTACCAAAATACCCTCGATTAGCAAAGTTACCAAAATATCCCTGGTTTGT
1 AAAATTACCAAAATACCCTCGATT-GTAAAATTATCAAAATA-CCCTGATTTGT
* * *
93084647 AAAATTACCAAAATATCCCTAGTTTGTAGAATTATCAAAATACCACTGATTTGT
1 AAAATTACCAAAATA-CCCTCGATTGTAAAATTATCAAAATACC-CTGATTTGT
* * *
93084701 GAAATTACCAAAATACCCTCGACCTGTAAAATTATCGAAATACCC
1 AAAATTACCAAAATACCCTCGA-TTGTAAAATTATCAAAATACCC
93084746 AAAATACCCT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
53 8 0.10
54 68 0.82
55 7 0.08
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.28
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTCGATTGTAAAATTATCAAAATACCCTGATTTGT
Found at i:93084794 original size:27 final size:27
Alignment explanation
Indices: 93084764--93084879 Score: 110
Period size: 27 Copynumber: 4.3 Consensus size: 27
93084754 CTTAAATTGT
*
93084764 AAAATTACCAAAATACCCCTGATTTGG
1 AAAATTACCAAAATACCCCTGATTTAG
* **
93084791 AAAATTATCAAAATACCATTGATTTAG
1 AAAATTACCAAAATACCCCTGATTTAG
* * *
93084818 AAAATTA-TAGAATTACCCCTGATTTAC
1 AAAATTACCA-AAATACCCCTGATTTAG
* *
93084845 AAAATTACAAAAATACCCTTGACTTTCA-
1 AAAATTACCAAAATACCCCTGA-TTT-AG
93084873 AAAATTA
1 AAAATTA
93084880 TAGAAATACC
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 60 0.82
28 11 0.15
29 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTAG
Found at i:93084804 original size:54 final size:53
Alignment explanation
Indices: 93084745--93084864 Score: 127
Period size: 54 Copynumber: 2.2 Consensus size: 53
93084735 TCGAAATACC
**
93084745 CAAAATACCCTTAAATT-GTAAAATTACCA-AAATACCCCTGATTTGGAAAATTA
1 CAAAATACCCTTAAATTAG-AAAATTA-CAGAAATACCCCTGATTTACAAAATTA
* * * * *
93084798 TCAAAATACCATTGATTTAGAAAATTATAGAATTACCCCTGATTTACAAAATTA
1 -CAAAATACCCTTAAATTAGAAAATTACAGAAATACCCCTGATTTACAAAATTA
93084852 CAAAAATACCCTT
1 C-AAAATACCCTT
93084865 GACTTTCAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
53 2 0.04
54 52 0.95
55 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (53 bp):
CAAAATACCCTTAAATTAGAAAATTACAGAAATACCCCTGATTTACAAAATTA
Found at i:93084822 original size:90 final size:90
Alignment explanation
Indices: 93084670--93084835 Score: 210
Period size: 90 Copynumber: 1.8 Consensus size: 90
93084660 TATCCCTAGT
* * *
93084670 TTGTAGAATTATCAAAATACCACTGATTTGTGAAATTACCAAAATACCCTCGACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAATACCATCGACCTGTAAAATTA
*
93084735 TCGAAATACCCAAAATACCCTTAAA
66 TAGAAATACCCAAAATACCCTTAAA
* * * **
93084760 TTGTAAAATTACCAAAATACCCCTGATTTG-GAAAATTATCAAAATACCATTGATTTAG-AAAAT
1 TTGTAAAATTACCAAAATACCACTGATTTGTG-AAATTACCAAAATACCATCGACCT-GTAAAAT
*
93084823 TATAGAATTACCC
64 TATAGAAATACCC
93084836 CTGATTTACA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
89 1 0.02
90 62 0.97
91 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.30
Consensus pattern (90 bp):
TTGTAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAATACCATCGACCTGTAAAATTA
TAGAAATACCCAAAATACCCTTAAA
Found at i:93084903 original size:55 final size:54
Alignment explanation
Indices: 93084774--93084916 Score: 139
Period size: 55 Copynumber: 2.6 Consensus size: 54
93084764 AAAATTACCA
* **
93084774 AAATACCCCTGATTTGGAAAATTATCAAAATACCATTGATTTAGAAAATTATAG
1 AAATACCACTGATTTACAAAATTATCAAAATACCATTGATTTAGAAAATTATAG
* * *
93084828 AATTACCCCTGATTTACAAAATTA-CAAAAATACCCTTGACTTTCA-AAAATTATAG
1 AAATACCACTGATTTACAAAATTATC-AAAATACCATTGA-TTT-AGAAAATTATAG
* * **
93084883 AAATACCA-TTAGTTTTCAAAATTATTGAAATACC
1 AAATACCACTGA-TTTACAAAATTATCAAAATACC
93084917 CTTAGTTTGT
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
53 1 0.01
54 35 0.47
55 37 0.50
56 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATACCACTGATTTACAAAATTATCAAAATACCATTGATTTAGAAAATTATAG
Found at i:93084912 original size:27 final size:28
Alignment explanation
Indices: 93084868--93084924 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
93084858 TACCCTTGAC
93084868 TTTCAAAAATTATAGAAATACCATTAGT
1 TTTCAAAAATTATAGAAATACCATTAGT
* *
93084896 TTTC-AAAATTATTGAAATACCCTTAGT
1 TTTCAAAAATTATAGAAATACCATTAGT
93084923 TT
1 TT
93084925 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (28 bp):
TTTCAAAAATTATAGAAATACCATTAGT
Found at i:93085243 original size:41 final size:41
Alignment explanation
Indices: 93085186--93085309 Score: 167
Period size: 41 Copynumber: 3.0 Consensus size: 41
93085176 GAGGGAGAAA
*
93085186 TTGAGGATCGTATGGTTGCTTGGCGACCGTGGATCCACCGG
1 TTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCGG
* * ** * *
93085227 TTGAGGATCGCATGGTTGTTTGATAACCGTGGACCCACCGA
1 TTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCGG
* *
93085268 TTAAGGATCGTATGGTTGCTTGACGACTGTGGATCCACCGG
1 TTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCGG
93085309 T
1 T
93085310 GGCTTTTAAG
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.28
Consensus pattern (41 bp):
TTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCGG
Found at i:93085501 original size:22 final size:22
Alignment explanation
Indices: 93085449--93085513 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
93085439 GCCAATTATT
* * *
93085449 CTGATTATGGTTTTGCGCCAAC
1 CTGATTATGGCTCTGAGCCAAC
*
93085471 CT-ACATATGGCTCTGAGCCAAC
1 CTGA-TTATGGCTCTGAGCCAAC
* *
93085493 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGAGCCAA
93085514 GCGTATTTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGAGCCAAC
Found at i:93085741 original size:22 final size:22
Alignment explanation
Indices: 93085716--93085763 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
93085706 GTTGCTGCGA
* *
93085716 TGTTTACGGCTATGTGCTGTCC
1 TGTTTACGGCCATGAGCTGTCC
*
93085738 TGTTTACGGCCATGAGCTGTTC
1 TGTTTACGGCCATGAGCTGTCC
93085760 TGTT
1 TGTT
93085764 GACTTAGTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.10, C:0.21, G:0.27, T:0.42
Consensus pattern (22 bp):
TGTTTACGGCCATGAGCTGTCC
Found at i:93116205 original size:13 final size:13
Alignment explanation
Indices: 93116167--93116196 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
93116157 TCACCAATCA
93116167 AATTGTAATAATT
1 AATTGTAATAATT
93116180 AATTGTAATAATT
1 AATTGTAATAATT
93116193 AATT
1 AATT
93116197 TTCAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
AATTGTAATAATT
Found at i:93119107 original size:15 final size:15
Alignment explanation
Indices: 93119089--93119119 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
93119079 TCCACCGAAG
93119089 CCACCCCCACCCCCC
1 CCACCCCCACCCCCC
*
93119104 CCACCCGCACCCCCC
1 CCACCCCCACCCCCC
93119119 C
1 C
93119120 NTCCTCCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.84, G:0.03, T:0.00
Consensus pattern (15 bp):
CCACCCCCACCCCCC
Found at i:93119165 original size:30 final size:30
Alignment explanation
Indices: 93119131--93119187 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
93119121 TCCTCCAGCT
93119131 CCTCCTCCAGCACCACCACCTCCACCAAGC
1 CCTCCTCCAGCACCACCACCTCCACCAAGC
* *
93119161 CCTCCTCCAGCTCCACCACCTGCACCA
1 CCTCCTCCAGCACCACCACCTCCACCA
93119188 CCACCTAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.60, G:0.07, T:0.12
Consensus pattern (30 bp):
CCTCCTCCAGCACCACCACCTCCACCAAGC
Found at i:93119288 original size:60 final size:60
Alignment explanation
Indices: 93119212--93119388 Score: 237
Period size: 60 Copynumber: 3.0 Consensus size: 60
93119202 TCCACCTCCC
* * * * * *
93119212 AGCCCTTGGCCACCACCTAGTCCTCCACCCCCTCCTAGTCCACCTCCTGCACCTCCACCA
1 AGCCCATGGCCACCACCAAGTCCTCCACCACCACCCAATCCACCTCCTGCACCTCCACCA
* * *
93119272 AGCCCATGGCCCCCACCGAGTCCTCCACCACCACCCAATCCACCTCCTGCACCTCCACCC
1 AGCCCATGGCCACCACCAAGTCCTCCACCACCACCCAATCCACCTCCTGCACCTCCACCA
* * * *
93119332 AGCCCATGGCCACCGCCAAGTCCCCCACCACCGCCCAATCCACCTCCTGCTCCTCCA
1 AGCCCATGGCCACCACCAAGTCCTCCACCACCACCCAATCCACCTCCTGCACCTCCA
93119389 AGCTTGTGAC
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 103 1.00
ACGTcount: A:0.19, C:0.56, G:0.11, T:0.14
Consensus pattern (60 bp):
AGCCCATGGCCACCACCAAGTCCTCCACCACCACCCAATCCACCTCCTGCACCTCCACCA
Found at i:93119327 original size:30 final size:29
Alignment explanation
Indices: 93119293--93119388 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 29
93119283 CCCACCGAGT
93119293 CCTCCACCACCACCCAATCCACCTCCTGC
1 CCTCCACCACCACCCAATCCACCTCCTGC
* *
93119322 ACCTCCA-C-CCAGCCC-ATGGCCACCGCCAAGTC
1 -CCTCCACCACCA-CCCAAT--CCACCTCC-TG-C
*
93119354 CC-CCACCACCGCCCAATCCACCTCCTGC
1 CCTCCACCACCACCCAATCCACCTCCTGC
93119382 TCCTCCA
1 -CCTCCA
93119389 AGCTTGTGAC
Statistics
Matches: 51, Mismatches: 5, Indels: 20
0.67 0.07 0.26
Matches are distributed among these distances:
28 6 0.12
29 7 0.14
30 26 0.51
31 7 0.14
32 5 0.10
ACGTcount: A:0.20, C:0.59, G:0.08, T:0.12
Consensus pattern (29 bp):
CCTCCACCACCACCCAATCCACCTCCTGC
Done.