Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 287 of 310
Found at i:94496749 original size:27 final size:27
Alignment explanation
Indices: 94496380--94496749 Score: 266
Period size: 27 Copynumber: 13.7 Consensus size: 27
94496370 TTTAGTTTAC
*
94496380 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* * * *
94496407 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
* *
94496434 AAAATCACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* * * **
94496461 AAAATTACCAAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTGT
* *
94496488 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * *
94496515 AAAATCACTAAAATACCCTTTG-TTTAT
1 AAAATTACCAAAATACCC-TCGATTTGT
*
94496542 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
*
94496569 AAAATTACCAAAATACCCT-TAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
94496596 AAAATTACCAAAATACCC-CTAATTTGC
1 AAAATTACCAAAATACCCTC-GATTTGT
* ** **
94496623 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
** *
94496650 AAAATTATTAAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * **
94496677 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGT
* ***** *
94496704 AGAATTACTGTTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
94496731 AAAATTACCAAAATGCCCT
1 AAAATTACCAAAATACCCT
94496750 TGTAGGGTAG
Statistics
Matches: 273, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.00
27 267 0.98
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:94496766 original size:27 final size:27
Alignment explanation
Indices: 94496733--94497224 Score: 635
Period size: 27 Copynumber: 18.3 Consensus size: 27
94496723 CGATTTATAA
* * *
94496733 AATTACCAAAATGCCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
94496760 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94496787 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94496814 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
94496841 AATTATCGGAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
94496868 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
94496895 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
94496922 AATTACCGAAAAACCCCTACAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
94496949 AATTACCGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
94496976 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94497003 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
94497030 AATTATCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94497057 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
94497084 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94497111 AATTACCAAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
94497138 AACTACCGAAATAACTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
94497165 AATTACCAAAATACCCATGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
94497192 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
94497218 AATTACC
1 AATTACC
94497225 ATTTTGCCCC
Statistics
Matches: 404, Mismatches: 61, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 16 0.04
27 388 0.96
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:94497668 original size:27 final size:27
Alignment explanation
Indices: 94497615--94497681 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
94497605 TGGCTACCGT
* * *
94497615 TGCCACATTATCTAT-TCTGGTGGCTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
94497641 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
94497668 TGTCACAATATCTG
1 TGCCACAATATCTG
94497682 ATAACTGAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 12 0.35
27 22 0.65
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:94497851 original size:19 final size:19
Alignment explanation
Indices: 94497829--94497886 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
94497819 TTCTGATTTT
94497829 TGATTCTGTTACTTGATAC
1 TGATTCTGTTACTTGATAC
94497848 TGATTCTG--A-TT--T--
1 TGATTCTGTTACTTGATAC
*
94497860 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACTTGATAC
94497879 TGATTCTG
1 TGATTCTG
94497887 ATTTTGATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
12 8 0.26
14 2 0.06
15 1 0.03
16 2 0.06
17 2 0.06
19 16 0.52
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (19 bp):
TGATTCTGTTACTTGATAC
Found at i:94497856 original size:6 final size:6
Alignment explanation
Indices: 94497818--94497956 Score: 83
Period size: 6 Copynumber: 22.3 Consensus size: 6
94497808 TTGCATTCAC
* * *
94497818 ATTCTG ATTTTTG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
94497868 -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG
*
94497918 ATTCTG ATTCTG -TCACGTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG A-TTCTG AT
94497957 AATGTTTCTT
Statistics
Matches: 104, Mismatches: 12, Indels: 34
0.69 0.08 0.23
Matches are distributed among these distances:
5 9 0.09
6 72 0.69
7 18 0.17
8 4 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:94497864 original size:31 final size:31
Alignment explanation
Indices: 94497818--94497947 Score: 197
Period size: 31 Copynumber: 4.2 Consensus size: 31
94497808 TTGCATTCAC
*
94497818 ATTCTGATTTTTGATTCTGTTACTTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
94497850 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
94497881 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
94497912 ATTCTGATTCTGATTCTGTCACGTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
94497943 ATTCT
1 ATTCT
94497948 AGTTCTGATA
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 84 0.92
32 7 0.08
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:94497912 original size:19 final size:19
Alignment explanation
Indices: 94497853--94497917 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
94497843 GATACTGATT
*
94497853 CTGATTTTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
*
94497872 CTGATACTGATTCTG--A-
1 CTGATATTGATTCTGTTAC
94497888 -T--T-TTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
94497903 CTGATATTGATTCTG
1 CTGATATTGATTCTG
94497918 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.61
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (19 bp):
CTGATATTGATTCTGTTAC
Found at i:94500389 original size:24 final size:23
Alignment explanation
Indices: 94500353--94500472 Score: 81
Period size: 24 Copynumber: 5.2 Consensus size: 23
94500343 GACACAAACG
94500353 TAGCTCTTTATGAG-TGTCCTGATA
1 TAGCTC-TTATGAGCT-TCCTGATA
94500377 TAGGCTCTTATGAGCTTCCTGATA
1 TA-GCTCTTATGAGCTTCCTGATA
*
94500401 TAGCTCTCT-TGAACTTCCT-AT-
1 TAGCTCT-TATGAGCTTCCTGATA
* *
94500422 TAAGCTC-AATGAGCTTCCT-ATTT
1 T-AGCTCTTATGAGCTTCCTGA-TA
* * *
94500445 TAAACTCTTATGAGTTTCTTGATA
1 T-AGCTCTTATGAGCTTCCTGATA
94500469 TAGC
1 TAGC
94500473 CCAGATAAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
21 11 0.14
22 8 0.10
23 22 0.28
24 31 0.40
25 6 0.08
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (23 bp):
TAGCTCTTATGAGCTTCCTGATA
Found at i:94500417 original size:23 final size:24
Alignment explanation
Indices: 94500369--94500419 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
94500359 TTTATGAGTG
*
94500369 TCCTGATATAGGCTCTTATGAGCT
1 TCCTGATATAGGCTCTTATGAACT
94500393 TCCTGATATA-GCTCTCT-TGAACT
1 TCCTGATATAGGCTCT-TATGAACT
94500416 TCCT
1 TCCT
94500420 ATTAAGCTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (24 bp):
TCCTGATATAGGCTCTTATGAACT
Found at i:94505312 original size:31 final size:31
Alignment explanation
Indices: 94505270--94505346 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
94505260 TAACGGTTAT
*
94505270 TGGGCCAAAGCCTTTTCATAAATCAAATCAC
1 TGGGCCGAAGCCTTTTCATAAATCAAATCAC
*
94505301 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCAAATCAC
94505332 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
94505347 ATTGTAAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCAAATCAC
Found at i:94505430 original size:42 final size:42
Alignment explanation
Indices: 94505370--94505461 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
94505360 TGGCCCATAG
*
94505370 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
94505412 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
94505454 GCCCATTT
1 GCCCATTT
94505462 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:94505648 original size:26 final size:26
Alignment explanation
Indices: 94505606--94505754 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
94505596 CCTCTTTAAT
*
94505606 AACTGGGGCA-AAGCCTTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
* *
94505631 AACTTGGG-AAAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
94505656 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
*
94505682 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTGGTA
***
94505708 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTGGTA
94505734 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
94505755 GCACTTCCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
24 1 0.01
25 28 0.24
26 86 0.75
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTTGGTA
Found at i:94505829 original size:20 final size:20
Alignment explanation
Indices: 94505804--94505860 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
94505794 TTATGAATTC
*
94505804 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
94505823 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
94505844 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
94505861 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:94506592 original size:27 final size:26
Alignment explanation
Indices: 94506557--94506634 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
94506547 GGGCATATTC
94506557 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
* *
94506584 GTCACTTTACCCTGCAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
*
94506611 GTCATTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
94506635 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.10
27 35 0.83
28 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.35
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:94506705 original size:27 final size:27
Alignment explanation
Indices: 94506675--94506782 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 27
94506665 GTAAATCTAC
94506675 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
94506702 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
94506728 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* **
94506758 AAATC-AGAGGTATTTTGGTAATTTT
1 AAACCAAG-GGTATTTCAGTAATTTT
94506783 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
26 3 0.05
27 38 0.58
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:94506824 original size:54 final size:54
Alignment explanation
Indices: 94506766--94506869 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
94506756 GTAAATCAGA
*
94506766 GGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCACAAACCAGT
* * *
94506820 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAAC
94506870 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 43 0.96
55 2 0.04
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACCAGT
Found at i:94506869 original size:27 final size:27
Alignment explanation
Indices: 94506766--94506869 Score: 138
Period size: 27 Copynumber: 3.9 Consensus size: 27
94506756 GTAAATCAGA
*
94506766 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * * *
94506793 GGTATTTCGATAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
94506820 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
94506847 GGTATTTTGGTAATTTTACAAAC
1 GGTATTTTGGTAATTTTACAAAC
94506870 NNNNNNNNNN
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 64 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:94515381 original size:40 final size:40
Alignment explanation
Indices: 94515283--94515585 Score: 389
Period size: 40 Copynumber: 7.6 Consensus size: 40
94515273 TCCTCGTTCA
* * * ** *
94515283 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
94515322 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
94515362 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
94515402 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
94515442 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
94515482 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
94515522 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
94515562 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
94515586 CAGCATTCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 194 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:94528575 original size:38 final size:38
Alignment explanation
Indices: 94528524--94528600 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
94528514 TCCATAATCA
94528524 AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
1 AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
*
94528562 AATTTGATTTATTCTCCCTTTTTATTCTATTGGATTTT
1 AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
94528600 A
1 A
94528601 TCTTTTTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.13, G:0.06, T:0.60
Consensus pattern (38 bp):
AATTTGATTTATTCTCCCTTTTTATTCTATTGAATTTT
Found at i:94543751 original size:8 final size:8
Alignment explanation
Indices: 94543738--94543784 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
94543728 ACACCCAGAT
94543738 TCACATAA
1 TCACATAA
94543746 TCACAT-A
1 TCACATAA
94543753 TACACATAA
1 T-CACATAA
* *
94543762 TCTCATGA
1 TCACATAA
*
94543770 GCACATAA
1 TCACATAA
94543778 TCACATA
1 TCACATA
94543785 GTTCCTAGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
7 2 0.06
8 27 0.87
9 2 0.06
ACGTcount: A:0.45, C:0.26, G:0.04, T:0.26
Consensus pattern (8 bp):
TCACATAA
Found at i:94549745 original size:20 final size:20
Alignment explanation
Indices: 94549720--94549760 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
94549710 GAATACGAAG
94549720 GAGTCTCAGTTGAAAATTGA
1 GAGTCTCAGTTGAAAATTGA
*
94549740 GAGTCTGAGTTGAAAATTGA
1 GAGTCTCAGTTGAAAATTGA
94549760 G
1 G
94549761 TTAGTACTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (20 bp):
GAGTCTCAGTTGAAAATTGA
Found at i:94554923 original size:46 final size:46
Alignment explanation
Indices: 94554873--94555027 Score: 138
Period size: 46 Copynumber: 3.3 Consensus size: 46
94554863 ACTCAGACGA
*
94554873 AACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTC
1 AACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
* * * * *
94554919 AACTCAAGGAGCTCGAATGCCTAGTT-ACAT-C-TCA-CGAACTCGGACTC
1 AACTCAACGAGCTCG---GGC--GTTCGCATCCATAAGTGAACTCGGACTC
* * *
94554966 AACTCAATGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTC
1 AACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
* *
94555012 AACTCTACGAGGTCGG
1 AACTCAACGAGCTCGG
94555028 ATGCCCAAAT
Statistics
Matches: 84, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.04
44 3 0.04
45 2 0.02
46 39 0.46
47 24 0.29
48 2 0.02
49 3 0.04
50 3 0.04
51 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
AACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTC
Found at i:94555360 original size:18 final size:18
Alignment explanation
Indices: 94555337--94555382 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
94555327 CTTGGTATTT
94555337 TTTCGATTTTAGCCCGAA
1 TTTCGATTTTAGCCCGAA
94555355 TTTCGATTTTAGCCCGAA
1 TTTCGATTTTAGCCCGAA
94555373 TTTCGATTTT
1 TTTCGATTTT
94555383 CCTTTCTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (18 bp):
TTTCGATTTTAGCCCGAA
Found at i:94557823 original size:30 final size:29
Alignment explanation
Indices: 94557781--94557837 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
94557771 AAAGATAACA
* *
94557781 AGAAAACCGAATAAAGAAATCTAAGATTG
1 AGAAAACCGAATAAAAAAATCCAAGATTG
*
94557810 AGAAACCCAGAATAAAAAAATCCAAGAT
1 AGAAAACC-GAATAAAAAAATCCAAGAT
94557838 ACGATACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.58, C:0.14, G:0.14, T:0.14
Consensus pattern (29 bp):
AGAAAACCGAATAAAAAAATCCAAGATTG
Found at i:94565442 original size:21 final size:20
Alignment explanation
Indices: 94565396--94565445 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
94565386 TTTTTTTTAG
*
94565396 AAATCATAAAAGAATCATAA
1 AAATTATAAAAGAATCATAA
* *
94565416 ATAATTATAAAAGAGTTATAGA
1 A-AATTATAAAAGAATCATA-A
94565438 AAATTATA
1 AAATTATA
94565446 TAAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.88
22 2 0.08
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (20 bp):
AAATTATAAAAGAATCATAA
Found at i:94565444 original size:10 final size:9
Alignment explanation
Indices: 94565412--94565486 Score: 55
Period size: 10 Copynumber: 7.7 Consensus size: 9
94565402 TAAAAGAATC
94565412 ATAAATAATT
1 ATAAA-AATT
94565422 ATAAAAGAGTT
1 ATAAAA-A-TT
94565433 ATAGAAAATT
1 ATA-AAAATT
94565443 ATATAAAATT
1 ATA-AAAATT
*
94565453 A-ATAAAATG
1 ATA-AAAATT
94565462 ATAAAAA-T
1 ATAAAAATT
94565470 ATTAAAAATTT
1 A-TAAAAA-TT
94565481 ATAAAA
1 ATAAAA
94565487 CTAGTACTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
8 1 0.02
9 19 0.35
10 24 0.44
11 8 0.15
12 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:94565459 original size:9 final size:10
Alignment explanation
Indices: 94565418--94565486 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 10
94565408 AATCATAAAT
94565418 AATTATA-AA
1 AATTATATAA
*
94565427 AGAGTTATAGAA
1 A-A-TTATATAA
94565439 AATTATATAA
1 AATTATATAA
94565449 AATTA-ATAA
1 AATTATATAA
*
94565458 AATGATA-AA
1 AATTATATAA
94565467 AA-TAT-TAAA
1 AATTATAT-AA
94565476 AATT-TATAA
1 AATTATATAA
94565485 AA
1 AA
94565487 CTAGTACTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
8 2 0.04
9 22 0.45
10 16 0.33
11 6 0.12
12 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (10 bp):
AATTATATAA
Found at i:94565524 original size:9 final size:8
Alignment explanation
Indices: 94565501--94565548 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 8
94565491 TACTTCTTTA
94565501 AAAATTTT
1 AAAATTTT
*
94565509 TAAATTTT
1 AAAATTTT
94565517 GAAAATTTT
1 -AAAATTTT
94565526 AATAATTTCT
1 AA-AATTT-T
94565536 AATAATTTT
1 AA-AATTTT
94565545 AAAA
1 AAAA
94565549 AATTAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 11 0.31
9 15 0.43
10 9 0.26
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (8 bp):
AAAATTTT
Found at i:94565852 original size:17 final size:17
Alignment explanation
Indices: 94565822--94565859 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
94565812 TAAAATAATT
*
94565822 TTTTTATAATTTTCACTA
1 TTTTTATAAGTTTCA-TA
94565840 TTTTTAT-AGTTTCATA
1 TTTTTATAAGTTTCATA
94565856 TTTT
1 TTTT
94565860 AATCTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTTATAAGTTTCATA
Found at i:94568722 original size:51 final size:52
Alignment explanation
Indices: 94568658--94568785 Score: 143
Period size: 52 Copynumber: 2.5 Consensus size: 52
94568648 ACGGATACCC
* * *
94568658 AGTGGCCTACACATAGTACAACCCTAAT-AGCCAAAGCTA-CCTTCTTCACAA
1 AGTGGCCTTCACATAGTACAACACTAATGA-CCAAAGCTATCCTTATTCACAA
* ** *
94568709 AGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTATTCACAA
1 AGTGGCCTTCACATAGTACAACACTAATGACCAAAGCTATCCTTATTCACAA
** *
94568761 AGTGGCCTTCTTATAGTACCACACT
1 AGTGGCCTTCACATAGTACAACACT
94568786 TGAGTCACTA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
51 32 0.48
52 34 0.52
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (52 bp):
AGTGGCCTTCACATAGTACAACACTAATGACCAAAGCTATCCTTATTCACAA
Found at i:94568777 original size:52 final size:51
Alignment explanation
Indices: 94568688--94568787 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 51
94568678 ACCCTAATAG
*
94568688 CCAAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGA
1 CCAAAGCTACCTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGA
* **
94568739 CCAAAGCTATCTTTATTCACAAAGTGGCCTTCTTATAGTACCACACTTG
1 CCAAAGCTA-CCTTATTCACAAAGTGGCCTTCACATAGTACCACACTTG
94568788 AGTCACTAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 9 0.20
52 35 0.80
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (51 bp):
CCAAAGCTACCTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGA
Found at i:94574330 original size:64 final size:63
Alignment explanation
Indices: 94574214--94574338 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 63
94574204 TCGGATTAGG
94574214 GTTACGAGGCATTACTGAACAAAACAAGTTCATCACAATCATTTATTACAATTCATGCACAGA
1 GTTACGAGGCATTACTGAACAAAACAAGTTCATCACAATCATTTATTACAATTCATGCACAGA
*
94574277 GTTACGAGGCATTACTGAACAAAACATAGTTCATCACAATCGTTTATTACAATTCATGCACA
1 GTTACGAGGCATTACTGAACAAAACA-AGTTCATCACAATCATTTATTACAATTCATGCACA
94574339 AAATTATAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
63 26 0.43
64 34 0.57
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (63 bp):
GTTACGAGGCATTACTGAACAAAACAAGTTCATCACAATCATTTATTACAATTCATGCACAGA
Found at i:94580539 original size:21 final size:22
Alignment explanation
Indices: 94580499--94580539 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
94580489 AAAAAACAAA
* *
94580499 AAGTAAATTGAAATAAAAAATG
1 AAGTAAACTGAAACAAAAAATG
94580521 AAGTAAACT-AAACAAAAAA
1 AAGTAAACTGAAACAAAAAA
94580540 GTATTAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (22 bp):
AAGTAAACTGAAACAAAAAATG
Found at i:94592579 original size:4 final size:4
Alignment explanation
Indices: 94592570--94592595 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
94592560 TTAAACTAAG
94592570 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
94592596 TAAAACTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:94597599 original size:24 final size:23
Alignment explanation
Indices: 94597475--94597668 Score: 74
Period size: 24 Copynumber: 8.2 Consensus size: 23
94597465 CTCTGATTAG
* * *
94597475 TATTGTTTT-AATATATAATATAC
1 TATTATTTTAAAT-TATCATATAT
* * *
94597498 TATTACTTTAAATCATCAT-TAG
1 TATTATTTTAAATTATCATATAT
*
94597520 TATTA-TTTAAACTTATCATACAT
1 TATTATTTTAAA-TTATCATATAT
*** * * *
94597543 TATGGCTTGAAATTTATTATATAC
1 TATTATTTTAAA-TTATCATATAT
94597567 TA-TAGTTTTAAACTTATCATATAT
1 TATTA-TTTTAAA-TTATCATATAT
* * * *
94597591 TATTATTTTAGATGCATTATGTAT
1 TATTATTTTAAAT-TATCATATAT
*
94597615 TCA-TATTTTTAAAGTTATCATATGT
1 T-ATTA-TTTTAAA-TTATCATATAT
* * *
94597640 TATTATTTCAAAATTATTATGTAT
1 TATTATTT-TAAATTATCATATAT
94597664 TATTA
1 TATTA
94597669 CTTAAAGATA
Statistics
Matches: 124, Mismatches: 35, Indels: 23
0.68 0.19 0.13
Matches are distributed among these distances:
21 6 0.05
22 13 0.10
23 16 0.13
24 67 0.54
25 21 0.17
26 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.51
Consensus pattern (23 bp):
TATTATTTTAAATTATCATATAT
Found at i:94602687 original size:15 final size:15
Alignment explanation
Indices: 94602667--94602699 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
94602657 AATCAAAGTC
94602667 AAAATGAAAAAGGAA
1 AAAATGAAAAAGGAA
*
94602682 AAAATGAAAAAGTAA
1 AAAATGAAAAAGGAA
94602697 AAA
1 AAA
94602700 TGGAGAGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (15 bp):
AAAATGAAAAAGGAA
Found at i:94602700 original size:14 final size:14
Alignment explanation
Indices: 94602661--94602701 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
94602651 AATCAAAATC
*
94602661 AAAGTCAAAATGAA
1 AAAGTAAAAATGAA
*
94602675 AAAGGAAAAAATGAA
1 AAA-GTAAAAATGAA
94602690 AAAGTAAAAATG
1 AAAGTAAAAATG
94602702 GAGAGGCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.68, C:0.02, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAGTAAAAATGAA
Found at i:94604282 original size:128 final size:128
Alignment explanation
Indices: 94604115--94604594 Score: 703
Period size: 128 Copynumber: 3.8 Consensus size: 128
94604105 GCCAGTAATT
* * * * * *
94604115 CTATCTCCCTGGGCAGCAGTGGAATAGATT-AAAGATTACAGATCTTGTCTCCATAAGCAGTAGC
1 CTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAA-ATTACAGATCTTGTCTCCCTAAGCAGTAGC
* *
94604179 GGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTC
65 GGAGCAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTC
* *
94604243 CTATGTCCCTGGTCAGTAGTGGAGTAGGTT-GAAGATTACAGATCTTGTCTCCCTAAGCAGTAGT
1 CTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAA-ATTACAGATCTTGTCTCCCTAAGCAGTAGC
* * * * *
94604307 GGAGTAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACAATAAGTT
65 GGAGCAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTC
94604371 CTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCG
1 CTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCG
* * * *
94604436 GAGCAGATCGAAGATGACAAATCTTATTTTCTAGTGTAAGGAAGCAGATTTAAGCCACAAGTC
66 GAGCAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTC
* * *
94604499 CTATGTCCATGGTCAGCAGTGGAGTAGGTTGGAAATTACAGGTCTCGTCTCCCTAAGCAGTAGCG
1 CTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCG
* * *
94604564 AAGCAGATCGAAGATGGCGAATCTTATCTTC
66 GAGCAGATCGAAGACGACGAATCTTATCTTC
94604595 CTGAGATTAT
Statistics
Matches: 318, Mismatches: 33, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
128 315 0.99
129 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (128 bp):
CTATGTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCG
GAGCAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTC
Found at i:94604942 original size:100 final size:100
Alignment explanation
Indices: 94604775--94605347 Score: 896
Period size: 100 Copynumber: 5.7 Consensus size: 100
94604765 CCCCAGGCGA
* * * *
94604775 TGCAGTGGAATAGATTAACGCCACAAC-GTGAAACTTGCTCCCCCGACATTGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
94604839 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
66 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
*
94604874 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGATATTACAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
94604939 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
66 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
*
94604974 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGATATTACAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
94605039 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
66 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
*
94605074 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGATATTACAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
* *
94605139 TAAAGCTACCACAGTGAATCTTACTTCTCGAGCGA
66 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
* * * ** *
94605174 TCCAGTGGAACAGATTAAAGCCACATCGGTGAATTTTGTTTCCCCGACATTACAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
* * * * *
94605239 TAAAGCTACAACAGCGAATCTTATTTCTCAAGTGA
66 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
* * * * * *
94605274 TGCAGTGGAACAGGTTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
*
94605339 TGAAGCTAC
66 TAAAGCTAC
94605348 AATGGCGAAT
Statistics
Matches: 447, Mismatches: 26, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
99 26 0.06
100 421 0.94
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (100 bp):
TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGACATTACAGTTAAAAAGAT
TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
Found at i:94605328 original size:50 final size:50
Alignment explanation
Indices: 94604775--94605349 Score: 327
Period size: 50 Copynumber: 11.5 Consensus size: 50
94604765 CCCCAGGCGA
* * * *
94604775 TGCAGTGGAATAGATTAACGCCACAAC-GTGAAACTTGCTCCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
** * * * * * **
94604824 TGCAGTTAAAAAGATTAAAGCTACCACAGTGAATCTTACTT-CTCAAGCGG
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGA-CAT
* * * * *
94604874 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGATAT
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
* ** * * * * * **
94604924 TACAGTTAAAAAGATTAAAGCTACCACAGTGAATCTTACTT-CTCAAGCGG
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGA-CAT
* * * * *
94604974 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGATAT
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
* ** * * * * * **
94605024 TACAGTTAAAAAGATTAAAGCTACCACAGTGAATCTTACTT-CTCAAGCGG
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGA-CAT
* * * * *
94605074 TGCAGTGGAACAGATTAACGCCACAACGGTGAACCTTGCTTCCCCGATAT
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
* ** * * * *
94605124 TACAGTTAAAAAGATTAAAGCTACCACAGTGAATCTTACTT-CTCGAGCGA-
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGA-C-AT
* * * * * *
94605174 TCCAGTGGAACAGATTAAAGCCACATCGGTGAATTTTGTTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
* ** * * ** ** **
94605224 TACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTCTCAAGTGA-
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTC-CCCGACAT
* * * *
94605274 TGCAGTGGAACAGGTTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
** * *
94605324 TGCAGTTCAAAAGATTGAAGCTACAA
1 TGCAGTGGAAAAGATTAAAGCCACAA
94605350 TGGCGAATCT
Statistics
Matches: 366, Mismatches: 147, Indels: 25
0.68 0.27 0.05
Matches are distributed among these distances:
49 38 0.10
50 311 0.85
51 17 0.05
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (50 bp):
TGCAGTGGAAAAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACAT
Found at i:94606750 original size:91 final size:91
Alignment explanation
Indices: 94606650--94606824 Score: 332
Period size: 91 Copynumber: 1.9 Consensus size: 91
94606640 CTTTTTACTT
*
94606650 CTGTTTTAATTCAAATTTAGTCCTTATCAGTGTATTTATTTATTTAATTGGTTCTTATTTTTATA
1 CTGTTTTAATTCAAATTTAGTCATTATCAGTGTATTTATTTATTTAATTGGTTCTTATTTTTATA
94606715 TATATTTATTTTTAAATCTTGCCTTA
66 TATATTTATTTTTAAATCTTGCCTTA
94606741 CTGTTTTAATTCAAATTTAGTCATTATCAGTGTATTTATTTATTTAATTGGTTCTTATTTTTATA
1 CTGTTTTAATTCAAATTTAGTCATTATCAGTGTATTTATTTATTTAATTGGTTCTTATTTTTATA
*
94606806 TATATTTGTTTTTAAATCT
66 TATATTTATTTTTAAATCT
94606825 AGCTTTACAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 82 1.00
ACGTcount: A:0.26, C:0.09, G:0.08, T:0.58
Consensus pattern (91 bp):
CTGTTTTAATTCAAATTTAGTCATTATCAGTGTATTTATTTATTTAATTGGTTCTTATTTTTATA
TATATTTATTTTTAAATCTTGCCTTA
Found at i:94606990 original size:24 final size:23
Alignment explanation
Indices: 94606866--94607059 Score: 76
Period size: 24 Copynumber: 8.2 Consensus size: 23
94606856 CTCTGATTAG
* * *
94606866 TATTGTTTT-AATATATAATATAC
1 TATTATTTTAAAT-TATCATATAT
* * *
94606889 TATTACTTTAAATCATCAT-TAG
1 TATTATTTTAAATTATCATATAT
*
94606911 TATTA-TTTAAACTTATCATACAT
1 TATTATTTTAAA-TTATCATATAT
* * * *
94606934 TA-TAGCTTGAAATTTATTATATAC
1 TATTA-TTTTAAA-TTATCATATAT
94606958 TA-TAGTTTTAAACTTATCATATAT
1 TATTA-TTTTAAA-TTATCATATAT
* * * *
94606982 TATTATTTTAGATGCATTATGTAT
1 TATTATTTTAAAT-TATCATATAT
*
94607006 T-TGTATTTTTAAAGTTATCATATGT
1 TAT-TA-TTTTAAA-TTATCATATAT
* * *
94607031 TATTATTTCAAAATTATTATGTAT
1 TATTATTT-TAAATTATCATATAT
94607055 TATTA
1 TATTA
94607060 CTTAAAGATA
Statistics
Matches: 128, Mismatches: 31, Indels: 23
0.70 0.17 0.13
Matches are distributed among these distances:
21 6 0.05
22 15 0.12
23 16 0.12
24 69 0.54
25 20 0.16
26 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.51
Consensus pattern (23 bp):
TATTATTTTAAATTATCATATAT
Found at i:94608957 original size:10 final size:10
Alignment explanation
Indices: 94608942--94608966 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
94608932 TCTTAGGCTA
94608942 AAAATAAATC
1 AAAATAAATC
94608952 AAAATAAATC
1 AAAATAAATC
94608962 AAAAT
1 AAAAT
94608967 TTTTGCCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:94610178 original size:12 final size:12
Alignment explanation
Indices: 94610163--94610188 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94610153 TATGATTTAC
94610163 AAACTTTATTAA
1 AAACTTTATTAA
94610175 AAACTTTATTAA
1 AAACTTTATTAA
94610187 AA
1 AA
94610189 GTAACATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (12 bp):
AAACTTTATTAA
Found at i:94615669 original size:21 final size:22
Alignment explanation
Indices: 94615645--94615689 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
94615635 TATTTAACCC
*
94615645 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
94615666 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
94615688 AA
1 AA
94615690 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:94617196 original size:20 final size:20
Alignment explanation
Indices: 94617141--94617196 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
94617131 GCAAAGTATC
*
94617141 AAATAAATAAAAATATGAAA
1 AAATAAATAAAAAAATGAAA
* *
94617161 ACATAAATCAACAAAAT-AAA
1 AAATAAAT-AAAAAAATGAAA
94617181 AAATAAATAAAGAAAA
1 AAATAAATAAA-AAAA
94617197 GAGAGCGCGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
19 2 0.07
20 21 0.72
21 6 0.21
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (20 bp):
AAATAAATAAAAAAATGAAA
Found at i:94617573 original size:23 final size:22
Alignment explanation
Indices: 94617526--94617571 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
94617516 AAATATTAGT
*
94617526 TAAAAAATAAATATGTGCATGTA
1 TAAAAAATAAATA-GTACATGTA
94617549 TAAAAAATAAATA-TACATGTA
1 TAAAAAATAAATAGTACATGTA
94617570 TA
1 TA
94617572 TATATAGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
23 13 0.59
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (22 bp):
TAAAAAATAAATAGTACATGTA
Found at i:94619182 original size:44 final size:44
Alignment explanation
Indices: 94619133--94619412 Score: 150
Period size: 44 Copynumber: 6.4 Consensus size: 44
94619123 CACTCCGCTA
* *
94619133 CAACTTTAGGGAGATAGGATTTGTTTATTTAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTTTATTTAGTCTGCTCCACTG
* * ** * *
94619177 CAACTTCAGGGAGATAAGACTAG---A-TGCGTTCTACT-CTCTG
1 CAACTTCAGGGAGATAAGATTTGTTTATTTAG-TCTGCTCCACTG
* * ** * * *
94619217 CAACTTTAGAGAGATAAGATCCAAGGTT-TTAATTC-GCTCCACTG
1 CAACTTCAGGGAGATAAGAT--TTGTTTATTTAGTCTGCTCCACTG
* * * * *
94619261 TAACTTCAGGGAGATAGGA-TT-ATCAGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTTTA--TTTAGTCTGCTCCACTG
* ** * *
94619305 CAACTTCAGGGAGATAAAATTTGCCATCTTTAGTTTGC-CTCACTG
1 CAACTTCAGGGAGATAAGATTTG-TTTATTTAGTCTGCTC-CACTG
* * *
94619350 CAACTTCA-GGAGGATAAGACTTGTTTACTTAGTCTGCTCCATTG
1 CAACTTCAGGGA-GATAAGATTTGTTTATTTAGTCTGCTCCACTG
*
94619394 CAACTTTAGGGAGATAAGA
1 CAACTTCAGGGAGATAAGA
94619413 CCAGAGAAAT
Statistics
Matches: 172, Mismatches: 45, Indels: 38
0.67 0.18 0.15
Matches are distributed among these distances:
40 24 0.14
41 6 0.03
42 2 0.01
43 7 0.04
44 96 0.56
45 37 0.22
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTTGTTTATTTAGTCTGCTCCACTG
Found at i:94619266 original size:128 final size:128
Alignment explanation
Indices: 94619070--94619321 Score: 312
Period size: 128 Copynumber: 2.0 Consensus size: 128
94619060 AGATGAATTT
* * * *
94619070 GATGCGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCATCATTTTAATCCACTCCGCTACA
1 GATGCGATCTACTCTACTGCAATTTCAGAGAGATAAGATCCAACATTTTAATCCACTCCACTACA
* * * *
94619135 ACTTTAGGGAGATAGGATTTGTTTA-TTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 ACTTCAGGGAGATAGGA-TT-ATCACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* ** * * **
94619199 GATGCGTTCTACTCT-CTGCAACTTT-AGAGAGATAAGATCCAAGGTTTTAATTCGCTCCACTGT
1 GATGCGATCTACTCTACTGCAA-TTTCAGAGAGATAAGATCCAACATTTTAATCCACTCCACTAC
94619262 AACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
65 AACTTCAGGGAGATAGGATTATCA-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
94619322 AATTTGCCAT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
126 2 0.02
127 2 0.02
128 85 0.81
129 16 0.15
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (128 bp):
GATGCGATCTACTCTACTGCAATTTCAGAGAGATAAGATCCAACATTTTAATCCACTCCACTACA
ACTTCAGGGAGATAGGATTATCACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:94619583 original size:88 final size:88
Alignment explanation
Indices: 94619480--94619703 Score: 378
Period size: 87 Copynumber: 2.5 Consensus size: 88
94619470 ATTGGGGTCA
* * *
94619480 TCGATCTGTTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTACTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTACAAC
*
94619545 CTAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* *
94619568 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTA-TTTTAACCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTACAAC
94619632 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
94619655 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTTATTTTTA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGC-TATTTTTA
94619704 CTAATCTGCT
Statistics
Matches: 127, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
87 80 0.63
88 42 0.33
89 5 0.04
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTACAAC
CCAGGGAGGCAAGGCTGGTGTCT
Found at i:94619599 original size:44 final size:44
Alignment explanation
Indices: 94619551--94619688 Score: 136
Period size: 44 Copynumber: 3.2 Consensus size: 44
94619541 CAACCTAGGG
94619551 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* * * ** * * * *** *
94619595 AGGCAAGATCTGCTAT-TTTAACCTGCTCCGCT-ACAACCCAGGG
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
*
94619638 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
94619682 AGGCAAG
1 AGGCAAG
94619689 ATCTGCTTAT
Statistics
Matches: 66, Mismatches: 25, Indels: 6
0.68 0.26 0.06
Matches are distributed among these distances:
42 5 0.08
43 25 0.38
44 31 0.47
45 5 0.08
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (44 bp):
AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
Found at i:94619664 original size:43 final size:44
Alignment explanation
Indices: 94619541--94619670 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 44
94619531 TGCTCTACTG
* *
94619541 CAACCTAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGT
1 CAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGA
*** * * * * ** * *
94619585 CAGTGCAGGAAGGCAAGATCTGCTAT-TTTAACCTGCTCCGCT-A
1 CAACCCAGGGAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGA
94619628 CAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
1 CAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
94619671 TCGGTGCAGG
Statistics
Matches: 59, Mismatches: 24, Indels: 6
0.66 0.27 0.07
Matches are distributed among these distances:
42 5 0.08
43 25 0.42
44 24 0.41
45 5 0.08
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (44 bp):
CAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGA
Found at i:94631663 original size:20 final size:20
Alignment explanation
Indices: 94631625--94631663 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94631615 TAACAGTATG
* *
94631625 AAAACATAAATCAACAAAAT
1 AAAAAATAAATAAACAAAAT
*
94631645 AAAAAATAAATAAAGAAAA
1 AAAAAATAAATAAACAAAA
94631664 GAGAGCGCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.13
Consensus pattern (20 bp):
AAAAAATAAATAAACAAAAT
Found at i:94632041 original size:23 final size:22
Alignment explanation
Indices: 94631994--94632039 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
94631984 AAATATTAGT
94631994 TAAAAAATAAATATGTACATGTA
1 TAAAAAATAAATA-GTACATGTA
94632017 TAAAAAATAAATA-TACATGTA
1 TAAAAAATAAATAGTACATGTA
94632038 TA
1 TA
94632040 TATATAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
23 13 0.57
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (22 bp):
TAAAAAATAAATAGTACATGTA
Found at i:94636144 original size:20 final size:19
Alignment explanation
Indices: 94636111--94636154 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
94636101 TGAAACAAAC
*
94636111 ACCCAACCAAACCAGAACTA
1 ACCCAACCAAACCA-AACCA
**
94636131 ACCCAACCCGACCAAACCA
1 ACCCAACCAAACCAAACCA
94636150 ACCCA
1 ACCCA
94636155 CCCTATCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.45, C:0.48, G:0.05, T:0.02
Consensus pattern (19 bp):
ACCCAACCAAACCAAACCA
Found at i:94636558 original size:19 final size:22
Alignment explanation
Indices: 94636534--94636579 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 22
94636524 ATTTCTCTAT
*
94636534 AAATAAA-TAAA-TAAGAAA-A
1 AAATAAATTAAATTAAAAAATA
94636553 AAATAAATTAAATTAAAAAATA
1 AAATAAATTAAATTAAAAAATA
94636575 AAATA
1 AAATA
94636580 TATACATACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
20 4 0.17
21 6 0.26
22 6 0.26
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (22 bp):
AAATAAATTAAATTAAAAAATA
Found at i:94642759 original size:15 final size:16
Alignment explanation
Indices: 94642728--94642761 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
94642718 TAAAAAATTA
*
94642728 TTATGCATTTCATTTT
1 TTATACATTTCATTTT
94642744 TTATACATTT-ATTTT
1 TTATACATTTCATTTT
94642759 TTA
1 TTA
94642762 ATATTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65
Consensus pattern (16 bp):
TTATACATTTCATTTT
Found at i:94652955 original size:17 final size:17
Alignment explanation
Indices: 94652933--94652965 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
94652923 TCCCAGATTT
94652933 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
94652950 TGATACCCATATCTTT
1 TGATACCCATATCTTT
94652966 GACTTTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:94657929 original size:49 final size:49
Alignment explanation
Indices: 94657857--94657952 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
94657847 GTGCGATCGA
* *
94657857 AAGATAAAAGAGAAGCTGAAGTGTGGTGAGAAATCCTAGATTTCTACGG
1 AAGATAAAAGAGAAACTGAAGTGTGGTGAGAAATCCTAGAGTTCTACGG
* *
94657906 AAGATAAAAGAGAAACTGGAGTGTGGTGAGAAATCCTATAGTTCTAC
1 AAGATAAAAGAGAAACTGAAGTGTGGTGAGAAATCCTAGAGTTCTAC
94657953 CTTTAGTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.40, C:0.10, G:0.27, T:0.23
Consensus pattern (49 bp):
AAGATAAAAGAGAAACTGAAGTGTGGTGAGAAATCCTAGAGTTCTACGG
Found at i:94661879 original size:17 final size:17
Alignment explanation
Indices: 94661857--94661897 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
94661847 TCTACGAAGT
94661857 CCTTCTCCACAAAATTA
1 CCTTCTCCACAAAATTA
94661874 CCTTCTCCACAAAATTA
1 CCTTCTCCACAAAATTA
94661891 CCATTCT
1 CC-TTCT
94661898 TATCTTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.32
Consensus pattern (17 bp):
CCTTCTCCACAAAATTA
Found at i:94665667 original size:30 final size:30
Alignment explanation
Indices: 94665631--94665692 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
94665621 CTTATAGAGT
94665631 ATGATGGTATTTCACAAATCTAATTTCCCC
1 ATGATGGTATTTCACAAATCTAATTTCCCC
94665661 ATGATGGTATTTCACAAATCTAATTTCCCC
1 ATGATGGTATTTCACAAATCTAATTTCCCC
94665691 AT
1 AT
94665693 AAAAGCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.37
Consensus pattern (30 bp):
ATGATGGTATTTCACAAATCTAATTTCCCC
Found at i:94667544 original size:50 final size:50
Alignment explanation
Indices: 94667342--94667584 Score: 261
Period size: 50 Copynumber: 4.7 Consensus size: 50
94667332 GGGAATGAGA
* * *
94667342 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTATGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* *
94667398 TCCCATGTAAGACCATGTATGGGACATGGCGTTCGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTATGGGACATGGCATTGGCACCGAGATGAGAGG
94667448 TCCCATGTAAGACCATGTATGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTATGGGACATGGCATTGGCACCGAGATGAGAGG
** * ** * * **
94667498 TCCCCCGTAAGACCATGTCTGGGACATGGCACGGGCAACGATATGAGAAC
1 TCCCATGTAAGACCATGTATGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * *
94667548 TCCAATGTAAGACCATATCTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTATGGGACATGGCATTGGCA
94667585 GTACAGAAAA
Statistics
Matches: 163, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
50 126 0.77
53 3 0.02
55 1 0.01
56 33 0.20
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTATGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:94671199 original size:50 final size:50
Alignment explanation
Indices: 94671144--94671273 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
94671134 CATTGAGATT
* * *
94671144 ATGAGAGGTCCCATGTAATACCATGTCTAGG-ACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCT-GGAACATGGCATGGGCACCGAG
** * *
94671194 ATGAGAGGTCCCCCGTAAGACCATGTCTGGAACATGGCATGGGCACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGAG
** * *
94671244 ATGAGAACTCTCATGTAAGACCATATCTGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGG
94671274 GATATGGTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
49 2 0.03
50 64 0.97
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGAG
Found at i:94678401 original size:5 final size:5
Alignment explanation
Indices: 94678393--94678425 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
94678383 ATTTCTTGTT
*
94678393 TTTCA TTTCA TTTCA TTTCA TTT-A TTTCC TTTC
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTC
94678426 TTATTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTCA
Found at i:94681888 original size:138 final size:138
Alignment explanation
Indices: 94681632--94682162 Score: 764
Period size: 138 Copynumber: 3.9 Consensus size: 138
94681622 AAAAATGAAT
* *
94681632 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAAATAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
* * * *
94681697 AACTA-TTTATATTAATAAATTCAGTAAAATATATACCATTAATACTTTGTATGAATCAAATTAA
66 AAC-AGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
94681761 TATATTAAA
130 TATATTAAA
94681770 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
* * * * *
94681835 TACAGTTTATAATAATAAAGTCGGTAAAATATATAAAATTAATATTTTTTATGAATCAAATTCAT
66 AACAGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
*
94681900 ATATTAAC
131 ATATTAAA
* * *
94681908 TATATTCTTTCCAACAA-AATATTAATTTTCATATCCTTTATATTTTGACAGAAATTAATTAATA
1 TATATTCTTTCCAA-AAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATA
** * * *
94681972 TAATTGTTTATATTAATAAATTCGGTAAAGTATATACAGTTAATATTTTGTATGAATCAAACTCA
65 TAACAGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCA
*
94682037 TATATTAAT
130 TATATTAAA
* * *
94682046 TATTATT-TTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTAACC-AATTTAATTAATA
1 TA-TATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATA
* * *
94682109 GAACTGTTTATATTCATAAATTCGGTAAAATATATACAATTAATATTTTGTATG
65 TAACAGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATG
94682163 TGTTCTCTAT
Statistics
Matches: 353, Mismatches: 36, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
137 64 0.18
138 283 0.80
139 6 0.02
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.44
Consensus pattern (138 bp):
TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
AACAGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATTAAA
Found at i:94690238 original size:102 final size:101
Alignment explanation
Indices: 94690063--94690402 Score: 338
Period size: 102 Copynumber: 3.4 Consensus size: 101
94690053 TATCGATGAA
* * *
94690063 CACGTGTGTAGTATGTGTGAAGGATACTACGTGTATCAATAAA-TAATGGTCACATGTGCAGTAC
1 CACGTGTGTAGTATGTGTGAAGGCTACTACGTGTATCAGTAAACT-ATGGTCACATGTGTAGTAC
*
94690127 TAAGTGAAGGCTACTATGTG-TACC-GAGAAGTTTTGAG-
65 TAAGTGAAGGCTACTATG-GATACCGGA-AAGCTTTG-GT
* * * *
94690164 CACGTGTGTAGTATTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTGGTAC
1 CACGTGTGTAGTA-TGTGTGAAGGCTACTACGTGTATCAGTAAACTATGGTCACATGTGTAGTAC
*
94690229 TAAGTGAAGGCTACGATGGATACCGGAAAGCTTTGGT
65 TAAGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
* * * * *
94690266 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACATGTGTAGTA
1 CACGTGTGTAGTA-TGTGTGAAGGCTACTACGTGTATCAGT-AAACTATGGTCACATGTGTAGTA
* * * * * *
94690329 CTATGTGAAGGCTACTACGTGA-ACTGTAAAAC--TGAT
64 CTAAGTGAAGGCTACTATG-GATACCGGAAAGCTTTGGT
* *
94690365 CACGTGTGTAGTACTATGTGAAGGCTACTACATGTATC
1 CACGTGTGTAGTA-TGTGTGAAGGCTACTACGTGTATC
94690403 GAATGACAAT
Statistics
Matches: 203, Mismatches: 28, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
99 35 0.17
100 2 0.01
101 56 0.28
102 107 0.53
103 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTATGTGTGAAGGCTACTACGTGTATCAGTAAACTATGGTCACATGTGTAGTACT
AAGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
Found at i:94690384 original size:49 final size:50
Alignment explanation
Indices: 94690063--94690395 Score: 246
Period size: 51 Copynumber: 6.6 Consensus size: 50
94690053 TATCGATGAA
* * * ** * *
94690063 CACGTGTGTAGTA-TGTGTGAAGGATACTACGTGTATCAATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAA-ACTTGAT
* * * * * ** *
94690113 CACATGTGCAGTACTAAGTGAAGGCTACTATGTGTACCG-AGAAGTTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AA-ACTTGAT
* * * * * *
94690164 CACGTGTGTAGTATTGTGTGAAAGCTACTACGTGTATCGGT-AAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAAACT-TGAT
* * * * * * * * *
94690215 TACATGTGTGGTACTAAGTGAAGGCTACGATG-GATACCGGAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGA-ACCGTAAAAC-TTGAT
* *
94690266 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
94690316 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
94690365 CACGTGTGTAGTACTATGTGAAGGCTACTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTAC
94690396 ATGTATCGAA
Statistics
Matches: 215, Mismatches: 58, Indels: 21
0.73 0.20 0.07
Matches are distributed among these distances:
49 36 0.17
50 63 0.29
51 111 0.52
52 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:94697866 original size:102 final size:102
Alignment explanation
Indices: 94697617--94697956 Score: 338
Period size: 102 Copynumber: 3.4 Consensus size: 102
94697607 TATCAATGAA
* * * *
94697617 CACGTTTGTAGTACTGTGTGAAGGCTACTACATGTATCAATAAA-TAATGGTCACATGTCTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGTAAACT-ATGGTCACATGTCTAGTA
* * *
94697681 CTAAGTGAAGGCTACTATGTG-TACCGAGAAGTTTTGAG-
65 CTAAGTGAAGGCTACTATG-GATACCAAAAAGCTTTG-GT
* * * * * * *
94697719 CACGTGTGTAGTACTGTGTGAAAGCTACTATGTGTATCGGTAAACTATGGTTACATGTTTGGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGTAAACTATGGTCACATGTCTAGTAC
94697784 TAAGTGAAGGCTACTATGGATACCAAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGGATACCAAAAAGCTTTGGT
* * * * * *
94697821 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGT-AAACTATGGTCACATGTCTAGTA
* * * * * *
94697884 CTATGTGAAGGCTATTACGTA-ACTATAAAA-C--TGAT
65 CTAAGTGAAGGCTACTATGGATACCA-AAAAGCTTTGGT
94697919 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
94697957 GAATGATAAA
Statistics
Matches: 201, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
98 36 0.18
99 2 0.01
100 4 0.02
101 39 0.19
102 119 0.59
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGTAAACTATGGTCACATGTCTAGTAC
TAAGTGAAGGCTACTATGGATACCAAAAAGCTTTGGT
Found at i:94697938 original size:48 final size:50
Alignment explanation
Indices: 94697617--94697952 Score: 234
Period size: 51 Copynumber: 6.7 Consensus size: 50
94697607 TATCAATGAA
* * * * * * *
94697617 CACGTTTGTAGTACTGTGTGAAGGCTACTACATGTATCAATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCATAAA-ACTTGAT
* * * * * * *** *
94697668 CACATGTCTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACC-ATAAAACTTGAT
* * * * ** *
94697719 CACGTGTGTAGTACTGTGTGAAAGCTACTATGTGTATCGGT-AAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCATAAAACT-TGAT
* * * * * * *
94697770 TACATGTTTGGTACTAAGTGAAGGCTACTATG-GATACCA-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGA-ACCATAAAA-C-TTGAT
* * *
94697821 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCATAAAACTTGAT
* *
94697871 CACGTGTGTAGTACTATGTGAAGGCTATTACGT-AACTATAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCATAAAACTTGAT
94697919 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
94697953 TATCGAATGA
Statistics
Matches: 217, Mismatches: 57, Indels: 24
0.73 0.19 0.08
Matches are distributed among these distances:
48 36 0.17
49 9 0.04
50 43 0.20
51 121 0.56
52 8 0.04
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCATAAAACTTGAT
Found at i:94708128 original size:138 final size:135
Alignment explanation
Indices: 94707880--94708243 Score: 566
Period size: 138 Copynumber: 2.6 Consensus size: 135
94707870 TAGATAAAAG
* *
94707880 AATTATATTATTTCAAAAAGAATATTAATGTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATT-TTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA-CGAAATTAATTAA
* * *
94707945 TATAACTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATATTTTTTATTAATTAAATT
64 TATAACTGTTTATATTAATAAA-TTCGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
94708010 CATATATT
128 CATATATT
94708018 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATT-TTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA-CGAAATTAATTAA
* * *
94708083 TATAACTGTTTATAGTACTAAATTCGATAAAATATATACGATTAATATTTTGTATGAATCAAATT
64 TATAACTGTTTATATTAATAAATTCG-TAAAATATATACAATTAATATTTTGTATGAATCAAATT
94708148 CATATATT
128 CATATATT
* * *
94708156 AACTATATTTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACTGAAATTAATTAAT
1 AATTATATTTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGAC-GAAATTAATTAAT
94708221 ATAACTGTTTATATTAATAAATT
65 ATAACTGTTTATATTAATAAATT
94708244 ACTATTTTGT
Statistics
Matches: 209, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
136 1 0.00
137 77 0.37
138 131 0.63
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (135 bp):
AATTATATTTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACGAAATTAATTAATA
TAACTGTTTATATTAATAAATTCGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:94708266 original size:118 final size:119
Alignment explanation
Indices: 94708123--94708367 Score: 359
Period size: 119 Copynumber: 2.1 Consensus size: 119
94708113 AATATATACG
*
94708123 ATTAATATTTTGTATGAATCAAATTCATATATTAACTATATT-TTTCCAAAAGAATATTAATTTC
1 ATTAATATTTTGTATGAATCAAATTCAGATATTAACTATATTCTTTCCAAAAGAATATTAATTTC
* *
94708187 CATGTCATTTATATTTTGACT-GAAATTAATTAATATAACTGTTTATATTAATAA
66 CATGTCATTTATAGTTTGACTAG-AATTAATTAACATAACTGTTTATATTAATAA
* * * ** *
94708241 ATTACTATTTTGTATGAATCAAATTCAGATATTAATTATATTCTTTCTAAAATCATATTAATTTT
1 ATTAATATTTTGTATGAATCAAATTCAGATATTAACTATATTCTTTCCAAAAGAATATTAATTTC
* *
94708306 CATGTCTTTTATAGTTTGACTAGAATTAATTAACATCACTGTTTATATTAATAA
66 CATGTCATTTATAGTTTGACTAGAATTAATTAACATAACTGTTTATATTAATAA
94708360 ATTCAATA
1 ATT-AATA
94708368 AAATATATAC
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 39 0.35
119 69 0.62
120 4 0.04
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.46
Consensus pattern (119 bp):
ATTAATATTTTGTATGAATCAAATTCAGATATTAACTATATTCTTTCCAAAAGAATATTAATTTC
CATGTCATTTATAGTTTGACTAGAATTAATTAACATAACTGTTTATATTAATAA
Found at i:94727479 original size:26 final size:26
Alignment explanation
Indices: 94727443--94727494 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
94727433 AAAACAAGAA
*
94727443 TGAACCCGTAACAAAGGTTAAGGACC
1 TGAACCAGTAACAAAGGTTAAGGACC
94727469 TGAACCAGTAACAAAGGTTAAGGACC
1 TGAACCAGTAACAAAGGTTAAGGACC
94727495 CGATTCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (26 bp):
TGAACCAGTAACAAAGGTTAAGGACC
Found at i:94738972 original size:84 final size:84
Alignment explanation
Indices: 94738822--94739313 Score: 813
Period size: 84 Copynumber: 5.8 Consensus size: 84
94738812 ATCATTACAT
* * ** * * * *
94738822 AGTGGAATCAACACTTAGCAACCACCTCATGTTCAAAGGATCCCGGTGGAATCAGCACTTAGCAA
1 AGTGGAATCAGCACTTAGCAACCACCTTATAATC-AATGAT-ACGG-GAAATCAGCACATAGCAA
94738887 CCCCTTTCACAATCAAGGATAC
63 CCCCTTTCACAATCAAGGATAC
* * * *
94738909 GGTGGAATCAGCACTTAGCAAGCACCCTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
1 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
94738974 CTTTCACAATCAAGGATAC
66 CTTTCACAATCAAGGATAC
94738993 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
1 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
94739058 CTTTCACAATCAAGGATAC
66 CTTTCACAATCAAGGATAC
94739077 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
1 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
94739142 CTTTCACAATCAAGGATAC
66 CTTTCACAATCAAGGATAC
94739161 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
1 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
94739226 CTTTCACAATCAAGGATAC
66 CTTTCACAATCAAGGATAC
* * * *
94739245 GGTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATACGGGGAATCAGTACATAGCAACCC
1 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
94739310 CTTT
66 CTTT
94739314 TTGATCAATG
Statistics
Matches: 387, Mismatches: 18, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
84 352 0.91
85 3 0.01
86 5 0.01
87 27 0.07
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (84 bp):
AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
CTTTCACAATCAAGGATAC
Found at i:94742434 original size:9 final size:9
Alignment explanation
Indices: 94742422--94742447 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
94742412 GTAACTTCAC
94742422 TTTCAACTT
1 TTTCAACTT
94742431 TTTCAACTT
1 TTTCAACTT
94742440 TTTCAACT
1 TTTCAACT
94742448 CTGTATGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (9 bp):
TTTCAACTT
Found at i:94747066 original size:22 final size:22
Alignment explanation
Indices: 94747040--94747083 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
94747030 AAAGATATTT
*
94747040 CAAACTATTCCATGCAATTCAA
1 CAAACTATTCCAAGCAATTCAA
*
94747062 CAAACTATTTCAAGCAATTCAA
1 CAAACTATTCCAAGCAATTCAA
94747084 GTATCCAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (22 bp):
CAAACTATTCCAAGCAATTCAA
Found at i:94766799 original size:98 final size:98
Alignment explanation
Indices: 94766625--94766821 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
94766615 GTACAATAAA
* *
94766625 ACTTTAAAAGAATATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
94766690 CCTCTAGAATCCCAAACTCGGAATATTTCATTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCATTT
94766723 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
94766788 CCTTTAAAATCCCAAACTCGAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCATTT
94766821 A
1 A
94766822 TAATTTTTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGAAATATTTCATTT
Found at i:94769197 original size:173 final size:175
Alignment explanation
Indices: 94768829--94769286 Score: 520
Period size: 173 Copynumber: 2.6 Consensus size: 175
94768819 TGGTGTCTCG
* * ** * * * *
94768829 ATCCACTCCACTGCAACGTCGGGGAGATAGGATTGGTATG-TTTAGTCTATCCCACAGCAATTTC
1 ATCCACTCCACTGCAACTTCAGGGAGATAGGATT-GTCGGCTTTAATCTATTCC-CTGCAACTTC
* * ** *
94768893 AAGGG-GATAAGACTTGCTT-TCTTGAGTCTATTCCACTGCAACTTCAGGGAGATTAAGACCCGA
64 -AGGGAGATAAGATTTGCTTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATTAAGACCAGA
* *
94768956 TGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTATA
128 TATGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTATA
* *
94769004 ATTCACTCCACTACAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTATTCCGCTGCAACTTCA
1 ATCCACTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTATTCC-CTGCAACTTCA
* * * *
94769069 GGGAGATAGGATTTGCTTAGCTT-AGTCTGCTCCACTGCAACTTTAGGGAGA-TAAGACTAGATA
65 GGGAGATAAGATTTGCTTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATTAAGACCAGATA
* *
94769132 TGATCTACTCT-CTACATCTTCAGAGAGATAAGATCTGA-GGTTTTA
130 TGATCTACTCTACTACAACTTCAGAGAGATAAGATCT-ATGGTTATA
* * ** * *
94769177 ATCCACTCCACTGTAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCATCGCAACTTTA
1 ATCCACTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTATTCCCT-GCAACTTCA
*
94769242 GGGAGATAAGATTTGC-CATCTTCAGTCTGC-CTCACTGCAACTTCA
65 GGGAGATAAGATTTGCTTATCTTCAGTCTGCTC-CACTGCAACTTCA
94769287 AGAGGATAAG
Statistics
Matches: 241, Mismatches: 35, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
172 6 0.02
173 118 0.49
174 28 0.12
175 86 0.36
176 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (175 bp):
ATCCACTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTATTCCCTGCAACTTCAG
GGAGATAAGATTTGCTTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATTAAGACCAGATAT
GATCTACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTATA
Found at i:94769221 original size:44 final size:43
Alignment explanation
Indices: 94768960--94769254 Score: 194
Period size: 44 Copynumber: 6.8 Consensus size: 43
94768950 ACCCGATGTG
* *
94768960 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGG-TTATA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGAT-TATGGCTT-TA
* * *
94769004 AT-TCACTCCACTACAACTTCAGGGAGATAGGATTGTCGGCTTTA
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATTAT-GGCTTTA
* * *
94769048 ATCTATTCCGCTGCAACTTCAGGGAGATAGGATT-T-GCTTAGCTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTATGGC-T---TTA
* * * * * * *
94769093 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTA--GATATG
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTATGGCTTTA
* * * * *
94769134 ATCTACT-CTCTACATCTTCAGAGAGATAAGATCTGA-GGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGAT-T-ATGGCTTTA
* * *
94769177 ATCCACTCCACTGTAACTTCAGGGAGATAGGATTATCGGCTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTAT-GGCTTTA
* *
94769221 ATCTGCTCCA-TCGCAACTTTAGGGAGATAAGATT
1 ATCTACTCCACT-GCAACTTCAGGGAGATAAGATT
94769255 TGCCATCTTC
Statistics
Matches: 193, Mismatches: 42, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
40 19 0.10
41 9 0.05
42 3 0.02
43 15 0.08
44 113 0.59
45 34 0.18
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (43 bp):
ATCTACTCCACTGCAACTTCAGGGAGATAAGATTATGGCTTTA
Found at i:94769283 original size:45 final size:45
Alignment explanation
Indices: 94769182--94769340 Score: 123
Period size: 45 Copynumber: 3.6 Consensus size: 45
94769172 TTTTAATCCA
* * ** * *
94769182 CTCCACTGTAACTTCAGGGAGATAGGA-TTATC-GGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATGC-TTAGTCTG
* *
94769226 CTCCA-TCGCAACTTTAGGGAGATAAGATTTGCCAT-CTTCAGTCTG
1 CTCCACT-GCAACTTCAGGGAGATAAGACTTGCCATGCTT-AGTCTG
* **
94769271 C-CTCACTGCAACTTCA-AGAGGATAAGACTTGCTTTGCTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCATGCTTAGTCTG
*
94769316 TTCCACTGCAACTTCAGGGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAA
94769341 AACTAGATGC
Statistics
Matches: 91, Mismatches: 14, Indels: 19
0.73 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 27 0.30
45 56 0.62
46 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATGCTTAGTCTG
Found at i:94769523 original size:45 final size:44
Alignment explanation
Indices: 94769418--94769539 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 44
94769408 TCGGCTTTAA
* *
94769418 TCTGCTCCACCGCAACTTCAGGGGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGGATAAGACTTGCCATCTTCAG
* **
94769462 CCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTT-AG
1 TCTGCTC-CACTGCAACTTCAGG-GGATAAGACTTGCCAT-CTTCAG
*
94769507 TCTGCTCCACTACAACTTCAGGGAGATAAGACT
1 TCTGCTCCACTGCAACTTCAGGG-GATAAGACT
94769540 AGATGCGATC
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.02
44 19 0.29
45 42 0.64
46 4 0.06
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGGATAAGACTTGCCATCTTCAG
Found at i:94781093 original size:98 final size:98
Alignment explanation
Indices: 94780913--94781109 Score: 333
Period size: 98 Copynumber: 2.0 Consensus size: 98
94780903 GTACAATAAA
* *
94780913 ACTTTAAAAGAATATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
94780978 CCTCTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCTCAAACTCGGAATATTTCCTTT
*
94781011 ACTTTAAAAGAACATCCACTTATCCAAGATTTATGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
94781076 CCTTTAAAATC-CTAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCTC-AAACTCGGAATATTTCCTTT
94781109 A
1 A
94781110 TAATTTTTAA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
97 1 0.01
98 92 0.99
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCTCAAACTCGGAATATTTCCTTT
Found at i:94786912 original size:23 final size:24
Alignment explanation
Indices: 94786866--94786912 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
94786856 TACATTAATA
* *
94786866 AGAGTTTGACTAGGAAAAATAATC
1 AGAGTTTAACTAGGAAAAAAAATC
94786890 AGAGTTTAACTA-GAAAAAAAATC
1 AGAGTTTAACTAGGAAAAAAAATC
94786913 GAGAAAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.23
Consensus pattern (24 bp):
AGAGTTTAACTAGGAAAAAAAATC
Found at i:94787911 original size:86 final size:86
Alignment explanation
Indices: 94787800--94788060 Score: 513
Period size: 86 Copynumber: 3.0 Consensus size: 86
94787790 ATAATAACAA
94787800 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
1 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
94787865 CATACAAATAGAAAGTGAAGC
66 CATACAAATAGAAAGTGAAGC
94787886 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
1 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
94787951 CATACAAATAGAAAGTGAAGC
66 CATACAAATAGAAAGTGAAGC
*
94787972 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAATAA
1 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
94788037 CATACAAATAGAAAGTGAAGC
66 CATACAAATAGAAAGTGAAGC
94788058 ATT
1 ATT
94788061 CATATTAGAC
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 174 1.00
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.32
Consensus pattern (86 bp):
ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
CATACAAATAGAAAGTGAAGC
Found at i:94788222 original size:16 final size:18
Alignment explanation
Indices: 94788201--94788239 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
94788191 TAGCTCAAAC
*
94788201 TATAAAAACT-TTATT-A
1 TATAAAAAATATTATTGA
94788217 TATAAAAAATATTATTGA
1 TATAAAAAATATTATTGA
94788235 TATAA
1 TATAA
94788240 TTTTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
17 5 0.25
18 6 0.30
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
TATAAAAAATATTATTGA
Found at i:94788508 original size:24 final size:24
Alignment explanation
Indices: 94788481--94788528 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
94788471 CTTACCAATT
*
94788481 CTAATAACCTTCC-TTTGTTGAATG
1 CTAATAA-CTTCCATTTGTCGAATG
94788505 CTAATAACTTCCATTTGTCGAATG
1 CTAATAACTTCCATTTGTCGAATG
94788529 TTATTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (24 bp):
CTAATAACTTCCATTTGTCGAATG
Found at i:94795960 original size:44 final size:43
Alignment explanation
Indices: 94795860--94795961 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 43
94795850 GTTAGTTCAT
* * *
94795860 TTAAATATGATTCATATGAATTTGACATGGATAACCATTATAC
1 TTAAACATGATTCATAGGAATTTAACATGGATAACCATTATAC
* * * **
94795903 TTGAGCATAATTCATAGGTAATTTAACATGGATAGTCATTATAC
1 TTAAACATGATTCATAGG-AATTTAACATGGATAACCATTATAC
94795947 TTAAACATGATTCAT
1 TTAAACATGATTCAT
94795962 TTGGATTTGT
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
43 13 0.28
44 34 0.72
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (43 bp):
TTAAACATGATTCATAGGAATTTAACATGGATAACCATTATAC
Found at i:94796239 original size:26 final size:25
Alignment explanation
Indices: 94796176--94796245 Score: 88
Period size: 26 Copynumber: 2.8 Consensus size: 25
94796166 CCTTTACATA
*
94796176 TATGCTCACACGAGTTATGAATAAG
1 TATGCTCACACGAGCTATGAATAAG
**
94796201 TATGCTCACACGAGCTATGAAATGGG
1 TATGCTCACACGAGCTATG-AATAAG
94796227 CT-TGCTCACACGAGCTATG
1 -TATGCTCACACGAGCTATG
94796246 GGTCAGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 18 0.45
26 21 0.52
27 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
TATGCTCACACGAGCTATGAATAAG
Found at i:94797875 original size:18 final size:18
Alignment explanation
Indices: 94797849--94797889 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
94797839 CCCTTATCAG
94797849 TACCATTAGAGAATTCTT
1 TACCATTAGAGAATTCTT
* * *
94797867 TACCGTTAGATATTTCTT
1 TACCATTAGAGAATTCTT
94797885 TACCA
1 TACCA
94797890 ATGGCGGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (18 bp):
TACCATTAGAGAATTCTT
Found at i:94802867 original size:26 final size:26
Alignment explanation
Indices: 94802831--94802885 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
94802821 GCGTACATGT
94802831 TTTGGGGTTTGATGTCATTTCATCCA
1 TTTGGGGTTTGATGTCATTTCATCCA
94802857 TTTGGGGTTTGATGTCATTTCATCCA
1 TTTGGGGTTTGATGTCATTTCATCCA
94802883 TTT
1 TTT
94802886 TGGTTGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49
Consensus pattern (26 bp):
TTTGGGGTTTGATGTCATTTCATCCA
Found at i:94806127 original size:22 final size:23
Alignment explanation
Indices: 94806099--94806141 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
94806089 GCAATCGCAT
94806099 ATATGA-TATGTAATCTTAGAAG
1 ATATGATTATGTAATCTTAGAAG
*
94806121 ATATGATTTTGTAATCTTAGA
1 ATATGATTATGTAATCTTAGA
94806142 GATTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGATTATGTAATCTTAGAAG
Found at i:94806151 original size:22 final size:23
Alignment explanation
Indices: 94806107--94806151 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
94806097 ATATATGATA
*
94806107 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
94806130 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
94806152 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:94811264 original size:22 final size:23
Alignment explanation
Indices: 94811237--94811279 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
94811227 GCAATTGCAT
94811237 ATATGA-TATGTAATCTTAGAAG
1 ATATGATTATGTAATCTTAGAAG
*
94811259 ATATGATTTTGTAATCTTAGA
1 ATATGATTATGTAATCTTAGA
94811280 GATTTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGATTATGTAATCTTAGAAG
Found at i:94816609 original size:15 final size:15
Alignment explanation
Indices: 94816589--94816617 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94816579 CTTTTGTGGT
94816589 TTCTGTTTTGTATGG
1 TTCTGTTTTGTATGG
94816604 TTCTGTTTTGTATG
1 TTCTGTTTTGTATG
94816618 TTTGTATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.24, T:0.62
Consensus pattern (15 bp):
TTCTGTTTTGTATGG
Found at i:94817752 original size:29 final size:29
Alignment explanation
Indices: 94817710--94817781 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
94817700 ATTGTTGCAA
94817710 TGGAAATTGTCTGCAGTTTTCAATGAAAC
1 TGGAAATTGTCTGCAGTTTTCAATGAAAC
*
94817739 TGGAAATTGTCTGCTGTTTTCAATGAAAC
1 TGGAAATTGTCTGCAGTTTTCAATGAAAC
94817768 TGGAAATTGT-TGCA
1 TGGAAATTGTCTGCA
94817782 TTTGTTTAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 3 0.07
29 38 0.93
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.36
Consensus pattern (29 bp):
TGGAAATTGTCTGCAGTTTTCAATGAAAC
Found at i:94818143 original size:21 final size:21
Alignment explanation
Indices: 94818092--94818135 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
94818082 ACTTTTGGAA
94818092 TTTAC-AATAGGTTATATGTT
1 TTTACTAATAGGTTATATGTT
94818112 TTTACTAATAGGTTATATGTT
1 TTTACTAATAGGTTATATGTT
94818133 TTT
1 TTT
94818136 TTTTATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.27, C:0.05, G:0.14, T:0.55
Consensus pattern (21 bp):
TTTACTAATAGGTTATATGTT
Found at i:94818284 original size:13 final size:13
Alignment explanation
Indices: 94818266--94818290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94818256 TTTATTAGTG
94818266 AAAGAGTACATAT
1 AAAGAGTACATAT
94818279 AAAGAGTACATA
1 AAAGAGTACATA
94818291 CAAATTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAGAGTACATAT
Found at i:94818983 original size:15 final size:15
Alignment explanation
Indices: 94818963--94818998 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
94818953 CAAATAACAA
94818963 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
94818978 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
94818993 CAATTA
1 CAATTA
94818999 TACATATACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (15 bp):
CAATTAATTTTAGGT
Found at i:94823498 original size:18 final size:17
Alignment explanation
Indices: 94823470--94823504 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
94823460 ATTATTAAGA
*
94823470 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
94823487 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
94823505 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:94823596 original size:119 final size:120
Alignment explanation
Indices: 94823349--94823645 Score: 524
Period size: 119 Copynumber: 2.5 Consensus size: 120
94823339 AATTATTTTA
* * *
94823349 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATGATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
94823414 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
94823469 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
94823534 ATAGT-TCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
94823588 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
94823646 ATGATTAAAT
Statistics
Matches: 170, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
119 99 0.58
120 71 0.42
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:94823623 original size:16 final size:16
Alignment explanation
Indices: 94823602--94823643 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
94823592 TTATTAAATT
*
94823602 ATATATTTTAATTATA
1 ATATATTTTAATAATA
94823618 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
94823633 AT-TATGTTTAA
1 ATATAT-TTTAA
94823644 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:94823628 original size:15 final size:15
Alignment explanation
Indices: 94823593--94823634 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
94823583 TTAAGAATTT
*
94823593 TATTAAATTAT-ATA
1 TATTTAATTATAATA
94823607 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
94823621 TATTTAATAATAAT
1 TATTTAATTATAAT
94823635 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:94823868 original size:45 final size:44
Alignment explanation
Indices: 94823788--94823878 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 44
94823778 ACCTCTATTC
94823788 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
94823832 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
94823877 CA
1 CA
94823879 CCTCTATTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.37
45 26 0.60
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:94823882 original size:16 final size:16
Alignment explanation
Indices: 94823857--94823910 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
94823847 TTGATTTGCT
*
94823857 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
94823873 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
94823889 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
94823905 AATACA
1 ATTACA
94823911 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.26, C:0.35, G:0.04, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:94826794 original size:21 final size:21
Alignment explanation
Indices: 94826768--94826814 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
94826758 GTGGCCTAAA
*
94826768 CGTAAAGGAACGTCTTTGTGG
1 CGTAAAGGAACGCCTTTGTGG
***
94826789 CGTAAAGGGGTGCCTTTGTGG
1 CGTAAAGGAACGCCTTTGTGG
94826810 CGTAA
1 CGTAA
94826815 TCGTAAAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (21 bp):
CGTAAAGGAACGCCTTTGTGG
Found at i:94826819 original size:27 final size:27
Alignment explanation
Indices: 94826789--94826867 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
94826779 GTCTTTGTGG
** *
94826789 CGTAAAGGGGTGCCTTTGTGGCGTAAT
1 CGTAAAGGAATGCCTTTGTGGCATAAT
*
94826816 CGTAAAGGAATGCCTCTGTGGCATAAT
1 CGTAAAGGAATGCCTTTGTGGCATAAT
*
94826843 TGT-AAGGAAATGCCTTTGTGGCATA
1 CGTAAAGG-AATGCCTTTGTGGCATA
94826868 TTATGAATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.09
27 41 0.91
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.29
Consensus pattern (27 bp):
CGTAAAGGAATGCCTTTGTGGCATAAT
Found at i:94828599 original size:30 final size:30
Alignment explanation
Indices: 94828564--94828620 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
94828554 AAAAAATTAA
*
94828564 AAAAATAAATAAAAATATT-TTTTTAAAAAT
1 AAAAAT-AATAAAAAAATTATTTTTAAAAAT
*
94828594 AAAAATTATAAAAAAATTATTTTTAAA
1 AAAAATAATAAAAAAATTATTTTTAAA
94828621 TTTTTTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (30 bp):
AAAAATAATAAAAAAATTATTTTTAAAAAT
Found at i:94828615 original size:32 final size:33
Alignment explanation
Indices: 94828555--94828617 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
94828545 TTAGAATTTA
94828555 AAAAATTAAAAAAATAAATAAAAATATTTTTTT
1 AAAAATTAAAAAAATAAATAAAAATATTTTTTT
* *
94828588 AAAAA-TAAAAATTATAAA-AAAATTATTTTT
1 AAAAATTAAAAA-AATAAATAAAAATATTTTT
94828618 AAATTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (33 bp):
AAAAATTAAAAAAATAAATAAAAATATTTTTTT
Found at i:94829042 original size:16 final size:16
Alignment explanation
Indices: 94829023--94829054 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
94829013 TAGCCTTGAA
94829023 CTTGTTTATTTATACT
1 CTTGTTTATTTATACT
94829039 CTTGTTTATTTATACT
1 CTTGTTTATTTATACT
94829055 TAGTTGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.62
Consensus pattern (16 bp):
CTTGTTTATTTATACT
Found at i:94832333 original size:18 final size:17
Alignment explanation
Indices: 94832306--94832365 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
94832296 TTCAGGAAAT
*
94832306 TTTATTATTTTTTATTA
1 TTTATAATTTTTTATTA
*
94832323 TTTCATAATTTTTTAATA
1 TTT-ATAATTTTTTATTA
*
94832341 TGTT-TAAATTTTTATT-
1 T-TTATAATTTTTTATTA
94832357 TTTATAATT
1 TTTATAATT
94832366 GGTATGAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 2 0.06
16 5 0.14
17 13 0.37
18 13 0.37
19 2 0.06
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTATAATTTTTTATTA
Found at i:94832615 original size:26 final size:25
Alignment explanation
Indices: 94832564--94832615 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
94832554 TTGTTGGTGG
*
94832564 TTTTTGTCAAAAATATAACATTTTA
1 TTTTTGTCAAAAATATAACATGTTA
* * *
94832589 TTTTCTGTCAATAATGTACCATGTTA
1 TTTT-TGTCAAAAATATAACATGTTA
94832615 T
1 T
94832616 ATGATGACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.48
Consensus pattern (25 bp):
TTTTTGTCAAAAATATAACATGTTA
Found at i:94837535 original size:39 final size:40
Alignment explanation
Indices: 94837491--94837587 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 40
94837481 CACTTTTAAA
*
94837491 CATATATCACAATACTCATATAATCACAT-AACATTCAAG
1 CATATATCACAATACTCAGATAATCACATAAACATTCAAG
*
94837530 CATATATCACTAGT-CTCAGATAATCACATAAACATTCAAG
1 CATATATCAC-AATACTCAGATAATCACATAAACATTCAAG
*
94837570 CATATATCATAATACTCA
1 CATATATCACAATACTCA
94837588 AAAACATATT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
39 26 0.51
40 25 0.49
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.29
Consensus pattern (40 bp):
CATATATCACAATACTCAGATAATCACATAAACATTCAAG
Found at i:94842311 original size:15 final size:17
Alignment explanation
Indices: 94842281--94842313 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
94842271 TTAAGCATAT
94842281 ATCACATTACAAATTTA
1 ATCACATTACAAATTTA
94842298 ATCACA-TA-AAATTTA
1 ATCACATTACAAATTTA
94842313 A
1 A
94842314 GCATATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (17 bp):
ATCACATTACAAATTTA
Found at i:94842324 original size:39 final size:39
Alignment explanation
Indices: 94842270--94842488 Score: 287
Period size: 39 Copynumber: 5.6 Consensus size: 39
94842260 TATATTCACT
* ** * *
94842270 TTTAAGCATATATCACATTACAAATTTAATCACATAAAA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
94842309 TTTAAGCATATATCACAATATTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
94842348 TTCAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * * *
94842387 TTCAAGCATATATCATAACACTCATATAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
94842426 TTCT-AGCATACATCACAATACTTAAATAATCACATAACA
1 TT-TAAGCATATATCACAATACTCATATAATCACATAACA
*
94842465 TTTAAGCATATATCATAATACTCA
1 TTTAAGCATATATCACAATACTCA
94842489 AAAACATGTT
Statistics
Matches: 157, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 1 0.01
39 156 0.99
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:94843238 original size:12 final size:12
Alignment explanation
Indices: 94843221--94843245 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94843211 CAAATCTGGA
94843221 ACACAACAATTC
1 ACACAACAATTC
94843233 ACACAACAATTC
1 ACACAACAATTC
94843245 A
1 A
94843246 TTAAATAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (12 bp):
ACACAACAATTC
Found at i:94844689 original size:30 final size:30
Alignment explanation
Indices: 94844618--94844772 Score: 138
Period size: 30 Copynumber: 5.2 Consensus size: 30
94844608 CATCGAACTG
* *
94844618 TGAAAAGGGATAGCTTCGGCTATC-AATCA
1 TGAAAAGGGATAGCTTCAGCTATCAAATTA
* *
94844647 CGAAAAGGGATGGCTTCAGCTATCAAATTA
1 TGAAAAGGGATAGCTTCAGCTATCAAATTA
* * * * *
94844677 TGAAAAGTGAT-G-GTGACGACTATCGAACTA
1 TGAAAAGGGATAGCTTCA-G-CTATCAAATTA
* * *
94844707 TGAAATGGGATAGCTACGGCTATCAAATTA
1 TGAAAAGGGATAGCTTCAGCTATCAAATTA
94844737 TGAAAAGGGATAGCTTC-GACTATCAAATTA
1 TGAAAAGGGATAGCTTCAG-CTATCAAATTA
*
94844767 CGAAAA
1 TGAAAA
94844773 AAGGTCAACC
Statistics
Matches: 99, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
28 2 0.02
29 24 0.24
30 71 0.72
31 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTCAGCTATCAAATTA
Found at i:94844728 original size:89 final size:90
Alignment explanation
Indices: 94844587--94844772 Score: 250
Period size: 89 Copynumber: 2.1 Consensus size: 90
94844577 ACCATTGATA
* * *
94844587 ATGAAAAGGGATCGTGATGACCATCGAACTGTGAAAAGGGATAGCTTCGGCTATC-AATCACGAA
1 ATGAAAAGGGATCGTGACGACCATCGAACTATGAAAAGGGATAGCTACGGCTATCAAATCACGAA
*
94844651 AAGGGATGGCTTC-AGCTATCAAATT
66 AAGGGATAGCTTCGA-CTATCAAATT
* * * * * *
94844676 ATGAAAAGTGATGGTGACGACTATCGAACTATGAAATGGGATAGCTACGGCTATCAAATTATGAA
1 ATGAAAAGGGATCGTGACGACCATCGAACTATGAAAAGGGATAGCTACGGCTATCAAATCACGAA
94844741 AAGGGATAGCTTCGACTATCAAATT
66 AAGGGATAGCTTCGACTATCAAATT
*
94844766 ACGAAAA
1 ATGAAAA
94844773 AAGGTCAACC
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
89 48 0.57
90 35 0.42
91 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (90 bp):
ATGAAAAGGGATCGTGACGACCATCGAACTATGAAAAGGGATAGCTACGGCTATCAAATCACGAA
AAGGGATAGCTTCGACTATCAAATT
Found at i:94844757 original size:60 final size:59
Alignment explanation
Indices: 94844618--94844772 Score: 170
Period size: 60 Copynumber: 2.6 Consensus size: 59
94844608 CATCGAACTG
* * *
94844618 TGAAAAGGGATAGCTTCGGCTATCAATCACGAAAAGGGATGGCTTCAGCTATCAAATTA
1 TGAAAAGGGATAGCTTCGACTATCAATCACGAAAAGGGATAGCTACAGCTATCAAATTA
* * * * * *
94844677 TGAAAAGTGAT-GGTGACGACTATCGAA-CTATGAAATGGGATAGCTACGGCTATCAAATTA
1 TGAAAAGGGATAGCT-TCGACTATC-AATC-ACGAAAAGGGATAGCTACAGCTATCAAATTA
*
94844737 TGAAAAGGGATAGCTTCGACTATCAAATTACGAAAA
1 TGAAAAGGGATAGCTTCGACTATC-AATCACGAAAA
94844773 AAGGTCAACC
Statistics
Matches: 75, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
58 2 0.03
59 18 0.24
60 53 0.71
61 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (59 bp):
TGAAAAGGGATAGCTTCGACTATCAATCACGAAAAGGGATAGCTACAGCTATCAAATTA
Found at i:94853753 original size:21 final size:21
Alignment explanation
Indices: 94853710--94853755 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
94853700 TGACCACGGC
* *
94853710 CTCTCGGTGGCTACTGAGCTA
1 CTCTCGATGGCTACTAAGCTA
* *
94853731 CTCTCGATGGCTGCTAAGTTA
1 CTCTCGATGGCTACTAAGCTA
94853752 CTCT
1 CTCT
94853756 TAGCAGTGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.28, G:0.24, T:0.33
Consensus pattern (21 bp):
CTCTCGATGGCTACTAAGCTA
Found at i:94855078 original size:18 final size:20
Alignment explanation
Indices: 94855057--94855104 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 20
94855047 TATCAAAAAT
94855057 AGTTTCAGTTT-CAATT-TC
1 AGTTTCAGTTTACAATTCTC
94855075 AGTTTCAGTTTAGACAATTCTC
1 AGTTTCAGTTT--ACAATTCTC
94855097 AGTTTCAG
1 AGTTTCAG
94855105 AAAACTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.42
21 5 0.19
22 10 0.38
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.44
Consensus pattern (20 bp):
AGTTTCAGTTTACAATTCTC
Found at i:94862227 original size:7 final size:7
Alignment explanation
Indices: 94862215--94862239 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94862205 AGTTGAAAAT
94862215 AAAAGAG
1 AAAAGAG
94862222 AAAAGAG
1 AAAAGAG
94862229 AAAAGAG
1 AAAAGAG
94862236 AAAA
1 AAAA
94862240 ATTAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (7 bp):
AAAAGAG
Done.