Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 288 of 310
Found at i:94864701 original size:15 final size:16
Alignment explanation
Indices: 94864683--94864714 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
94864673 ATACTCAATG
94864683 AAATTTTTACC-ATTA
1 AAATTTTTACCAATTA
94864698 AAATTTTTACCAATTA
1 AAATTTTTACCAATTA
94864714 A
1 A
94864715 TACAGTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATTTTTACCAATTA
Found at i:94867198 original size:21 final size:21
Alignment explanation
Indices: 94867160--94867199 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
94867150 TAATTATCTT
*
94867160 ATAATTGCACATGGATTTGTA
1 ATAATTGCACATGAATTTGTA
* *
94867181 ATAATTGCATATTAATTTG
1 ATAATTGCACATGAATTTG
94867200 CAAATTTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (21 bp):
ATAATTGCACATGAATTTGTA
Found at i:94868665 original size:32 final size:32
Alignment explanation
Indices: 94868628--94868709 Score: 101
Period size: 32 Copynumber: 2.6 Consensus size: 32
94868618 TTGAAATTAG
* *
94868628 TTTGTTGGATTTTGAAATTATTATGTCTTAAA
1 TTTGTTGGATATTGAAATTATCATGTCTTAAA
* * * *
94868660 TTTGTTAGATATTGAATTTATCATGTTTTAAG
1 TTTGTTGGATATTGAAATTATCATGTCTTAAA
*
94868692 CTTGTTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
94868710 GATTGACAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.51
Consensus pattern (32 bp):
TTTGTTGGATATTGAAATTATCATGTCTTAAA
Found at i:94870454 original size:79 final size:81
Alignment explanation
Indices: 94870352--94870535 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
94870342 GCTCCTCGTT
* * *
94870352 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
94870414 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
94870432 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
94870496 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
94870512 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94870536 CATCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 14 0.15
79 55 0.60
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:94870469 original size:39 final size:41
Alignment explanation
Indices: 94870352--94870535 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
94870342 GCTCCTCGTT
* * *
94870352 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
94870392 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
94870432 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
94870471 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
94870512 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94870536 CATCATTCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 65 0.51
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:94874944 original size:14 final size:14
Alignment explanation
Indices: 94874927--94874957 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
94874917 AGTAAATCAC
*
94874927 TTTCCAGAAATTAT
1 TTTCCAGAAAATAT
94874941 TTTCCAGAAAATAT
1 TTTCCAGAAAATAT
94874955 TTT
1 TTT
94874958 ACTGGAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (14 bp):
TTTCCAGAAAATAT
Found at i:94875181 original size:11 final size:11
Alignment explanation
Indices: 94875165--94875203 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
94875155 AACATTTTCA
94875165 TAATAAAATAT
1 TAATAAAATAT
94875176 TAATAAAA-AT
1 TAATAAAATAT
94875186 CTAACTAAAATAT
1 -TAA-TAAAATAT
94875199 TAATA
1 TAATA
94875204 CTATAACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 8 0.32
13 2 0.08
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:94878654 original size:46 final size:46
Alignment explanation
Indices: 94878558--94878719 Score: 191
Period size: 46 Copynumber: 3.5 Consensus size: 46
94878548 TTTGATCTGA
* * * **
94878558 AACATATGCAGGAACTCAGAACCTAATCACGTATTCTTGAGTCCAT
1 AACATATGCAGGAGCTCAAAACCTAATCATGTATTCTTGAGTCCGC
* * * * *
94878604 AACATAAGAAAGAGCTCAAAACCTAATCATGTATTCTCGAGTCTGC
1 AACATATGCAGGAGCTCAAAACCTAATCATGTATTCTTGAGTCCGC
* *
94878650 AACATATGCAGGAGCT-AGAAATCTATTCATGTATTCTTGAGTCCGC
1 AACATATGCAGGAGCTCA-AAACCTAATCATGTATTCTTGAGTCCGC
*
94878696 AACATATGCAGGAACTCAAAACCT
1 AACATATGCAGGAGCTCAAAACCT
94878720 GGGCAAACTC
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
45 1 0.01
46 93 0.98
47 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (46 bp):
AACATATGCAGGAGCTCAAAACCTAATCATGTATTCTTGAGTCCGC
Found at i:94895490 original size:45 final size:45
Alignment explanation
Indices: 94895414--94895548 Score: 211
Period size: 45 Copynumber: 3.0 Consensus size: 45
94895404 CCGTTACACG
* * *
94895414 GTGG-ATCAGCACATAGC-ACCACCCTTATAATCAATTATATTCA
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
* *
94895457 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACCCA
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
94895502 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
94895547 GT
1 GT
94895549 ATACGTAGTA
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 4 0.05
44 13 0.16
45 66 0.80
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
Found at i:94897159 original size:14 final size:15
Alignment explanation
Indices: 94897134--94897163 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
94897124 ATGAGTAAAT
94897134 AAAATAATAATGAAA
1 AAAATAATAATGAAA
94897149 AAAATAA-AATGAAA
1 AAAATAATAATGAAA
94897163 A
1 A
94897164 CAAGTAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAATAATAATGAAA
Found at i:94903747 original size:6 final size:6
Alignment explanation
Indices: 94903728--94903760 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
94903718 AGATTGGAAG
*
94903728 TTTCCA TTTTCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
94903761 TTGGAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:94906894 original size:29 final size:28
Alignment explanation
Indices: 94906807--94906898 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 28
94906797 TTATGGCTAC
* * *
94906807 CTCTATTAAAGGACGCCTCTGTGGCAAT
1 CTCTGTTAAAGGACACCTTTGTGGCAAT
* * *
94906835 CTTTG-TAAAGGACACCTTGGTGACAAT
1 CTCTGTTAAAGGACACCTTTGTGGCAAT
* *
94906862 CTCTGTTAAAGGATATCTTTGTGGCGAAT
1 CTCTGTTAAAGGACACCTTTGTGGC-AAT
94906891 CTCT-TTAA
1 CTCTGTTAA
94906899 GGAAAACTTA
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (28 bp):
CTCTGTTAAAGGACACCTTTGTGGCAAT
Found at i:94906898 original size:28 final size:27
Alignment explanation
Indices: 94906807--94906898 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 27
94906797 TTATGGCTAC
* *
94906807 CTCTATTAAAGGACGCCTCTGTGGCAAT
1 CTCT-TTAAAGGACACCTTTGTGGCAAT
* *
94906835 CT-TTGTAAAGGACACCTTGGTGACAAT
1 CTCTT-TAAAGGACACCTTTGTGGCAAT
* *
94906862 CTCTGTTAAAGGATATCTTTGTGGCGAAT
1 CTCT-TTAAAGGACACCTTTGTGGC-AAT
94906891 CTCTTTAA
1 CTCTTTAA
94906899 GGAAAACTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
26 1 0.02
27 21 0.40
28 22 0.42
29 8 0.15
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
CTCTTTAAAGGACACCTTTGTGGCAAT
Found at i:94906912 original size:28 final size:29
Alignment explanation
Indices: 94906826--94906913 Score: 69
Period size: 28 Copynumber: 3.2 Consensus size: 29
94906816 AGGACGCCTC
* * *
94906826 TGTGGC-AATCTTTG-TAAAGGACACCTT
1 TGTGGCGAATCTCTGTTAAAGGAAAACTT
* * * *
94906853 GGTGAC-AATCTCTGTTAAAGGATATCTT
1 TGTGGCGAATCTCTGTTAAAGGAAAACTT
94906881 TGTGGCGAATCTCT-TT-AAGGAAAACTT
1 TGTGGCGAATCTCTGTTAAAGGAAAACTT
94906908 ATGTGG
1 -TGTGG
94906914 TAACTACTGA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 20 0.41
28 22 0.45
29 7 0.14
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (29 bp):
TGTGGCGAATCTCTGTTAAAGGAAAACTT
Found at i:94909626 original size:50 final size:50
Alignment explanation
Indices: 94909516--94909752 Score: 298
Period size: 50 Copynumber: 4.7 Consensus size: 50
94909506 ACATTAAGAG
*
94909516 GATGAGA--TCCCATGTAAGACCACGTCTGGGACATGGCATTGGCATCATCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA
* * *
94909567 GATTATGAGAGGTCCCATGTAAAACCATGTCTGGGGCATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
94909620 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
** * *
94909670 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** *
94909720 TATGAGAACTCCCATGTAAGACCATATCTGGGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGA
94909753 TGTGGTATTA
Statistics
Matches: 164, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
50 119 0.73
51 1 0.01
53 4 0.02
54 6 0.04
55 1 0.01
56 33 0.20
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:94921623 original size:16 final size:16
Alignment explanation
Indices: 94921602--94921636 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
94921592 GTCACATATC
94921602 TTTTTTTAATA-TTTA
1 TTTTTTTAATATTTTA
94921617 TTTTTTTAATATTTTA
1 TTTTTTTAATATTTTA
94921633 TTTT
1 TTTT
94921637 ACTTTATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTTAATATTTTA
Found at i:94922559 original size:9 final size:8
Alignment explanation
Indices: 94922538--94922574 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
94922528 AAATTTATTC
94922538 AAAATTTA
1 AAAATTTA
*
94922546 AAATTTTA
1 AAAATTTA
94922554 AAAATTTA
1 AAAATTTA
94922562 AAAATTTA
1 AAAATTTA
94922570 AAAAT
1 AAAAT
94922575 GTATTCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
AAAATTTA
Found at i:94924104 original size:43 final size:43
Alignment explanation
Indices: 94924016--94924106 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 43
94924006 GCAATGTGCG
* *
94924016 TTTTCACCTAACATGGCAATGAAAACGCTTCCTGTAGGGCATA
1 TTTTCACCTAACATGGCAATGAAAACGCTTCCTGCAAGGCATA
* * * ** * *
94924059 TTTTCACCTGACATGGTAGTGAAAATTCTTCCTGCAATGCGTA
1 TTTTCACCTAACATGGCAATGAAAACGCTTCCTGCAAGGCATA
94924102 TTTTC
1 TTTTC
94924107 CACTAAAATT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (43 bp):
TTTTCACCTAACATGGCAATGAAAACGCTTCCTGCAAGGCATA
Found at i:94929399 original size:32 final size:32
Alignment explanation
Indices: 94929359--94929609 Score: 261
Period size: 32 Copynumber: 7.8 Consensus size: 32
94929349 ATATATTACG
* ***
94929359 TATTGTCGAATTGAATTGTATAGGTATACACC
1 TATTGTCGAATTGAATTGTATATGTATACTTA
*
94929391 TATTGTCGAATTGAATTGTATATGTATACGTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* * *
94929423 TAGTGCCAAATTGAATTGTATATGTATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* *
94929455 TAATGTCGAATTGAATTGTATATTTATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
** * ***
94929487 TATTCCCGAATTGAATTGTATAGGTATACACC
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* * *
94929519 TATTGTTGAACTGAATTGTATATGCATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
**
94929551 TATTACCGAATTGAATTGTATATGTATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* * * *
94929583 TGTT-TCCAAATTTATTTGTATATGTAT
1 TATTGT-CGAATTGAATTGTATATGTAT
94929610 TTATATATTG
Statistics
Matches: 179, Mismatches: 39, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
32 179 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (32 bp):
TATTGTCGAATTGAATTGTATATGTATACTTA
Found at i:94929440 original size:64 final size:64
Alignment explanation
Indices: 94929365--94929579 Score: 295
Period size: 64 Copynumber: 3.4 Consensus size: 64
94929355 TACGTATTGT
* * *
94929365 CGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTATATGTATACGTATAGTGC
1 CGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTATATGTATACTTATATTAC
* * *** * * *
94929429 CAAATTGAATTGTATATGTATACTTATAATGTCGAATTGAATTGTATATTTATACTTATATTCC
1 CGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTATATGTATACTTATATTAC
* * *
94929493 CGAATTGAATTGTATAGGTATACACCTATTGTTGAACTGAATTGTATATGCATACTTATATTAC
1 CGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTATATGTATACTTATATTAC
*
94929557 CGAATTGAATTGTATATGTATAC
1 CGAATTGAATTGTATAGGTATAC
94929580 TTATGTTTCC
Statistics
Matches: 129, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 129 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (64 bp):
CGAATTGAATTGTATAGGTATACACCTATTGTCGAATTGAATTGTATATGTATACTTATATTAC
Found at i:94929858 original size:41 final size:43
Alignment explanation
Indices: 94929752--94929870 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
94929742 GAGTTGTAAT
94929752 TTCGTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGAGAA
1 TTCGTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGAGAA
** *
94929795 AACGTGTAAGACCATGTTTGGGACATTGGCATCG-TGT-ATG-A
1 TTCGTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGA-GAA
* * * * *
94929836 TTCGTATAAGACCCTGTCTGGGACAGTCGCATCGA
1 TTCGTGTAAGACCATGTTTGGGACATTGGCATCGA
94929871 TATGTGTTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 29 0.45
42 3 0.05
43 32 0.50
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TTCGTGTAAGACCATGTTTGGGACATTGGCATCGAAGTGAGAA
Found at i:94930413 original size:41 final size:41
Alignment explanation
Indices: 94930384--94930471 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
94930374 CTAAAGCGTC
94930384 GCAAATGCTCGGGGATTTAGTGGCATTTTTAAAAAAGCACT
1 GCAAATGCTCGGGGATTTAGTGGCATTTTTAAAAAAGCACT
* ** ** *
94930425 GCTAATGCTCAAGGATTTAGTGGCATTTTTAGGAAAGCGCT
1 GCAAATGCTCGGGGATTTAGTGGCATTTTTAAAAAAGCACT
94930466 GCAAAT
1 GCAAAT
94930472 ATTGCAGTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (41 bp):
GCAAATGCTCGGGGATTTAGTGGCATTTTTAAAAAAGCACT
Found at i:94935053 original size:43 final size:43
Alignment explanation
Indices: 94934993--94935083 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
94934983 CTTTGGGTTC
* * *
94934993 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
* *
94935035 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATGTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
94935078 ATTACC
1 ATTACC
94935084 TTGTAATGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
Found at i:94935531 original size:43 final size:42
Alignment explanation
Indices: 94935426--94935556 Score: 158
Period size: 42 Copynumber: 3.1 Consensus size: 42
94935416 TAATTTTTTT
* *
94935426 TAAAAGTTATGTT-TTTAGCGGCGTTTTTG-TGACAAGCGCCGC
1 TAAAAG-TATGTTCTTTAGCGGCGTTTGTGAT-AAAAGCGCCGC
* * * *
94935468 TAAAAGTTTGTTCTATAGCGGTGTTTGTGATAAAAGTGCCGC
1 TAAAAGTATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
*
94935510 TAAAAGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
1 TAAAAGT-ATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
94935553 TAAA
1 TAAA
94935557 GTTAGCGGCA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
41 5 0.07
42 35 0.47
43 35 0.47
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (42 bp):
TAAAAGTATGTTCTTTAGCGGCGTTTGTGATAAAAGCGCCGC
Found at i:94937226 original size:53 final size:52
Alignment explanation
Indices: 94937169--94937278 Score: 150
Period size: 52 Copynumber: 2.1 Consensus size: 52
94937159 TTCATAAACA
* *
94937169 ACACGACCTGGACACACA-CTCATGTAACCCTTCCACTCGACCTAAGGCATCTC
1 ACACGACCT-GAC-CACATCTCATGTAACCCTTCCACTAGACCTAAAGCATCTC
* * *
94937222 ACACGGCCTGACCACATGTCGTGTAACCCTTCCACTAGACCTAAAGCATCTC
1 ACACGACCTGACCACATCTCATGTAACCCTTCCACTAGACCTAAAGCATCTC
94937274 ACACG
1 ACACG
94937279 GCCATGTGCC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
51 4 0.08
52 39 0.76
53 8 0.16
ACGTcount: A:0.28, C:0.38, G:0.15, T:0.19
Consensus pattern (52 bp):
ACACGACCTGACCACATCTCATGTAACCCTTCCACTAGACCTAAAGCATCTC
Found at i:94937994 original size:86 final size:86
Alignment explanation
Indices: 94937825--94937986 Score: 261
Period size: 86 Copynumber: 1.9 Consensus size: 86
94937815 CCAACAAGTG
* *
94937825 GTGGCTCGTCCACAAAACCCAGTGGTAATTTGTTTAATCTACAAATATGTTGTGCACTCACAACG
1 GTGGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTACAAATATGTTGTGCACTCACAACA
94937890 AGTGGCAGTAACTACAAATAT
66 AGTGGCAGTAACTACAAATAT
* *** *
94937911 GTGGCTCGTCCACAAAACCCAGTGGCAGTTTGTTTAATCTGTGAATATGTTGTGTACTCACAACA
1 GTGGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTACAAATATGTTGTGCACTCACAACA
94937976 AGTGGCAGTAA
66 AGTGGCAGTAA
94937987 TTGCAAATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 69 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (86 bp):
GTGGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTACAAATATGTTGTGCACTCACAACA
AGTGGCAGTAACTACAAATAT
Found at i:94939124 original size:15 final size:15
Alignment explanation
Indices: 94939099--94939133 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
94939089 GACTCTATTT
*
94939099 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
94939113 TAATTAATATTAAGA
1 TAATTAATATTAAGA
94939128 TAATTA
1 TAATTA
94939134 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:94945550 original size:18 final size:18
Alignment explanation
Indices: 94945502--94945553 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
94945492 CAACCCAATT
**
94945502 TTTATTTTATTTT-TTGT
1 TTTATTTTATTTTATTAC
*
94945519 TTTTTCTTTA-TTTATTAC
1 TTTAT-TTTATTTTATTAC
94945537 TTTATTTTATTTTATTA
1 TTTATTTTATTTTATTA
94945554 TTTTCCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTATTTTATTTTATTAC
Found at i:94945647 original size:5 final size:5
Alignment explanation
Indices: 94945637--94945689 Score: 56
Period size: 5 Copynumber: 10.4 Consensus size: 5
94945627 GCAACCCAAT
*
94945637 TTTTA TTTTA TTTT- TTGTTT TTTTA TTATT- TTATTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TT-TTA TTTTA TT-TTA TT-TTA TTTTA TTTTA
94945683 TTTTA TT
1 TTTTA TT
94945690 ATTTATTACT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
4 2 0.05
5 35 0.81
6 6 0.14
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:94945665 original size:18 final size:18
Alignment explanation
Indices: 94945637--94945693 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
94945627 GCAACCCAAT
*
94945637 TTTTATTTTATTTT-TTG
1 TTTTATTTTATTTTATTA
*
94945654 TTTTTTTATTATTTTATTA
1 TTTTATT-TTATTTTATTA
94945673 TTTTATTTTATTTTATTA
1 TTTTATTTTATTTTATTA
94945691 TTT
1 TTT
94945694 ATTACTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.17
18 21 0.60
19 8 0.23
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTATTTTATTTTATTA
Found at i:94945666 original size:136 final size:137
Alignment explanation
Indices: 94945421--94945693 Score: 514
Period size: 136 Copynumber: 2.0 Consensus size: 137
94945411 GTTGAGAAAA
94945421 TCCATTTGGAACCACTATAGAACCAATAACGACGTCGAGCTAACGACGTTAAACAAGCGCTTGTT
1 TCCATTTGGAACCACTATAGAACCAATAACGACGTCGAGCTAACGACGTTAAACAAGCGCTTGTT
94945486 GGGAGGCAACCCAATTTTTATTTTATTTTTTGTTTTTTCTTTA-TTTATTACTTTATTTTATTTT
66 GGGAGGCAACCCAATTTTTATTTTATTTTTTGTTTTTTCTTTATTTTATTACTTTATTTTATTTT
94945550 ATTATTT
131 ATTATTT
94945557 TCCATTTGGAACCACTATAGAACCAATAACGACGTCGAGCTAACGACGTTAAACAAGCGCTTGTT
1 TCCATTTGGAACCACTATAGAACCAATAACGACGTCGAGCTAACGACGTTAAACAAGCGCTTGTT
*
94945622 GGGAGGCAACCCAATTTTTATTTTATTTTTTGTTTTTT-TATTATTTTATTATTTTATTTTATTT
66 GGGAGGCAACCCAATTTTTATTTTATTTTTTGTTTTTTCT-TTATTTTATTACTTTATTTTATTT
94945686 TATTATTT
130 TATTATTT
94945694 ATTACTTATT
Statistics
Matches: 134, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
135 1 0.01
136 106 0.79
137 27 0.20
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (137 bp):
TCCATTTGGAACCACTATAGAACCAATAACGACGTCGAGCTAACGACGTTAAACAAGCGCTTGTT
GGGAGGCAACCCAATTTTTATTTTATTTTTTGTTTTTTCTTTATTTTATTACTTTATTTTATTTT
ATTATTT
Found at i:94945668 original size:8 final size:8
Alignment explanation
Indices: 94945639--94945697 Score: 68
Period size: 8 Copynumber: 7.4 Consensus size: 8
94945629 AACCCAATTT
94945639 TTATTTTA
1 TTATTTTA
*
94945647 TT-TTTTG
1 TTATTTTA
*
94945654 TTTTTTTA
1 TTATTTTA
94945662 TTATTTTA
1 TTATTTTA
94945670 TTATTTTA
1 TTATTTTA
94945678 TTTTATTTTA
1 --TTATTTTA
94945688 TTA-TTTA
1 TTATTTTA
94945695 TTA
1 TTA
94945698 CTTATTTGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
7 13 0.29
8 24 0.53
10 8 0.18
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (8 bp):
TTATTTTA
Found at i:94945704 original size:29 final size:26
Alignment explanation
Indices: 94945644--94945697 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
94945634 AATTTTTATT
*
94945644 TTATTTTTTGTTTTTTTATTATTTTA
1 TTATTTTTTGTTATTTTATTATTTTA
94945670 TTATTTTATT-TTATTTTATTA-TTTA
1 TTATTTT-TTGTTATTTTATTATTTTA
94945695 TTA
1 TTA
94945698 CTTATTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
26 17 0.65
27 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (26 bp):
TTATTTTTTGTTATTTTATTATTTTA
Found at i:94945879 original size:22 final size:23
Alignment explanation
Indices: 94945851--94945914 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
94945841 GCCCAGAATG
* *
94945851 CCTGCAGCCAAACTACCC-TATT
1 CCTGCAGCCAAACCACCCTTATC
94945873 CCTGCAGCC-AACCACCCTTATC
1 CCTGCAGCCAAACCACCCTTATC
*
94945895 CCTGCACCCAAGCACCACCC
1 CCTGCAGCCAA--ACCACCC
94945915 CTCAACACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 7 0.20
22 20 0.57
23 1 0.03
25 7 0.20
ACGTcount: A:0.25, C:0.50, G:0.09, T:0.16
Consensus pattern (23 bp):
CCTGCAGCCAAACCACCCTTATC
Found at i:94947081 original size:16 final size:17
Alignment explanation
Indices: 94947062--94947111 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
94947052 TTCCTAAAGC
94947062 ATAAA-AAATATAAATA
1 ATAAATAAATATAAATA
94947078 ATAAATAAAT-TAAAATA
1 ATAAATAAATAT-AAATA
94947095 A-AAATAAATA-AAATA
1 ATAAATAAATATAAATA
94947110 AT
1 AT
94947112 TTGGGAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 6 0.20
16 14 0.47
17 10 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAATAAATATAAATA
Found at i:94947085 original size:20 final size:18
Alignment explanation
Indices: 94947062--94947107 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 18
94947052 TTCCTAAAGC
94947062 ATAAAAAATATAAATAATAA
1 ATAAAAAA-ATAAA-AATAA
94947082 ATAAATTAAAATAAAAATAA
1 ATAAA--AAAATAAAAATAA
94947102 ATAAAA
1 ATAAAA
94947108 TAATTTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.04
20 15 0.62
21 5 0.21
22 3 0.12
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
ATAAAAAAATAAAAATAA
Found at i:94947667 original size:15 final size:15
Alignment explanation
Indices: 94947642--94947676 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
94947632 GACTCTATTT
*
94947642 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
94947656 TAATTAATATTAAGA
1 TAATTAATATTAAGA
94947671 TAATTA
1 TAATTA
94947677 CTAAGGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:94954078 original size:27 final size:27
Alignment explanation
Indices: 94954048--94954099 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94954038 TTACATTATG
94954048 TTTAAAT-TATAAAAAAAAATTAAAAAT
1 TTTAAATATAT-AAAAAAAATTAAAAAT
**
94954075 TTTAAATATATATTAAAAATTAAAA
1 TTTAAATATATAAAAAAAATTAAAA
94954100 GAAAGCCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
TTTAAATATATAAAAAAAATTAAAAAT
Found at i:94954080 original size:20 final size:20
Alignment explanation
Indices: 94954051--94954096 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
94954041 CATTATGTTT
94954051 AAATTATAAAAAAAAATTAA
1 AAATTATAAAAAAAAATTAA
* * * *
94954071 AAATTTTAAATATATATTAA
1 AAATTATAAAAAAAAATTAA
94954091 AAATTA
1 AAATTA
94954097 AAAGAAAGCC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATTATAAAAAAAAATTAA
Found at i:94954568 original size:18 final size:18
Alignment explanation
Indices: 94954508--94954569 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
94954498 TTTAGACTCA
*
94954508 ATTTTTTAAATAATTTTAA
1 ATTTTTT-AATAATTTTAT
*
94954527 ATTTTTTTAT-ATGTTTAT
1 ATTTTTTAATAAT-TTTAT
* *
94954545 AATTTTTAATAATTTTTT
1 ATTTTTTAATAATTTTAT
94954563 ATTTTTT
1 ATTTTTT
94954570 TTTTAATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 2 0.06
18 24 0.69
19 9 0.26
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
ATTTTTTAATAATTTTAT
Found at i:94954569 original size:19 final size:19
Alignment explanation
Indices: 94954508--94954580 Score: 53
Period size: 19 Copynumber: 3.9 Consensus size: 19
94954498 TTTAGACTCA
* **
94954508 ATTTTTTAAATAATTTTAA
1 ATTTTTTTAATAATTTTTT
*
94954527 ATTTTTTT-AT-A-TGTTT
1 ATTTTTTTAATAATTTTTT
*
94954543 ATAATTTTTAATAATTTTTT
1 AT-TTTTTTAATAATTTTTT
**
94954563 ATTTTTTTTTTAATTTTT
1 ATTTTTTTAATAATTTTT
94954581 CATATTTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
16 4 0.10
17 6 0.15
18 4 0.10
19 21 0.51
20 6 0.15
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (19 bp):
ATTTTTTTAATAATTTTTT
Found at i:94955018 original size:6 final size:6
Alignment explanation
Indices: 94955009--94955034 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
94954999 AGGCAACGGC
94955009 AGGGAG AGGGAG AGGGAG AGGGAG AG
1 AGGGAG AGGGAG AGGGAG AGGGAG AG
94955035 AGAAAAGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
AGGGAG
Found at i:94965513 original size:40 final size:42
Alignment explanation
Indices: 94965464--94965545 Score: 114
Period size: 40 Copynumber: 2.0 Consensus size: 42
94965454 GATAAAGCAG
94965464 GAAAACGCTTCCTCAAGGAAGCGC-TT-TGTCCACGTGGACA
1 GAAAACGCTTCCTCAAGGAAGCGCTTTGTGTCCACGTGGACA
** **
94965504 GAAAACGCTTCCTTGAGGGCGCGCTTTGTGTCCACGTGGACA
1 GAAAACGCTTCCTCAAGGAAGCGCTTTGTGTCCACGTGGACA
94965546 AAGCGATTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
40 20 0.56
41 2 0.06
42 14 0.39
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (42 bp):
GAAAACGCTTCCTCAAGGAAGCGCTTTGTGTCCACGTGGACA
Found at i:94965650 original size:16 final size:16
Alignment explanation
Indices: 94965631--94965666 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
94965621 GGTTTTTGAA
*
94965631 TTTTTAGATTTTAGGG
1 TTTTTAGATTTTAGAG
94965647 TTTTTAGATTTTAGAG
1 TTTTTAGATTTTAGAG
94965663 TTTT
1 TTTT
94965667 AAGGAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.61
Consensus pattern (16 bp):
TTTTTAGATTTTAGAG
Found at i:94965881 original size:97 final size:97
Alignment explanation
Indices: 94965693--94965980 Score: 435
Period size: 97 Copynumber: 3.0 Consensus size: 97
94965683 AAATAAAGGT
*
94965693 TTAGGGTTTAGGGTTTCTT-AATTAAATTAATTATAAA-TTT-AAAAATTAGATTAGGGTTTAGT
1 TTAGGGTTTAGGGTTTCTTGAA-TAAATTAATTATAAATTTTAAAAAATTAGATTAGGATTTAGT
* *
94965755 GTTTATGATTTCTAAGGAAAAAAATCAAATAAA
65 GTTTAGGATTTTTAAGGAAAAAAATCAAATAAA
*
94965788 TTAGGGTTTAGGGTTTCTTGAATAAATTAATTATAAATTTTAAAAAATTAGATTAAGATTTAGTG
1 TTAGGGTTTAGGGTTTCTTGAATAAATTAATTATAAATTTTAAAAAATTAGATTAGGATTTAGTG
*
94965853 TTTAGGGTTTTTAAGGAAAAAAATCAAATAAA
66 TTTAGGATTTTTAAGGAAAAAAATCAAATAAA
* *
94965885 TTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTAAAAAAATTAGATT-GGAGTTTAG
1 TTAGGGTTTAGGGTTTCTTGAATAAATTAATTATAAATTTT-AAAAAATTAGATTAGGA-TTTAG
*
94965949 TATTTAGGATTTTTAAGG--AAAAATCAAATAAA
64 TGTTTAGGATTTTTAAGGAAAAAAATCAAATAAA
94965981 GCTAGTTGTT
Statistics
Matches: 178, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
95 34 0.19
96 19 0.11
97 91 0.51
98 34 0.19
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.39
Consensus pattern (97 bp):
TTAGGGTTTAGGGTTTCTTGAATAAATTAATTATAAATTTTAAAAAATTAGATTAGGATTTAGTG
TTTAGGATTTTTAAGGAAAAAAATCAAATAAA
Found at i:94966566 original size:11 final size:11
Alignment explanation
Indices: 94966550--94966594 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
94966540 CTTAATAAAT
94966550 ATTTATAATTA
1 ATTTATAATTA
94966561 ATTTATAATT-
1 ATTTATAATTA
*
94966571 -TTTTTAA--A
1 ATTTATAATTA
94966579 ATTTATAATTA
1 ATTTATAATTA
94966590 ATTTA
1 ATTTA
94966595 ATTAAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
9 12 0.43
11 16 0.57
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
ATTTATAATTA
Found at i:94966594 original size:18 final size:18
Alignment explanation
Indices: 94966560--94966595 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
94966550 ATTTATAATT
**
94966560 AATTTATAATTTTTTTAA
1 AATTTATAATTAATTTAA
94966578 AATTTATAATTAATTTAA
1 AATTTATAATTAATTTAA
94966596 TTAAGAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTTATAATTAATTTAA
Found at i:94966668 original size:16 final size:17
Alignment explanation
Indices: 94966643--94966676 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
94966633 TTTTTTCCTT
94966643 AAAACCCTAAAA-TCTA
1 AAAACCCTAAAACTCTA
*
94966659 AAAACTCTAAAACTCTA
1 AAAACCCTAAAACTCTA
94966676 A
1 A
94966677 CCCTAATTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAACCCTAAAACTCTA
Found at i:94973080 original size:15 final size:16
Alignment explanation
Indices: 94973055--94973088 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
94973045 GGGAGAGGAT
94973055 TTTTCTTTTTATTTTC
1 TTTTCTTTTTATTTTC
94973071 TTTT-TTTTTATTTTC
1 TTTTCTTTTTATTTTC
94973086 TTT
1 TTT
94973089 GTAATGCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTCTTTTTATTTTC
Found at i:94974925 original size:31 final size:31
Alignment explanation
Indices: 94974890--94974951 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
94974880 AATTTATTCA
*
94974890 AGTTAAAAGGATTGTATTTTAAAATATTTTC
1 AGTTAAAAGGATCGTATTTTAAAATATTTTC
94974921 AGTTAAAAGGATCGTATTTTAAAATATTTTC
1 AGTTAAAAGGATCGTATTTTAAAATATTTTC
94974952 TAAATTTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.44
Consensus pattern (31 bp):
AGTTAAAAGGATCGTATTTTAAAATATTTTC
Found at i:94978705 original size:14 final size:14
Alignment explanation
Indices: 94978688--94978722 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
94978678 AAAAAAGATG
*
94978688 AAAAATGAAAATGA
1 AAAAATGAAAAAGA
*
94978702 AAAAATGAAAAAGT
1 AAAAATGAAAAAGA
94978716 AAAAATG
1 AAAAATG
94978723 GATAGGCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAAATGAAAAAGA
Found at i:94980041 original size:44 final size:44
Alignment explanation
Indices: 94979993--94980116 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
94979983 CAAAGACAGC
94979993 AAATCTTATCTCCCTGATG-TTACAGTGAAGCAGATTGAAACAAG
1 AAATCTTATCTCCCTGA-GATTACAGTGAAGCAGATTGAAACAAG
* * *
94980037 AAATCTTATCTCCCTGAGATTACAGCGGAA-CAGATTGAAGCTAG
1 AAATCTTATCTCCCTGAGATTACAG-TGAAGCAGATTGAAACAAG
* * * * *
94980081 TAATCCTATCTCCCGGAGATTACAGTGGAGCGGATT
1 AAATCTTATCTCCCTGAGATTACAGTGAAGCAGATT
94980117 AAAGTAAAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 3 0.04
44 62 0.91
45 3 0.04
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAGATTACAGTGAAGCAGATTGAAACAAG
Found at i:94980385 original size:50 final size:49
Alignment explanation
Indices: 94980331--94980583 Score: 143
Period size: 50 Copynumber: 5.1 Consensus size: 49
94980321 TCCCTGGCGA
94980331 TGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACAACGGTG-ATCTTGCTGCCCCGACAT
** * * ** * * * * ** **
94980381 TGCAGTTAAAAAGACTAAAGCCACGGCGATGAGTGTTACTTTCCTGGTGA-
1 TGCAGTGGAACAGATTAAAGCCACAACGGTGA-TCTTGC-TGCCCCGACAT
*
94980431 AGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACAACGGTG-ATCTTGCTGCCCCGACAT
** * * ** * * * * ** **
94980481 TGCAGTTAAAAAGACTAAAGCCACGGCGATGAGTGTTACTTTCCTGGTGA-
1 TGCAGTGGAACAGATTAAAGCCACAACGGTGA-TCTTGC-TGCCCCGACAT
*
94980531 AGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCT-CCCCTGACAT
1 TGCAGTGGAACAGATTAAAGCCACAACGGTG-ATCTTGCTGCCCC-GACAT
94980581 TGC
1 TGC
94980584 GGTTAAAAAT
Statistics
Matches: 135, Mismatches: 59, Indels: 18
0.64 0.28 0.08
Matches are distributed among these distances:
48 2 0.01
49 10 0.07
50 111 0.82
51 12 0.09
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (49 bp):
TGCAGTGGAACAGATTAAAGCCACAACGGTGATCTTGCTGCCCCGACAT
Found at i:94980496 original size:100 final size:100
Alignment explanation
Indices: 94980323--94980601 Score: 488
Period size: 100 Copynumber: 2.8 Consensus size: 100
94980313 ATCTTATCTC
* *
94980323 CCTGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACATTGCAGTT
1 CCTGGTGAAGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACATTGCAGTT
94980388 AAAAAGACTAAAGCCACGGCGATGAGTGTTACTTT
66 AAAAAGACTAAAGCCACGGCGATGAGTGTTACTTT
94980423 CCTGGTGAAGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACATTGCAGTT
1 CCTGGTGAAGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACATTGCAGTT
94980488 AAAAAGACTAAAGCCACGGCGATGAGTGTTACTTT
66 AAAAAGACTAAAGCCACGGCGATGAGTGTTACTTT
* *
94980523 CCTGGTGAAGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCT-CCCCTGACATTGCGGT
1 CCTGGTGAAGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCC-GACATTGCAGT
* *
94980587 TAAAAATATTAAAGC
65 TAAAAAGACTAAAGC
94980602 TACAGCAGCA
Statistics
Matches: 172, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
99 4 0.02
100 168 0.98
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23
Consensus pattern (100 bp):
CCTGGTGAAGCAGTGGAACAGATTAAAGCCACAACGGTGTATCTTGCTGCCCCGACATTGCAGTT
AAAAAGACTAAAGCCACGGCGATGAGTGTTACTTT
Found at i:94980599 original size:50 final size:50
Alignment explanation
Indices: 94980542--94981023 Score: 195
Period size: 50 Copynumber: 9.6 Consensus size: 50
94980532 GCAGTGGAAC
* *
94980542 AGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTCCCCTGACATTGCGGTTAAAA
* * * ** ** * * * * ** **
94980592 ATATTAAAGCTACAGCAGCAAATCTTAC-CTCCAAGGCAGTACAGTGGACC
1 AGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGACATTGCGGTTAAAA
* * * *
94980642 AGATTAAAGCCACGACGGTGAATCTTGC-CTCCTTGACATTGCGGTTAAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGACATTGCGGTT-AAAA
* * ** ** ** ** ** **
94980693 AGACTAAAGCTACAACAGAAAATCTTACCTCCCAAG-CGGTGCAATGGAGC
1 AGATTAAAGCCACAACAGTGAATCTTA-CTCCCCTGACATTGCGGTTAAAA
* * * * * *
94980743 AGATTAAAGACACGACGGTGAATCTTGC-CTCCCTAACATTGCGATTAAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGACATTGCGGTT-AAAA
* * * * * ** *
94980794 AGATTAAAGCTATAACAGTGAATCTTACTTCCCTGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTACTCCCCTGAC-ATTGCGGTTAAAA
* *
94980844 AGATTAAAGCCACAACGGTGAATCTTACTCCCCTGACATTGTGGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTCCCCTGACATTGCGGTTAAAA
* * ** * * ** ** **
94980894 AGATTAAAGCTACAGCAGTGAATCTTAC-CTCCAAGGCAGTGTAGTGGACC
1 AGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGACATTGCGGTTAAAA
** * *
94980944 AGATTAAAGCCACGTCTGTGAATCTT-GTCTCCCTGACATTGCGGTTAAAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGACATTGCGGTT--AAAA
* *
94980996 AGATTAAAGCTACAACAGCGAATCTTAC
1 AGATTAAAGCCACAACAGTGAATCTTAC
94981024 CTCCAAGGTA
Statistics
Matches: 290, Mismatches: 127, Indels: 27
0.65 0.29 0.06
Matches are distributed among these distances:
48 1 0.00
49 6 0.02
50 197 0.68
51 58 0.20
52 27 0.09
53 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGTGAATCTTACTCCCCTGACATTGCGGTTAAAA
Found at i:94981045 original size:102 final size:102
Alignment explanation
Indices: 94980532--94981480 Score: 1321
Period size: 102 Copynumber: 9.4 Consensus size: 102
94980522 TCCTGGTGAA
* * *
94980532 GCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTG-CTCCCCTGACATTGCGGTT--AAAAAT
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCT-CCCTGACATTGCGGTTAAAAAAAG
* * *
94980594 ATTAAAGCTACAGCAGCAAATCTTACCTCCAAGGCAGT
65 ATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
* *
94980632 ACAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCTTGACATTGCGGTT-AAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
* **
94980696 CTAAAGCTACAACAGAAAATCTTACCTCCCAAGCG--GT
66 TTAAAGCTACAACAGCGAATCTTACCT-CCAAG-GTAGT
* * * * *
94980733 GCAATGGAGCAGATTAAAGACACGACGGTGAATCTTGCCTCCCTAACATTGCGATT-AAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
* * * ** *
94980797 TTAAAGCTATAACAGTGAATCTTACTTCCCTGG-CGAT
66 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAG-T
* * * *
94980834 GCAGTGGAACAGATTAAAGCCACAACGGTGAATCTT-ACTCCCCTGACATTGTGGTT--AAAAAG
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCT-CCCTGACATTGCGGTTAAAAAAAG
* * *
94980896 ATTAAAGCTACAGCAGTGAATCTTACCTCCAAGGCAGT
65 ATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
* * * *
94980934 GTAGTGGACCAGATTAAAGCCACGTCTGTGAATCTTGTCTCCCTGACATTGCGGTTAAAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
94980999 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
66 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
* * *
94981036 GCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
94981101 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
66 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
* * *
94981138 GCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
94981203 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
66 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
* * *
94981240 GCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
94981305 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
66 TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
* * *
94981342 GCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGA
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
94981407 TTAAAGCTACAACAGCGAATCTTACCTCCCAAGCG--GT
66 TTAAAGCTACAACAGCGAATCTTACCT-CCAAG-GTAGT
* *
94981444 GCAGTGGAGCAGATTAAAGCCACGACGGTAAATCTTG
1 GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTG
94981481 TTTCCTGTGA
Statistics
Matches: 779, Mismatches: 57, Indels: 24
0.91 0.07 0.03
Matches are distributed among these distances:
99 1 0.00
100 137 0.18
101 162 0.21
102 472 0.61
103 6 0.01
104 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (102 bp):
GCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAAAAGA
TTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGT
Found at i:94981599 original size:168 final size:167
Alignment explanation
Indices: 94981321--94981648 Score: 505
Period size: 168 Copynumber: 2.0 Consensus size: 167
94981311 CTACAACAGC
* * * *
94981321 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCT
1 GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
94981386 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAAGCG-GTGCAGTG
66 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCT-CCAAG-GAGTGCAGTG
*
94981450 GAGCAGATTAAAGCCACGACGGTAAATCTTGTTTCCTGT
129 GACCAGATTAAAGCCACGACGGTAAATCTTGTTTCCTGT
* * * * *
94981489 GAATCTTACCTCCAAGGCAGTGTAGTGGACCAGATTAAAGCCCCGTCTGTGAATCTTGTCTCCCT
1 GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
94981554 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
66 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGG
* * *
94981619 ACCATATTAAAGCCATGACGGTGAATCTTG
130 ACCAGATTAAAGCCACGACGGTAAATCTTG
94981649 CCTCTCTGAC
Statistics
Matches: 145, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
166 1 0.01
167 5 0.03
168 139 0.96
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (167 bp):
GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGAGTGCAGTGGA
CCAGATTAAAGCCACGACGGTAAATCTTGTTTCCTGT
Found at i:94981645 original size:50 final size:50
Alignment explanation
Indices: 94981591--94981754 Score: 143
Period size: 50 Copynumber: 3.2 Consensus size: 50
94981581 CTACAACAGC
94981591 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGT
1 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGT
* * ** * * * * * * ** * *
94981641 GAATCTTGCCTCTC-TGACATTGCGGT-TACAAAAAGATTAAAGCTACAACAGC
1 GAATCTTACCTC-CAAGGTAGTGCAGTGGAC---CATATTAAAGCCATGACGGT
94981693 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGT
1 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGT
*
94981743 GAATCTTGCCTC
1 GAATCTTACCTC
94981755 TCTGACATTG
Statistics
Matches: 79, Mismatches: 29, Indels: 12
0.66 0.24 0.10
Matches are distributed among these distances:
49 2 0.03
50 42 0.53
51 2 0.03
52 31 0.39
53 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (50 bp):
GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGT
Found at i:94981700 original size:270 final size:269
Alignment explanation
Indices: 94981219--94981750 Score: 904
Period size: 270 Copynumber: 2.0 Consensus size: 269
94981209 CTACAACAGC
* * * *
94981219 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCT
1 GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
94981284 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
66 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
94981349 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
131 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
*
94981414 TACAACAGCGAATCTTACCTCCCAAGCG-GTGCAGTGGAGCAGATTAAAGCCACGACGGTAAATC
196 TACAACAGCGAATCTTACCT-CCAAG-GAGTGCAGTGGACCAGATTAAAGCCACGACGGTAAATC
94981478 TTGTTTCCTGT
259 TTGTTTCCTGT
* * * * *
94981489 GAATCTTACCTCCAAGGCAGTGTAGTGGACCAGATTAAAGCCCCGTCTGTGAATCTTGTCTCCCT
1 GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
94981554 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
66 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
*
94981619 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTACAAAAAGATTAAAGC
131 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
* * *
94981684 TACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCT
196 TACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGGACCAGATTAAAGCCACGACGGTAAATCT
94981749 TG
260 TG
94981751 CCTCTCTGAC
Statistics
Matches: 246, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
268 1 0.00
269 5 0.02
270 240 0.98
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (269 bp):
GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
TACAACAGCGAATCTTACCTCCAAGGAGTGCAGTGGACCAGATTAAAGCCACGACGGTAAATCTT
GTTTCCTGT
Found at i:94981802 original size:372 final size:371
Alignment explanation
Indices: 94981117--94981851 Score: 1299
Period size: 372 Copynumber: 2.0 Consensus size: 371
94981107 CTACAACAGC
* * * *
94981117 GAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCT
1 GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
94981182 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
66 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
94981247 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
131 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
94981312 TACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCT
196 TACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCT
94981377 TGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAAGCG
261 TGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAAGCG
* * *
94981442 GTGCAGTGGAGCAGATTAAAGCCACGACGGTAAATCTTGTTTCCTGT
326 ATGCAATGGAACAGATTAAAGCCAC-ACGGTAAATCTTGTTTCCTGT
* * * * *
94981489 GAATCTTACCTCCAAGGCAGTGTAGTGGACCAGATTAAAGCCCCGTCTGTGAATCTTGTCTCCCT
1 GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
94981554 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
66 GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
*
94981619 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTACAAAAAGATTAAAGC
131 ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
94981684 TACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCT
196 TACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCT
* * **
94981749 TGCCTCTCTGACATTGCGGTTACAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCG
261 TGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAAGCG
*
94981814 ATGCAATGGAACAGATTAAAGCCACACGGTGAATCTTG
326 ATGCAATGGAACAGATTAAAGCCACACGGTAAATCTTG
94981852 CTCCCCTGAC
Statistics
Matches: 345, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
371 12 0.03
372 333 0.97
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (371 bp):
GAATCTTACCTCCAAGGCAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCT
GACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGG
ACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGC
TACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCT
TGCCTCTCTGACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAAGCG
ATGCAATGGAACAGATTAAAGCCACACGGTAAATCTTGTTTCCTGT
Found at i:94982158 original size:302 final size:302
Alignment explanation
Indices: 94981512--94983712 Score: 2631
Period size: 302 Copynumber: 7.3 Consensus size: 302
94981502 AAGGCAGTGT
* * ** *
94981512 AGTGGACCAGATTAAAGCCCCGTCTGTGAATCTTG-TCTCCCTGACATTGCGGTTAAAAAAAGAT
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CCCTGACATTGCGGTT-AAAAAAGAT
* **
94981576 TAAAGCTACAACAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGT
64 TAAAGCTACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGGACCAGATTAAAGCCACAACGGT
*
94981641 GAATCTTGCCTCTCTGACATTGCGGTTACAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCC
128 GAATCTTGCCTCCCTGACATTGCGGTTA-AAAAAGATTAAAGCTACAACAGCGAATCTTACCTCC
* ** * * * *
94981706 AAGGTAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGCCTCTCTGACATTGCGGTTA
192 CAGGCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTA
94981771 CAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
257 -AAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
* *
94981818 AATGGAACAGATTAAAGCCAC-ACGGTGAATCTTGCTCCCCTGACATTGAGGTT-AAAAAGATTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTAAAAAAGATTA
* *
94981881 AAGCTACAGCAGCGAATCTTACCTCCAAGGTAGTGCAGTGGACCAGATTAAAGCCACGACGGTGA
66 AAGCTACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGGACCAGATTAAAGCCACAACGGTGA
* * * * *
94981946 ATCTTGCCTCCTTGACATTGCGGTTAAAAAAGATTATAGCTACTATAGCGAATCTTACCTCTCAG
130 ATCTTGCCTCCCTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAG
*
94982011 GCGGTGCAGTGGAGCAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAA
195 GCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAA
94982076 AAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
260 AAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
* *
94982119 AGTAGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACAGTGCGGTT-AAAAAGATTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTAAAAAAGATTA
* * * *
94982183 AAGCTACAGCAGCGAATCTTACCTCCAAGGCAATGTAGTGGACCAGATTAAAGCCACAACGTTGA
66 AAGCTACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGGACCAGATTAAAGCCACAACGGTGA
* * * * *
94982248 ATCTTCCCTCCTTGACATTGCGGTTAAAATAGATTAAAGCTACAACAGCAAATCTTATCTCCCAG
130 ATCTTGCCTCCCTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAG
* * *
94982313 GTGGTGCAGTGGAGCAGATTAAAGCCACGACGGTGAATCTTACCTCCCTGACATTGCGGTTAAAA
195 GCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAA
* * *
94982378 AATATTTAAGCTATAACAGCGAATCTTACTTCCCTGGCGATGC
260 AAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
* *
94982421 AGTAGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACAGTGCGGTT-AAAAAGATTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTAAAAAAGATTA
* *
94982485 AAGCTACAGCAGCGAATCTTACCTCCAAGGAAGTGCAGTGGACCAGATTAAAGCCACAACGATGA
66 AAGCTACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGGACCAGATTAAAGCCACAACGGTGA
* * * * ** **
94982550 ATCTAGCCTCCCTGACATTTAC-ATTAAAAAAGATAAAAGCTACAACAATGAATCTTACCTCTAA
130 ATCTTGCCTCCCTGACA-TTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCA
** **
94982614 GGCAATGCAGT-GAGTAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAA
194 GGCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTT-AA
* ** *
94982678 AAAAGATTAAAGCTACAACAGCGAATATTA-TCTCCAAGGCGGTGC
258 AAAAGATTAAAGCTACAACAGCGAATCTTACT-TCCCTGGCGATGC
* * * * * * *
94982723 AGTGGAGCAGATTAAAGCCACGACAGTTAATCTTGC-CTCTCTGATATTTCGGTTAAAAAAGATT
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CCCTGACATTGCGGTTAAAAAAGATT
* * *
94982787 AAAGCTACAACAGCGAATCTTACCTCTC-TGGCGATGCAGTGGAGCAGATTAAAGCCACAAC-G-
65 AAAGCTACAACAGCGAATCTTACCTC-CAAGGAG-TGCAGTGGACCAGATTAAAGCCACAACGGT
* * * * * * * * * * *
94982849 CATATATTGCTTCCCCGACATTGCAGTT-AAAAAGATTAAAGCCACAGCGGCGAGTGTTACTTCC
128 GA-ATCTTGCCTCCCTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCC
* * * * * *
94982913 CTGGCGATGCAGTGGAACAGATTAAAGCCACAATGGTAAATCTT-ACTCCACTGACATTGCGGTT
192 CAGGCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCC-CTGACATTGCGGTT
* * ** *
94982977 -AAAAAGATTAAAGCTACAGCAGCGAATCTTACCTCCAAGGC-AGTAC
256 AAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGA-TGC
* * * *
94983023 AGTGGACCAGATTAAAGCCACGACGGTGAATCGTGC-CTCCCTGACAAAT-CGGTTAAAAAAAGA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CCCTGAC-ATTGCGGTT-AAAAAAGA
* ** * ** *
94983086 TTAAAGCTACAACAGTGAATCTTACCTCCCTGGCAATGCAGTGGAATAGATTAAAGCCACAATGG
63 TTAAAGCTACAACAGCGAATCTTACCTCCAAGG-AGTGCAGTGGACCAGATTAAAGCCACAACGG
* * *
94983151 TAAATCTT-ACTCCACTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGTGAATCTTACCTC
127 TGAATCTTGCCTCC-CTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTC
* ** * * ** * * * * **
94983215 CCTGGCAATGCAGTGGAATAGATTAAAGCCACAACGACGTATCTTACTTCCCCGACATTGTAGTT
191 CCAGGCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTT
* * * * * *
94983280 AACAAA-ACTAAAGCCACAACAGCGAGTGTTACTTCCCTGGTGATGC
256 AAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
*
94983326 AGTGGAACAGATTAAAGTCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTT-AAAAAGATTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTAAAAAAGATTA
* * * * *
94983390 AAGCTACAACAGTGAATCTTACTTCCCTAGCG-GTGCAGTGGAACAGATTAAAGTCACAACGGTG
66 AAGCTACAACAGCGAATCTTACCT-CCAAG-GAGTGCAGTGGACCAGATTAAAGCCACAACGGTG
* *
94983454 AATCTTG-CTCCCCTGACATTGCGGTT-AAAAAGATTAAAGCTACAACAGTGAATCTTACTTCCC
129 AATCTTGCCT-CCCTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
* *
94983517 TA-GCGGTGCAGTGGAACAGATTAAAGTCACAACGGTGAATCTTG-CTCCCCTGACATTGCGGTT
193 -AGGCGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCT-CCCTGACATTGCGGTT
* * *
94983580 -AAAAAGATTAAAGCTACAACAGTGAATCTTACTTCCCTAGCGGTGC
256 AAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
* * *
94983626 AGTGGAACAGATTAAAGCCACACCGGTGAATCTTGCT-TCCTCGACATTGCAGTTAAAAAAGATT
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT-GACATTGCGGTTAAAAAAGATT
* **
94983690 AAAGCCACAATGGCGAATCTTAC
65 AAAGCTACAACAGCGAATCTTAC
94983713 TTTCCAAAAG
Statistics
Matches: 1647, Mismatches: 211, Indels: 79
0.85 0.11 0.04
Matches are distributed among these distances:
299 8 0.00
300 245 0.15
301 336 0.20
302 690 0.42
303 312 0.19
304 10 0.01
305 26 0.02
306 20 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (302 bp):
AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTAAAAAAGATTA
AAGCTACAACAGCGAATCTTACCTCCAAGGAGTGCAGTGGACCAGATTAAAGCCACAACGGTGAA
TCTTGCCTCCCTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGG
CGGTGCAGTGGAACAGATTAAAGCCACGACGGTGAATCTTGCCTCCCTGACATTGCGGTTAAAAA
AGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGC
Found at i:94982230 original size:100 final size:101
Alignment explanation
Indices: 94981489--94983712 Score: 2424
Period size: 100 Copynumber: 22.1 Consensus size: 101
94981479 TGTTTCCTGT
* * * ** *
94981489 GAATCTTACCTCCAAGGC-AGTGTAGTGGACCAGATTAAAGCCCCGTCTGTGAATCTTG-TCTCC
1 GAATCTTACCTCCAAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
94981552 CTGACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGC
64 CTGACATTGCGGTT-AAAAAAGATTAAAGCTACAACAGC
* * * ** *
94981591 GAATCTTACCTCCAAGG-TAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGC-CTCT
1 GAATCTTACCTCCAAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
94981654 CTGACATTGCGGTTACAAAAAGATTAAAGCTACAACAGC
64 CTGACATTGCGGTTA-AAAAAGATTAAAGCTACAACAGC
* * * ** *
94981693 GAATCTTACCTCCAAGG-TAGTGCAGTGGACCATATTAAAGCCATGACGGTGAATCTTGC-CTCT
1 GAATCTTACCTCCAAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
94981756 CTGACATTGCGGTTACAAAAAGATTAAAGCTACAACAGC
64 CTGACATTGCGGTTA-AAAAAGATTAAAGCTACAACAGC
* ** *
94981795 GAATCTTACTTCCCTGGCGATGCAATGGAACAGATTAAAGCCAC-ACGGTGAATCTTGCTCCCCT
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
* *
94981859 GACATTGAGGTT-AAAAAGATTAAAGCTACAGCAGC
66 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * *
94981894 GAATCTTACCTCCAAGG-TAGTGCAGTGGACCAGATTAAAGCCACGACGGTGAATCTTGC-CTCC
1 GAATCTTACCTCCAAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
* * * *
94981957 TTGACATTGCGGTTAAAAAAGATTATAGCTACTATAGC
64 CTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * *
94981995 GAATCTTACCTCTC-AGGCGGTGCAGTGGAGCAGATTAAAGCCACGACGGTGAATCTTGC-CTCC
1 GAATCTTACCTC-CAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
94982058 CTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
64 CTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* ** *
94982096 GAATCTTACTTCCCTGGCGATGCAGTAGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
* *
94982161 GACAGTGCGGTT-AAAAAGATTAAAGCTACAGCAGC
66 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * *
94982196 GAATCTTACCTCCAAGGCAATGTAGTGGACCAGATTAAAGCCACAACGTTGAATCTT-C-CCTCC
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCC-CC
*
94982259 TTGACATTGCGGTTAAAATAGATTAAAGCTACAACAGC
65 -TGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * * * * * *
94982297 AAATCTTATCTCCCAGGTGGTGCAGTGGAGCAGATTAAAGCCACGACGGTGAATCTTAC-CTCCC
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CCC
* * *
94982361 TGACATTGCGGTTAAAAAATATTTAAGCTATAACAGC
65 TGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* ** *
94982398 GAATCTTACTTCCCTGGCGATGCAGTAGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
* *
94982463 GACAGTGCGGTT-AAAAAGATTAAAGCTACAGCAGC
66 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * *
94982498 GAATCTTACCTCCAAGG-AAGTGCAGTGGACCAGATTAAAGCCACAACGATGAATCTAGC-CTCC
1 GAATCTTACCTCCAAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
* * * **
94982561 CTGACATTTAC-ATTAAAAAAGATAAAAGCTACAACAAT
64 CTGACA-TTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * ** *
94982599 GAATCTTACCTCTAAGGCAATGCAGT-GAGTAGATTAAAGCCACGACGGTGAATCTTGC-CTCCC
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CCC
94982662 TGACATTGCGGTTAAAAAAAGATTAAAGCTACAACAGC
65 TGACATTGCGGTT-AAAAAAGATTAAAGCTACAACAGC
* * * * * * * *
94982700 GAATATTATCTCCAAGGCGGTGCAGTGGAGCAGATTAAAGCCACGACAGTTAATCTTGC-CTCTC
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CCC
* *
94982764 TGATATTTCGGTTAAAAAAGATTAAAGCTACAACAGC
65 TGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * *
94982801 GAATCTTACCTCTC-TGGCGATGCAGTGGAGCAGATTAAAGCCACAAC-G-CATATATTGCTTCC
1 GAATCTTACCTC-CAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGA-ATCTTGC-TCC
* * * *
94982863 CC-GACATTGCAGTT-AAAAAGATTAAAGCCACAGCGGC
63 CCTGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * ** * * * *
94982900 GAGTGTTACTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCACAATGGTAAATCTTACTCCACT
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
*
94982965 GACATTGCGGTT-AAAAAGATTAAAGCTACAGCAGC
66 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * *
94983000 GAATCTTACCTCCAAGGC-AGTACAGTGGACCAGATTAAAGCCACGACGGTGAATCGTGC-CTCC
1 GAATCTTACCTCCAAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTC-CC
* *
94983063 CTGACAAAT-CGGTTAAAAAAAGATTAAAGCTACAACAGT
64 CTGAC-ATTGCGGTT-AAAAAAGATTAAAGCTACAACAGC
** * * * * * *
94983102 GAATCTTACCTCCCTGGCAATGCAGTGGAATAGATTAAAGCCACAATGGTAAATCTTACTCCACT
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
*
94983167 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGT
66 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
** * * ** * *
94983203 GAATCTTACCTCCCTGGCAATGCAGTGGAATAGATTAAAGCCACAACGACGTATCTTACTTCCCC
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGC-TCCCC
** * * *
94983268 -GACATTGTAGTTAACAAA-ACTAAAGCCACAACAGC
65 TGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * ** * *
94983303 GAGTGTTACTTCCCTGGTGATGCAGTGGAACAGATTAAAGTCACAACGGTGAATCTTGCTCCCCT
1 GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
*
94983368 GACATTGCGGTT-AAAAAGATTAAAGCTACAACAGT
66 GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * *
94983403 GAATCTTACTTCCCTA-GCGGTGCAGTGGAACAGATTAAAGTCACAACGGTGAATCTTGCTCCCC
1 GAATCTTACCT-CCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCC
*
94983467 TGACATTGCGGTT-AAAAAGATTAAAGCTACAACAGT
65 TGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * *
94983503 GAATCTTACTTCCCTA-GCGGTGCAGTGGAACAGATTAAAGTCACAACGGTGAATCTTGCTCCCC
1 GAATCTTACCT-CCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCC
*
94983567 TGACATTGCGGTT-AAAAAGATTAAAGCTACAACAGT
65 TGACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
* * * * *
94983603 GAATCTTACTTCCCTA-GCGGTGCAGTGGAACAGATTAAAGCCACACCGGTGAATCTTGCT-TCC
1 GAATCTTACCT-CCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCC
* * **
94983666 TCGACATTGCAGTTAAAAAAGATTAAAGCCACAATGGC
65 T-GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
94983704 GAATCTTAC
1 GAATCTTAC
94983713 TTTCCAAAAG
Statistics
Matches: 1854, Mismatches: 219, Indels: 99
0.85 0.10 0.05
Matches are distributed among these distances:
98 4 0.00
99 146 0.08
100 685 0.37
101 649 0.35
102 366 0.20
103 4 0.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (101 bp):
GAATCTTACCTCCAAGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCT
GACATTGCGGTTAAAAAAGATTAAAGCTACAACAGC
Found at i:94982463 original size:50 final size:50
Alignment explanation
Indices: 94981773--94983713 Score: 719
Period size: 50 Copynumber: 38.6 Consensus size: 50
94981763 TGCGGTTACA
* * * * *
94981773 AAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGA-TGCAATGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGC-ATTGCAGTAG
* * * *
94981823 AACAGATTAAAGCCAC-ACGGTGAATCTTGCTCCCCTGACATTG-AGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCA-G-TAG
* * * ** * * *
94981872 AAAAGATTAAAGCTACAGCAGCGAATCTTAC-CTCCAAGGTAGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * * * * * * *
94981922 ACCAGATTAAAGCCACGACGGTGAATCTTGC-CTCCTTGACATTGCGGTTAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAG-TAG
* * * * * * * ** *
94981973 AAAAGATTATAGCTACTATAGCGAATCTTAC-CTCTCAGGCGGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * * * * * *
94982023 AGCAGATTAAAGCCACGACGGTGAATCTTGC-CTCCCTGACATTGCGGTTAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAG-TAG
* * *
94982074 AAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGGCGA-TGCAGTAG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGC-ATTGCAGTAG
* * * * * *
94982124 AACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACAGTGCGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * * ** * * *
94982174 AAAAGATTAAAGCTACAGCAGCGAATCTTAC-CTCCAAGGCAATGTAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * *
94982224 ACCAGATTAAAGCCACAAC-GTTGAATCTT-C-CCTCCTTGACATTGCGGTTA-
1 AAAAGATTAAAGCCACAACAG-TGAATCTTACTCC-CC-TGGCATTGCAG-TAG
* ** * *** *
94982274 AAATAGATTAAAGCTACAACAGCAAATCTTA-TCTCCCAGGTGGTGCAGTGG
1 AAA-AGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * * * * *
94982325 AGCAGATTAAAGCCACGACGGTGAATCTTAC-CTCCCTGACATTGCGGTTAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAG-TAG
* * * * * *
94982376 AAAATATTTAAGCTATAACAGCGAATCTTACTTCCCTGGCGA-TGCAGTAG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGC-ATTGCAGTAG
* * * * * *
94982426 AACAGATTAAAGCCACAACGGTGAATCTTGCTCCCCTGACAGTGCGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * * ** * * *
94982476 AAAAGATTAAAGCTACAGCAGCGAATCTTAC-CTCCAAGGAAGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * * * *
94982526 ACCAGATTAAAGCCACAAC-GATGAATC-TAGC-CTCCCTGACATTTACATTAA
1 AAAAGATTAAAGCCACAACAG-TGAATCTTA-CTC-CCCTGGCA-TTGCAGTAG
* * * * *
94982577 AAAAGATAAAAGCTACAACAATGAATCTTA--CCTCTAAGGCAATGCAGT-G
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCT--GGCATTGCAGTAG
** * * * * * *
94982626 AGTAGATTAAAGCCACGACGGTGAATCTTGC-CTCCCTGACATTGCGGTTAAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAG-T-AG
* * * ** ** *
94982678 AAAAGATTAAAGCTACAACAGCGAATATTA-TCTCCAAGGCGGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * * * * ** * * *
94982728 AGCAGATTAAAGCCACGACAGTTAATCTTGC-CTCTCTGATATTTCGGTTAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAG-TAG
* * * *
94982779 AAAAGATTAAAGCTACAACAGCGAATCTTAC-CTCTCTGGCGA-TGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGC-ATTGCAGTAG
** * * * *
94982829 AGCAGATTAAAGCCACAAC-G-CATATATTGCTTCCCC-GACATTGCAGTTA-
1 AAAAGATTAAAGCCACAACAGTGA-ATCTTAC-TCCCCTGGCATTGCAG-TAG
* * * * * * *
94982878 AAAAGATTAAAGCCACAGCGGCGAGTGTTACTTCCCTGGCGA-TGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGC-ATTGCAGTAG
* ** * * * *
94982928 AACAGATTAAAGCCACAATGGTAAATCTTACTCCACTGACATTGCGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * * ** * * *
94982978 AAAAGATTAAAGCTACAGCAGCGAATCTTAC-CTCCAAGGCAGTACAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
** * * * * * * * *
94983028 ACCAGATTAAAGCCACGACGGTGAATCGTGC-CTCCCTGACAAAT-CGGTTAAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGC-ATTGCAG-T-AG
* * *
94983080 AAAAGATTAAAGCTACAACAGTGAATCTTAC-CTCCCTGGCAATGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
* ** * * * * *
94983130 AATAGATTAAAGCCACAATGGTAAATCTTACTCCACTGACATTGCGGTTAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * *
94983181 AAAAGATTAAAGCTACAACAGTGAATCTTAC-CTCCCTGGCAATGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTC-CCCTGGCATTGCAGTAG
* * *
94983231 AATAGATTAAAGCCACAACGACGT--ATCTTACTTCCCC-GACATTGTAGTTA-
1 AAAAGATTAAAGCCACAAC-A-GTGAATCTTAC-TCCCCTGGCATTGCAG-TAG
* * * * * * *
94983281 ACAAA-ACTAAAGCCACAACAGCGAGTGTTACTTCCCTGGTGA-TGCAGTGG
1 A-AAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGG-CATTGCAGTAG
* * * * * *
94983331 AACAGATTAAAGTCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * * ** *
94983381 AAAAGATTAAAGCTACAACAGTGAATCTTACTTCCCTAGCGGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAGTAG
* * * * * *
94983431 AACAGATTAAAGTCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * * ** *
94983481 AAAAGATTAAAGCTACAACAGTGAATCTTACTTCCCTAGCGGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAGTAG
* * * * * *
94983531 AACAGATTAAAGTCACAACGGTGAATCTTGCTCCCCTGACATTGCGGTTA-
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAG-TAG
* * * ** *
94983581 AAAAGATTAAAGCTACAACAGTGAATCTTACTTCCCTAGCGGTGCAGTGG
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAGTAG
* * * * * * *
94983631 AACAGATTAAAGCCACACCGGTGAATCTTGCT-TCCTCGACATTGCAGTTAA
1 AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCT-GGCATTGCAG-TAG
** *
94983682 AAAAGATTAAAGCCACAATGGCGAATCTTACT
1 AAAAGATTAAAGCCACAACAGTGAATCTTACT
94983714 TTCCAAAAGT
Statistics
Matches: 1334, Mismatches: 466, Indels: 181
0.67 0.24 0.09
Matches are distributed among these distances:
48 6 0.00
49 133 0.10
50 828 0.62
51 288 0.22
52 78 0.06
53 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (50 bp):
AAAAGATTAAAGCCACAACAGTGAATCTTACTCCCCTGGCATTGCAGTAG
Found at i:94985807 original size:21 final size:21
Alignment explanation
Indices: 94985761--94985807 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
94985751 TTAGTTCGCT
*
94985761 TATTCACTTACATATTATTGG
1 TATTCACTTACATAATATTGG
* *
94985782 CATTCACTTGCATAAATATT-G
1 TATTCACTTACAT-AATATTGG
94985803 TATTC
1 TATTC
94985808 GTATATTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.45
Consensus pattern (21 bp):
TATTCACTTACATAATATTGG
Found at i:94991747 original size:19 final size:19
Alignment explanation
Indices: 94991725--94991775 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
94991715 TCATATATTA
* *
94991725 AAAATTTATATAAACTGAT
1 AAAATTTATAAAAACTCAT
* *
94991744 AAAATTCATAAAAATTCAT
1 AAAATTTATAAAAACTCAT
94991763 AAAGATTTATAAA
1 AAA-ATTTATAAA
94991776 TATTATAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (19 bp):
AAAATTTATAAAAACTCAT
Found at i:94991863 original size:12 final size:14
Alignment explanation
Indices: 94991846--94991880 Score: 56
Period size: 12 Copynumber: 2.6 Consensus size: 14
94991836 TTTATCCAAC
94991846 TTATAAAAAA-AT-
1 TTATAAAAAACATA
94991858 TTATAAAAAACATA
1 TTATAAAAAACATA
94991872 TTATAAAAA
1 TTATAAAAA
94991881 CTAATAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
TTATAAAAAACATA
Found at i:94992688 original size:9 final size:9
Alignment explanation
Indices: 94992670--94992750 Score: 56
Period size: 10 Copynumber: 8.6 Consensus size: 9
94992660 TTTAAATGAC
94992670 TTTTTATATA
1 TTTTT-TATA
94992680 TTTTTTATA
1 TTTTTTATA
94992689 -TTTTTATAA
1 TTTTTTAT-A
* *
94992698 TTTATTAGAA
1 TTTTTTA-TA
94992708 TTTTTTATA
1 TTTTTTATA
**
94992717 TTGCTTATAA
1 TTTTTTAT-A
*
94992727 GTTTTTATGA
1 TTTTTTAT-A
*
94992737 ATTTTTATA
1 TTTTTTATA
94992746 TTTTT
1 TTTTT
94992751 GATAAAATTT
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
8 7 0.13
9 17 0.31
10 31 0.56
ACGTcount: A:0.27, C:0.01, G:0.05, T:0.67
Consensus pattern (9 bp):
TTTTTTATA
Found at i:94992692 original size:19 final size:18
Alignment explanation
Indices: 94992670--94992755 Score: 59
Period size: 19 Copynumber: 4.5 Consensus size: 18
94992660 TTTAAATGAC
94992670 TTTTTATATATTTTTTATA
1 TTTTTATA-ATTTTTTATA
* *
94992689 TTTTTATAATTTATTAGAA
1 TTTTTATAATTTTTTA-TA
**
94992708 TTTTT-TATATTGCTTATAA
1 TTTTTATA-ATTTTTTAT-A
94992727 GTTTTTATGAA-TTTTTATA
1 -TTTTTAT-AATTTTTTATA
94992746 TTTTTGATAA
1 TTTTT-ATAA
94992756 AATTTTAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
18 16 0.30
19 24 0.45
20 10 0.19
21 2 0.04
22 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.06, T:0.64
Consensus pattern (18 bp):
TTTTTATAATTTTTTATA
Found at i:94992724 original size:29 final size:29
Alignment explanation
Indices: 94992670--94992747 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 29
94992660 TTTAAATGAC
*
94992670 TTTTTAT-ATATTTTTTATATTTTTATAA-
1 TTTTTATGA-ATTTTTTATATTCTTATAAG
94992698 TTTATTA-GAATTTTTTATATTGCTTATAAG
1 TTT-TTATGAATTTTTTATATT-CTTATAAG
94992728 TTTTTATGAA-TTTTTATATT
1 TTTTTATGAATTTTTTATATT
94992748 TTTGATAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
28 15 0.34
29 23 0.52
30 6 0.14
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.65
Consensus pattern (29 bp):
TTTTTATGAATTTTTTATATTCTTATAAG
Found at i:94992755 original size:29 final size:28
Alignment explanation
Indices: 94992679--94992755 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
94992669 CTTTTTATAT
94992679 ATTTTTTATATTTTTATAATTTATTAGA
1 ATTTTTTATATTTTTATAATTTATTAGA
*
94992707 ATTTTTTATATTGCTTATAAGTTT-TTATGA
1 ATTTTTTATATT-TTTATAA-TTTATTA-GA
94992737 A-TTTTTATATTTTTGATAA
1 ATTTTTTATATTTTT-ATAA
94992756 AATTTTAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
28 14 0.33
29 23 0.53
30 6 0.14
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.62
Consensus pattern (28 bp):
ATTTTTTATATTTTTATAATTTATTAGA
Found at i:94992761 original size:29 final size:28
Alignment explanation
Indices: 94992670--94992770 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 28
94992660 TTTAAATGAC
*
94992670 TTTTTATATATTTTTTATATTTTTAT-AA
1 TTTTTAGA-ATTTTTTATATTTTTATAAA
* *
94992698 TTTATTAGAATTTTTTATATTGCTTATAAG
1 TTT-TTAGAATTTTTTATATT-TTTATAAA
94992728 TTTTTATGAA-TTTTTATATTTTTGATAAA
1 TTTTTA-GAATTTTTTATATTTTT-ATAAA
* *
94992757 ATTTTA-AATATTTT
1 TTTTTAGAATTTTTT
94992771 GAATATGTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
27 2 0.03
28 21 0.35
29 30 0.50
30 7 0.12
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.63
Consensus pattern (28 bp):
TTTTTAGAATTTTTTATATTTTTATAAA
Found at i:94992872 original size:32 final size:32
Alignment explanation
Indices: 94992800--94992865 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
94992790 ATAAAGAAAT
* *
94992800 TATAAA-TTTTTTTATAATTTTTGTAAGTTTA
1 TATAAATTTTTTTTATAATTTTTATAAGTATA
94992831 TATAAATTTTTTTTATAATTTTTATAAGTATA
1 TATAAATTTTTTTTATAATTTTTATAAGTATA
94992863 TAT
1 TAT
94992866 CCATTTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 6 0.19
32 26 0.81
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (32 bp):
TATAAATTTTTTTTATAATTTTTATAAGTATA
Found at i:94996689 original size:20 final size:20
Alignment explanation
Indices: 94996664--94996778 Score: 87
Period size: 20 Copynumber: 5.8 Consensus size: 20
94996654 TTTAAGAATT
94996664 TTTTATTAAATTATATATTA
1 TTTTATTAAATTATATATTA
*
94996684 TTTTA-TAGTATTATATATTA
1 TTTTATTA-AATTATATATTA
* * *
94996704 TGATTTTTTTAATTCATATAATA
1 T--TTTATTAAATT-ATATATTA
* * * *
94996727 -ATAATTATATTA-AGA--A
1 TTTTATTAAATTATATATTA
94996743 TTTTATTAAATTATATATTA
1 TTTTATTAAATTATATATTA
94996763 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
94996779 TTAATAATAA
Statistics
Matches: 71, Mismatches: 15, Indels: 18
0.68 0.14 0.17
Matches are distributed among these distances:
16 1 0.01
17 9 0.13
18 4 0.06
19 3 0.04
20 40 0.56
22 6 0.08
23 8 0.11
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTATTAAATTATATATTA
Found at i:94997026 original size:45 final size:44
Alignment explanation
Indices: 94996935--94997027 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
94996925 ATTACAACAT
*
94996935 CATTCCATTCAACCAAACATAAGAATATTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACATAAGAATACTATTACAGTTCTATTC
*
94996979 CATTCCATTCAACCAAACA-ATTGAATTACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACATA-AGAA-TACTATTACAGTTCTATTC
94997024 CATT
1 CATT
94997028 ACAGCTCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 22 0.49
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (44 bp):
CATTCCATTCAACCAAACATAAGAATACTATTACAGTTCTATTC
Found at i:94997030 original size:16 final size:16
Alignment explanation
Indices: 94997009--94997080 Score: 117
Period size: 16 Copynumber: 4.5 Consensus size: 16
94996999 TTGAATTACT
*
94997009 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
94997025 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCC
*
94997041 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
94997057 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
94997073 ATTACAGC
1 ATTACAGC
94997081 GAACCAAACG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:94997427 original size:28 final size:27
Alignment explanation
Indices: 94997320--94997452 Score: 83
Period size: 28 Copynumber: 4.7 Consensus size: 27
94997310 GCTTAATTGA
94997320 TTAT-AATTTTATATTATTTATAAGTTT
1 TTATGAATTTTATATTATTTATAA-TTT
* *
94997347 TTATAAAATTTTA-AATATTT-TGAATATGTT
1 TTAT-GAATTTTATATTATTTAT--A-AT-TT
* ** **
94997377 TTATTAATTTTATAAAAAATATAATTT
1 TTATGAATTTTATATTATTTATAATTT
94997404 ATTATGAATTTTATATTATTTATAACTTT
1 -TTATGAATTTTATATTATTTATAA-TTT
* * *
94997433 TTATGATTTTTTTATAATTT
1 TTATGAATTTTATATTATTT
94997453 TCAAAAGTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
27 7 0.08
28 44 0.53
29 20 0.24
30 11 0.13
31 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.59
Consensus pattern (27 bp):
TTATGAATTTTATATTATTTATAATTT
Found at i:94998046 original size:19 final size:18
Alignment explanation
Indices: 94998022--94998057 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
94998012 TAATAAATTA
*
94998022 TTTAATATTACAATTTTAT
1 TTTAATAATA-AATTTTAT
94998041 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
94998058 ACAAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:94998329 original size:17 final size:18
Alignment explanation
Indices: 94998292--94998331 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
94998282 CATTATTGAT
**
94998292 TATTAATTTTATATATGA
1 TATTAATTTTATATAAAA
94998310 TATTAATTTT-TATAAAA
1 TATTAATTTTATATAAAA
94998327 TATTA
1 TATTA
94998332 TCACATTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TATTAATTTTATATAAAA
Found at i:94998397 original size:31 final size:34
Alignment explanation
Indices: 94998356--94998424 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
94998346 AAATTTTTAG
* *
94998356 AAAATGATTTTAAA-GAAATTA-CTAAACAACAA
1 AAAATGATTTTAAACAAAATTATCCAAACAACAA
*
94998388 AAAAT-ATTTTAAACAAAATTATCCAAACACCAA
1 AAAATGATTTTAAACAAAATTATCCAAACAACAA
94998421 AAAA
1 AAAA
94998425 AAAATCAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 8 0.25
32 11 0.34
33 13 0.41
ACGTcount: A:0.61, C:0.13, G:0.03, T:0.23
Consensus pattern (34 bp):
AAAATGATTTTAAACAAAATTATCCAAACAACAA
Found at i:94998443 original size:20 final size:20
Alignment explanation
Indices: 94998420--94998457 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94998410 CCAAACACCA
*
94998420 AAAAAAAAATCAATTTTTCC
1 AAAAAAAAAGCAATTTTTCC
*
94998440 AAAAAATAAGCAATTTTT
1 AAAAAAAAAGCAATTTTT
94998458 TAGAAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.32
Consensus pattern (20 bp):
AAAAAAAAAGCAATTTTTCC
Found at i:94998773 original size:29 final size:31
Alignment explanation
Indices: 94998731--94998791 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
94998721 ACAATTAATT
* *
94998731 TTTTTTAATTTAAATAATT-TATAAA-AAATA
1 TTTTTTAATATAAAAAATTAT-TAAATAAATA
94998761 TTTTTTAA-ATAAAAAATTATTAAATAAATA
1 TTTTTTAATATAAAAAATTATTAAATAAATA
94998791 T
1 T
94998792 AAACAACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
TTTTTTAATATAAAAAATTATTAAATAAATA
Found at i:94998822 original size:10 final size:10
Alignment explanation
Indices: 94998807--94998836 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
94998797 ACATAAAAAT
94998807 ATATTTTTTA
1 ATATTTTTTA
94998817 ATA-TTTTTA
1 ATATTTTTTA
94998826 ATATTTTTTA
1 ATATTTTTTA
94998836 A
1 A
94998837 AAAATAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
ATATTTTTTA
Found at i:95002119 original size:98 final size:98
Alignment explanation
Indices: 95001315--95002099 Score: 1237
Period size: 98 Copynumber: 8.0 Consensus size: 98
95001305 AAAAGAAAAG
* * **
95001315 AAACTATTTTAACTTCCAAGTATTTCAAGTTCCAAACCGAGGAATGATGTTCCATATACCAATAT
1 AAACAATTTTAACTT-CAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATAT
** * *
95001380 GGAGGTGCTACTATAAATTTCAGTTGAAGCTAGC
65 GGAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
* * **
95001414 AAACTATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGACTGATACTCCATATGTCAATATG
1 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
* *
95001479 GAGCTGCTACTGTAAATTTCTGTTGAAGCTAGT
66 GAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
* * * *
95001512 AAACTATTTTAACTTCAAGTATTTCAAAATTCAAAACCGAGGAATGATGTTCTATATGTCAATGT
1 AAACAATTTTAACTTCAAGTATTTC-AAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATAT
* *
95001577 GGAGCTGCTACTGTAAATTTCAGTAGAAGCTAGT
65 GGAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
*
95001611 AAACTATTTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATAT
1 AAAC-AATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATAT
*
95001676 GGAGCAGCTACTGTAAATTTCAGTTGAAGCTCGT
65 GGAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
95001710 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
1 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
*
95001775 GAGCAGCTACTGTAAATTTCAGTTGAAGCTCGT
66 GAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
95001808 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
1 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
*
95001873 GAGCAGCTACTGTAAATTTCAGTTGAAGCTCGT
66 GAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
95001906 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
1 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
*
95001971 GAGCAGCTACTGTAAATTTCAGTTGAAGCTCGT
66 GAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
* * * * *
95002004 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGAAATAATGCTCCATATGTAAATACG
1 AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
* * * *
95002069 GAGCTGATACTGTAAATCTCAGATGAAGCTA
66 GAGCAGCTACTGTAAATTTCAGTTGAAGCTA
95002100 ACAAAGTATT
Statistics
Matches: 647, Mismatches: 37, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
98 473 0.73
99 155 0.24
100 19 0.03
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (98 bp):
AAACAATTTTAACTTCAAGTATTTCAAGTTCAAAACCGAGGAATGATGTTCCATATGTCAATATG
GAGCAGCTACTGTAAATTTCAGTTGAAGCTAGT
Found at i:95002156 original size:29 final size:29
Alignment explanation
Indices: 95002112--95002173 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
95002102 AAAGTATTTC
* *
95002112 AAGTTCAAAACTAAGGACTGATGTTCCAT
1 AAGTTCAAAACCAAGGACTGATATTCCAT
*
95002141 AAGTTCAAAACCAAGGAGTGATATTCCAT
1 AAGTTCAAAACCAAGGACTGATATTCCAT
95002170 AAGT
1 AAGT
95002174 CAATATGGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (29 bp):
AAGTTCAAAACCAAGGACTGATATTCCAT
Found at i:95004920 original size:19 final size:18
Alignment explanation
Indices: 95004877--95004920 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
95004867 GATTTGATAT
* *
95004877 TAAAAGGTTGTTAATAAA
1 TAAAATGTTATTAATAAA
95004895 TAAAAATGTTATTAATATAA
1 T-AAAATGTTATTAATA-AA
95004915 TAAAAT
1 TAAAAT
95004921 AAAACTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 1 0.05
19 18 0.82
20 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (18 bp):
TAAAATGTTATTAATAAA
Found at i:95020163 original size:47 final size:47
Alignment explanation
Indices: 95020097--95020406 Score: 557
Period size: 47 Copynumber: 6.6 Consensus size: 47
95020087 GAAATGATAG
95020097 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95020144 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
95020193 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
95020240 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
95020287 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
95020334 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
95020381 TAAGGCCTAATAGCCGATGTGATGAA
1 TAAGGCCTAATAGCCGATGTGATGAA
95020407 GATAAGGCCT
Statistics
Matches: 253, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 206 0.81
49 47 0.19
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:95020376 original size:143 final size:140
Alignment explanation
Indices: 95020097--95020406 Score: 550
Period size: 143 Copynumber: 2.2 Consensus size: 140
95020087 GAAATGATAG
95020097 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
95020162 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
95020227 TGTATATGTGTGA
130 TGTATA--TGTGA
95020240 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
95020305 GTGATGAATGTGAAAGTG-TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
66 GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
95020369 GTATATATGTGA
131 G--TATATGTGA
95020381 TAAGGCCTAATAGCCGATGTGATGAA
1 TAAGGCCTAATAGCCGATGTGATGAA
95020407 GATAAGGCCT
Statistics
Matches: 163, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
141 76 0.47
143 87 0.53
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (140 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
GTATATGTGA
Found at i:95020419 original size:28 final size:28
Alignment explanation
Indices: 95020379--95020434 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
95020369 GTATATATGT
95020379 GATAAGGCCTAATAGCCGATGTGATGAA
1 GATAAGGCCTAATAGCCGATGTGATGAA
*
95020407 GATAAGGCCTAATGGCCGATGTGATGAA
1 GATAAGGCCTAATAGCCGATGTGATGAA
95020435 TGTGAAAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.30, T:0.21
Consensus pattern (28 bp):
GATAAGGCCTAATAGCCGATGTGATGAA
Found at i:95020419 original size:75 final size:75
Alignment explanation
Indices: 95020332--95020481 Score: 273
Period size: 75 Copynumber: 2.0 Consensus size: 75
95020322 GTATATGTGT
95020332 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
95020397 ATGTGATGAA
66 ATGTGATGAA
* * *
95020407 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATCGCCG
1 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
95020472 ATGTGATGAA
66 ATGTGATGAA
95020482 TGTGAAAGTG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (75 bp):
GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
ATGTGATGAA
Found at i:95020425 original size:122 final size:122
Alignment explanation
Indices: 95020285--95020528 Score: 461
Period size: 122 Copynumber: 2.0 Consensus size: 122
95020275 GTATATATGT
95020285 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
*
95020350 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAA
*
95020407 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATCGCCG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
*
95020472 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGAA
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAA
95020529 TGTGAAAGTG
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (122 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAA
Found at i:95020427 original size:169 final size:169
Alignment explanation
Indices: 95020238--95020549 Score: 570
Period size: 169 Copynumber: 1.8 Consensus size: 169
95020228 GTATATGTGT
*
95020238 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCG
* *
95020303 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAATGTGAAAG
95020368 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
131 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
* *
95020407 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATCGCCG
1 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCG
*
95020472 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAATGTGAAAG
95020537 TGTATATATGTGA
131 TGTATATATGTGA
95020550 CGGGGCCGAG
Statistics
Matches: 137, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
169 137 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (169 bp):
GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
Found at i:95020460 original size:47 final size:47
Alignment explanation
Indices: 95020407--95020600 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
95020397 ATGTGATGAA
*
95020407 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
95020454 GATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
95020501 GATAAGGACTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*** * * * * * * *
95020548 GACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
95020595 GATAAG
1 GATAAG
95020601 TCCCGAAGGG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
Found at i:95020581 original size:216 final size:216
Alignment explanation
Indices: 95020191--95020600 Score: 694
Period size: 216 Copynumber: 1.9 Consensus size: 216
95020181 ATATATATGT
95020191 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
*
95020256 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * *
95020321 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
131 TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATAAATGTGATAAGG
95020386 CCTAATAGCCGATGTGATGAA
196 CCTAATAGCCGATGTGATGAA
*
95020407 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATCGCCG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
95020472 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAG
** * * *
95020537 TGTATATATGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
131 TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATAAATGTGATAAG
95020601 TCCCGAAGGG
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
216 180 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (216 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGCATAAATGTGATAAGG
CCTAATAGCCGATGTGATGAA
Found at i:95020775 original size:37 final size:37
Alignment explanation
Indices: 95020719--95020797 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
95020709 CCGAGCTCTA
* *
95020719 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
95020756 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
95020793 AAGAC
1 AAGAC
95020798 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:95026213 original size:23 final size:22
Alignment explanation
Indices: 95026186--95026230 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
95026176 AAAATATATT
* *
95026186 AAATACATATATTTTTATTTTTA
1 AAATACA-ATAGTTTTAGTTTTA
*
95026209 AAATATAATAGTTTTAGTTTTA
1 AAATACAATAGTTTTAGTTTTA
95026231 TACAATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (22 bp):
AAATACAATAGTTTTAGTTTTA
Found at i:95027312 original size:39 final size:39
Alignment explanation
Indices: 95027269--95027349 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
95027259 ACATAGTTAA
95027269 TAAAAAGAAAAGAAGAAAAAGTAAAGAAATATATATAAG
1 TAAAAAGAAAAGAAGAAAAAGTAAAGAAATATATATAAG
95027308 TAAAAAGAAAAGAAGAAAAAGTAAAGAAATATATATAAG
1 TAAAAAGAAAAGAAGAAAAAGTAAAGAAATATATATAAG
95027347 TAA
1 TAA
95027350 GTATGTTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.16
Consensus pattern (39 bp):
TAAAAAGAAAAGAAGAAAAAGTAAAGAAATATATATAAG
Found at i:95030430 original size:41 final size:41
Alignment explanation
Indices: 95030385--95030475 Score: 155
Period size: 41 Copynumber: 2.2 Consensus size: 41
95030375 ACTGGCACTT
*
95030385 AGCCTGCTAGACATATAGTCTGAAATATTTCACCGGCATTA
1 AGCCTGCTAGACATATAGTCTGAAATATTTCACCGGCAATA
* *
95030426 AGCCTGCTAGACATATAGTCTGAAGTGTTTCACCGGCAATA
1 AGCCTGCTAGACATATAGTCTGAAATATTTCACCGGCAATA
95030467 AGCCTGCTA
1 AGCCTGCTA
95030476 AGCGCTATGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACATATAGTCTGAAATATTTCACCGGCAATA
Found at i:95033007 original size:21 final size:21
Alignment explanation
Indices: 95032950--95033007 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
95032940 ACATGGTTTG
* *
95032950 CTCACACGGCCACGTAACTTAT
1 CTCACACGG-CATGTGACTTAT
95032972 C-CACACGGCAGTGTGAC-TAT
1 CTCACACGGCA-TGTGACTTAT
95032992 CTCACACGGTCATGTG
1 CTCACACGG-CATGTG
95033008 GCAAGGCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 6 0.19
21 22 0.71
22 3 0.10
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (21 bp):
CTCACACGGCATGTGACTTAT
Found at i:95052888 original size:29 final size:29
Alignment explanation
Indices: 95052842--95052901 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
95052832 CGAGTTACCT
*
95052842 TGGAATGTTTTTCCGAATATTATTAAGCA
1 TGGAATATTTTTCCGAATATTATTAAGCA
*
95052871 TGGAATATTTTTCTGAATATTATTAAGCA
1 TGGAATATTTTTCCGAATATTATTAAGCA
95052900 TG
1 TG
95052902 ATGATAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (29 bp):
TGGAATATTTTTCCGAATATTATTAAGCA
Found at i:95065656 original size:45 final size:45
Alignment explanation
Indices: 95065622--95065752 Score: 163
Period size: 45 Copynumber: 2.9 Consensus size: 45
95065612 TTTGTCTGAT
** *
95065622 TCATGATACCATGGCGTCTTTCAACTCTGGTCTTACTCGTTAGAA
1 TCATGATACCATAACGTCTTTCAACTATGGTCTTACTCGTTAGAA
* * * * *
95065667 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTTGCTAAAA
1 TCATGATACCATAACGTCTTTCAACTATGGTCTTACTCGTTAGAA
** *
95065712 TTGTGATGCCATAACGTCTTTCAACTATGGTCTTACTCGTT
1 TCATGATACCATAACGTCTTTCAACTATGGTCTTACTCGTT
95065753 TTCGGTATGG
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (45 bp):
TCATGATACCATAACGTCTTTCAACTATGGTCTTACTCGTTAGAA
Found at i:95065767 original size:45 final size:45
Alignment explanation
Indices: 95065636--95065836 Score: 160
Period size: 45 Copynumber: 4.5 Consensus size: 45
95065626 GATACCATGG
* *
95065636 CGTCTTTCAACTCTGGTCTTACTCG--TTAGAATCATGATGCCATAA
1 CGTCTTTCAACTATGGTCTTACTCGTTTTAG-GT-ATGATGCCATAA
* * * ** ** *
95065681 CGTCTTTCAGCTATGGTCTTACTTGCTAAAATTGTGATGCCATAA
1 CGTCTTTCAACTATGGTCTTACTCGTTTTAGGTATGATGCCATAA
* *
95065726 CGTCTTTCAACTATGGTCTTACTCGTTTTCGGTATGGTGCCAT-A
1 CGTCTTTCAACTATGGTCTTACTCGTTTTAGGTATGATGCCATAA
* * * * *
95065770 GGTTCTTTCAACTACGGTCTTATTTAGTTCT-GGTAT-AGTGCCATAA
1 CG-TCTTTCAACTATGGTCTTA-CTCGTTTTAGGTATGA-TGCCATAA
*
95065816 TGTCTTTCAACTATGGTCTTA
1 CGTCTTTCAACTATGGTCTTA
95065837 TTTGTTTCAT
Statistics
Matches: 124, Mismatches: 26, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
44 2 0.02
45 113 0.91
46 8 0.06
47 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (45 bp):
CGTCTTTCAACTATGGTCTTACTCGTTTTAGGTATGATGCCATAA
Found at i:95067795 original size:42 final size:42
Alignment explanation
Indices: 95067736--95067821 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
95067726 TCTTGTTGTG
*
95067736 TTATGCCATGATAGGGAACTATTTTTCATAATGATTTGTATA
1 TTATGCCATGATAGGGAACTATTTTGCATAATGATTTGTATA
95067778 TTATGCCATGATAGGGAACTATTTTGCATAATGATTTGTATA
1 TTATGCCATGATAGGGAACTATTTTGCATAATGATTTGTATA
95067820 TT
1 TT
95067822 TGTTAATTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (42 bp):
TTATGCCATGATAGGGAACTATTTTGCATAATGATTTGTATA
Found at i:95067811 original size:23 final size:23
Alignment explanation
Indices: 95067743--95067812 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 23
95067733 GTGTTATGCC
*
95067743 ATGATAGGGAACTATTTTTCATA
1 ATGATAGGGAACTATTTTGCATA
** * * *
95067766 ATGAT-TTGTA-TATTATGC--C
1 ATGATAGGGAACTATTTTGCATA
95067785 ATGATAGGGAACTATTTTGCATA
1 ATGATAGGGAACTATTTTGCATA
95067808 ATGAT
1 ATGAT
95067813 TTGTATATTT
Statistics
Matches: 32, Mismatches: 11, Indels: 8
0.63 0.22 0.16
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 13 0.41
22 2 0.06
23 10 0.31
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (23 bp):
ATGATAGGGAACTATTTTGCATA
Found at i:95068104 original size:46 final size:46
Alignment explanation
Indices: 95068051--95068230 Score: 146
Period size: 46 Copynumber: 3.9 Consensus size: 46
95068041 GTTCTTGCCC
*
95068051 AGGTTCCCAATTCCTGCATATGTTGCGGACTGGAGAATACAGATTT
1 AGGTTCCCAACTCCTGCATATGTTGCGGACTGGAGAATACAGATTT
* ** * ** * * *
95068097 AGGTTCCCAATTCCTATATATGTAGCAAACTAGAGAATACAAATTC
1 AGGTTCCCAACTCCTGCATATGTTGCGGACTGGAGAATACAGATTT
** * * * * *
95068143 AAATTCCCAGCTCTTCCATATGTTGTGGACTGAAGAATACATG-TTT
1 AGGTTCCCAACTCCTGCATATGTTGCGGACTGGAGAATACA-GATTT
* * * * *
95068189 AGTTTCCCAGCTCTTGTATATGTTGCGGATTGGAGAATACAG
1 AGGTTCCCAACTCCTGCATATGTTGCGGACTGGAGAATACAG
95068231 TAATATTAAA
Statistics
Matches: 103, Mismatches: 30, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
45 1 0.01
46 102 0.99
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (46 bp):
AGGTTCCCAACTCCTGCATATGTTGCGGACTGGAGAATACAGATTT
Found at i:95080579 original size:24 final size:23
Alignment explanation
Indices: 95080552--95080605 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
95080542 TGCATGTTTA
95080552 TTTCTTGTTTTATGTTTAGTTT-GT
1 TTTCTT-TTTT-TGTTTAGTTTAGT
**
95080576 TTTCATTTTTTTGTTTTTTTTAGT
1 TTTC-TTTTTTTGTTTAGTTTAGT
95080600 TTTCTT
1 TTTCTT
95080606 AACGATAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.38
24 14 0.54
25 2 0.08
ACGTcount: A:0.07, C:0.06, G:0.11, T:0.76
Consensus pattern (23 bp):
TTTCTTTTTTTGTTTAGTTTAGT
Found at i:95082416 original size:39 final size:39
Alignment explanation
Indices: 95082357--95082472 Score: 153
Period size: 39 Copynumber: 3.0 Consensus size: 39
95082347 AAGTGTCAAT
*
95082357 TTATTGTGATATATGCTTGAATATTATGTGATTATATGA
1 TTATTGTGATCTATGCTTGAATATTATGTGATTATATGA
* *
95082396 TTATTATGATCTATGTTTGAATATTATGTGATTATATGA
1 TTATTGTGATCTATGCTTGAATATTATGTGATTATATGA
* * * *
95082435 GTATTGTGATAC-ATGCTTAAACATTAGGTGATTATATG
1 TTATTGTGAT-CTATGCTTGAATATTATGTGATTATATG
95082473 TGTAATGTGA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
39 66 0.99
40 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (39 bp):
TTATTGTGATCTATGCTTGAATATTATGTGATTATATGA
Found at i:95082482 original size:39 final size:39
Alignment explanation
Indices: 95082358--95082494 Score: 152
Period size: 39 Copynumber: 3.5 Consensus size: 39
95082348 AGTGTCAATT
* *
95082358 TATTGTGATATATGCTTGAATATTATGTGATTATATGAT-
1 TATTGTGATACATGCTTAAATATTATGTGATTATATG-TG
* * * *
95082397 TATTATGAT-CTATGTTTGAATATTATGTGATTATATGAG
1 TATTGTGATAC-ATGCTTAAATATTATGTGATTATATGTG
* *
95082436 TATTGTGATACATGCTTAAACATTAGGTGATTATATGTG
1 TATTGTGATACATGCTTAAATATTATGTGATTATATGTG
* *
95082475 TAATGTGATACAAGCTTAAA
1 TATTGTGATACATGCTTAAA
95082495 AGTGAATATG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 82 0.99
40 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (39 bp):
TATTGTGATACATGCTTAAATATTATGTGATTATATGTG
Found at i:95091493 original size:20 final size:22
Alignment explanation
Indices: 95091470--95091513 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
95091460 TTTAGTAAAA
*
95091470 ATAAAAT-AAT-TTTCATATTT
1 ATAAAATAAATATTTCATAATT
*
95091490 ATAAATTAAATATTTCATAATT
1 ATAAAATAAATATTTCATAATT
95091512 AT
1 AT
95091514 TCAATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAAATAAATATTTCATAATT
Found at i:95091508 original size:22 final size:23
Alignment explanation
Indices: 95091480--95091523 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
95091470 ATAAAATAAT
*
95091480 TTTCATATTTA-TAAATTAAATA
1 TTTCATAATTATTAAATTAAATA
*
95091502 TTTCATAATTATTCAATTAAAT
1 TTTCATAATTATTAAATTAAAT
95091524 GCAAAGATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTCATAATTATTAAATTAAATA
Found at i:95094024 original size:46 final size:46
Alignment explanation
Indices: 95093914--95095692 Score: 518
Period size: 44 Copynumber: 40.5 Consensus size: 46
95093904 ATTTTAATCC
* * ** * *
95093914 ACTCCACTGTAATCTCAGAGAGATAGGAT-TACCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *
95093958 GCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * *
95094004 ATTCCACTGTAATCTTAGGGAGATAAGACCT--GA-T-GT-GATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* ** ** * *
95094045 ACTCTACTGTAA-CTTCATAGAGATAAGATCCT-TTATT-TT-AATCC
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAAATTCTTCGATCT
* * * ** * *
95094089 GCTCCACTGTAATCTCAAGGAGATAGGAT-TACCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * *
95094133 GCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * * *
95094179 ATTCCACTGTAATCTCAGGGAGCTAGGACCT--GA---TGCGATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * ** * *
95094220 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-AATCC
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAAATTCTTCGATCT
* * * ** * *
95094264 GCTCCACTGTAATCTCAAGGAGATAGGAT-TACCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * * *
95094308 GCTCCGCTGTAATCTCAGAGAGATAAGATTTGAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * * *
95094354 ATTCCACTGTAATCTCAGGGAGCTAGGACCT--GA---TGCGATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * ** *
95094395 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-AATGC-
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAAATTCTTCGAT-CT
* * * *
95094439 GCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * * *
95094485 ATTCCACTGTAATCTCAGGGAGCTAGGACCT--GA---TGCGATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * ** *
95094526 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-AATGC-
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAAATTCTTCGAT-CT
* * ** * *
95094570 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACCAGT-TTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * *
95094614 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * * *
95094660 ATTCCACTGTAATCTTAGGGAGATAAGACCT--GA-T-GT-GATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* ** ** * *
95094701 ACTCTACTGTAA-CTTCATAGAGATAAGATCCT-TTATT-TT-AATCC
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAAATTCTTCGATCT
* * ** * *
95094745 ACTCCACTGTAATCTCAGAGAGATAGGAT-TACCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * *
95094789 GCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * * *
95094835 ATTCCACTGTAATCTCAGGGAGATAAGACCT--GA---TGCGATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * ** * *
95094876 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TT-AATCC
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAAATTCTTCGATCT
* * *** * *
95094920 GCTCCACTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95094964 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095008 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095052 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095096 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095140 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095184 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095228 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095272 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095316 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095360 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095404 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095448 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095492 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095536 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095580 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
* * *** * *
95095624 ACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
*
95095668 ACTCCGCTGTAATCTCAGGGAGATA
1 ACTCCACTGTAATCTCAGGGAGATA
95095693 GGATTCACCA
Statistics
Matches: 1463, Mismatches: 207, Indels: 130
0.81 0.12 0.07
Matches are distributed among these distances:
40 6 0.00
41 160 0.11
42 19 0.01
43 26 0.02
44 1039 0.71
45 29 0.02
46 184 0.13
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (46 bp):
ACTCCACTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
Found at i:95094028 original size:175 final size:175
Alignment explanation
Indices: 95093799--95094468 Score: 1126
Period size: 175 Copynumber: 3.8 Consensus size: 175
95093789 GCTACTGTTT
* ** * * *
95093799 AGGGAGACAAGATCTGTAATTCTTCGGTTTATTCCACTGTAATCTCATGGAGATAAGACCTGACG
1 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* *
95093864 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
95093929 C-AGAGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
131 CAAG-GAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
*
95093974 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTTAGGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
* *
95094039 TGATCTACTCTACTGTAACTTCATAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
*
95094104 CAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTT
131 CAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
* *
95094149 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGCTAGGACCTGATG
1 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
95094214 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
95094279 CAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
131 CAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
* * * * *
95094324 AGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGCTAGGACCTGATG
1 AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
*
95094389 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATGCGCTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
* *
95094454 CAGGGAGATAAGATT
131 CAAGGAGATAGGATT
95094469 TGAAATTCTT
Statistics
Matches: 470, Mismatches: 24, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
175 468 1.00
176 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (175 bp):
AGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
CAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
Found at i:95094332 original size:88 final size:88
Alignment explanation
Indices: 95093909--95094337 Score: 128
Period size: 87 Copynumber: 4.9 Consensus size: 88
95093899 CCTTTATTTT
* * * *
95093909 AATCCACTCCACTGTAATCTCAGAGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTACTCCGCTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTACTCCGCTGTAATCTC
* *** *
95093974 AGGGAGATAAGATCTAAAATTCTTC
66 AGGGAGATAGGAT-TCCCA-GCTTC
** * * * * * * * **
95093999 GGTCTATTCCACTGTAATCTTAGGGAGATA--A-GACCTGATGT-GATCTACTCTACTGTAA-CT
1 AATCTACTCCGCTGTAATCTCAGGGAGATAGGATTACCAGCT-TCAATCTACTCCGCTGTAATC-
** * * * *
95094059 TCATAGAGATAAGA-TCCTTTA-TTTT
64 TCAGGGAGATAGGATTCC--CAGCTTC
** * * * *
95094084 AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTT
1 AATCTACTCCGCTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTACTCCGCTGTAATCTC
* *** *
95094149 AGGGAGATAAGATCTAAAATTCTTC
66 AGGGAGATAGGAT-TCCCA-GCTTC
** * * * * * * * **
95094174 GGTCTATTCCACTGTAATCTCAGGGAGCTAGG---ACCTGATGCGATCTACTCTACTGTAA-CTT
1 AATCTACTCCGCTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTACTCCGCTGTAATC-T
* * * * *
95094235 CAGAGAGATAAGA-TCCTTTA-TTTT
65 CAGGGAGATAGGATTCC--CAGCTTC
** * * *
95094259 AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTACTCCGCTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTACTCCGCTGTAATCTC
* *
95094324 AGAGAGATAAGATT
66 AGGGAGATAGGATT
95094338 TGAAATTCTT
Statistics
Matches: 241, Mismatches: 77, Indels: 43
0.67 0.21 0.12
Matches are distributed among these distances:
85 54 0.22
86 2 0.01
87 65 0.27
88 65 0.27
89 3 0.01
90 52 0.22
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (88 bp):
AATCTACTCCGCTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTACTCCGCTGTAATCTC
AGGGAGATAGGATTCCCAGCTTC
Found at i:95094479 original size:306 final size:306
Alignment explanation
Indices: 95094128--95094774 Score: 1132
Period size: 306 Copynumber: 2.1 Consensus size: 306
95094118 TACCAGCTTC
* * * *
95094128 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
95094193 TCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 TCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
95094258 TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
131 TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
* *
95094323 CAGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGCTAGGACCTGAT
196 CAGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
95094388 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
261 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
* *
95094434 AATGCGCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
95094499 TCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 TCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
* * *
95094564 TAATGCGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGTTTCAATCTGCTCCGCTGTAATCT
131 TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
* *
95094629 CAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTTAGGGAGATAAGACCTGAT
196 CAGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
* *
95094694 GTGATCTACTCTACTGTAACTTCATAGAGATAAGATCCTTTATTTT
261 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
* * *
95094740 AATCCACTCCACTGTAATCTCAGAGAGATAGGATT
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATT
95094775 ACCAGCTTCA
Statistics
Matches: 322, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
306 322 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (306 bp):
AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
TCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
CAGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
Found at i:95094503 original size:131 final size:131
Alignment explanation
Indices: 95094308--95094599 Score: 557
Period size: 131 Copynumber: 2.2 Consensus size: 131
95094298 GCTTCAATCT
* *
95094308 GCTCCGCTGTAATCTCAGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
1 GCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
95094373 GAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATG
66 GAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATG
95094438 C
131 C
95094439 GCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
1 GCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
95094504 GAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATG
66 GAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATG
95094569 C
131 C
*
95094570 GCTCCACTGTAATCTCAGGGAGATAGGATT
1 GCTCCACTGTAATCTCAGGGAGATAAGATT
95094600 ACCAGTTTCA
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 158 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (131 bp):
GCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
GAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATG
C
Found at i:95094581 original size:175 final size:175
Alignment explanation
Indices: 95094439--95095697 Score: 992
Period size: 176 Copynumber: 7.2 Consensus size: 175
95094429 ATTTTAATGC
*
95094439 GCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* * *
95094504 GAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATG
66 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
*
95094569 CGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGTTTCAATCT
131 CGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
*
95094614 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTTAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* *
95094679 GAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCATAGAGATAAGATCCTTTATTTTAATC
66 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
* *
95094744 CACTCCACTGTAATCTCAGAGAGATAGGATTACCAGCTTCAATCT
131 CGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
* * *
95094789 GCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
95094854 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
66 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
* * *
95094919 CGCTCCACTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCT
131 CGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
* * *** * ** * *
95094964 ACTCCGCTGTAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTACTCCGCTGTAATCTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* * * * * ** * * * *
95095027 GAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGATTCC--CAGCT
66 GAGATAAGA---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTA-TT
* ** * * * *
95095089 TCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCT
125 TTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
* * *** * ** * *
95095140 ACTCCGCTGTAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTACTCCGCTGTAATCTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* * * * * ** * * * *
95095203 GAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGATTCC--CAGCT
66 GAGATAAGA---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTA-TT
* ** * * * *
95095265 TCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCT
125 TTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
* * *** * ** * *
95095316 ACTCCGCTGTAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTACTCCGCTGTAATCTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* * * * * ** * * * *
95095379 GAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGATTCC--CAGCT
66 GAGATAAGA---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTA-TT
* ** * * * *
95095441 TCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCT
125 TTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
* * *** * ** * *
95095492 ACTCCGCTGTAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTACTCCGCTGTAATCTCAGG
1 GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
* * * * * ** * * * *
95095555 GAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGATTCC--CAGCT
66 GAGATAAGA---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTA-TT
* ** * * * *
95095617 TCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCT
125 TTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
* *
95095668 ACTCCGCTGTAATCTCAGGGAGATAGGATT
1 GCTCCGCTGTAATCTCAGGGAGATAAGATT
95095698 CACCATCTTT
Statistics
Matches: 1031, Mismatches: 46, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
173 32 0.03
174 2 0.00
175 358 0.35
176 635 0.62
177 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (175 bp):
GCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGG
GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
CGCTCCACTGTAATCTCAGAGAGATAGGATTACCAGTTTCAATCT
Found at i:95094581 original size:350 final size:347
Alignment explanation
Indices: 95093884--95095384 Score: 1135
Period size: 350 Copynumber: 4.3 Consensus size: 347
95093874 TACTGCAACT
*
95093884 TCAGAGAGATAAGA-TCCTTTA-TTTTAATCCACTCCACTGTAATCTC-AGAGAGATAGGATTAC
1 TCAGAGAGATAAGATTCC--TAGTTTCAATCCACTCCACTGTAATCTCAAG-GAGATAGGATTAC
* *
95093946 CAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCAC
63 CAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCAC
* *
95094011 TGTAATCTTAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCATAGAGATAAGATCC
128 TGTAATCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC
* * * * ** ** *
95094076 TTTATTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGA-TTACCA-GCTTCAATCTGCTCCG
193 TTTATTTTAAT-CGCTCCACTGTAATCTCAGGGAGATAAGATTTA-AATTCTTCGGTCTATTCCA
* * * * * * * * *
95094139 CTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAA-TCTCAGGGAGCT
256 CTGTAATCTCAGGGAGATAAGACCT--GA---TGCGATCTACTCTACTGTAACT-TCAGAGAGAT
* * *** * *
95094203 AGGA-CC-TGA-TGCGATCTACTCTACTGTAA-C
315 AAGATCCTTTATTTTAATC-GCTCCACTGTAATC
* *
95094233 TTCAGAGAGATAAGA-TCCTTTA-TTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTAC
1 -TCAGAGAGATAAGATTCC--TAGTTTCAATCCACTCCACTGTAATCTCAAGGAGATAGGATTAC
* * *
95094296 CAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATTTGAAATTCTTCGGTCTATTCCAC
63 CAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCAC
* * *
95094361 TGTAATCTCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC
128 TGTAATCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC
95094426 TTTATTTTAATGCGCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCA
193 TTTATTTTAAT-CGCTCCACTGTAATCTCAGGGAGATAAGATTT-AAATTCTTCGGTCTATTCCA
* *
95094491 CTGTAATCTCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
256 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
95094556 CTTTATTTTAATGCGCTCCACTGTAATC
321 CTTTATTTTAAT-CGCTCCACTGTAATC
* * ** * * *
95094584 TCAGGGAGATAGGATTACC-AGTTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGA-
1 TCAGAGAGATAAGATT-CCTAGTTTCAATCCACTCCACTGTAATCTCAAGGAGATAGGA-TT-AC
* * ** * * * * * * * *
95094647 AATTCTTCGGTCTATTCCACTGTAATCTTAGGGAGATAAGACCTG--A-T-GT-GATCTACTCTA
63 CA-GCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCA
** * * * * *
95094707 CTGTAA-CTTCATAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAA-TCTCAGAGAGATA
127 CTGTAATC-TCAGGGAGATAAGA-CC-TGA-TGTGATCTACTCTACTGTAACT-TCAGAGAGATA
* * * * * *
95094770 GGATTACC---AGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGG
187 AGA-T-CCTTTA-TTTTAATC-GCTCCACTGTAATCTCAGGGAGATAAGAT-TTAAATTCTTCGG
95094832 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
247 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
95094897 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
312 GATAAGATCCTTTATTTTAAT-CGCTCCACTGTAATC
* * * * * * * *
95094934 TCAGGGAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAG
1 TCAGAGAGATAAGATTCCTAGTTTCAATCCACTCCACTGTAATCTCAAGGAGATAGGATTACCAG
* *** * ** * *
95094999 CTTCAATCTACTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCTACTCCGCTGT
66 CTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGT
* * * * ** * *
95095062 AATCTCAGGGAGATAGGATTCCCAGCT-TCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGAT
131 AATCTCAGGGAGATAAGA---CCTGATGT-GATCTACTCTACTGTAACT-TCAGAGAGATAAGA-
* * * * * * *** * ** *
95095125 TCC--CAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCA-GCTTCAATCTACT
190 TCCTTTA-TTTTAATC-GCTCCACTGTAATCTCAGGGAGATAAGATTTAAATTCTTCGGTCTATT
* * * * * * ** *
95095187 CCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGA
253 CCACTGTAATCTCAGGGAGATAAGA---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGA
* * * * * *
95095251 TAGGATTCC--CAGCTTCAATCTACTCCGCTGTAATC
314 TAAGA-TCCTTTA-TTTTAATC-GCTCCACTGTAATC
* * * * * * * *
95095286 TCAGGGAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAG
1 TCAGAGAGATAAGATTCCTAGTTTCAATCCACTCCACTGTAATCTCAAGGAGATAGGATTACCAG
95095351 CTTCAATCTACTCCGCTGTAATCTCAGGGAGATA
66 CTTCAATCTACTCCGCTGTAATCTCAGGGAGATA
95095385 GGATTCCCAG
Statistics
Matches: 975, Mismatches: 132, Indels: 86
0.82 0.11 0.07
Matches are distributed among these distances:
346 1 0.00
347 52 0.05
348 37 0.04
349 47 0.05
350 505 0.52
351 111 0.11
352 217 0.22
353 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (347 bp):
TCAGAGAGATAAGATTCCTAGTTTCAATCCACTCCACTGTAATCTCAAGGAGATAGGATTACCAG
CTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGT
AATCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAATTCTTCGGTCTATTCCACTGTA
ATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
TTTTAATCGCTCCACTGTAATC
Found at i:95094827 original size:481 final size:480
Alignment explanation
Indices: 95093953--95095296 Score: 1765
Period size: 481 Copynumber: 2.8 Consensus size: 480
95093943 TACCAGCTTC
* * *
95093953 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
* * * *
95094018 TTAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCATAGAGATAAGATCCTTTATTT
66 TCAGGGAGATAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
*
95094083 TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
131 TAAT-CGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
* * * *
95094148 TAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGCTAGGACCTGAT
195 CAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
*
95094213 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
260 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATC
* *
95094278 TCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATTTGAAA
325 TCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATCTAAAA
* *
95094343 TTCTTCGGTCTATTCCACTGTAATCTCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAAC
390 TTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAAC
95094408 TTCAGAGAGATAAGATCCTTTATTTT
455 TTCAGAGAGATAAGATCCTTTATTTT
* *
95094434 AATGCGCTCCACTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
*
95094499 TCAGGGAGCTAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 TCAGGGAGATAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
*
95094564 TAATGCGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGTTTCAATCTGCTCCGCTGTAATCT
131 TAAT-CGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCT
* *
95094629 CAGGGAGATAAGATTTGAAATTCTTCGGTCTATTCCACTGTAATCTTAGGGAGATAAGACCTGAT
195 CAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
* *
95094694 GTGATCTACTCTACTGTAACTTCATAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATC
260 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATC
* *
95094759 TC-AGAGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTAAA
325 TCAAG-GAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATCTAAA
95094823 ATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
389 ATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
95094888 CTTCAGAGAGATAAGATCCTTTATTTT
454 CTTCAGAGAGATAAGATCCTTTATTTT
* *** * ** * *
95094915 AATCCGCTCCACTGTAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTACTCCGCTGTAATC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
* * * * ** * *
95094978 TCAGGGAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGATTCC--
66 TCAGGGAGATAGGA---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTT
* * * * * * *
95095040 CAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTACTCCGCTG
126 TA-TTTTAATC-GCTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTG
* *** * ** * * *
95095105 TAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAGGA
189 TAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGA
* * * * ** * * * * * *
95095168 TTCCCAGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAGGATTCC--CAGCTTCAATCTAC
254 ---CCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTA-TTTTAATCCAC
* * * * *
95095230 TCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGA
313 TCCACTGTAATCTCAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGA
95095295 TA
378 TA
95095297 GGATTCCCAG
Statistics
Matches: 763, Mismatches: 85, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
479 32 0.04
480 36 0.05
481 487 0.64
482 104 0.14
483 100 0.13
484 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (480 bp):
AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATC
TCAGGGAGATAGGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTT
TAATCGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATTTAAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCT
CAAGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATCTAAAAT
TCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT
TCAGAGAGATAAGATCCTTTATTTT
Found at i:95094974 original size:44 final size:44
Alignment explanation
Indices: 95094571--95095698 Score: 1562
Period size: 44 Copynumber: 25.7 Consensus size: 44
95094561 TTTTAATGCG
* * * *
95094571 CTCCACTGTAATCTCAGGGAGATAGGATTACCAGTTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
* *** * **
95094615 CTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGA-TTCCCA-GCTTCAATCTA
* * * * * * *
95094661 TTCCACTGTAATCTTAGGGAGATAAGA---CCTGATGT-GATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCT-TCAATCTA
** ** * * * * *
95094702 CTCTACTGTAA-CTTCATAGAGATAAGA-TCCTTTA-TTTTAATCCA
1 CTCCGCTGTAATC-TCAGGGAGATAGGATTCC--CAGCTTCAATCTA
* * * *
95094746 CTCCACTGTAATCTCAGAGAGATAGGATTACCAGCTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
* * *** * **
95094790 CTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGAT-TCCCA-GCTTCAATCTA
* * * * * * *
95094836 TTCCACTGTAATCTCAGGGAGATAAGA---CCTGATGCGATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
** * * * * * **
95094877 CTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTA-TTTTAATCCG
1 CTCCGCTGTAATC-TCAGGGAGATAGGATTCC--CAGCTTCAATCTA
*
95094921 CTCCACTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95094965 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095009 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095053 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095097 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095141 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095185 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095229 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095273 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095317 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095361 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095405 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095449 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095493 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095537 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095581 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095625 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
95095669 CTCCGCTGTAATCTCAGGGAGATAGGATTC
1 CTCCGCTGTAATCTCAGGGAGATAGGATTC
95095699 ACCATCTTTG
Statistics
Matches: 984, Mismatches: 78, Indels: 44
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.00
41 55 0.06
42 1 0.00
43 5 0.01
44 847 0.86
45 13 0.01
46 61 0.06
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCGCTGTAATCTCAGGGAGATAGGATTCCCAGCTTCAATCTA
Found at i:95108005 original size:15 final size:17
Alignment explanation
Indices: 95107985--95108016 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
95107975 ACAAAATGAG
95107985 AATAA-TTAAT-ACAAA
1 AATAATTTAATCACAAA
95108000 AATAATTTAATCACAAA
1 AATAATTTAATCACAAA
95108017 TAAACCAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (17 bp):
AATAATTTAATCACAAA
Found at i:95108107 original size:25 final size:28
Alignment explanation
Indices: 95108070--95108123 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
95108060 AGAATAAAAA
*
95108070 TTTATAAGTCACAAAT-TATA-ATATAT
1 TTTATAAGACACAAATATATATATATAT
*
95108096 TTTATAA-ACACATATATATATATATAT
1 TTTATAAGACACAAATATATATATATAT
95108123 T
1 T
95108124 AAAAATAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 11 0.46
27 7 0.29
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (28 bp):
TTTATAAGACACAAATATATATATATAT
Done.