Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 29 of 310
Found at i:7805052 original size:4 final size:4
Alignment explanation
Indices: 7805043--7805073 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
7805033 AAAACAAATA
7805043 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
7805074 ATCAGCTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:7808570 original size:31 final size:31
Alignment explanation
Indices: 7808531--7808611 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
7808521 GTTGAAAAAT
* *
7808531 AAAAACTCAAGA-ACTAATTTAAATATTAAAG
1 AAAAACTCAA-ATACTAAATTAAAAATTAAAG
* *
7808562 CAAGACTCAAATACTAAATTAAAAATTAAAG
1 AAAAACTCAAATACTAAATTAAAAATTAAAG
* *
7808593 AAAAACTCAATTACCAAAT
1 AAAAACTCAAATACTAAAT
7808612 AGTATATTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.58, C:0.14, G:0.05, T:0.23
Consensus pattern (31 bp):
AAAAACTCAAATACTAAATTAAAAATTAAAG
Found at i:7809906 original size:6 final size:6
Alignment explanation
Indices: 7809895--7809947 Score: 106
Period size: 6 Copynumber: 8.8 Consensus size: 6
7809885 AAGCGTAAAC
7809895 GGATTT GGATTT GGATTT GGATTT GGATTT GGATTT GGATTT GGATTT
1 GGATTT GGATTT GGATTT GGATTT GGATTT GGATTT GGATTT GGATTT
7809943 GGATT
1 GGATT
7809948 GATTAATTTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (6 bp):
GGATTT
Found at i:7827892 original size:28 final size:28
Alignment explanation
Indices: 7827861--7827920 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
7827851 CCATATTAAT
7827861 GGGTATAGAAAAAGTCTCATAACTTATG
1 GGGTATAGAAAAAGTCTCATAACTTATG
7827889 GGGTATAGAAAAAGTCTCATAACTTATG
1 GGGTATAGAAAAAGTCTCATAACTTATG
7827917 GGGT
1 GGGT
7827921 TGATAATGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (28 bp):
GGGTATAGAAAAAGTCTCATAACTTATG
Found at i:7828526 original size:30 final size:31
Alignment explanation
Indices: 7828471--7828534 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
7828461 AATAATTTAA
** *
7828471 TTATTCAGTGATTTTATTTTAAGTAATATTT
1 TTATTCAAAGATTTTATTATAAGTAATATTT
7828502 TTATTCAAAGATTTTA-TATAAGTAATATTT
1 TTATTCAAAGATTTTATTATAAGTAATATTT
7828532 TTA
1 TTA
7828535 AAATAGTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (31 bp):
TTATTCAAAGATTTTATTATAAGTAATATTT
Found at i:7829707 original size:39 final size:40
Alignment explanation
Indices: 7829600--7829710 Score: 111
Period size: 38 Copynumber: 2.8 Consensus size: 40
7829590 GACCTCGAGT
* **
7829600 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
7829641 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
7829679 CGATGAGACACTGGGTGTCAACTATTACTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
7829711 AACTATCCGA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 19 0.34
39 19 0.34
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:7829721 original size:39 final size:39
Alignment explanation
Indices: 7829600--7829734 Score: 98
Period size: 39 Copynumber: 3.4 Consensus size: 39
7829590 GACCTCGAGT
* * *
7829600 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GA-ACTATC
** ** * *
7829641 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
7829679 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
* *
7829718 CGATGAGGCACCGGGTG
1 CGATGAGACACTGGGTG
7829735 CCATATTGGT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
37 1 0.01
38 20 0.28
39 30 0.42
40 4 0.06
41 15 0.21
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
Found at i:7837886 original size:55 final size:56
Alignment explanation
Indices: 7837769--7837887 Score: 213
Period size: 55 Copynumber: 2.1 Consensus size: 56
7837759 GAAAACATAT
* *
7837769 TCTACTTTTCTCTCTAAAAGTAATCTATTTTCTTTTTTTTTATATTAAAAAATCGA
1 TCTATTTTTCTCTCCAAAAGTAATCTATTTTCTTTTTTTTTATATTAAAAAATCGA
7837825 TCTATTTTTCTCTCCAAAAGTAATCTATTTTC-TTTTTTTTATATTAAAAAATCGA
1 TCTATTTTTCTCTCCAAAAGTAATCTATTTTCTTTTTTTTTATATTAAAAAATCGA
7837880 TCTATTTT
1 TCTATTTT
7837888 CGTGACCTAT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
55 31 0.51
56 30 0.49
ACGTcount: A:0.29, C:0.14, G:0.03, T:0.53
Consensus pattern (56 bp):
TCTATTTTTCTCTCCAAAAGTAATCTATTTTCTTTTTTTTTATATTAAAAAATCGA
Found at i:7838854 original size:5 final size:5
Alignment explanation
Indices: 7838846--7838870 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7838836 CAAACTTTTA
7838846 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
7838871 TACTTATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:7842537 original size:14 final size:14
Alignment explanation
Indices: 7842518--7842545 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7842508 AAATAACAAA
7842518 ATTATAAATTAATT
1 ATTATAAATTAATT
7842532 ATTATAAATTAATT
1 ATTATAAATTAATT
7842546 TATAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATAAATTAATT
Found at i:7843372 original size:30 final size:30
Alignment explanation
Indices: 7843338--7843396 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
7843328 TTTTTTTATT
7843338 GTTAATTTTGTTATTATTTTAAAGGCATTC
1 GTTAATTTTGTTATTATTTTAAAGGCATTC
*
7843368 GTTAATTTTGTTATTATTTTACAGGCATT
1 GTTAATTTTGTTATTATTTTAAAGGCATT
7843397 TGCTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (30 bp):
GTTAATTTTGTTATTATTTTAAAGGCATTC
Found at i:7844219 original size:15 final size:15
Alignment explanation
Indices: 7844199--7844237 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7844189 TTCAAAGTGT
* *
7844199 AATTTTACTTTTACA
1 AATTTTAATTTTAAA
7844214 AATTTTAAATTTTAAA
1 AATTTT-AATTTTAAA
7844230 AATTTTAA
1 AATTTTAA
7844238 AAGACCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTTTAATTTTAAA
Found at i:7844232 original size:16 final size:16
Alignment explanation
Indices: 7844207--7844238 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7844197 GTAATTTTAC
*
7844207 TTTTACAAATTTTAAA
1 TTTTAAAAATTTTAAA
7844223 TTTTAAAAATTTTAAA
1 TTTTAAAAATTTTAAA
7844239 AGACCTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTTAAAAATTTTAAA
Found at i:7851831 original size:35 final size:35
Alignment explanation
Indices: 7851791--7851863 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
7851781 TGTACACCTA
7851791 TAAGACACATTTGAACTCGCACTAGCCTCAACATC
1 TAAGACACATTTGAACTCGCACTAGCCTCAACATC
7851826 TAAGACACATTTGAACTCGCACTAGCCTCAACATC
1 TAAGACACATTTGAACTCGCACTAGCCTCAACATC
7851861 TAA
1 TAA
7851864 TAACTAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (35 bp):
TAAGACACATTTGAACTCGCACTAGCCTCAACATC
Found at i:7864743 original size:25 final size:25
Alignment explanation
Indices: 7864709--7864760 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
7864699 TTTGTTGACC
*
7864709 AATAAAACCGGCTAAGTAGAAAACT
1 AATAAAACCGGCCAAGTAGAAAACT
7864734 AATAAAACCGGCCAAGTAGAAAACT
1 AATAAAACCGGCCAAGTAGAAAACT
7864759 AA
1 AA
7864761 GTTATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.54, C:0.17, G:0.15, T:0.13
Consensus pattern (25 bp):
AATAAAACCGGCCAAGTAGAAAACT
Found at i:7867974 original size:23 final size:23
Alignment explanation
Indices: 7867930--7867974 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7867920 TTAAAATAAT
* *
7867930 AAAATTACATTTTTATTATTATA
1 AAAATTACAATTTAATTATTATA
*
7867953 AAAATTACAATTTAATTTTTAT
1 AAAATTACAATTTAATTATTAT
7867975 CTTCTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
AAAATTACAATTTAATTATTATA
Found at i:7872452 original size:4 final size:4
Alignment explanation
Indices: 7872435--7872468 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
7872425 TGTTGAAATT
*
7872435 ATGC ATGT ATGC ATGC ATGC ATGC ATGC ATGC AT
1 ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC AT
7872469 TCATACATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (4 bp):
ATGC
Found at i:7872709 original size:44 final size:44
Alignment explanation
Indices: 7872642--7872732 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
7872632 ATGAAGTTTT
7872642 TAATATATGTATATATATATGAAAACATTTTCACGTGAAAGCTG
1 TAATATATGTATATATATATGAAAACATTTTCACGTGAAAGCTG
*
7872686 TAATATATGTATATATATGTGAAAACATTTTCACGTGAAAGCTG
1 TAATATATGTATATATATATGAAAACATTTTCACGTGAAAGCTG
7872730 TAA
1 TAA
7872733 AAAGTGATGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (44 bp):
TAATATATGTATATATATATGAAAACATTTTCACGTGAAAGCTG
Found at i:7881254 original size:25 final size:25
Alignment explanation
Indices: 7881220--7881287 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
7881210 AAAGTTGACC
*
7881220 ATATAAAAAATTTAATAAA-ATAAAA
1 ATATATAAAA-TTAATAAATATAAAA
* *
7881245 ATATATAAAATTATTAAATATTAAA
1 ATATATAAAATTAATAAATATAAAA
* *
7881270 ATAATATAATATAAATAA
1 AT-ATATAAAATTAATAA
7881288 TTTTTTAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
24 7 0.20
25 16 0.46
26 12 0.34
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (25 bp):
ATATATAAAATTAATAAATATAAAA
Found at i:7881280 original size:16 final size:17
Alignment explanation
Indices: 7881234--7881282 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 17
7881224 AAAAAATTTA
7881234 ATAAAATAA-A-AATAT
1 ATAAAATAATATAATAT
*
7881249 ATAAAATTAT-TAA-AT
1 ATAAAATAATATAATAT
7881264 ATTAAAATAATATAATAT
1 A-TAAAATAATATAATAT
7881282 A
1 A
7881283 AATAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 3 0.11
18 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAAAATAATATAATAT
Found at i:7881466 original size:29 final size:30
Alignment explanation
Indices: 7881406--7881468 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
7881396 TAAAAAATAT
* *** *
7881406 AAAATTATTTTTTATCTTTATTTTAAGGAA
1 AAAATTATTTTCTATCTTTATACGAAGAAA
7881436 AAAATTATTTTCTATCTTTA-ACGAAGAAA
1 AAAATTATTTTCTATCTTTATACGAAGAAA
7881465 AAAA
1 AAAA
7881469 CTAAATTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.43
Consensus pattern (30 bp):
AAAATTATTTTCTATCTTTATACGAAGAAA
Found at i:7884359 original size:61 final size:60
Alignment explanation
Indices: 7884294--7884421 Score: 141
Period size: 61 Copynumber: 2.1 Consensus size: 60
7884284 ATTTTTTTTA
* * ** * * *
7884294 AAATTTTCAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAAGG-TTAAATTTATTG
1 AAATTTTCAAAATTAGAACAAAAACGACAAATTTTGTAAATAATG-AGGACTAAA-TTATTG
* *
7884355 AAATTTTTAAAATTTGAACAAAAACGACAAATTTTGTAAATAATGAGGACTAAATTATTG
1 AAATTTTCAAAATTAGAACAAAAACGACAAATTTTGTAAATAATGAGGACTAAATTATTG
*
7884415 AATTTTT
1 AAATTTT
7884422 TTATGTTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
60 15 0.27
61 41 0.73
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.39
Consensus pattern (60 bp):
AAATTTTCAAAATTAGAACAAAAACGACAAATTTTGTAAATAATGAGGACTAAATTATTG
Found at i:7888311 original size:32 final size:32
Alignment explanation
Indices: 7888275--7888344 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
7888265 TTAGTATTTT
7888275 AGTTAAAAAATC-AATTTGACTCTGTTTCAAAA
1 AGTTAAAAAATCAAATTTGACTCT-TTTCAAAA
** *
7888307 AGTT-AATGATCAAATTTGACTCTTTTTAAAA
1 AGTTAAAAAATCAAATTTGACTCTTTTCAAAA
*
7888338 GGTTAAA
1 AGTTAAA
7888345 GACCAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (32 bp):
AGTTAAAAAATCAAATTTGACTCTTTTCAAAA
Found at i:7888343 original size:31 final size:32
Alignment explanation
Indices: 7888287--7888359 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 32
7888277 TTAAAAAATC
* *
7888287 AATTTGACTCTGTTTCAAAAAGTTAATGATCA
1 AATTTGACTCTGTTTCAAAAAGTTAAAGACCA
* *
7888319 AATTTGACTCT-TTTTAAAAGGTTAAAGACCA
1 AATTTGACTCTGTTTCAAAAAGTTAAAGACCA
*
7888350 AATTTAACTC
1 AATTTGACTC
7888360 AATTGTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 25 0.69
32 11 0.31
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (32 bp):
AATTTGACTCTGTTTCAAAAAGTTAAAGACCA
Found at i:7895125 original size:50 final size:51
Alignment explanation
Indices: 7895048--7895176 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
7895038 GACCATGGCA
* *
7895048 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
7895099 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
7895149 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
7895177 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:7895190 original size:31 final size:31
Alignment explanation
Indices: 7895152--7895269 Score: 209
Period size: 31 Copynumber: 3.8 Consensus size: 31
7895142 ACAAATGACA
7895152 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7895183 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7895214 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7895245 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
7895270 AAGTGACAAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 82 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7895357 original size:47 final size:46
Alignment explanation
Indices: 7895287--7895451 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 46
7895277 AAGTGATTTC
* *
7895287 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
7895333 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
7895380 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
7895422 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
7895452 ATTATGTGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
46 27 0.25
47 41 0.39
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:7895439 original size:42 final size:43
Alignment explanation
Indices: 7895381--7895495 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
7895371 TATGTGATTC
*
7895381 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
7895423 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
7895465 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
7895496 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:7897156 original size:5 final size:5
Alignment explanation
Indices: 7897140--7897170 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
7897130 TTGGGAAACA
*
7897140 AAAAT AACAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
7897171 TTTTATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7898596 original size:23 final size:24
Alignment explanation
Indices: 7898560--7898609 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
7898550 TATTTATCCC
7898560 ATTTTGAATGAAAA-AT-ACATATA
1 ATTTTGAATGAAAAGATCA-ATATA
* *
7898583 ATTTTGTATTAAAAGATCAATATA
1 ATTTTGAATGAAAAGATCAATATA
7898607 ATT
1 ATT
7898610 ATTTTAACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 12 0.52
24 10 0.43
25 1 0.04
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (24 bp):
ATTTTGAATGAAAAGATCAATATA
Found at i:7903156 original size:15 final size:15
Alignment explanation
Indices: 7903135--7903180 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
7903125 TGAATATCTA
7903135 ATTGATTGAAATTAT
1 ATTGATTGAAATTAT
* *
7903150 TTTGATTGAATTTAT
1 ATTGATTGAAATTAT
7903165 ATTGATTG-AATTAT
1 ATTGATTGAAATTAT
7903179 AT
1 AT
7903181 AATATATATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 7 0.26
15 20 0.74
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (15 bp):
ATTGATTGAAATTAT
Found at i:7903599 original size:21 final size:21
Alignment explanation
Indices: 7903564--7903659 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
7903554 AGGCACTTTA
7903564 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
7903587 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
7903608 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
7903629 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
7903650 TGTGTCGTAT
1 TGTGTCGTAT
7903660 ACTGATCAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 58 0.87
23 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:7903634 original size:42 final size:42
Alignment explanation
Indices: 7903551--7903659 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
7903541 GGCTTTATCG
* *
7903551 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
7903595 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
7903637 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
7903660 ACTGATCAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 38 0.67
44 19 0.33
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:7911999 original size:21 final size:22
Alignment explanation
Indices: 7911970--7912012 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
7911960 AGTTGTAAAT
*
7911970 TGAATACTAATTGGCAGACCTA
1 TGAATACTAATTCGCAGACCTA
*
7911992 TGAA-ACTAATTCGTAGACCTA
1 TGAATACTAATTCGCAGACCTA
7912013 GGAACCTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (22 bp):
TGAATACTAATTCGCAGACCTA
Found at i:7912295 original size:6 final size:6
Alignment explanation
Indices: 7912284--7912309 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7912274 TATGACGAAT
7912284 AATTAA AATTAA AATTAA AATTAA AA
1 AATTAA AATTAA AATTAA AATTAA AA
7912310 AATGAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AATTAA
Found at i:7921611 original size:26 final size:28
Alignment explanation
Indices: 7921566--7921628 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 28
7921556 TAAAAATGAT
*
7921566 AAATTATA-TTTTTATAATTTTT-AA-A
1 AAATTAAATTTTTTATAATTTTTAAAGA
*
7921591 AAATTAAATTTTTTATTATTTTTAAAGA
1 AAATTAAATTTTTTATAATTTTTAAAGA
7921619 AAATTAAATT
1 AAATTAAATT
7921629 GTAATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 7 0.21
26 13 0.39
27 2 0.06
28 11 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AAATTAAATTTTTTATAATTTTTAAAGA
Found at i:7921638 original size:26 final size:26
Alignment explanation
Indices: 7921582--7921638 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
7921572 TATTTTTATA
* *
7921582 ATTTTTAAAAAATTAAATTTTTTATT
1 ATTTTTAAAAAATTAAATTTGTAATT
7921608 ATTTTTAAAGAAAATTAAA-TTGTAATT
1 ATTTTT-AA-AAAATTAAATTTGTAATT
7921635 -TTTT
1 ATTTT
7921639 ATTACTAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.37
27 8 0.30
28 9 0.33
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (26 bp):
ATTTTTAAAAAATTAAATTTGTAATT
Found at i:7922033 original size:20 final size:20
Alignment explanation
Indices: 7922008--7922066 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
7921998 TTCAATTTTT
7922008 AATAATA-TTATTAAATATTA
1 AATAATATTTA-TAAATATTA
7922028 AATAATATTTATAAATATATA
1 AATAATATTTATAAATAT-TA
* *
7922049 GATTATAATTTATAAATA
1 AATAAT-ATTTATAAATA
7922067 CTTAGTGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 9 0.26
22 11 0.32
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AATAATATTTATAAATATTA
Found at i:7922059 original size:22 final size:21
Alignment explanation
Indices: 7922007--7922066 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
7921997 TTTCAATTTT
7922007 TAATAATATTATTAAATATTAAA
1 TAATAAT-TTA-TAAATATTAAA
*
7922030 TAAT-ATTTATAAATATATAGA
1 TAATAATTTATAAATAT-TAAA
*
7922051 TTATAATTTATAAATA
1 TAATAATTTATAAATA
7922067 CTTAGTGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 7 0.21
21 9 0.27
22 13 0.39
23 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TAATAATTTATAAATATTAAA
Found at i:7922079 original size:21 final size:22
Alignment explanation
Indices: 7922009--7922080 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 22
7921999 TCAATTTTTA
* *
7922009 ATAATATTATTAAATAT-TAAATA
1 ATAAT-TTA-TAAATATATAGATG
*
7922032 AT-ATTTATAAATATATAGATT
1 ATAATTTATAAATATATAGATG
7922053 ATAATTTATAAATACT-TAG-TG
1 ATAATTTATAAATA-TATAGATG
7922074 ATAATTT
1 ATAATTT
7922081 TTTTATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
20 7 0.16
21 17 0.40
22 16 0.37
23 3 0.07
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (22 bp):
ATAATTTATAAATATATAGATG
Found at i:7922546 original size:90 final size:89
Alignment explanation
Indices: 7922426--7922595 Score: 241
Period size: 90 Copynumber: 1.9 Consensus size: 89
7922416 ACTCTTTTTC
* * * *
7922426 TTTTTCTACTCAATTGAGCACTTGAACTTTCAAAATGCATAAGAAAAGGCTCTCAAACTTCTTAA
1 TTTTTCTACTCAATTGAGCACTAGAACTTTCAAAATGCATAA-AAAAGACCCTCAAAATTCTTAA
7922491 AAAAAACAATTAAGCCCCTGCTTAT
65 AAAAAACAATTAAGCCCCTGCTTAT
* * * * *
7922516 TTTTTCTACTCAATTGAGTACTAGAGCTTTCAAAATGCATCAAAAAGACCCTCAAAATTTTTTAA
1 TTTTTCTACTCAATTGAGCACTAGAACTTTCAAAATGCATAAAAAAGACCCTCAAAATTCTTAAA
*
7922581 AAAAATAATTAAGCC
66 AAAAACAATTAAGCC
7922596 TTACTCTTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
89 32 0.46
90 38 0.54
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (89 bp):
TTTTTCTACTCAATTGAGCACTAGAACTTTCAAAATGCATAAAAAAGACCCTCAAAATTCTTAAA
AAAAACAATTAAGCCCCTGCTTAT
Found at i:7922630 original size:9 final size:9
Alignment explanation
Indices: 7922618--7922736 Score: 62
Period size: 9 Copynumber: 12.6 Consensus size: 9
7922608 AAAATTAGAA
7922618 AAAAATTAT
1 AAAAATTAT
*
7922627 AAAAATAAT
1 AAAAATTAT
* *
7922636 AAAATTTAG
1 AAAAATTAT
*
7922645 AAAATTTATT
1 AAAAATTA-T
*
7922655 AAAATTTATT
1 AAAAATTA-T
7922665 AAAAATTAT
1 AAAAATTAT
**
7922674 AAATTTTTTAAT
1 AAA--AATT-AT
7922686 AAAAA-TAGT
1 AAAAATTA-T
*
7922695 AAAAAGTA-
1 AAAAATTAT
*
7922703 AAAATTTTAT
1 AAAA-ATTAT
7922713 AAAAATTTAT
1 AAAAA-TTAT
*
7922723 AAAAATCAT
1 AAAAATTAT
7922732 AAAAA
1 AAAAA
7922737 AATTAATGAC
Statistics
Matches: 87, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
8 5 0.06
9 43 0.49
10 32 0.37
11 2 0.02
12 5 0.06
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7922671 original size:11 final size:10
Alignment explanation
Indices: 7922635--7922673 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
7922625 ATAAAAATAA
7922635 TAAAATTTA-
1 TAAAATTTAT
*
7922644 GAAAATTTAT
1 TAAAATTTAT
7922654 TAAAATTTAT
1 TAAAATTTAT
*
7922664 TAAAAATTAT
1 TAAAATTTAT
7922674 AAATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (10 bp):
TAAAATTTAT
Found at i:7922677 original size:28 final size:27
Alignment explanation
Indices: 7922646--7922734 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 27
7922636 AAAATTTAGA
7922646 AAATTTATTAAAATTTATTAAAAATTAT
1 AAATTTATTAAAATTTA-TAAAAATTAT
* ** * *
7922674 AAATTTTTTAATAAAAATAGTAAAAAGTAA
1 AAATTTATT-A-AAATTTA-TAAAAATTAT
* *
7922704 AAATTTTATAAAAATTTATAAAAATCAT
1 AAA-TTTATTAAAATTTATAAAAATTAT
7922732 AAA
1 AAA
7922735 AAAATTAATG
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
28 18 0.40
29 6 0.13
30 17 0.38
31 4 0.09
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.38
Consensus pattern (27 bp):
AAATTTATTAAAATTTATAAAAATTAT
Found at i:7922735 original size:30 final size:30
Alignment explanation
Indices: 7922636--7922736 Score: 77
Period size: 30 Copynumber: 3.4 Consensus size: 30
7922626 TAAAAATAAT
* * *
7922636 AAAATTTAGAAAA-TTTATTAAAATTTATTA
1 AAAATATA-AAAATTTTATAAAAATTTAGTA
**
7922666 AAAATTATAAATTTTTTAATAAAAA--TAGTA
1 AAAA-TATAAAAATTTT-ATAAAAATTTAGTA
*
7922696 AAAA-GTAAAAATTTTATAAAAATTTA-TA
1 AAAATATAAAAATTTTATAAAAATTTAGTA
7922724 AAAATCATAAAAA
1 AAAAT-ATAAAAA
7922737 AATTAATGAC
Statistics
Matches: 55, Mismatches: 9, Indels: 14
0.71 0.12 0.18
Matches are distributed among these distances:
27 7 0.13
28 14 0.25
29 2 0.04
30 20 0.36
31 6 0.11
32 6 0.11
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (30 bp):
AAAATATAAAAATTTTATAAAAATTTAGTA
Found at i:7922743 original size:58 final size:59
Alignment explanation
Indices: 7922602--7922743 Score: 164
Period size: 58 Copynumber: 2.4 Consensus size: 59
7922592 AGCCTTACTC
* ** *
7922602 TTATTAAAAATTAGAAAAAAATT-ATAAAAATAATAAAATTTAGAAAATTTATTAAAAT
1 TTATTAAAAATTATAAAAAAATTAATAAAAATAATAAAAAGTAGAAAATTTATAAAAAT
**** *
7922660 TTATTAAAAATTATAAATTTTTTAATAAAAATAGTAAAAAGTA-AAAATTTTATAAAAAT
1 TTATTAAAAATTATAAAAAAATTAATAAAAATAATAAAAAGTAGAAAA-TTTATAAAAAT
*
7922719 TTA-TAAAAATCATAAAAAAATTAAT
1 TTATTAAAAATTATAAAAAAATTAAT
7922744 GACCCATAGT
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
58 39 0.57
59 29 0.43
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (59 bp):
TTATTAAAAATTATAAAAAAATTAATAAAAATAATAAAAAGTAGAAAATTTATAAAAAT
Found at i:7922972 original size:29 final size:29
Alignment explanation
Indices: 7922921--7922988 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7922911 TTACATTTTG
* *
7922921 TATAATTTTCTTATAACTTTATAAAATTT
1 TATAATTTTTTTATAACTCTATAAAATTT
* *
7922950 TATAATTTTTTTATATA-TCTATATATTTT
1 TATAATTTTTTTATA-ACTCTATAAAATTT
*
7922979 TATGATTTTT
1 TATAATTTTT
7922989 ATAAAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 32 0.97
30 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (29 bp):
TATAATTTTTTTATAACTCTATAAAATTT
Found at i:7922991 original size:19 final size:19
Alignment explanation
Indices: 7922969--7923028 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
7922959 TTTATATATC
*
7922969 TATATATTTTTATGATTTT
1 TATATATTTTTACGATTTT
* * *
7922988 TATAAAATTTTACAATTTT
1 TATATATTTTTACGATTTT
7923007 TATAT-TCTTTTACGATTTT
1 TATATAT-TTTTACGATTTT
7923026 TAT
1 TAT
7923029 TTTTTTTTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (19 bp):
TATATATTTTTACGATTTT
Found at i:7923036 original size:19 final size:19
Alignment explanation
Indices: 7922995--7923046 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
7922985 TTTTATAAAA
7922995 TTTTACAATTTTTATATTC
1 TTTTACAATTTTTATATTC
* *
7923014 TTTTACGATTTTTAT-TTT
1 TTTTACAATTTTTATATTC
*
7923032 TTTTTCTAATTTTTA
1 TTTTAC-AATTTTTA
7923047 ATAAAAACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTACAATTTTTATATTC
Found at i:7927928 original size:37 final size:37
Alignment explanation
Indices: 7927886--7928079 Score: 253
Period size: 37 Copynumber: 5.0 Consensus size: 37
7927876 TAGTTTTAGC
7927886 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
**
7927923 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
* *
7927960 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
*
7927997 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGT-G--G---T
*
7928040 AGCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGT
1 ---TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
7928080 AGCCTAGCTA
Statistics
Matches: 139, Mismatches: 9, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
37 102 0.73
38 1 0.01
40 2 0.01
43 1 0.01
45 1 0.01
46 32 0.23
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
Found at i:7927975 original size:74 final size:78
Alignment explanation
Indices: 7927848--7928079 Score: 274
Period size: 74 Copynumber: 2.9 Consensus size: 78
7927838 TTTGAGTACT
**
7927848 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGTGACAAAGT
7927913 GATAAGTGGTTACACTTA
61 GATAAGTGGTTACACTTA
*
7927931 TCTGATCAAGAAACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGAGACAAAGTGATAA
1 TCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGTGACAAAGTGATAA
*
7927992 GTGGCTACACTTA
66 GTGGTTACACTTA
** * *
7928005 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGGCAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGTGACAAAGT
7928070 GATAAGTGGT
61 GATAAGTGGT
7928080 AGCCTAGCTA
Statistics
Matches: 130, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
74 66 0.51
75 1 0.01
77 2 0.02
80 2 0.02
82 1 0.01
83 58 0.45
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (78 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGTGACAAAGTGATAA
GTGGTTACACTTA
Found at i:7928104 original size:45 final size:46
Alignment explanation
Indices: 7927995--7928118 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
7927985 GTGATAAGTG
* *
7927995 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
7928041 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGC-CTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
7928086 GCTACACTTATCTAATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
7928119 AGGTCATATG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.29
46 40 0.55
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
Found at i:7934643 original size:47 final size:47
Alignment explanation
Indices: 7934591--7934684 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
7934581 TAAATTGTGA
*
7934591 TTAAATAGCTTAAGTGACTAATGAGGGGGGATTTAAAAGGCAATTAG
1 TTAAATAGCTTAAGTGACTAATGAGGAGGGATTTAAAAGGCAATTAG
7934638 TTAAATAGCTTAAGTGACTAATGAGGAGGGATTTAAAAGGCAATTAG
1 TTAAATAGCTTAAGTGACTAATGAGGAGGGATTTAAAAGGCAATTAG
7934685 GCCCAAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (47 bp):
TTAAATAGCTTAAGTGACTAATGAGGAGGGATTTAAAAGGCAATTAG
Found at i:7935684 original size:37 final size:37
Alignment explanation
Indices: 7935642--7935835 Score: 253
Period size: 37 Copynumber: 5.0 Consensus size: 37
7935632 TAGTTTTAGC
7935642 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
**
7935679 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
* *
7935716 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
*
7935753 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGT-G--G---T
*
7935796 AGCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGT
1 ---TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
7935836 AGCCTAGCTA
Statistics
Matches: 139, Mismatches: 9, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
37 102 0.73
38 1 0.01
40 2 0.01
43 1 0.01
45 1 0.01
46 32 0.23
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
Found at i:7935731 original size:74 final size:78
Alignment explanation
Indices: 7935604--7935835 Score: 274
Period size: 74 Copynumber: 2.9 Consensus size: 78
7935594 TTTGAGTACT
**
7935604 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGTGACAAAGT
7935669 GATAAGTGGTTACACTTA
61 GATAAGTGGTTACACTTA
*
7935687 TCTGATCAAGAAACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGAGACAAAGTGATAA
1 TCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGTGACAAAGTGATAA
*
7935748 GTGGCTACACTTA
66 GTGGTTACACTTA
** * *
7935761 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGGCAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGTGACAAAGT
7935826 GATAAGTGGT
61 GATAAGTGGT
7935836 AGCCTAGCTA
Statistics
Matches: 130, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
74 66 0.51
75 1 0.01
77 2 0.02
80 2 0.02
82 1 0.01
83 58 0.45
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (78 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGTGACAAAGTGATAA
GTGGTTACACTTA
Found at i:7935860 original size:45 final size:46
Alignment explanation
Indices: 7935751--7935874 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
7935741 GTGATAAGTG
* *
7935751 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
7935797 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGC-CTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
7935842 GCTACACTTATCTAATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
7935875 AGGTCATATG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.29
46 40 0.55
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
Found at i:7948760 original size:22 final size:22
Alignment explanation
Indices: 7948716--7948761 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7948706 TTCTTAGTTC
*
7948716 ATTTCATAAAACAATTTCCTCA
1 ATTTCATAAAACAATTTCATCA
* *
7948738 ATTTCATAATACAATTTTATCA
1 ATTTCATAAAACAATTTCATCA
7948760 AT
1 AT
7948762 CCAAATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTTCATAAAACAATTTCATCA
Found at i:7952950 original size:26 final size:25
Alignment explanation
Indices: 7952904--7952955 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
7952894 TCAAACATGC
7952904 ATTTAGGTCAATTTAACCTTATGGGT
1 ATTTAGGTCAATTTAACCTTA-GGGT
* *
7952930 ATTTCGGT-AATTTATCTCTTAGGGT
1 ATTTAGGTCAATTTAAC-CTTAGGGT
7952955 A
1 A
7952956 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (25 bp):
ATTTAGGTCAATTTAACCTTAGGGT
Found at i:7954480 original size:26 final size:26
Alignment explanation
Indices: 7954444--7954548 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
7954434 AATTCCCACA
*
7954444 ATGGAACATTTACCTAAACCATTATC
1 ATGGAACATTTACCTAACCCATTATC
7954470 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* * *
7954496 ATTGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
7954522 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
7954548 A
1 A
7954549 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:7956689 original size:95 final size:95
Alignment explanation
Indices: 7956554--7956819 Score: 266
Period size: 95 Copynumber: 2.8 Consensus size: 95
7956544 ATATCAATAA
* * * * * *
7956554 GCTCATTGACTTAAGATCACAACCTAAGCTCATTCGATTTAACATCATGAGCAATCTTATCTAAG
1 GCTCACTGACTTAAGATCGCAGCATAAGTTCATTCGATTTAACATCATGAACAATCTTATCTAAG
* *
7956619 TTAGGTGATTTAATATCGCTGCTCCAAACT-
66 TTAGCTGATTTAACATCGCTGCTCCAAA-TG
* * * * * * * *
7956649 GTTCACTGATTTAAGATCGCGGCCTATGTTCATTCAATTTAACATCATGAACAAACTTATTTAAG
1 GCTCACTGACTTAAGATCGCAGCATAAGTTCATTCGATTTAACATCATGAACAATCTTATCTAAG
* * * **
7956714 TTAACTGATTCAACATTGCTGCTTGAAATG
66 TTAGCTGATTTAACATCGCTGCTCCAAATG
* * * *
7956744 GCTCACTGACTTAAGATTGCAGCATAAGTTCATTTGATTT-ACTATCATGAAAAATCTTATCTAT
1 GCTCACTGACTTAAGATCGCAGCATAAGTTCATTCGATTTAAC-ATCATGAACAATCTTATCTAA
*
7956808 GTTAGTTGATTT
65 GTTAGCTGATTT
7956820 CCTAATCACT
Statistics
Matches: 135, Mismatches: 34, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
94 3 0.02
95 132 0.98
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (95 bp):
GCTCACTGACTTAAGATCGCAGCATAAGTTCATTCGATTTAACATCATGAACAATCTTATCTAAG
TTAGCTGATTTAACATCGCTGCTCCAAATG
Found at i:7961032 original size:21 final size:23
Alignment explanation
Indices: 7961006--7961051 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
7960996 TATTGAATCG
7961006 AGTCGAG-TG-AAATAAAATTAA
1 AGTCGAGTTGAAAATAAAATTAA
7961027 AGTCGAGTTGAAAAATAAAATTAA
1 AGTCGAGTTG-AAAATAAAATTAA
7961051 A
1 A
7961052 CCCCTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.32
22 2 0.09
24 13 0.59
ACGTcount: A:0.54, C:0.04, G:0.17, T:0.24
Consensus pattern (23 bp):
AGTCGAGTTGAAAATAAAATTAA
Found at i:7961441 original size:12 final size:12
Alignment explanation
Indices: 7961414--7961448 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
7961404 TTGTTGTAAA
7961414 AATATTTGGATGC
1 AATATTTGG-TGC
*
7961427 AATATATGGTGC
1 AATATTTGGTGC
7961439 AATATTTGGT
1 AATATTTGGT
7961449 TAAACAATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (12 bp):
AATATTTGGTGC
Found at i:7973995 original size:202 final size:201
Alignment explanation
Indices: 7973650--7974052 Score: 752
Period size: 202 Copynumber: 2.0 Consensus size: 201
7973640 TCACGATTAT
*
7973650 GGCAAGTGTACCTATCGAACAGTAGTATAGTTCAGCAAGACCGGATTGTCGAACCTAAGGGAACC
1 GGCAAGTGTACCTATCGAACAGTAGTATAGTTCAGCAAGACCGGATTGTCGAACCCAAGGGAACC
*
7973715 ACGAATACTAGTATTTACTTCCTTTTTATTATCTAGCTTAAAAAAAATTAAGTGGTTTGGTTATT
66 ACGAATACTAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAAAAATTAAGTGGTTTGGTTATT
*
7973780 TAAACTAATTACTAAACTAAGAATGGACAGAAAGAAAATTTGAGAAAATACTTTTGGGAGAATTC
131 TAAACTAATTACTAAACTAAGAATGCACAGAAAGAAAATTTGAGAAAATACTTTTGGGAGAATTC
7973845 GATTGA
196 GATTGA
7973851 GGCAAGTGTACCTATCGAAACAGTAGTATAGTTCAGCAAGACCGGATTGTCGAACCCAAGGGAAC
1 GGCAAGTGTACCTATCG-AACAGTAGTATAGTTCAGCAAGACCGGATTGTCGAACCCAAGGGAAC
* *
7973916 CAGGAGTACTAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAAAAATTAAGTGGTTTGGTTAT
65 CACGAATACTAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAAAAATTAAGTGGTTTGGTTAT
7973981 TTAAACTAATTACTAAACTAAGAATGCACAGAAAGAAAATTTGAGAAAATACTTTTGGGAGAATT
130 TTAAACTAATTACTAAACTAAGAATGCACAGAAAGAAAATTTGAGAAAATACTTTTGGGAGAATT
7974046 CGATTGA
195 CGATTGA
7974053 TTAAGACAAT
Statistics
Matches: 196, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
201 17 0.09
202 179 0.91
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (201 bp):
GGCAAGTGTACCTATCGAACAGTAGTATAGTTCAGCAAGACCGGATTGTCGAACCCAAGGGAACC
ACGAATACTAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAAAAATTAAGTGGTTTGGTTATT
TAAACTAATTACTAAACTAAGAATGCACAGAAAGAAAATTTGAGAAAATACTTTTGGGAGAATTC
GATTGA
Found at i:7976406 original size:94 final size:93
Alignment explanation
Indices: 7976284--7976470 Score: 347
Period size: 94 Copynumber: 2.0 Consensus size: 93
7976274 AAATTGCAAA
*
7976284 GTAGTCAAAGGTATAGGGGCAAATGTATAATTTGGAAAGTATGTGCGAATTGAATTAAATGGTTA
1 GTAGTCAAAAGTATAGGGGCAAATGTATAATTTGGAAAGTATGTGCGAATTGAATTAAATGGTTA
7976349 CTAAAAATTTTGAATTTTTTAATATATAG
66 CTAAAAATTTTGAA-TTTTTAATATATAG
*
7976378 GTAGTCAAAAGTATAGGGGCAAATGTATAATTTTGAAAGTATGTGCGAATTGAATTAAATGGTTA
1 GTAGTCAAAAGTATAGGGGCAAATGTATAATTTGGAAAGTATGTGCGAATTGAATTAAATGGTTA
7976443 CTAAAAATTTTGAATTTTTAATATATAG
66 CTAAAAATTTTGAATTTTTAATATATAG
7976471 ACCAAGATAA
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
93 14 0.15
94 77 0.85
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.36
Consensus pattern (93 bp):
GTAGTCAAAAGTATAGGGGCAAATGTATAATTTGGAAAGTATGTGCGAATTGAATTAAATGGTTA
CTAAAAATTTTGAATTTTTAATATATAG
Found at i:7977054 original size:25 final size:26
Alignment explanation
Indices: 7977026--7977079 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
7977016 TAAGAGCTAT
7977026 ATGATTTACATGAATTATAAGA-TAC
1 ATGATTTACATGAATTATAAGATTAC
*
7977051 ATGATTTACATGAATTATATGATTAC
1 ATGATTTACATGAATTATAAGATTAC
7977077 ATG
1 ATG
7977080 GATATTATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (26 bp):
ATGATTTACATGAATTATAAGATTAC
Found at i:7977078 original size:17 final size:17
Alignment explanation
Indices: 7977051--7977096 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
7977041 TATAAGATAC
7977051 ATGATTTACATGAAT-TAT
1 ATGA-TTACATGAATAT-T
*
7977069 ATGATTACATGGATATT
1 ATGATTACATGAATATT
7977086 ATGA-TACATGA
1 ATGATTACATGA
7977097 GATACTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.24
17 14 0.56
18 5 0.20
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (17 bp):
ATGATTACATGAATATT
Found at i:7977100 original size:17 final size:18
Alignment explanation
Indices: 7977068--7977105 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
7977058 ACATGAATTA
7977068 TATGATTACATGGATA-T
1 TATGATTACATGGATACT
7977085 TATGA-TACATGAGATACT
1 TATGATTACATG-GATACT
7977103 TAT
1 TAT
7977106 ATAATTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 9 0.47
18 4 0.21
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (18 bp):
TATGATTACATGGATACT
Found at i:7984191 original size:23 final size:26
Alignment explanation
Indices: 7984158--7984204 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
7984148 TAATAATATT
7984158 TAAATTTATT-AAAAA-TTTAAAATA
1 TAAATTTATTAAAAAATTTTAAAATA
7984182 TAAA-TTATTAAAAAATTTTAAAA
1 TAAATTTATTAAAAAATTTTAAAA
7984205 GTGAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 9 0.43
25 7 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
TAAATTTATTAAAAAATTTTAAAATA
Found at i:7991428 original size:3 final size:3
Alignment explanation
Indices: 7991422--7991471 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
7991412 TTCAAGACGT
* *
7991422 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7991470 TA
1 TA
7991472 GATACACCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:7991641 original size:16 final size:16
Alignment explanation
Indices: 7991622--7991656 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7991612 TGAAAATAAT
*
7991622 TATTATTTGGAACAAC
1 TATTATTTAGAACAAC
*
7991638 TATTATTTAGAATAAC
1 TATTATTTAGAACAAC
7991654 TAT
1 TAT
7991657 ATTCAAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (16 bp):
TATTATTTAGAACAAC
Found at i:7995889 original size:33 final size:33
Alignment explanation
Indices: 7995852--7995955 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
7995842 CTCAACTGAT
* *
7995852 TATCTTTGTT-TTTCATTTACTATCCCAGTAGAC
1 TATCTTTGTTATGT-ATTTACTATCCCAGCAGAC
*
7995885 TATCTTTGTTATGTATTTACTGTCCCAGCAGAC
1 TATCTTTGTTATGTATTTACTATCCCAGCAGAC
* * * * * * *
7995918 TATCTCTGTTCTATGTTTACTGTCCCAACGGAC
1 TATCTTTGTTATGTATTTACTATCCCAGCAGAC
7995951 TATCT
1 TATCT
7995956 CTATTCTATG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 59 0.97
34 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.44
Consensus pattern (33 bp):
TATCTTTGTTATGTATTTACTATCCCAGCAGAC
Found at i:7995956 original size:33 final size:33
Alignment explanation
Indices: 7995867--7995992 Score: 153
Period size: 33 Copynumber: 3.8 Consensus size: 33
7995857 TTGTTTTTCA
* * * * * *
7995867 TTTACTATCCCAGTAGACTATCTTTGTTATGTA
1 TTTACTGTCCCAGCAGACTATCTCTGTTCTATG
7995900 TTTACTGTCCCAGCAGACTATCTCTGTTCTATG
1 TTTACTGTCCCAGCAGACTATCTCTGTTCTATG
* * *
7995933 TTTACTGTCCCAACGGACTATCTCTATTCTATG
1 TTTACTGTCCCAGCAGACTATCTCTGTTCTATG
* *
7995966 TTTACTGTCGCAGCAGACTATTTCTGT
1 TTTACTGTCCCAGCAGACTATCTCTGT
7995993 GGATGCCATG
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 79 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (33 bp):
TTTACTGTCCCAGCAGACTATCTCTGTTCTATG
Found at i:8012588 original size:25 final size:25
Alignment explanation
Indices: 8012560--8012608 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8012550 TACAGTCTAT
* *
8012560 CTATAATAGTCTCAGTATATACTAC
1 CTATAACAGTCTCAGGATATACTAC
* *
8012585 CTATAGCAGTTTCAGGATATACTA
1 CTATAACAGTCTCAGGATATACTA
8012609 TCAAAAACAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (25 bp):
CTATAACAGTCTCAGGATATACTAC
Found at i:8013454 original size:16 final size:17
Alignment explanation
Indices: 8013423--8013455 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8013413 TTCATAAGTA
8013423 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
8013440 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
8013456 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:8013802 original size:46 final size:46
Alignment explanation
Indices: 8013752--8014010 Score: 376
Period size: 46 Copynumber: 5.6 Consensus size: 46
8013742 CCATAGTGTT
* * *
8013752 TTTCAACTATGGTCTTACTCATTTTC-TATCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTATTCA-TTTCATATCACGTTGCCATGGTATC
* *
8013798 TTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATC
1 TTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC
* * * *
8013844 TTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGATATC
1 TTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC
*
8013890 TTTCAACCATGGTCTTATTCATTTCTTATCACGTTGCCATGGTATC
1 TTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC
* *
8013936 TTTCAACCATGGTCTTATACATTTCATATCAGGTTGCCATGGTATC
1 TTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC
**
8013982 TTTCAACCATGGTCTTACACATTTCATAT
1 TTTCAACCATGGTCTTATTCATTTCATAT
8014011 AAGAGAGCAC
Statistics
Matches: 195, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 191 0.98
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (46 bp):
TTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC
Found at i:8018327 original size:49 final size:49
Alignment explanation
Indices: 8018254--8018541 Score: 303
Period size: 49 Copynumber: 5.8 Consensus size: 49
8018244 TAGCCGAAGC
*
8018254 TATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
* * * *
8018303 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTG-ATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTAC--TACACATGCAAC-CAAT
* * * * * *
8018354 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
* * * * *
8018403 TATCCGGTACACGTAATAGCCTGCACTTAGTACTACGCACGTG-ATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTA--CACATGCAAC-CAAT
* * * *
8018454 T-TTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
*
8018503 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
8018542 CGTGACCTCA
Statistics
Matches: 191, Mismatches: 38, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
49 111 0.58
50 7 0.04
51 73 0.38
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
Found at i:8018432 original size:100 final size:100
Alignment explanation
Indices: 8018259--8018546 Score: 495
Period size: 100 Copynumber: 2.9 Consensus size: 100
8018249 GAAGCTATCT
* * * *
8018259 GGTACGCGTAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
8018324 TGCACTTAGTACTATACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* *
8018359 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAATAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
* *
8018424 TGCACTTAGTACTACGCACGTGATCACAGTTTTTG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
8018459 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
8018524 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
8018547 CCTCACAATA
Statistics
Matches: 176, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:8022252 original size:13 final size:13
Alignment explanation
Indices: 8022234--8022261 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8022224 GTCCGTTTAT
8022234 TAAACTAATTAAC
1 TAAACTAATTAAC
8022247 TAAACTAATTAAC
1 TAAACTAATTAAC
8022260 TA
1 TA
8022262 CTTACTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:8039411 original size:26 final size:26
Alignment explanation
Indices: 8039375--8039425 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
8039365 AAATCACTTC
8039375 GTCTTCATGTGCTGGGCTTTACTCAA
1 GTCTTCATGTGCTGGGCTTTACTCAA
*
8039401 GTCTTCATGTGTTGGGCTTTACTCA
1 GTCTTCATGTGCTGGGCTTTACTCA
8039426 TCCAATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.41
Consensus pattern (26 bp):
GTCTTCATGTGCTGGGCTTTACTCAA
Found at i:8041657 original size:11 final size:11
Alignment explanation
Indices: 8041619--8041667 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
8041609 ATAAAAACAA
8041619 CAAAATAATAG
1 CAAAATAATAG
8041630 CAATAA-AATAG
1 CAA-AATAATAG
**
8041641 TGAAATAATAG
1 CAAAATAATAG
*
8041652 CAAAATAGTAG
1 CAAAATAATAG
8041663 CAAAA
1 CAAAA
8041668 CAACAGTAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 2 0.06
11 27 0.87
12 2 0.06
ACGTcount: A:0.61, C:0.08, G:0.12, T:0.18
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:8043130 original size:25 final size:27
Alignment explanation
Indices: 8043093--8043145 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
8043083 TCAAACATGC
8043093 ATTTAGGTCAATTTAACC-CTAGGGGT
1 ATTTAGGTCAATTTAACCACTAGGGGT
* *
8043119 ATTTCGGT-AATTTATCCACTAGGGGT
1 ATTTAGGTCAATTTAACCACTAGGGGT
8043145 A
1 A
8043146 AAACTGCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACCACTAGGGGT
Found at i:8044680 original size:52 final size:52
Alignment explanation
Indices: 8044623--8044730 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
8044613 TGAAATGCCC
8044623 ATCATGGAATATTTACCTAAAT-CATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCT-AATCCATTATCATGGAACATTTACCTAACCCATT
*
8044675 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCGTT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
8044727 ATCA
1 ATCA
8044731 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
51 3 0.06
52 51 0.94
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:8044728 original size:26 final size:26
Alignment explanation
Indices: 8044623--8044730 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
8044613 TGAAATGCCC
* **
8044623 ATCATGGAATATTTACCTAAATCATT
1 ATCATGGAACATTTACCTAACCCATT
8044649 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
8044675 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8044701 ATCATGGAACATTTACCTAACCCGTT
1 ATCATGGAACATTTACCTAACCCATT
8044727 ATCA
1 ATCA
8044731 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8051351 original size:48 final size:48
Alignment explanation
Indices: 8051280--8051374 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
8051270 AATCTTCATT
*
8051280 TCATCATTTTAAAGCACAACATGTTAGCCGATTTTTCCCCTTAGCATC
1 TCATCATTTTAAAGCACAACATGTTAGCCAATTTTTCCCCTTAGCATC
8051328 TCATCATTTTAAAGCACAACATGTTAGCCAATTTTTCCCCTTAGCAT
1 TCATCATTTTAAAGCACAACATGTTAGCCAATTTTTCCCCTTAGCAT
8051375 TTAAGGCACA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (48 bp):
TCATCATTTTAAAGCACAACATGTTAGCCAATTTTTCCCCTTAGCATC
Found at i:8051799 original size:26 final size:26
Alignment explanation
Indices: 8051768--8051875 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
8051758 TGAAATGCCC
*
8051768 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8051794 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
8051820 ATCATGGAATATTCACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
8051846 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8051872 ATCA
1 ATCA
8051876 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8057983 original size:28 final size:28
Alignment explanation
Indices: 8057935--8057994 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
8057925 TTTAATTTGA
* *
8057935 ATATATATTTTATGTTATTAAAATATTT
1 ATATATATTTTATGATATTAAAATATCT
* *
8057963 ATATATTTTTTATAGAT-TTAATATATCT
1 ATATATATTTTAT-GATATTAAAATATCT
8057991 ATAT
1 ATAT
8057995 TTCATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (28 bp):
ATATATATTTTATGATATTAAAATATCT
Found at i:8058025 original size:24 final size:23
Alignment explanation
Indices: 8057961--8058025 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
8057951 ATTAAAATAT
*
8057961 TTATATATTTTTTATAGATTTAA
1 TTATATATTTTTTATATATTTAA
* * * *
8057984 TATATCTATATTTCATATTTTTATA
1 T-TATATATTTTTTATATATTTA-A
*
8058009 TTATTTATTTTTTATAT
1 TTATATATTTTTTATAT
8058026 CATTATTTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
23 1 0.03
24 29 0.91
25 2 0.06
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (23 bp):
TTATATATTTTTTATATATTTAA
Found at i:8058036 original size:15 final size:16
Alignment explanation
Indices: 8058001--8058037 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
8057991 ATATTTCATA
*
8058001 TTTTTATATTATTTAT
1 TTTTTATATCATTTAT
8058017 TTTTTATATCA-TTAT
1 TTTTTATATCATTTAT
8058032 TTTTTA
1 TTTTTA
8058038 AGTTTCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTATATCATTTAT
Found at i:8062639 original size:24 final size:25
Alignment explanation
Indices: 8062612--8062667 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
8062602 TTTATCTTTA
*
8062612 AATTTTTGTAAATAT-ATATTTCTT
1 AATTTTTCTAAATATAATATTTCTT
* * *
8062636 AATTTTTCTAATTTTAATATTTTTT
1 AATTTTTCTAAATATAATATTTCTT
8062661 AATTTTT
1 AATTTTT
8062668 TATGCATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (25 bp):
AATTTTTCTAAATATAATATTTCTT
Found at i:8064499 original size:20 final size:20
Alignment explanation
Indices: 8064474--8064513 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8064464 AACAGATCAA
8064474 TTAAGTCTGATAGGGTTGTT
1 TTAAGTCTGATAGGGTTGTT
*
8064494 TTAAGTCTGTTAGGGTTGTT
1 TTAAGTCTGATAGGGTTGTT
8064514 ATCTTCTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.30, T:0.47
Consensus pattern (20 bp):
TTAAGTCTGATAGGGTTGTT
Found at i:8075467 original size:14 final size:14
Alignment explanation
Indices: 8075448--8075474 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8075438 AAGAAAGATG
8075448 AAGAGCCATAATCA
1 AAGAGCCATAATCA
8075462 AAGAGCCATAATC
1 AAGAGCCATAATC
8075475 TTTTTCCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.15
Consensus pattern (14 bp):
AAGAGCCATAATCA
Found at i:8077119 original size:33 final size:33
Alignment explanation
Indices: 8077010--8077154 Score: 89
Period size: 33 Copynumber: 4.4 Consensus size: 33
8077000 AAAACATGGT
* *
8077010 TGGGCCATGGCAATATATGTGTAAGACCATAGC
1 TGGGCCATGGCAACATACGTGTAAGACCATAGC
* * * * * *
8077043 TAGGCAATGGCATCCT--GATGATAATACCATATC
1 TGGGCCATGGCAACATACG-TG-TAAGACCATAGC
* ** * *
8077076 TGAGATATGGCACCATGA-GTGTAAGACCATGGC
1 TGGGCCATGGCAACAT-ACGTGTAAGACCATAGC
* *
8077109 TGGGCCATGGCAATATACGTGTAAGACCATAGT
1 TGGGCCATGGCAACATACGTGTAAGACCATAGC
* *
8077142 TGGACTATGGCAA
1 TGGGCCATGGCAA
8077155 TCTGACGAGA
Statistics
Matches: 82, Mismatches: 25, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
31 1 0.01
32 3 0.04
33 75 0.91
34 2 0.02
35 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (33 bp):
TGGGCCATGGCAACATACGTGTAAGACCATAGC
Found at i:8077371 original size:46 final size:46
Alignment explanation
Indices: 8077148--8077349 Score: 273
Period size: 46 Copynumber: 4.4 Consensus size: 46
8077138 TAGTTGGACT
* *
8077148 ATGGCAATC-TGACGAGAAATGAATAAGACCATGGTTGAAAAATATC
1 ATGGCAA-CATGACAAGAAATGAATAAGACCATGGTTGAAAAATACC
* * * * *
8077194 ATGGCAACATGACAGGAAATAAATAAGACCATGGGTGAAAGATAAC
1 ATGGCAACATGACAAGAAATGAATAAGACCATGGTTGAAAAATACC
* *
8077240 ATGGCAACGTGACAAGAAATGAATAAGACCATGGTTGAAAGATACC
1 ATGGCAACATGACAAGAAATGAATAAGACCATGGTTGAAAAATACC
* * *
8077286 ATGACAACGTGACAAGAAATGAATAAGACCATAGTTGAAAAATACC
1 ATGGCAACATGACAAGAAATGAATAAGACCATGGTTGAAAAATACC
8077332 ATGGCAACATGAC-AGAAA
1 ATGGCAACATGACAAGAAA
8077350 ATTAGTAAGA
Statistics
Matches: 139, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
45 6 0.04
46 133 0.96
ACGTcount: A:0.47, C:0.14, G:0.22, T:0.17
Consensus pattern (46 bp):
ATGGCAACATGACAAGAAATGAATAAGACCATGGTTGAAAAATACC
Found at i:8077382 original size:46 final size:46
Alignment explanation
Indices: 8077148--8077406 Score: 272
Period size: 46 Copynumber: 5.7 Consensus size: 46
8077138 TAGTTGGACT
* * * *
8077148 ATGGCAATC-TGACGAGAAATGAATAAGACCATGGTTGAAAAATATC
1 ATGGCAA-CATGACAAGAAATGAATAAGACCATAGTTGAAAGATACC
* * * * *
8077194 ATGGCAACATGACAGGAAATAAATAAGACCATGGGTGAAAGATAAC
1 ATGGCAACATGACAAGAAATGAATAAGACCATAGTTGAAAGATACC
* *
8077240 ATGGCAACGTGACAAGAAATGAATAAGACCATGGTTGAAAGATACC
1 ATGGCAACATGACAAGAAATGAATAAGACCATAGTTGAAAGATACC
* * *
8077286 ATGACAACGTGACAAGAAATGAATAAGACCATAGTTGAAAAATACC
1 ATGGCAACATGACAAGAAATGAATAAGACCATAGTTGAAAGATACC
* * * * *
8077332 ATGGCAACATGAC-AGAAAATTAGTAAGACTATAGTTGAAAGACACT
1 ATGGCAACATGACAAG-AAATGAATAAGACCATAGTTGAAAGATACC
* * * *
8077378 ATGGCATCATGTCAA-AGATAAATAAGACC
1 ATGGCAACATGACAAGAAATGAATAAGACC
8077407 GTGGATGGGA
Statistics
Matches: 182, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
45 13 0.07
46 168 0.92
47 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (46 bp):
ATGGCAACATGACAAGAAATGAATAAGACCATAGTTGAAAGATACC
Found at i:8082236 original size:21 final size:21
Alignment explanation
Indices: 8082210--8082250 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8082200 CGACAACGGT
8082210 TACGGGATAG-GAGTGTTACAA
1 TACGGGATAGCG-GTGTTACAA
*
8082231 TACGGGTTAGCGGTGTTACA
1 TACGGGATAGCGGTGTTACA
8082251 TTGCTGACGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (21 bp):
TACGGGATAGCGGTGTTACAA
Found at i:8083260 original size:16 final size:17
Alignment explanation
Indices: 8083241--8083273 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8083231 TCAAAATGAT
*
8083241 TGAAATTATAT-TTATA
1 TGAAATAATATATTATA
8083257 TGAAATAATATATTATA
1 TGAAATAATATATTATA
8083274 AATTAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (17 bp):
TGAAATAATATATTATA
Found at i:8083357 original size:22 final size:22
Alignment explanation
Indices: 8083323--8083364 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8083313 TAAGAAATTG
* *
8083323 TTAAAAAATATATTTATATTCA
1 TTAAAAAACATATTAATATTCA
*
8083345 TTAATAAACATATTAATATT
1 TTAAAAAACATATTAATATT
8083365 AACCTATAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAAAAAACATATTAATATTCA
Found at i:8085034 original size:89 final size:88
Alignment explanation
Indices: 8084893--8085056 Score: 310
Period size: 89 Copynumber: 1.9 Consensus size: 88
8084883 CCAACTAGAT
8084893 TTTAAGTGTCAACTTAAATTTTCAAATGGGGATGAAAATAGATTTTTAATTAAATAAATTTAATT
1 TTTAAGTGTCAACTTAAATTTTCAAATGGGGATGAAAATAGATTTTTAATTAAATAAATTTAATT
8084958 AATTAAAATTAGTCCATCTAAAA
66 AATTAAAATTAGTCCATCTAAAA
*
8084981 TTTAAGTGTCTAACTTAAATTTTCAAATGGGGATGAAAATAGATTTTTGATTAAATAAATTTAAT
1 TTTAAGTGTC-AACTTAAATTTTCAAATGGGGATGAAAATAGATTTTTAATTAAATAAATTTAAT
8085046 TAATTAAAATT
65 TAATTAAAATT
8085057 TTTAAACATT
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
88 10 0.14
89 64 0.86
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.40
Consensus pattern (88 bp):
TTTAAGTGTCAACTTAAATTTTCAAATGGGGATGAAAATAGATTTTTAATTAAATAAATTTAATT
AATTAAAATTAGTCCATCTAAAA
Found at i:8085334 original size:18 final size:18
Alignment explanation
Indices: 8085311--8085345 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8085301 TGAAATATGT
*
8085311 ATAAACCCAAAATAAATC
1 ATAAACCCAAAACAAATC
8085329 ATAAACCCAAAACAAAT
1 ATAAACCCAAAACAAAT
8085346 GACGAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14
Consensus pattern (18 bp):
ATAAACCCAAAACAAATC
Found at i:8085833 original size:28 final size:28
Alignment explanation
Indices: 8085782--8085835 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
8085772 AACAAAATAA
*
8085782 TAACATAAGTGACAAAAACGTAACATTT
1 TAACATAAGTGACAAAAACATAACATTT
* *
8085810 TAACATAAGTGACTAAAATATAACAT
1 TAACATAAGTGACAAAAACATAACAT
8085836 GAGGCAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.52, C:0.13, G:0.09, T:0.26
Consensus pattern (28 bp):
TAACATAAGTGACAAAAACATAACATTT
Found at i:8091059 original size:49 final size:49
Alignment explanation
Indices: 8090993--8091237 Score: 292
Period size: 49 Copynumber: 4.9 Consensus size: 49
8090983 TAGATAAGGC
* * *
8090993 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
8091042 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * **
8091092 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACATACGTGATTGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
8091143 TATCGGGTACGCATAGTAGCCTGCAGTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
8091192 TATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
8091238 TCACAATAGA
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 82 0.50
50 46 0.28
51 35 0.21
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:8093752 original size:18 final size:17
Alignment explanation
Indices: 8093717--8093778 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 17
8093707 TTAAAAATAA
*
8093717 TTAAAATAATATTTAATT
1 TTAAAATAATA-TAAATT
8093735 TTAAAATAATGATAAATT
1 TTAAAATAAT-ATAAATT
8093753 AAAATTAAAA-AATATAAATT
1 ----TTAAAATAATATAAATT
8093773 TTAAAA
1 TTAAAA
8093779 AATTTATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
16 6 0.16
18 15 0.39
19 1 0.03
20 7 0.18
21 3 0.08
22 6 0.16
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
TTAAAATAATATAAATT
Found at i:8096845 original size:8 final size:8
Alignment explanation
Indices: 8096832--8096862 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8096822 CTACTACTTT
8096832 TATTTTGA
1 TATTTTGA
*
8096840 TATTTTGT
1 TATTTTGA
8096848 TATTTTGA
1 TATTTTGA
8096856 TATTTTG
1 TATTTTG
8096863 TTATAACTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (8 bp):
TATTTTGA
Found at i:8096852 original size:16 final size:16
Alignment explanation
Indices: 8096831--8096866 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
8096821 ACTACTACTT
8096831 TTATTTTGATATTTTG
1 TTATTTTGATATTTTG
8096847 TTATTTTGATATTTTG
1 TTATTTTGATATTTTG
8096863 TTAT
1 TTAT
8096867 AACTTGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.69
Consensus pattern (16 bp):
TTATTTTGATATTTTG
Found at i:8096875 original size:18 final size:16
Alignment explanation
Indices: 8096831--8096879 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
8096821 ACTACTACTT
*
8096831 TTATTTTGATATTTTG
1 TTATCTTGATATTTTG
*
8096847 TTATTTTGATATTTTG
1 TTATCTTGATATTTTG
8096863 TTATAACTTGATATTTT
1 TTAT--CTTGATATTTT
8096880 ATGTAACGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 20 0.67
18 10 0.33
ACGTcount: A:0.22, C:0.02, G:0.10, T:0.65
Consensus pattern (16 bp):
TTATCTTGATATTTTG
Found at i:8099220 original size:1 final size:1
Alignment explanation
Indices: 8099214--8099240 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
8099204 AAGCAAGGTC
8099214 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
8099241 GGCAAAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8100236 original size:13 final size:13
Alignment explanation
Indices: 8100209--8100244 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8100199 ATTATGAATG
8100209 GTTAAAATT-AAA
1 GTTAAAATTAAAA
*
8100221 GTTAAAGTTAAAA
1 GTTAAAATTAAAA
8100234 GTTAAAATTAA
1 GTTAAAATTAA
8100245 TTTATACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 8 0.38
13 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (13 bp):
GTTAAAATTAAAA
Found at i:8102105 original size:90 final size:90
Alignment explanation
Indices: 8101963--8102418 Score: 626
Period size: 90 Copynumber: 5.1 Consensus size: 90
8101953 ACCATAAAAA
* * *** * * * *
8101963 TTGCAGGTTAATATGCTGCCAGATGGTTGTGAATGTATAACATATTTACAAATGAGAGCTG-TCG
1 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCT-A
** *
8102027 GAATGTGGGTGGATGAACCACCAGTG
65 GAAAATCGGTGGATGAACCACCAGTG
8102053 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
1 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
8102118 AAAATCGGTGGATGAACCACCAGTG
66 AAAATCGGTGGATGAACCACCAGTG
8102143 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
1 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
8102208 AAAATCGGTGGATGAACCACCAGTG
66 AAAATCGGTGGATGAACCACCAGTG
8102233 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
1 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
8102298 AAAATCGGTGGATGAACCACCAGTG
66 AAAATCGGTGGATGAACCACCAGTG
* * *** * ** * * ** * *
8102323 TTGCAGGTTAATAAGGTATTAGATGATTGTGAATGCAAAACATATTTGTAAATAAAAGCTGCCAG
1 TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
* * * *
8102388 ATAATCTGTGGATGAACCACTAGGG
66 AAAATCGGTGGATGAACCACCAGTG
8102413 TTGCAG
1 TTGCAG
8102419 ATTATTAATC
Statistics
Matches: 335, Mismatches: 30, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
90 334 1.00
91 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (90 bp):
TTGCAGGTTAATACGTTGCCAGATGGTTGTGAACACACAACGTATTTACAAATGAAAGCTGCTAG
AAAATCGGTGGATGAACCACCAGTG
Found at i:8105188 original size:28 final size:28
Alignment explanation
Indices: 8105121--8105174 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
8105111 TTTCTTAGGC
* *
8105121 AAAACTGT-AAATCTAAAAAATAGGGGA
1 AAAAGTGTAAAATCTAAAAAATAGAGGA
8105148 AAAAGTGTAAAATCTAAAAAATAGAGG
1 AAAAGTGTAAAATCTAAAAAATAGAGG
8105175 CAACTTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.57, C:0.06, G:0.19, T:0.19
Consensus pattern (28 bp):
AAAAGTGTAAAATCTAAAAAATAGAGGA
Found at i:8105890 original size:24 final size:24
Alignment explanation
Indices: 8105862--8105914 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8105852 ATTCGCAGGT
* *
8105862 TAAATAAATTATGCTAATAAATGC
1 TAAATAAATTATACTAATAAATAC
* *
8105886 TAAATATATTATACTAATTAATAC
1 TAAATAAATTATACTAATAAATAC
8105910 TAAAT
1 TAAAT
8105915 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
TAAATAAATTATACTAATAAATAC
Found at i:8110444 original size:14 final size:14
Alignment explanation
Indices: 8110408--8110451 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
8110398 CCGGGCCCAT
8110408 AATTAAATAAATAAA
1 AATTAAA-AAATAAA
** *
8110423 AAACAAAAAACAAA
1 AATTAAAAAATAAA
8110437 AATTAAAAAATAAA
1 AATTAAAAAATAAA
8110451 A
1 A
8110452 GTTCATTTAC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (14 bp):
AATTAAAAAATAAA
Found at i:8111683 original size:17 final size:16
Alignment explanation
Indices: 8111655--8111693 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
8111645 TAAAATTAAA
*
8111655 TTAAATTAAATTTTTT
1 TTAAATTAAATTTATT
*
8111671 TTGAAATTCAATTTATT
1 TT-AAATTAAATTTATT
8111688 TTAAAT
1 TTAAAT
8111694 ACTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (16 bp):
TTAAATTAAATTTATT
Found at i:8111834 original size:15 final size:16
Alignment explanation
Indices: 8111814--8111854 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
8111804 TTATATTTTA
8111814 TTATATATTG-TTACT
1 TTATATATTGATTACT
*
8111829 TTATATATTGATTATT
1 TTATATATTGATTACT
8111845 TTACTATATT
1 TTA-TATATT
8111855 TTTATATGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 7 0.30
17 6 0.26
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (16 bp):
TTATATATTGATTACT
Found at i:8123765 original size:44 final size:44
Alignment explanation
Indices: 8123714--8124283 Score: 625
Period size: 44 Copynumber: 13.0 Consensus size: 44
8123704 AGCAGATCCA
* *
8123714 AGCAGATTTGGTGTCTCTGTATTGTCAGGGAGCAGATCAAAGTT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
*
8123758 AGCAGATTTGGCGTCTCTGTATTGTTAGGGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* *
8123802 AGCAGATTTGGTGTCTCTGTATTGTCAGGGAGCAGATCAAAGTT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* * * *
8123846 AGCAGATTTGGCGTCTCTATATTGTCAGTGAGTAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
*
8123890 AGCAGATTTGGCGTCTCTGTATTGTTAGGGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* * * *
8123934 AGCAGATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* * ** * *
8123978 AACAGATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCCAAGAT
1 AGCAGATTTGGCGTCTCTGTATT-GTCAGG-GAGCAGATCAAAGAT
* * * * *
8124023 ----GATTTGGCATCT-TCGTATT-TGACGAGGAGTAAATCCAAGA-
1 AGCAGATTTGGCGTCTCT-GTATTGTCA-G-GGAGCAGATCAAAGAT
* * **
8124063 AACATATTTGGCGTCTCTGTATTGTCAAAGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* * ** *
8124107 AGCAGATTTGGCATCTCTGTATTGTCAGGGAGCAAATTGAGGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* * * *
8124151 AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGAC
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
* * *
8124195 AGCAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
** * * *
8124239 AGCAGATTTGGTATCTTTGTATTGTCAGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
8124283 A
1 A
8124284 TCAACATGGC
Statistics
Matches: 447, Mismatches: 66, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
41 29 0.06
42 1 0.00
43 11 0.02
44 388 0.87
45 18 0.04
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
AGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCAAAGAT
Found at i:8124059 original size:41 final size:41
Alignment explanation
Indices: 8123982--8124062 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
8123972 GAAGATAACA
*
8123982 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCCAAGAT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAAATCCAAGAT
* * * *
8124023 GATTTGGCATCTTCGTATTTGAC-GAGGAGTAAATCCAAGA
1 GATTTGGCATCTCCATATTCGACGGA-GAGCAAATCCAAGA
8124063 AACATATTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (41 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAAATCCAAGAT
Found at i:8124580 original size:6 final size:7
Alignment explanation
Indices: 8124563--8124588 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8124553 TTAAATAAAT
8124563 AAAAAAC
1 AAAAAAC
8124570 AAAAAAC
1 AAAAAAC
8124577 AAAAAAC
1 AAAAAAC
8124584 AAAAA
1 AAAAA
8124589 TTAAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:8124594 original size:14 final size:14
Alignment explanation
Indices: 8124559--8124601 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
8124549 ATAATTAAAT
8124559 AAATAAAAAACAAA
1 AAATAAAAAACAAA
*
8124573 AAACAAAAAACAAA
1 AAATAAAAAACAAA
* *
8124587 AATTAAAAAATAAA
1 AAATAAAAAACAAA
8124601 A
1 A
8124602 GTTCATTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (14 bp):
AAATAAAAAACAAA
Found at i:8124595 original size:8 final size:7
Alignment explanation
Indices: 8124554--8124601 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
8124544 GGCCCATAAT
8124554 TAAATAAA
1 TAAA-AAA
8124562 TAAAAAA
1 TAAAAAA
*
8124569 CAAAAAA
1 TAAAAAA
*
8124576 CAAAAAA
1 TAAAAAA
* *
8124583 CAAAAAT
1 TAAAAAA
8124590 TAAAAAA
1 TAAAAAA
8124597 TAAAA
1 TAAAA
8124602 GTTCATTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
7 32 0.89
8 4 0.11
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (7 bp):
TAAAAAA
Found at i:8125686 original size:10 final size:9
Alignment explanation
Indices: 8125672--8125770 Score: 52
Period size: 9 Copynumber: 11.1 Consensus size: 9
8125662 TTTTATAAAT
8125672 TTTATTATA
1 TTTATTATA
8125681 TGTTA-TAT-
1 T-TTATTATA
8125689 TTTATTATA
1 TTTATTATA
8125698 TGTTATT-TA
1 T-TTATTATA
8125707 TTCTATTTATA
1 TT-TA-TTATA
8125718 TTTTATTATA
1 -TTTATTATA
*
8125728 --TATTGT-
1 TTTATTATA
8125734 TTCTATATATA
1 TT-TAT-TATA
*
8125745 TTGATTAT-
1 TTTATTATA
*
8125753 TTTACTATA
1 TTTATTATA
8125762 TTT-TTATA
1 TTTATTATA
8125770 T
1 T
8125771 GTAAATTTAC
Statistics
Matches: 70, Mismatches: 6, Indels: 29
0.67 0.06 0.28
Matches are distributed among these distances:
7 8 0.11
8 16 0.23
9 19 0.27
10 19 0.27
11 6 0.09
12 2 0.03
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (9 bp):
TTTATTATA
Found at i:8125692 original size:17 final size:17
Alignment explanation
Indices: 8125670--8125728 Score: 81
Period size: 17 Copynumber: 3.7 Consensus size: 17
8125660 ATTTTTATAA
8125670 ATTTTATTATATGTTAT
1 ATTTTATTATATGTTAT
8125687 ATTTTATTATATG-T-T
1 ATTTTATTATATGTTAT
*
8125702 A-TTTATTCTAT-TTAT
1 ATTTTATTATATGTTAT
8125717 ATTTTATTATAT
1 ATTTTATTATAT
8125729 ATTGTTTCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
14 10 0.27
15 4 0.11
16 10 0.27
17 13 0.35
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (17 bp):
ATTTTATTATATGTTAT
Done.