Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 290 of 310
Found at i:95484330 original size:31 final size:31
Alignment explanation
Indices: 95484289--95484352 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
95484279 CCTTTTCATA
*
95484289 TTTCATATTTCATAACACTGGGCCGAAACCT
1 TTTCAAATTTCATAACACTGGGCCGAAACCT
** *
95484320 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAACCT
95484351 TT
1 TT
95484353 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAACCT
Found at i:95484600 original size:24 final size:23
Alignment explanation
Indices: 95484546--95484691 Score: 141
Period size: 25 Copynumber: 6.0 Consensus size: 23
95484536 TGCTTTATCA
*
95484546 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCCT-TTT
*
95484570 TAGTAACTGGGGCAAAAGCACTTTT
1 TA-TAACTGGGGCATAAGC-CTTTT
95484595 TATAACTGGGGCATAAGCCTTTT
1 TATAACTGGGGCATAAGCCTTTT
*
95484618 ATCATAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAG-CCTT-TT
* *
95484645 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCTTTT
* * *
95484668 AATAACTAGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCTTTT
95484691 T
1 T
95484692 GCACTTCCTC
Statistics
Matches: 105, Mismatches: 10, Indels: 15
0.81 0.08 0.12
Matches are distributed among these distances:
23 27 0.26
24 24 0.23
25 47 0.45
26 6 0.06
27 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCTTTT
Found at i:95484768 original size:20 final size:20
Alignment explanation
Indices: 95484745--95484787 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
95484735 GAACATCTCG
95484745 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
95484765 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
95484785 TGT
1 TGT
95484788 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:95484852 original size:25 final size:25
Alignment explanation
Indices: 95484824--95484871 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95484814 ATGTATAAAC
* * *
95484824 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
95484849 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
95484872 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:95486061 original size:27 final size:27
Alignment explanation
Indices: 95486031--95486097 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
95486021 GGCATATTCA
*
95486031 TCATTTTACCTTACAGGGG-TATTACGG
1 TCATTTTACCCTACAGGGGCT-TTACGG
95486058 TCATTTTACCCTACAGGGGCTTTACGG
1 TCATTTTACCCTACAGGGGCTTTACGG
*
95486085 TCACTTTACCCTA
1 TCATTTTACCCTA
95486098 ATAGGGGCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCTTTACGG
Found at i:95486134 original size:25 final size:26
Alignment explanation
Indices: 95486099--95486170 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
95486089 TTTACCCTAA
* *
95486099 TAGGGGCATTTTAGTCA-TTACAAAC
1 TAGGGGTATTTTAGTAATTTACAAAC
*
95486124 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTAGTAA-TTTACAAAC
*
95486151 TAAGGGTATTTTAGTAATTT
1 TAGGGGTATTTTAGTAATTT
95486171 TGTAAATCGA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
25 14 0.35
26 3 0.08
27 23 0.57
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
TAGGGGTATTTTAGTAATTTACAAAC
Found at i:95486157 original size:27 final size:27
Alignment explanation
Indices: 95486116--95486171 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
95486106 ATTTTAGTCA
* *
95486116 TTACAAACTAGGGGTATTTTGGTAATT
1 TTACAAACTAAGGGTATTTTAGTAATT
95486143 TTACAAACTAAGGGTATTTTAGTAATT
1 TTACAAACTAAGGGTATTTTAGTAATT
95486170 TT
1 TT
95486172 GTAAATCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (27 bp):
TTACAAACTAAGGGTATTTTAGTAATT
Found at i:95486183 original size:27 final size:27
Alignment explanation
Indices: 95486127--95486212 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
95486117 TACAAACTAG
* **
95486127 GGGTATTTTGGTAATTTTACAAA-CTAA
1 GGGTATTTTAGTAATTTTGTAAATC-AA
*
95486154 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTGTAAATCAA
***
95486181 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTATTTTAGTAATTTTGTAAATCAA
95486208 GGGTA
1 GGGTA
95486213 AAATAGTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTGTAAATCAA
Found at i:95486297 original size:27 final size:27
Alignment explanation
Indices: 95486164--95486299 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 27
95486154 GGGTATTTTA
**
95486164 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACG
* **
95486191 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACG
* * **
95486218 GTAATTCTATAAATCGACAGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACG
* *
95486245 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACG
* *
95486272 GTAATTTTGTAAGTCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACG
95486299 G
1 G
95486300 GGGTAAAATG
Statistics
Matches: 93, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACG
Found at i:95486304 original size:38 final size:38
Alignment explanation
Indices: 95486253--95486334 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 38
95486243 CGATAATTCT
* * *
95486253 GTAAATCGAGGGTAAAACGGTAATTTTGTAAGTCAAGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCAAGG
* * *
95486291 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCAGGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCAAGG
95486329 GTAAAA
1 GTAAAA
95486335 TGGTAATTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.24
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACGGTAATTATGTAAATCAAGG
Found at i:95486356 original size:27 final size:27
Alignment explanation
Indices: 95486292--95486358 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
95486282 AAGTCAAGGG
* *
95486292 TAAAACGGGGGTAAAATGGTAATTATG
1 TAAATCGGGGGTAAAATGGTAATTATA
* *
95486319 TAAATCAGGGGTAAAATGGTAATTCTA
1 TAAATCGGGGGTAAAATGGTAATTATA
*
95486346 TAAATTGGGGGTA
1 TAAATCGGGGGTA
95486359 CTTTGGTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.39, C:0.04, G:0.28, T:0.28
Consensus pattern (27 bp):
TAAATCGGGGGTAAAATGGTAATTATA
Found at i:95486385 original size:27 final size:27
Alignment explanation
Indices: 95486364--95486453 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
95486354 GGGTACTTTG
*
95486364 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
95486391 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
95486418 GTATTTTTACAAA-CTAAGCGTATTTCA
1 GTAATTTTACAAATCGAAG-GTATTTCA
95486445 GTAATTTTA
1 GTAATTTTA
95486454 GTAAACTAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:95486395 original size:54 final size:54
Alignment explanation
Indices: 95486337--95486450 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
95486327 GGGTAAAATG
* * * * *
95486337 GTAATTCTATAAATTGGGGGTACTTT-GGTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTCTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGCGTATTTCA
* * *
95486391 GTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGCGTATTTCA
1 GTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCA
95486445 GTAATT
1 GTAATT
95486451 TTAGTAAACT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 7 0.14
54 43 0.86
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
GTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCA
Found at i:95486467 original size:27 final size:26
Alignment explanation
Indices: 95486364--95486468 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 26
95486354 GGGTACTTTG
* * *
95486364 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAAGTATTTCA
* **
95486391 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAAGTATTTCA
* *
95486418 GTATTTTTACAAACTAAGCGTATTTCA
1 GTAATTTTACAAACTAA-AGTATTTCA
*
95486445 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAAGTATT
95486469 CTAAACAGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
26 2 0.03
27 57 0.86
28 7 0.11
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAAGTATTTCA
Found at i:95487462 original size:3 final size:3
Alignment explanation
Indices: 95487454--95487486 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
95487444 TGTTACAATA
95487454 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
95487487 GAAGGAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:95488087 original size:22 final size:24
Alignment explanation
Indices: 95488062--95488109 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
95488052 AATTCTATGC
95488062 TAAATTGATAA-AGAT-TAA-TATA
1 TAAATT-ATAATAGATATAATTATA
95488084 TAAATTATAATAGATATAATTATA
1 TAAATTATAATAGATATAATTATA
95488108 TA
1 TA
95488110 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTATAATAGATATAATTATA
Found at i:95495346 original size:11 final size:11
Alignment explanation
Indices: 95495332--95495365 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
95495322 ATGGGATGGA
95495332 AAAAGTGAGAG
1 AAAAGTGAGAG
95495343 AAAAGTGAGAG
1 AAAAGTGAGAG
*
95495354 AGAA-TGAGAG
1 AAAAGTGAGAG
95495364 AA
1 AA
95495366 TGTTGTGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.56, C:0.00, G:0.35, T:0.09
Consensus pattern (11 bp):
AAAAGTGAGAG
Found at i:95499899 original size:15 final size:15
Alignment explanation
Indices: 95499879--95499935 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
95499869 CGATGAATTT
95499879 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
95499894 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
*
95499909 ATTGAATTTATATTT
1 ATTGAATTTATATTG
*
95499924 ATTTAA-TTATAT
1 ATTGAATTTATAT
95499936 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:95505748 original size:47 final size:47
Alignment explanation
Indices: 95505690--95506046 Score: 237
Period size: 47 Copynumber: 7.7 Consensus size: 47
95505680 TCCATAAGTG
95505690 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * * * *
95505737 AACTCAGACTCAACTCAACAAGTTC--A-GAC-A-TTCGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-TCA
*
95505780 GTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 ---AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * * * *
95505830 AACTCAGACTCAACTCAACAAGTTC--A-GAC-A-TTCGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-TCA
*
95505873 GTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 ---AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * * * *
95505923 AACTCAGACTCAACTCAACAAGTTC--A-GAC-A-TTCGCATC-CATAA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-TCA
* *
95505966 GTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCG
1 ---AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* *
95506016 AACTCGAACTCAACTCAACGAGTTCGGATGC
1 AACTCGGACTCAACTCAACGAGCTCGGATGC
95506047 TCAACCATCC
Statistics
Matches: 232, Mismatches: 45, Indels: 66
0.68 0.13 0.19
Matches are distributed among these distances:
42 9 0.04
43 21 0.09
44 6 0.03
45 3 0.01
46 63 0.27
47 92 0.40
48 3 0.01
49 6 0.03
50 20 0.09
51 9 0.04
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:95505800 original size:46 final size:46
Alignment explanation
Indices: 95505737--95505987 Score: 180
Period size: 46 Copynumber: 5.4 Consensus size: 46
95505727 ACATCTCTCA
*
95505737 AACTCAGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
1 AACTCAGACCCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
* * * * * *
95505783 AACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-TCA---
1 AACTCAGACCCAACTCAACAAGTTC--A-GAC-A-TTCGCATC-CATAAGTG
*
95505830 AACTCAGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
1 AACTCAGACCCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
* * * * * *
95505876 AACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-TCA---
1 AACTCAGACCCAACTCAACAAGTTC--A-GAC-A-TTCGCATC-CATAAGTG
*
95505923 AACTCAGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
1 AACTCAGACCCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
*
95505969 AACTCGGACCCAACTCAAC
1 AACTCAGACCCAACTCAAC
95505988 GAGCTCGGAT
Statistics
Matches: 153, Mismatches: 30, Indels: 44
0.67 0.13 0.19
Matches are distributed among these distances:
42 6 0.04
43 14 0.09
44 4 0.03
45 2 0.01
46 59 0.39
47 42 0.27
48 2 0.01
49 4 0.03
50 14 0.09
51 6 0.04
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.21
Consensus pattern (46 bp):
AACTCAGACCCAACTCAACAAGTTCAGACATTCGCATCCATAAGTG
Found at i:95506062 original size:93 final size:93
Alignment explanation
Indices: 95505674--95506040 Score: 691
Period size: 93 Copynumber: 3.9 Consensus size: 93
95505664 AGCTCGGGTG
*
95505674 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
1 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
95505739 CTCAGACTCAACTCAACAAGTTCAGACA
66 CTCAGACTCAACTCAACAAGTTCAGACA
95505767 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
1 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
95505832 CTCAGACTCAACTCAACAAGTTCAGACA
66 CTCAGACTCAACTCAACAAGTTCAGACA
95505860 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
1 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
95505925 CTCAGACTCAACTCAACAAGTTCAGACA
66 CTCAGACTCAACTCAACAAGTTCAGACA
*
95505953 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAA
1 TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
*
95506018 CTC-GAACTCAACTCAACGAGTTC
66 CTCAG-ACTCAACTCAACAAGTTC
95506041 GGATGCTCAA
Statistics
Matches: 270, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
92 1 0.00
93 269 1.00
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (93 bp):
TTCGCATCCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAA
CTCAGACTCAACTCAACAAGTTCAGACA
Found at i:95511577 original size:39 final size:40
Alignment explanation
Indices: 95511373--95511595 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
95511363 TTGAATGCTG
* * * * * *
95511373 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
95511413 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
95511453 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
95511493 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
95511533 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
95511572 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
95511596 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:95511615 original size:79 final size:80
Alignment explanation
Indices: 95511448--95511630 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
95511438 GTGCGAGATA
* * *
95511448 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
95511513 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
95511528 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
95511592 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
95511607 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
95511631 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:95520182 original size:29 final size:29
Alignment explanation
Indices: 95520149--95520205 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
95520139 GATTATTCCA
*
95520149 ATCAAAAATATACTCATTAAGGTTTCTAT
1 ATCAAAAATATACTCATTAAGATTTCTAT
95520178 ATCAAAAATATACTCATTAAGATTTCTA
1 ATCAAAAATATACTCATTAAGATTTCTA
95520206 AGCATATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (29 bp):
ATCAAAAATATACTCATTAAGATTTCTAT
Found at i:95530016 original size:46 final size:46
Alignment explanation
Indices: 95529886--95530032 Score: 179
Period size: 46 Copynumber: 3.2 Consensus size: 46
95529876 AAGCTTCTCT
* * * * * *
95529886 TGAGCTGATAGACAGTAGGCTCTAATGAGCTAAAACGGTAAACTCTAA
1 TGAGCTGA-A-ACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
* * *
95529934 TGAGCTG-AATAGTAAGCTCTTTCAAGCTGAAACGGTAAGCTCCAA
1 TGAGCTGAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
*
95529979 TGAGCTGAAACAGTAAGCTCTTACGAGCTGAATCGGTAAGCTCCAA
1 TGAGCTGAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
95530025 TGAGCTGA
1 TGAGCTGA
95530033 GTTGTGGTGA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
45 35 0.41
46 43 0.51
48 7 0.08
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (46 bp):
TGAGCTGAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
Found at i:95530029 original size:23 final size:23
Alignment explanation
Indices: 95529886--95530032 Score: 111
Period size: 23 Copynumber: 6.3 Consensus size: 23
95529876 AAGCTTCTCT
* * *
95529886 TGAGCTGATAGACAGTAGGCTCTAA
1 TGAGCTGA-A-ACGGTAAGCTCCAA
* * *
95529911 TGAGCTAAAACGGTAAACTCTAA
1 TGAGCTGAAACGGTAAGCTCCAA
**
95529934 TGAGCTGAATA--GTAAGCT-CTT
1 TGAGCTGAA-ACGGTAAGCTCCAA
*
95529955 TCAAGCTGAAACGGTAAGCTCCAA
1 T-GAGCTGAAACGGTAAGCTCCAA
* **
95529979 TGAGCTGAAACAGTAAGCTCTTA
1 TGAGCTGAAACGGTAAGCTCCAA
* *
95530002 CGAGCTGAATCGGTAAGCTCCAA
1 TGAGCTGAAACGGTAAGCTCCAA
95530025 TGAGCTGA
1 TGAGCTGA
95530033 GTTGTGGTGA
Statistics
Matches: 95, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
21 2 0.02
22 13 0.14
23 69 0.73
24 4 0.04
25 7 0.07
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (23 bp):
TGAGCTGAAACGGTAAGCTCCAA
Found at i:95530176 original size:9 final size:9
Alignment explanation
Indices: 95530162--95530187 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
95530152 AAGACATTCA
95530162 TATTTCAAG
1 TATTTCAAG
95530171 TATTTCAAG
1 TATTTCAAG
95530180 TATTTCAA
1 TATTTCAA
95530188 ATATATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (9 bp):
TATTTCAAG
Found at i:95539238 original size:43 final size:42
Alignment explanation
Indices: 95539172--95539258 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 42
95539162 AGCTCGTACA
* *
95539172 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGAAATCAAATA-CG
*
95539215 ATGCCACTATCCCAGACAG-GGTCTTACATGAAATCAAATACG
1 ATGCCAATATCCCAGAC-GTGGTCTTACATGAAATCAAATACG
95539257 AT
1 AT
95539259 ACCTGTAACA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 4 0.10
43 35 0.88
44 1 0.03
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGAAATCAAATACG
Found at i:95540570 original size:47 final size:45
Alignment explanation
Indices: 95540460--95540584 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 45
95540450 TTATTTTTGT
*
95540460 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCA-CCACATTACGAGA
* * *
95540506 TCCAATGTAAGACCATGTCTGGGACATGGCATCA-C-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCACCACATT---ACGAGA
* *
95540554 GCTAGTGTGAGACATGTCTAGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
95540585 GGTCTCGAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
45 4 0.06
46 15 0.23
47 27 0.42
48 19 0.29
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCACCACATTACGAGA
Found at i:95540615 original size:46 final size:45
Alignment explanation
Indices: 95540457--95540676 Score: 130
Period size: 46 Copynumber: 4.8 Consensus size: 45
95540447 GGGTTATTTT
* * * *
95540457 TGTGCTAGTGTAAG-ACATGTCTGGGACATGCATCAGCCAC-ATTA
1 TGTGCCAGTGTAAGAACATGTCTGGGACATGCATCGGCTACGA-GA
* * * **
95540501 TGAGATCCAATGTAAGACCATGTCTGGGACATGGCATCACCATTGA-GACGA
1 TGTG--CCAGTGTAAGAACATGTCTGGGACAT-GCATCGGC--T-ACGA-GA
* * * *
95540552 -GAGCTAGTGTGAG-ACATGTCTAGGACATGCATCGGTCT-CGAGA
1 TGTGCCAGTGTAAGAACATGTCTGGGACATGCATCGG-CTACGAGA
* *
95540595 TGTAAGCCAGTGTAA-AACATGTCTGGGACACGCATTGGCTACGAGA
1 TGT--GCCAGTGTAAGAACATGTCTGGGACATGCATCGGCTACGAGA
* *
95540641 TGTGTCAGTGTAAGACCATGTCTGGGACATGACATC
1 TGTGCCAGTGTAAGAACATGTCTGGGACATG-CATC
95540677 TGCATGTATA
Statistics
Matches: 134, Mismatches: 25, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
43 2 0.01
44 15 0.11
45 18 0.13
46 51 0.38
47 28 0.21
48 14 0.10
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
TGTGCCAGTGTAAGAACATGTCTGGGACATGCATCGGCTACGAGA
Found at i:95550917 original size:28 final size:28
Alignment explanation
Indices: 95550869--95550959 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
95550859 GTGACAGAGT
*
95550869 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
95550898 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
95550926 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
95550954 CACCAG
1 CACCAG
95550960 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:95551112 original size:28 final size:28
Alignment explanation
Indices: 95551065--95551126 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
95551055 AAATTAACCC
* *
95551065 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGCATAAAGGTAATTTTGCATACA
*
95551093 TAGGGGCATAATGGTAATTTTGCATACA
1 TAGGGGCATAAAGGTAATTTTGCATACA
95551121 TAGGGG
1 TAGGGG
95551127 TATTCTAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (28 bp):
TAGGGGCATAAAGGTAATTTTGCATACA
Found at i:95558201 original size:20 final size:21
Alignment explanation
Indices: 95558166--95558205 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
95558156 GACTAAATCA
95558166 AAAACATATAAAAATTTTCAG
1 AAAACATATAAAAATTTTCAG
*
95558187 AAAACA-ATGAAAATTTTCA
1 AAAACATATAAAAATTTTCA
95558206 AAACTGTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (21 bp):
AAAACATATAAAAATTTTCAG
Found at i:95560578 original size:46 final size:45
Alignment explanation
Indices: 95560528--95560699 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 45
95560518 TAAGCATCCA
95560528 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* * * * **
95560574 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCCG
95560621 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG-CTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTC-CG
* * *
95560667 AGCTCATTGATTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95560700 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 55 0.54
47 27 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCG
Found at i:95560682 original size:93 final size:93
Alignment explanation
Indices: 95560521--95560691 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
95560511 GGATGGTTAA
*
95560521 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
95560586 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
95560614 GCATCTAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG-CTCGAGCTCATTGAT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-CGAACTCATTGAG
95560678 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
95560692 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:95575486 original size:20 final size:20
Alignment explanation
Indices: 95575453--95575496 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
95575443 GAGATGTGTG
*
95575453 ATGAATGGCGCATGTGCTAA-
1 ATGAATGGAGCATG-GCTAAT
*
95575473 ATGAATGGATCATGGCTAAT
1 ATGAATGGAGCATGGCTAAT
95575493 ATGA
1 ATGA
95575497 TATAATTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGAATGGAGCATGGCTAAT
Found at i:95577477 original size:16 final size:15
Alignment explanation
Indices: 95577456--95577514 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 15
95577446 TTAATAACTT
95577456 TAATATTAAATTAATA
1 TAATATTAAATTAA-A
*
95577472 TAATATT-TATTAAGA
1 TAATATTAAATTAA-A
*
95577487 TAAATATTATATTAAA
1 T-AATATTAAATTAAA
95577503 TTAATATTAAAT
1 -TAATATTAAAT
95577515 CTTATTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 7 0.19
16 23 0.62
17 7 0.19
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
TAATATTAAATTAAA
Found at i:95577498 original size:21 final size:20
Alignment explanation
Indices: 95577459--95577499 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
95577449 ATAACTTTAA
*
95577459 TATTAAATTAATATAATATT
1 TATTAAATAAATATAATATT
*
95577479 TATTAAGATAAATATTATATT
1 TATTAA-ATAAATATAATATT
95577500 AAATTAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TATTAAATAAATATAATATT
Found at i:95584112 original size:39 final size:39
Alignment explanation
Indices: 95584069--95584146 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
95584059 TTAAACGTTG
*
95584069 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
*
95584108 AGGTTAGCATTTGGGTTGTTCAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
95584147 TTAGGGAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:95585890 original size:47 final size:47
Alignment explanation
Indices: 95585779--95586669 Score: 1548
Period size: 47 Copynumber: 18.9 Consensus size: 47
95585769 ATTCTAAATT
* **
95585779 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGC
95585828 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95585875 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95585922 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95585969 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586016 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586063 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586110 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586157 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586204 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586251 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586298 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
95586345 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
* **
95586392 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
* *
95586439 GTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
1 GTG-ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
* * **
95586487 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGC
95586536 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
**
95586583 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
* * ** * * *
95586630 GTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
95586670 CATAAATGTG
Statistics
Matches: 813, Mismatches: 26, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 686 0.84
48 44 0.05
49 83 0.10
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (47 bp):
GTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGC
Found at i:95586859 original size:37 final size:37
Alignment explanation
Indices: 95586805--95586880 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
95586795 GAGTTCTAAG
* * *
95586805 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
*
95586842 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
95586879 GA
1 GA
95586881 TTTCGTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
Found at i:95591055 original size:27 final size:27
Alignment explanation
Indices: 95591025--95591202 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
95591015 ATATTGAGTC
* * * *
95591025 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
95591052 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
95591079 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
95591107 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
95591134 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
95591161 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
95591188 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95591203 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:95591164 original size:82 final size:81
Alignment explanation
Indices: 95591046--95591201 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
95591036 TGCTATATAA
*
95591046 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
95591111 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
95591128 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
95591192 CACTTAGTGC
65 CACTTAGTGC
95591202 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:95594592 original size:26 final size:25
Alignment explanation
Indices: 95594563--95594646 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
95594553 TGGTACAAAT
95594563 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
95594589 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
95594615 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
95594641 TGATAA
1 TGATAA
95594647 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
26 52 0.95
27 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:95596276 original size:27 final size:27
Alignment explanation
Indices: 95596235--95596347 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
95596225 GAGGAAGCGT
*
95596235 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
95596262 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
95596289 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
95596317 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
95596343 TCTGG
1 TCTGG
95596348 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:95596340 original size:54 final size:54
Alignment explanation
Indices: 95596233--95596347 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
95596223 TGGAGGAAGC
*
95596233 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
95596287 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
95596341 GTTCTGG
1 GTTCTGG
95596348 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:95610159 original size:166 final size:166
Alignment explanation
Indices: 95609885--95610217 Score: 621
Period size: 166 Copynumber: 2.0 Consensus size: 166
95609875 GCCACACAGC
95609885 TTGGTTAACAGCTCCAGCTGCTGCTACATACTCTGCCTCAGCAGTTGACTAAGAAACTACATTTT
1 TTGGTTAACAGCTCCAGCTGCTGCTACATACTCTGCCTCAGCAGTTGACTAAGAAACTACATTTT
*
95609950 GTTTCTTTGAGCTCTAACAAAAAATGGCTGAGCCAAGGGTGAAAACATACCTTGAGGTGCTCTTC
66 GTTTCTTCGAGCTCTAACAAAAAATGGCTGAGCCAAGGGTGAAAACATACCTTGAGGTGCTCTTC
* *
95610015 ATGTCATCCATCGAGCCAGCCCAGTCATTGTCAGTA
131 ATGTCATCCATCGAGCAAGCCCAGTCACTGTCAGTA
*
95610051 TTGGTTAACAGCTCCAGCTGCTGCTACATACTCTGCCTCAGCAGTTGACTAAGCAACTACATTTT
1 TTGGTTAACAGCTCCAGCTGCTGCTACATACTCTGCCTCAGCAGTTGACTAAGAAACTACATTTT
95610116 GTTTCTTCGAGCTCTAACAAAAAATGGCTGAGCCAAGGGTGAAAACATACCTTGAGGTGCTCTTC
66 GTTTCTTCGAGCTCTAACAAAAAATGGCTGAGCCAAGGGTGAAAACATACCTTGAGGTGCTCTTC
*
95610181 ATGTCATCCATCGAGCAAGTCCAGTCACTGTCAGTA
131 ATGTCATCCATCGAGCAAGCCCAGTCACTGTCAGTA
95610217 T
1 T
95610218 AGCCAACAAA
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
166 162 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (166 bp):
TTGGTTAACAGCTCCAGCTGCTGCTACATACTCTGCCTCAGCAGTTGACTAAGAAACTACATTTT
GTTTCTTCGAGCTCTAACAAAAAATGGCTGAGCCAAGGGTGAAAACATACCTTGAGGTGCTCTTC
ATGTCATCCATCGAGCAAGCCCAGTCACTGTCAGTA
Found at i:95624828 original size:23 final size:23
Alignment explanation
Indices: 95624810--95624869 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
95624800 AAGAGCACGT
95624810 AAGTGCTAAATTT-AGGAGCACCA
1 AAGTGCT-AATTTCAGGAGCACCA
*
95624833 AAGTGCTAGTTTCAGGAGCACCA
1 AAGTGCTAATTTCAGGAGCACCA
* * *
95624856 TAGTACTAAATTCA
1 AAGTGCTAATTTCA
95624870 TAAGTGTGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 4 0.13
23 27 0.87
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (23 bp):
AAGTGCTAATTTCAGGAGCACCA
Found at i:95634305 original size:23 final size:23
Alignment explanation
Indices: 95634279--95634348 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
95634269 TTTGTTTAAG
* **
95634279 TTAAACGAACATATTTGTGAACA
1 TTAAACAAACATATTCATGAACA
*
95634302 TTAAACAAACATGTTCATGAACA
1 TTAAACAAACATATTCATGAACA
* *
95634325 TTAAACAAATATGTTCATGAACA
1 TTAAACAAACATATTCATGAACA
95634348 T
1 T
95634349 ATAATTGAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (23 bp):
TTAAACAAACATATTCATGAACA
Found at i:95635389 original size:9 final size:9
Alignment explanation
Indices: 95635375--95635401 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
95635365 AGCAAAACTT
95635375 AATTTAATC
1 AATTTAATC
95635384 AATTTAATC
1 AATTTAATC
95635393 AATTTAATC
1 AATTTAATC
95635402 TATACCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTTAATC
Found at i:95643777 original size:46 final size:46
Alignment explanation
Indices: 95643709--95643799 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
95643699 TATATATACA
* * *
95643709 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
95643755 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
95643800 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:95643844 original size:47 final size:47
Alignment explanation
Indices: 95643813--95644198 Score: 547
Period size: 47 Copynumber: 8.2 Consensus size: 47
95643803 CACTTCCACG
*
95643813 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* **
95643860 TTTATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* **
95643907 TTTATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* **
95643954 TTTATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
95644001 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
95644048 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
95644095 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * * **
95644142 TTCATCACATTTGTCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
95644189 TCCATCACAT
1 TTCATCACAT
95644199 AAAATCCTAA
Statistics
Matches: 316, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 316 1.00
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:95652167 original size:40 final size:41
Alignment explanation
Indices: 95652129--95652317 Score: 220
Period size: 41 Copynumber: 4.6 Consensus size: 41
95652119 TGCTTTTTTG
* * *
95652129 CATAAACGCCACAAAAGGTAAAGCAATAGCAGCGTTTTTCT
1 CATAAACGCCGCAAAAGGTAAAGCAATAGCAACATTTTTCT
** * *
95652170 CAT-AATTCCACAAAGGGTAAAGCAATAGCAACATTTTTCT
1 CATAAACGCCGCAAAAGGTAAAGCAATAGCAACATTTTTCT
**
95652210 CATAAACGCCGCAAAAGGTAAAAGCAATAGCGGCA-TTTTCT
1 CATAAACGCCGCAAAAGGT-AAAGCAATAGCAACATTTTTCT
* * * *
95652251 CATAAATGCTGCAAAAGGTAAAGTAATAGCAACGTTTTTCT
1 CATAAACGCCGCAAAAGGTAAAGCAATAGCAACATTTTTCT
* *
95652292 CATAAACGCTGCTAAAGGTAAAGCAA
1 CATAAACGCCGCAAAAGGTAAAGCAA
95652318 CAACGGTAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 46 0.37
41 66 0.53
42 13 0.10
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (41 bp):
CATAAACGCCGCAAAAGGTAAAGCAATAGCAACATTTTTCT
Found at i:95652289 original size:82 final size:81
Alignment explanation
Indices: 95652129--95652317 Score: 254
Period size: 82 Copynumber: 2.3 Consensus size: 81
95652119 TGCTTTTTTG
* * * *
95652129 CATAAACGCCACAAAAGGTAAAGCAATAGCAGCGTTTTTCTCATAATTCCACAAAGGGTAAAGCA
1 CATAAACGCCGCAAAAGGTAAAGCAATAGCAGCGATTTTCTCATAATGCCACAAAAGGTAAAGCA
95652194 ATAGCAACATTTTTCT
66 ATAGCAACATTTTTCT
* **
95652210 CATAAACGCCGCAAAAGGTAAAAGCAATAGCGGC-ATTTTCTCATAAATGCTGCAAAAGGTAAAG
1 CATAAACGCCGCAAAAGGT-AAAGCAATAGCAGCGATTTTCTCAT-AATGCCACAAAAGGTAAAG
* *
95652274 TAATAGCAACGTTTTTCT
64 CAATAGCAACATTTTTCT
* *
95652292 CATAAACGCTGCTAAAGGTAAAGCAA
1 CATAAACGCCGCAAAAGGTAAAGCAA
95652318 CAACGGTAAT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
81 34 0.36
82 61 0.64
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (81 bp):
CATAAACGCCGCAAAAGGTAAAGCAATAGCAGCGATTTTCTCATAATGCCACAAAAGGTAAAGCA
ATAGCAACATTTTTCT
Found at i:95655497 original size:17 final size:18
Alignment explanation
Indices: 95655461--95655500 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
95655451 AAGTTCATCC
95655461 ATCAAATATACATACGAT
1 ATCAAATATACATACGAT
* *
95655479 ATCATATATCCAT-CGAT
1 ATCAAATATACATACGAT
95655496 ATCAA
1 ATCAA
95655501 GCCATCGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (18 bp):
ATCAAATATACATACGAT
Found at i:95662334 original size:43 final size:43
Alignment explanation
Indices: 95662286--95662440 Score: 202
Period size: 43 Copynumber: 3.6 Consensus size: 43
95662276 TTATGTAAAA
* * **
95662286 AAACGCCGCTATAGAACATGATCTTTAGTTGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
*
95662329 AAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
95662372 AAACGCTGCTAAAGAACATGGCCTTTAGCGGCTCTTTTTCTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* *
95662415 AAACGCCGCTAAAAAATATGACCTTT
1 AAACGCCGCTAAAGAACATGACCTTT
95662441 GAAAAGTATA
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:95666504 original size:11 final size:11
Alignment explanation
Indices: 95666490--95666514 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
95666480 GAGTAAAATG
95666490 AGATGAGAAGA
1 AGATGAGAAGA
95666501 AGATGAGAAGA
1 AGATGAGAAGA
95666512 AGA
1 AGA
95666515 GGGAGTAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.08
Consensus pattern (11 bp):
AGATGAGAAGA
Found at i:95667579 original size:21 final size:21
Alignment explanation
Indices: 95667555--95667595 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
95667545 ATCAAACCCC
95667555 AAATCCTAGACCATAAACCTT
1 AAATCCTAGACCATAAACCTT
* * *
95667576 AAATCTTATACTATAAACCT
1 AAATCCTAGACCATAAACCT
95667596 CCACCCTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.29
Consensus pattern (21 bp):
AAATCCTAGACCATAAACCTT
Found at i:95667984 original size:14 final size:14
Alignment explanation
Indices: 95667965--95668005 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
95667955 CTCCTATCCC
*
95667965 CATAAACCTTAAAT
1 CATAAACCATAAAT
*
95667979 CATAAAACATAAAT
1 CATAAACCATAAAT
*
95667993 CATAAACCCTAAA
1 CATAAACCATAAA
95668006 CCCCTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (14 bp):
CATAAACCATAAAT
Found at i:95668051 original size:14 final size:14
Alignment explanation
Indices: 95668032--95668082 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
95668022 AATATATAAC
95668032 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
*
95668046 CCCTAACCCTTAAA
1 CCCTAAACCTTAAA
* * *
95668060 CCATAAACCATAAT
1 CCCTAAACCTTAAA
95668074 CCCTAAACC
1 CCCTAAACC
95668083 CATAATCCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (14 bp):
CCCTAAACCTTAAA
Found at i:95668054 original size:21 final size:21
Alignment explanation
Indices: 95668027--95668093 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
95668017 TAACCAATAT
*
95668027 ATAACCCCTAAACCTTAAACC
1 ATAACCCCTAAACCATAAACC
* *
95668048 CTAACCCTTAAACCATAAACC
1 ATAACCCCTAAACCATAAACC
* *
95668069 ATAATCCCTAAACCCATAATCC
1 ATAACCCCTAAA-CCATAAACC
95668091 ATA
1 ATA
95668094 TATAAACCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 27 0.71
22 11 0.29
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (21 bp):
ATAACCCCTAAACCATAAACC
Found at i:95668163 original size:14 final size:14
Alignment explanation
Indices: 95668120--95668169 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
95668110 GTAACTCCTA
95668120 AAACT-TAAACCCT
1 AAACTATAAACCCT
* * * *
95668133 AAACCATACATCTT
1 AAACTATAAACCCT
95668147 AAACTATAAACCCT
1 AAACTATAAACCCT
95668161 AAACTATAA
1 AAACTATAA
95668170 TGATAATTAA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
13 4 0.14
14 24 0.86
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACTATAAACCCT
Found at i:95668600 original size:40 final size:40
Alignment explanation
Indices: 95668522--95668629 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
95668512 AATTTTTTTG
* * *
95668522 CGGC-TTTTTTAAAAAAGCGCCGCTAATGGTCGACCTATAA
1 CGGCGTTTTTT-AAAAAGCACCGCTAATGCTCAACCTATAA
* * *
95668562 CGGCGTTTTTTAAAAAGCACCGCTAATGCTTAATCTATAG
1 CGGCGTTTTTTAAAAAGCACCGCTAATGCTCAACCTATAA
* * *
95668602 TGGCGTTTTTCAAAAAGCACTGCTAATG
1 CGGCGTTTTTTAAAAAGCACCGCTAATG
95668630 TCACTACAGC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 52 0.90
41 6 0.10
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (40 bp):
CGGCGTTTTTTAAAAAGCACCGCTAATGCTCAACCTATAA
Found at i:95668723 original size:40 final size:40
Alignment explanation
Indices: 95668679--95668844 Score: 210
Period size: 40 Copynumber: 4.2 Consensus size: 40
95668669 TTTTTTGCTT
* * *
95668679 CATTTTTCAAAAACCGCCGCTAATGGTCGA-CTTATAGCGG
1 CATTTTTCGAAAAGCGCCGCTAATGCTCGATC-TATAGCGG
* * * *
95668719 CATTTTTTGAAAAGCGCCACTAATACTCGATCTATAGTGG
1 CATTTTTCGAAAAGCGCCGCTAATGCTCGATCTATAGCGG
95668759 CATTTTTCGAAAAGCGCCGCTAATGCTCGATCTATAGCGG
1 CATTTTTCGAAAAGCGCCGCTAATGCTCGATCTATAGCGG
* * *
95668799 CATTTTTC-AAAATCGTCGCTAGTGCTCGATCTATAGCGG
1 CATTTTTCGAAAAGCGCCGCTAATGCTCGATCTATAGCGG
*
95668838 CGTTTTT
1 CATTTTT
95668845 TATCCAAACG
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.31
40 75 0.68
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (40 bp):
CATTTTTCGAAAAGCGCCGCTAATGCTCGATCTATAGCGG
Found at i:95668725 original size:154 final size:155
Alignment explanation
Indices: 95668439--95668784 Score: 469
Period size: 154 Copynumber: 2.2 Consensus size: 155
95668429 CTAAAGCTCG
* * *
95668439 ATCTATAGCGGCATTTTCCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCG
1 ATCTATAGTGGCATTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGACG
* * *
95668504 TTATGCTTAATTTTTTTGCGGCTTTTTTAAAAAAGCGCCGCTAATGGTCGACCTATAACGGCGTT
66 TTATGCTTAATTTTTTTGCGGCATTTTTAAAAAACCGCCGCTAATGGTCGACCTATAACGGCATT
* * *
95668569 TTTTAAAAAGCACCGCTAATGCTTA
131 TTTTAAAAAGCACCACTAATACTCA
* * * * *
95668594 ATCTATAGTGGCGTTTTTCAAAAAGCACTGCTAATGTCACTACAGCT-AACATAAAACGACGACG
1 ATCTATAGTGGCATTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGACG
* ** * * *
95668658 TTGTGCTTAATTTTTTTGCTTCATTTTTCAAAAACCGCCGCTAATGGTCGACTTATAGCGGCATT
66 TTATGCTTAATTTTTTTGCGGCATTTTTAAAAAACCGCCGCTAATGGTCGACCTATAACGGCATT
* * *
95668723 TTTTGAAAAGCGCCACTAATACTCG
131 TTTTAAAAAGCACCACTAATACTCA
*
95668748 ATCTATAGTGGCATTTTTCGAAAAGCGCCGCTAATGC
1 ATCTATAGTGGCATTTTTCAAAAAGCGCCGCTAATGC
95668785 TCGATCTATA
Statistics
Matches: 163, Mismatches: 28, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
154 123 0.75
155 40 0.25
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (155 bp):
ATCTATAGTGGCATTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGACG
TTATGCTTAATTTTTTTGCGGCATTTTTAAAAAACCGCCGCTAATGGTCGACCTATAACGGCATT
TTTTAAAAAGCACCACTAATACTCA
Found at i:95668845 original size:80 final size:80
Alignment explanation
Indices: 95668679--95668844 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 80
95668669 TTTTTTGCTT
* *
95668679 CATTTTTCAAAAACCGCCGCTAATGGTCGACTTATAGCGGCATTTTTTGAAAAGCGCCACTAATA
1 CATTTTTCAAAAACCGCCGCTAATGCTCGACTTATAGCGGCATTTTTTCAAAAGCGCCACTAATA
*
95668744 CTCGATCTATAGTGG
66 CTCGATCTATAGCGG
* * * * * *
95668759 CATTTTTCGAAAAGCGCCGCTAATGCTCGA-TCTATAGCGGCA-TTTTTCAAAATCGTCGCTAGT
1 CATTTTTCAAAAACCGCCGCTAATGCTCGACT-TATAGCGGCATTTTTTCAAAAGCGCCACTAAT
*
95668822 GCTCGATCTATAGCGG
65 ACTCGATCTATAGCGG
*
95668838 CGTTTTT
1 CATTTTT
95668845 TATCCAAACG
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 37 0.50
80 37 0.50
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (80 bp):
CATTTTTCAAAAACCGCCGCTAATGCTCGACTTATAGCGGCATTTTTTCAAAAGCGCCACTAATA
CTCGATCTATAGCGG
Found at i:95673076 original size:79 final size:81
Alignment explanation
Indices: 95672934--95673116 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
95672924 TACTCGTTCA
* *
95672934 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
95672998 TTTAGT-AGC-TCGCACC
66 TATAGTCA-CTTAGCA-C
**
95673014 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
95673076 ATATGGTCACTTAGCAC
65 ATATAGTCACTTAGCAC
*
95673093 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
95673117 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 29 0.32
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:95673116 original size:40 final size:40
Alignment explanation
Indices: 95672914--95673116 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
95672904 GGAATTTAAT
** *
95672914 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
95672954 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
95672994 CGGATTTAGTAGCTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
95673033 CGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
95673073 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
95673113 CGGA
1 CGGA
95673117 CATCATTCGA
Statistics
Matches: 138, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:95673289 original size:67 final size:67
Alignment explanation
Indices: 95673180--95673313 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
95673170 TCATTTTCAT
*
95673180 TAGCAAAACTCAAACACAAGACACTTATCACTCTTGCCATTTCGGCTCAATAGCCACACACAAAG
1 TAGCAAAACTCAAACACAAGACACTTATCACTCTTGCAATTTCGGCTCAATAGCCACACACAAAG
95673245 AG
66 AG
95673247 TAGCAAAACTCAAACACAAGACACTTATCACTCTTGCAATTTCGGCTCAATAGCCACACACAAAG
1 TAGCAAAACTCAAACACAAGACACTTATCACTCTTGCAATTTCGGCTCAATAGCCACACACAAAG
95673312 AG
66 AG
95673314 CATGATTTTG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.40, C:0.29, G:0.12, T:0.19
Consensus pattern (67 bp):
TAGCAAAACTCAAACACAAGACACTTATCACTCTTGCAATTTCGGCTCAATAGCCACACACAAAG
AG
Found at i:95673462 original size:39 final size:39
Alignment explanation
Indices: 95673408--95673482 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
95673398 ACCGATTCCA
*
95673408 ATGGCTATTCGACCACTTTTTCCTTCCCTTTATCGGTCG
1 ATGGCTATTCGACCACTTTTTCCATCCCTTTATCGGTCG
95673447 ATGGCTATTCGACCACTTTTTCCATCCCTTTATCGG
1 ATGGCTATTCGACCACTTTTTCCATCCCTTTATCGG
95673483 ATTTAGATCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.40
Consensus pattern (39 bp):
ATGGCTATTCGACCACTTTTTCCATCCCTTTATCGGTCG
Found at i:95674298 original size:150 final size:150
Alignment explanation
Indices: 95674120--95674419 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
95674110 AGAACTTAAT
*
95674120 GTCTCACTCAAAAATGCTAAAAAGAAAATCCAAGAGTTAATCAATCCACCATCACATGTATCATT
1 GTCTCACTCAAAAATGCTAAAAAGAAAATCCAAGAGTTAATCAATCAACCATCACATGTATCATT
95674185 AACAAGCTTCACATTTAGCATGCAATGACATTAACACAAAATCCACCTTGGCCGAATATCATCCC
66 AACAAGCTTCACATTTAGCATGCAATGACATTAACACAAAATCCACCTTGGCCGAATATCATCCC
95674250 CATGACATAGCAAAGATTTG
131 CATGACATAGCAAAGATTTG
95674270 GTCTCACTCAAAAATGCTAAAAAGAAAATCCAAGAGTTAATCAATCAACCATCACATGTATCATT
1 GTCTCACTCAAAAATGCTAAAAAGAAAATCCAAGAGTTAATCAATCAACCATCACATGTATCATT
95674335 AACAAGCTTCACATTTAGCATGCAATGACATTAACACAAAATCCACCTTGGCCGAATATCATCCC
66 AACAAGCTTCACATTTAGCATGCAATGACATTAACACAAAATCCACCTTGGCCGAATATCATCCC
95674400 CATGACATAGCAAAGATTTG
131 CATGACATAGCAAAGATTTG
95674420 AACCATGGCT
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.24
Consensus pattern (150 bp):
GTCTCACTCAAAAATGCTAAAAAGAAAATCCAAGAGTTAATCAATCAACCATCACATGTATCATT
AACAAGCTTCACATTTAGCATGCAATGACATTAACACAAAATCCACCTTGGCCGAATATCATCCC
CATGACATAGCAAAGATTTG
Found at i:95688546 original size:77 final size:77
Alignment explanation
Indices: 95688462--95688616 Score: 292
Period size: 77 Copynumber: 2.0 Consensus size: 77
95688452 AATTTATTTT
**
95688462 AAACAAAGATAAAATAAAATTAATCCTAATTTTATGCTAAATTGATAAAGATTAATATATAAATT
1 AAACAAAGATAAAATAAAATTAATCCTAATTTTATGCTAAATTGATAAAGATTAATATATAAAGG
95688527 ATAATAGATATA
66 ATAATAGATATA
95688539 AAACAAAGATAAAATAAAATTAATCCTAATTTTATGCTAAATTGATAAAGATTAATATATAAAGG
1 AAACAAAGATAAAATAAAATTAATCCTAATTTTATGCTAAATTGATAAAGATTAATATATAAAGG
95688604 ATAATAGATATA
66 ATAATAGATATA
95688616 A
1 A
95688617 TTATATATTA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (77 bp):
AAACAAAGATAAAATAAAATTAATCCTAATTTTATGCTAAATTGATAAAGATTAATATATAAAGG
ATAATAGATATA
Found at i:95691155 original size:22 final size:22
Alignment explanation
Indices: 95691123--95691165 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
95691113 TAGATACTAC
95691123 TTTCTTCTTATCTCTTCCGGTG
1 TTTCTTCTTATCTCTTCCGGTG
*
95691145 TTTCTTTTTATCTCTTCCGGT
1 TTTCTTCTTATCTCTTCCGGT
95691166 CTTTAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.05, C:0.26, G:0.12, T:0.58
Consensus pattern (22 bp):
TTTCTTCTTATCTCTTCCGGTG
Found at i:95691905 original size:42 final size:41
Alignment explanation
Indices: 95691854--95692011 Score: 129
Period size: 42 Copynumber: 3.8 Consensus size: 41
95691844 AGTTCCTATA
* *
95691854 AAGGTCATGCTCTTGAGTGGTGTTTGTGGGAAATCGCTGCT
1 AAGGTCATGCTCTTTAGTGGTGTTTATGGGAAATCGCTGCT
** ** *
95691895 CAAGGTCATGCTCTTTAGCAGCATTTATGGGAAAAGT-GCCGCT
1 -AAGGTCATGCTCTTTAGTGGTGTTTATGGG-AAA-TCGCTGCT
* * * *
95691938 AAGGTCATGTTCTTTAGTGGTGTTTTTAGGAAAAGCGCTGCT
1 AAGGTCATGCTCTTTAGTGGTGTTTAT-GGGAAATCGCTGCT
* * **
95691980 AAAGGTCATGTTCTTTAGCGACGTTTATGGGA
1 -AAGGTCATGCTCTTTAGTGGTGTTTATGGGA
95692012 GAAGCACCGC
Statistics
Matches: 90, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
42 56 0.62
43 33 0.37
44 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (41 bp):
AAGGTCATGCTCTTTAGTGGTGTTTATGGGAAATCGCTGCT
Found at i:95691996 original size:43 final size:43
Alignment explanation
Indices: 95691808--95692050 Score: 181
Period size: 43 Copynumber: 5.7 Consensus size: 43
95691798 GACAATGCCA
*
95691808 CTAAAGGTCATGTTTTTTAGCGGCGTTTTTAGGAAAAGTTC-CT-
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAG--CGCTG
* * * * * * * *
95691851 ATAAAGGTCATGCTCTTGAGTGGTGTTTGT-GGGAAATCGCTG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAGCGCTG
* * * * * * * *
95691893 CTCAAGGTCATGCTCTTTAGCAGCATTTATGGGAAAAGTGCCG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAGCGCTG
* *
95691936 CT-AAGGTCATGTTCTTTAGTGGTGTTTTTAGGAAAAGCGCTG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAGCGCTG
* * * * * *
95691978 CTAAAGGTCATGTTCTTTAGCGACGTTTATGGGAGAAGCACCG
1 CTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAGCGCTG
* *
95692021 CTAAAGGTCATGTAT-TATAGTGGCGTTTTT
1 CTAAAGGTCATGT-TCTTTAGCGGCGTTTTT
95692051 CCACATAAAC
Statistics
Matches: 153, Mismatches: 42, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 60 0.39
43 89 0.58
44 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (43 bp):
CTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAGCGCTG
Found at i:95692008 original size:85 final size:85
Alignment explanation
Indices: 95691808--95692050 Score: 258
Period size: 85 Copynumber: 2.9 Consensus size: 85
95691798 GACAATGCCA
* * * * * ** * *
95691808 CTAAAGGTCATGTTTTTTAGCGGCGTTTTTAGGAAAAGTTCCTATAAAGGTCATGCTCTTGAGTG
1 CTAAAGGTCATGTTCTTTAGCGACGTTTATGGGAAAAGTACCGCTAAAGGTCATGTTCTTTAGTG
* * *
95691873 GTGTTTGTGGGAAATCGCTG
66 GTGTTTTTGGAAAAGCGCTG
* * * *
95691893 CTCAAGGTCATGCTCTTTAGC-AGCATTTATGGGAAAAGTGCCGCT-AAGGTCATGTTCTTTAGT
1 CTAAAGGTCATGTTCTTTAGCGA-CGTTTATGGGAAAAGTACCGCTAAAGGTCATGTTCTTTAGT
95691956 GGTGTTTTTAGGAAAAGCGCTG
65 GGTGTTTTT-GGAAAAGCGCTG
* * *
95691978 CTAAAGGTCATGTTCTTTAGCGACGTTTATGGGAGAAGCACCGCTAAAGGTCATGTAT-TATAGT
1 CTAAAGGTCATGTTCTTTAGCGACGTTTATGGGAAAAGTACCGCTAAAGGTCATGT-TCTTTAGT
*
95692042 GGCGTTTTT
65 GGTGTTTTT
95692051 CCACATAAAC
Statistics
Matches: 130, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
84 24 0.18
85 81 0.62
86 24 0.18
87 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (85 bp):
CTAAAGGTCATGTTCTTTAGCGACGTTTATGGGAAAAGTACCGCTAAAGGTCATGTTCTTTAGTG
GTGTTTTTGGAAAAGCGCTG
Found at i:95694783 original size:21 final size:21
Alignment explanation
Indices: 95694759--95694798 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
95694749 GTGACTATAA
* *
95694759 GGGATTTATCCTGGACTGGCG
1 GGGATTTAGCCTAGACTGGCG
95694780 GGGATTTAGCCTAGACTGG
1 GGGATTTAGCCTAGACTGG
95694799 TAACCCCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.38, T:0.28
Consensus pattern (21 bp):
GGGATTTAGCCTAGACTGGCG
Found at i:95697109 original size:46 final size:46
Alignment explanation
Indices: 95697042--95697170 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
95697032 TGTAACCCGC
* *
95697042 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAG-TCGCAT
*
95697088 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACAGTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTCGCAT
*
95697134 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95697171 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 76 0.99
47 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTCGCAT
Found at i:95700347 original size:20 final size:20
Alignment explanation
Indices: 95700322--95700363 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
95700312 TAAAAGGGCT
*
95700322 TAATCGGTAAAAATACTTAA
1 TAATCGGTAAAAATACCTAA
95700342 TAATCGGTAAAAATACCTAA
1 TAATCGGTAAAAATACCTAA
95700362 TA
1 TA
95700364 GTCATAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (20 bp):
TAATCGGTAAAAATACCTAA
Found at i:95701346 original size:64 final size:64
Alignment explanation
Indices: 95701266--95701450 Score: 176
Period size: 67 Copynumber: 2.9 Consensus size: 64
95701256 AGACATTATG
* * * * *
95701266 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAAAGGTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGAGTACACCATGTAGACAAGAAAGCTACGAGATAA
* * * * *
95701330 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-AGTACACCATGTAGACAAGAAAGCTACGAGAT
95701395 AA
63 AA
* * * * * *
95701397 AT-TGGCTAGGTCACATGGGTGGTACTAAGCGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGAGTACACCATGTAG-ACAAGAAAGCT
95701451 GAACTATATG
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.26
66 22 0.22
67 30 0.31
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGAGTACACCATGTAGACAAGAAAGCTACGAGATAA
Found at i:95704677 original size:45 final size:45
Alignment explanation
Indices: 95704613--95704702 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
95704603 ATGAAAATAG
*
95704613 ATTCATCAAGGTTCGTTTACATGATTTATTCACTATTTAATTCCC
1 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCC
95704658 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCC
1 ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCC
95704703 TTCCTACTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (45 bp):
ATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCC
Found at i:95705545 original size:40 final size:40
Alignment explanation
Indices: 95705501--95705719 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
95705491 GCTACTCGTT
* * *
95705501 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
95705541 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
95705581 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
95705621 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
95705661 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
95705702 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
95705720 GCCTGGACAT
Statistics
Matches: 162, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 145 0.90
41 14 0.09
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:95713411 original size:39 final size:40
Alignment explanation
Indices: 95713316--95713538 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
95713306 TTGAATGATG
*
95713316 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
95713354 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
95713395 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
95713434 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
95713473 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
95713512 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
95713539 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:95713502 original size:79 final size:81
Alignment explanation
Indices: 95713316--95713538 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
95713306 TTGAATGATG
* * *
95713316 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
95713377 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
95713395 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
95713457 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
95713473 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
95713537 TG
66 TG
95713539 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:95713560 original size:79 final size:79
Alignment explanation
Indices: 95713316--95713571 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
95713306 TTGAATGATG
* * * *
95713316 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
95713377 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
95713395 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
95713459 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
95713473 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
95713537 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
95713553 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
95713572 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:95721327 original size:29 final size:28
Alignment explanation
Indices: 95721291--95721368 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
95721281 TCATGAGATT
95721291 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
95721321 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
95721348 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
95721369 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:95721586 original size:174 final size:174
Alignment explanation
Indices: 95721321--95721648 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
95721311 AAATTGTACA
95721321 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
95721386 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
95721451 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
95721495 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
95721560 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
95721625 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
95721649 ACCTTGAGTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:95739307 original size:30 final size:30
Alignment explanation
Indices: 95739273--95739329 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
95739263 TAACTCAAAC
95739273 TTTTGAAAAATTACAATTTTGCCCCTAAAA
1 TTTTGAAAAATTACAATTTTGCCCCTAAAA
* * * *
95739303 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
95739330 GGCTCAGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAA
Found at i:95747286 original size:6 final size:6
Alignment explanation
Indices: 95747263--95747337 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
95747253 GATCTCGATC
* * ** **
95747263 TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCTTTT TCAATT TCATTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT
95747312 TCTTTT TCTTATT CTCTTTT TGCTTT
1 TCTTTT TCTT-TT -TCTTTT T-CTTT
95747338 CTTTAACACC
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
6 37 0.70
7 12 0.23
8 4 0.08
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.71
Consensus pattern (6 bp):
TCTTTT
Found at i:95756657 original size:40 final size:40
Alignment explanation
Indices: 95755737--95756650 Score: 1699
Period size: 40 Copynumber: 22.9 Consensus size: 40
95755727 AGGTGACCAT
95755737 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
*
95755777 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
*
95755817 ATCCGGGCTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95755857 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95755897 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95755937 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95755977 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756017 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756057 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756097 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756137 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756177 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756217 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756257 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756297 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756337 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756377 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756417 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756457 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
95756497 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
*
95756537 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
** *
95756577 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTA-A
* * *
95756618 A-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGT
95756651 AGCTATATCC
Statistics
Matches: 861, Mismatches: 11, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
39 1 0.00
40 858 1.00
41 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAA
Found at i:95763921 original size:40 final size:40
Alignment explanation
Indices: 95763861--95764044 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
95763851 TATTCGAATG
* *
95763861 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTAACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
95763901 ATATCCGGACTAAGATCCGAAGGCATTTGT-TTGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCT-AG-TGACT
* * *
95763941 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
95763981 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
95764021 ATATCCGGGCTAAGA-CCTGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
95764045 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
39 4 0.03
40 116 0.94
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:95763994 original size:80 final size:80
Alignment explanation
Indices: 95763861--95764044 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 80
95763851 TATTCGAATG
* * *
95763861 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTAACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAG-TCCCGAAGGC
* * *
95763925 ATTTGT-TTGAGTTG-CT
65 ATTTATGCT-AG-TGACC
* * *
95763941 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
95764006 TTTATGCTAGTGACC
66 TTTATGCTAGTGACC
*
95764021 ATATCCGGGCTAAGACCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
95764045 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 3 0.03
80 87 0.96
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCTAGTGACC
Found at i:95767195 original size:27 final size:26
Alignment explanation
Indices: 95767160--95767271 Score: 152
Period size: 27 Copynumber: 4.2 Consensus size: 26
95767150 AGCATGGCTG
* *
95767160 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
95767186 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
95767214 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
95767241 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
95767268 CCAG
1 CCAG
95767272 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.08
27 55 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:95767224 original size:54 final size:54
Alignment explanation
Indices: 95767160--95767271 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
95767150 AGCATGGCTG
*
95767160 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
* *
95767214 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
95767268 CCAG
1 CCAG
95767272 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
Found at i:95770300 original size:16 final size:16
Alignment explanation
Indices: 95770279--95770310 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95770269 TGCTGGCATG
95770279 TCAGACATTTCCCTAC
1 TCAGACATTTCCCTAC
*
95770295 TCAGACATTTTCCTAC
1 TCAGACATTTCCCTAC
95770311 AAACTCTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.34, G:0.06, T:0.34
Consensus pattern (16 bp):
TCAGACATTTCCCTAC
Found at i:95774422 original size:20 final size:20
Alignment explanation
Indices: 95774397--95774440 Score: 65
Period size: 18 Copynumber: 2.3 Consensus size: 20
95774387 TTTGATTAAG
95774397 TCATTTTTAGGAAAATATTT
1 TCATTTTTAGGAAAATATTT
*
95774417 TCA--TTTCGGAAAATATTT
1 TCATTTTTAGGAAAATATTT
95774435 TCATTT
1 TCATTT
95774441 CGGAAGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 17 0.81
20 4 0.19
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (20 bp):
TCATTTTTAGGAAAATATTT
Found at i:95774429 original size:18 final size:18
Alignment explanation
Indices: 95774406--95774445 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
95774396 GTCATTTTTA
95774406 GGAAAATATTTTCATTTC
1 GGAAAATATTTTCATTTC
95774424 GGAAAATATTTTCATTTC
1 GGAAAATATTTTCATTTC
95774442 GGAA
1 GGAA
95774446 GCTTTGCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (18 bp):
GGAAAATATTTTCATTTC
Found at i:95775084 original size:27 final size:27
Alignment explanation
Indices: 95775020--95775131 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
95775010 AGCATGGCTG
* *
95775020 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
95775046 CTAGATATAGATAATTTTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
**
95775074 CCAGAACAGAT-ATATGTGGTGGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
95775101 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
95775128 CCAG
1 CCAG
95775132 GATGCCTTCT
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 6 0.09
27 46 0.68
28 16 0.24
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:95775547 original size:8 final size:8
Alignment explanation
Indices: 95775521--95775550 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
95775511 CAAAATATCA
95775521 GCTTTTCG
1 GCTTTTCG
*
95775529 GCATTTCG
1 GCTTTTCG
95775537 GCTTTTCG
1 GCTTTTCG
95775545 GCTTTT
1 GCTTTT
95775551 GCAGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:95781839 original size:48 final size:44
Alignment explanation
Indices: 95781789--95781967 Score: 153
Period size: 48 Copynumber: 3.8 Consensus size: 44
95781779 GCACAATATG
95781789 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGT
1 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC-A--TTGT
* * * *
95781836 GAGAGCCAGTATAAGGCCATGTTCGGGACATGGCATCGGCATTGAT
1 -AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T
* * * *
95781882 ACATGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGT
1 AGA-GC-C-AGTGTAAGACCATGTTTGGAACATGGCATCGG---C-A-TTGT
*
95781934 -GAGCCAGTGTAATACCATGTTTGGAACATGGCAT
1 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
95781968 TAGCAATTCA
Statistics
Matches: 108, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
45 5 0.05
46 3 0.03
47 2 0.02
48 89 0.82
49 1 0.01
50 2 0.02
51 2 0.02
52 2 0.02
53 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
Found at i:95785434 original size:49 final size:49
Alignment explanation
Indices: 95785362--95785777 Score: 289
Period size: 49 Copynumber: 8.8 Consensus size: 49
95785352 GGGTTAAGTT
95785362 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
95785411 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
* * * *
95785460 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGT-AT--AC
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATC-T-TCATCAAG
* ** * *
95785508 GTGCTGATG-CATGTCCCAGACA-TGTCTTACACTAGC-A--TGAAGCTTA-
1 GT-C-GATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATC-AAG
* * * * * *
95785554 GCCAATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCGTCGAG
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
* * *
95785601 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGC-A-CTGCTC-TCTAC
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCT--TCATCAAG
* * * * * **
95785647 G-CTGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCATAAT-GTG
1 GTC-GATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
* * * ** ** *
95785695 GTTGAT-ACATGTCCCAGACA-TGTCTTACACTAGCCCTCAAC-TCAAT
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
* * *
95785741 GCCGAGGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCT
95785778 CTCACATAAC
Statistics
Matches: 292, Mismatches: 51, Indels: 49
0.74 0.13 0.12
Matches are distributed among these distances:
44 30 0.10
45 5 0.02
46 29 0.10
47 71 0.24
48 46 0.16
49 102 0.35
50 8 0.03
51 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAG
Found at i:95785706 original size:141 final size:141
Alignment explanation
Indices: 95785365--95785776 Score: 415
Period size: 141 Copynumber: 2.9 Consensus size: 141
95785355 TTAAGTTGTC
* * * *
95785365 GATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAGGTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGCTATCATAAT--TGGTCGAT-ACATGTCCCAGA
* * *
95785430 CATTGTCTTACACTGGCTATCTTCATCAAGGTCGATGCCATGTCCCAGACATGGTCTTACACTAG
62 CA-TGTCTTACACTGGCTATCATC-TCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* *
95785495 CTCTCGTGTATACGTGCT
125 CACTCGTCTATACG-GCT
* * * * * * * *
95785513 GATG-CATGTCCCAGACATGTCTTACACTAGC-ATGA-AGCTTAGCCAATGCATGTCCCAGACAC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTATCATA-ATTGGTCGATACATGTCCCAGACAT
*
95785575 GTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACT
65 GTCTTACACTGGCTATCATC-TCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACT
*
95785638 -GCTCTCTAC-GCT
129 CG-TCTATACGGCT
* * *
95785650 GATGCCATGTCCTAGATATGGTCTTACACTGGCTATCATAATGTGGTTGATACATGTCCCAGACA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTATCATAAT-TGGTCGATACATGTCCCAGACA
* ** * * *
95785715 TGTCTTACACTAGCCCTCAACTCAATGCCGAGGCCATGTCCCAGACATGGTCTTACACTGGC
64 TGTCTTACACTGGCTATCATCTCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
95785777 TCTCACATAA
Statistics
Matches: 218, Mismatches: 37, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
137 7 0.03
138 13 0.06
139 31 0.14
140 27 0.12
141 77 0.35
142 26 0.12
143 4 0.02
145 3 0.01
146 13 0.06
147 13 0.06
148 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTATCATAATTGGTCGATACATGTCCCAGACATG
TCTTACACTGGCTATCATCTCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCG
TCTATACGGCT
Found at i:95785722 original size:94 final size:92
Alignment explanation
Indices: 95785364--95785777 Score: 361
Period size: 94 Copynumber: 4.4 Consensus size: 92
95785354 GTTAAGTTGT
* * * * *
95785364 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATCAAGGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATCGAGGCCGATG-CATGTCCCAG
* * *
95785429 ACATTGTCTTACACTGGCTATCTTCATCAAGGT
65 ACA-TGTCTTACACTAGC-ATC-TC-TCTA-GC
* * * * * *
95785462 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACG-TGCTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AAT-CGAGGCCGATGCATGTCCCA
**
95785526 GACATGTCTTACACTAGCATGAAGCT-TAGC
64 GACATGTCTTACACTAGCAT--CTCTCTAGC
* * **
95785556 CAATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
*
95785619 CATGTCTTACACTGGCACTGCTCTCTACGC
66 CATGTCTTACACTAGCA-T-CTCTCTA-GC
* * * * ** *
95785649 TGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCATAAT-GTGGTTGATACATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
* * *
95785713 CATGTCTTACACTAGCCCTCAACTCAATGC
66 CATGTCTTACACTAG-CATC-TCTCTA-GC
*
95785743 CGAGGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
95785778 CTCACATAAC
Statistics
Matches: 257, Mismatches: 47, Indels: 28
0.77 0.14 0.08
Matches are distributed among these distances:
90 2 0.01
91 36 0.14
92 19 0.07
93 19 0.07
94 85 0.33
95 22 0.09
96 3 0.01
97 14 0.05
98 49 0.19
99 7 0.03
100 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCATCTCTCTAGC
Found at i:95793034 original size:47 final size:49
Alignment explanation
Indices: 95792830--95793194 Score: 235
Period size: 47 Copynumber: 7.7 Consensus size: 49
95792820 GTTAAGTTGT
* * * *
95792830 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCATTGAGGT
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* * * * **
95792879 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-GTATACGTGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGA-G-GC
* * ** *
95792929 TGATG-CATGTCCCAGACA-TGTCTTACACTAGC-A-CAAAG-CTTA-GC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTC-GAGGC
*
95792973 CGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCGTCGAGGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* * *
95793020 CGATG-CATGTCCCAGACA-TGTCTTACACTGGC-ACTCCTC-TCTACGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCATCGTCGAGGC
* * * * ** *
95793066 TGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCATAAT-GTA-GT
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCG-AGGC
* * * ** * *
95793114 TGAT-ACATGTCCCAGACA-TGTCTTACACTAGCCCTCATC-TCAATGC
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
* * *
95793160 CGAGGCCATGTCCCAGACATGGTCTTACATTGGCT
1 CGATGCCATGTCCCAGACATTGTCTTACACTGGCT
95793195 CTCACATAAC
Statistics
Matches: 249, Mismatches: 49, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
44 31 0.12
45 3 0.01
46 34 0.14
47 76 0.31
48 47 0.19
49 53 0.21
50 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCGTCGAGGC
Found at i:95793123 original size:141 final size:138
Alignment explanation
Indices: 95792836--95793193 Score: 391
Period size: 141 Copynumber: 2.5 Consensus size: 138
95792826 TTGTCGATGC
* * *
95792836 CATGTCCCAGACATTGTCTTACACTGGCTATCTTCATTGAGGTCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACA-TGTCTTACACTGGCTATCATC-TCGAGGCCGATGCCATGTCCCAGACATGG
* * * *
95792901 TCTTACACTAGCTCTCGTGTATACGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAA
64 TCTTACACTGGCACTCCTCTATACG-GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAA
*
95792966 GCTTAGCCGATG
128 GC-TAGCCGATA
*
95792978 CATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAGACAT-GT
1 CATGTCCCAGACATGTCTTACACTGGCTATCATC-TCGAGGCCGATGCCATGTCCCAGACATGGT
* * * *
95793041 CTTACACTGGCACTCCTCTCTAC-GCTGATGCCATGTCCTAGATATGGTCTTACACTGGCTATCA
65 CTTACACTGGCACTCCTCTATACGGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CA
**
95793105 TAATG-TAGTTGATA
126 -AA-GCTAGCCGATA
* ** * * *
95793119 CATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATGCCGAGGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTGGCTATCATCTCGAGGCCGATGCCATGTCCCAGACATGGTC
*
95793184 TTACATTGGC
66 TTACACTGGC
95793194 TCTCACATAA
Statistics
Matches: 184, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
137 7 0.04
138 12 0.07
139 32 0.17
140 24 0.13
141 81 0.44
142 27 0.15
143 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (138 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATCTCGAGGCCGATGCCATGTCCCAGACATGGTC
TTACACTGGCACTCCTCTATACGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAAGCT
AGCCGATA
Found at i:95793139 original size:94 final size:92
Alignment explanation
Indices: 95792831--95793194 Score: 333
Period size: 94 Copynumber: 3.8 Consensus size: 92
95792821 TTAAGTTGTC
* * *
95792831 GATGCCATGTCCCAGACATTGTCTTACACTGGCTATCTTCAT-TGAGGTCGATGCCATGTCCCAG
1 GATG-CATGTCCCAGACA-TGTCTTACACTAGC-A-C-TCATCTTA-GCCGATGCCATGTCCCAG
* * * *
95792895 ACATGGTCTTACACTAGCTCTCGTGTATACGT-GCT
60 ACATGGTCTTACACTGGCTATC--ATA-ATGTAGCT
** * *
95792930 GATGCATGTCCCAGACATGTCTTACACTAGCACAAAGCTTAGCCGATG-CATGTCCCAGACA-CG
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTTAGCCGATGCCATGTCCCAGACATGG
** *
95792993 TCTTACACTGGCTATCATCGTCG-AGGCC
66 TCTTACACTGGCTATCATAAT-GTA-GCT
* * * * *
95793021 GATGCATGTCCCAGACATGTCTTACACTGGCACTCCTCTCTACGCTGATGCCATGTCCTAGATAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCT-TA-GCCGATGCCATGTCCCAGACAT
*
95793086 GGTCTTACACTGGCTATCATAATGTAGTT
64 GGTCTTACACTGGCTATCATAATGTAGCT
* * * *
95793115 GATACATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATGCCGAGGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCT-TA-GCCGATGCCATGTCCCAGACAT
*
95793180 GGTCTTACATTGGCT
64 GGTCTTACACTGGCT
95793195 CTCACATAAC
Statistics
Matches: 218, Mismatches: 38, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
90 2 0.01
91 36 0.17
92 17 0.08
93 19 0.09
94 89 0.41
95 24 0.11
96 1 0.00
97 13 0.06
98 13 0.06
99 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTTAGCCGATGCCATGTCCCAGACATGG
TCTTACACTGGCTATCATAATGTAGCT
Found at i:95798684 original size:27 final size:27
Alignment explanation
Indices: 95798631--95798840 Score: 143
Period size: 27 Copynumber: 7.7 Consensus size: 27
95798621 TTTCATCCTA
* * * * *
95798631 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
95798658 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
95798685 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
95798714 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
95798741 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
95798768 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
95798795 C-AGTGGTATTTTGGTAATTTTATAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * *
95798822 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
95798841 CTACCCTATA
Statistics
Matches: 145, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 113 0.78
28 15 0.10
29 15 0.10
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:95798759 original size:56 final size:55
Alignment explanation
Indices: 95798651--95798815 Score: 181
Period size: 54 Copynumber: 3.0 Consensus size: 55
95798641 TTGGTAAATC
* * *
95798651 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * * *
95798706 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** * ***
95798761 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
95798816 ATAAACTAGG
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 37 0.41
55 17 0.19
56 37 0.41
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (55 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:95798834 original size:81 final size:81
Alignment explanation
Indices: 95798718--95798873 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
95798708 GAAAGTCAAG
* * * *
95798718 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCGG
1 GGTATTTCTGTAATTTTATAAATCAGGGGTATTTTGGTAATTCTACCAAATAG-GGGTATTTCAG
95798782 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
**
95798799 GGTATTT-TGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCA
1 GGTATTTCT-GTAATTTTATAAATC-AGGGGTATTTTGGTAATTCTACCAAATAGGGGTATTTCA
95798862 GTAATTTCACAA
64 GTAATTTCACAA
95798874 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
80 2 0.03
81 60 0.91
82 4 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTATAAATCAGGGGTATTTTGGTAATTCTACCAAATAGGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:95798880 original size:27 final size:26
Alignment explanation
Indices: 95798738--95798880 Score: 101
Period size: 27 Copynumber: 5.3 Consensus size: 26
95798728 TAATTTTGTA
*
95798738 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTCAC
* *
95798764 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTTGGTAATTTCAC
* * * *
95798791 AAACCAGTGGTATTTTGGTAATTTTAT
1 -AATCAGGGGTATTTTGGTAATTTCAC
* *
95798818 AAACTAGGGGTATTTTGGTAATTCTACCC
1 AATC-AGGGGTATTTTGGTAATT-T-CAC
* **
95798847 TAT-AGGGGTATTTCAGTAATTTCAC
1 AATCAGGGGTATTTTGGTAATTTCAC
95798872 AATCGAGGG
1 AATC-AGGG
95798881 TAAAATGGTA
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
25 4 0.04
26 5 0.06
27 77 0.87
28 2 0.02
29 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTCAC
Found at i:95798891 original size:26 final size:27
Alignment explanation
Indices: 95798872--95798987 Score: 90
Period size: 27 Copynumber: 4.3 Consensus size: 27
95798862 GTAATTTCAC
*
95798872 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGCA
** * *
95798899 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGCA
* * * **
95798926 AATCAAGGGTAAAA-AGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGCA
*** *
95798952 AATCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTGCA
*
95798979 AGTCGAGGG
1 AATCGAGGG
95798988 CATTTCTGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
26 21 0.28
27 54 0.72
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGCA
Found at i:95798902 original size:27 final size:26
Alignment explanation
Indices: 95798872--95798962 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 26
95798862 GTAATTTCAC
* *
95798872 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAA-AGTAATTCTGTA
95798899 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAA-AGTAATTCTGTA
* *
95798926 AATCAAGGGTAAAAAGTAATTCTATA
1 AATCGAGGGTAAAAAGTAATTCTGTA
95798952 AATCGAGGGTA
1 AATCGAGGGTA
95798963 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 21 0.36
27 37 0.64
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (26 bp):
AATCGAGGGTAAAAAGTAATTCTGTA
Found at i:95798909 original size:53 final size:52
Alignment explanation
Indices: 95798852--95798987 Score: 132
Period size: 53 Copynumber: 2.6 Consensus size: 52
95798842 TACCCTATAG
* * * *
95798852 GGGTATTTCAGTAATTTCACAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAATCGAGGGTAAAA-AGTAATTCTATAAATCGA
*** *
95798905 GGGTAAAACAGTAATTCTGTA-AATCAAGGGTAAAAAGTAATTCTATAAATCGA
1 GGGTATTTCAGTAATT-T-TACAATCGAGGGTAAAAAGTAATTCTATAAATCGA
*
95798958 GGGTACTTT-GGTAATTTTACAAGTCGAGGG
1 GGGTA-TTTCAGTAATTTTACAA-TCGAGGG
95798988 CATTTCTGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
51 2 0.03
52 3 0.05
53 45 0.69
54 14 0.22
55 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.31
Consensus pattern (52 bp):
GGGTATTTCAGTAATTTTACAATCGAGGGTAAAAAGTAATTCTATAAATCGA
Found at i:95801152 original size:27 final size:27
Alignment explanation
Indices: 95801135--95801339 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
95801125 ATATCGAGTC
* * *
95801135 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
95801162 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
95801189 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
95801216 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** *** *
95801244 CGCACACTTAGTGCCGCACGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
95801271 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* * *
95801298 CGCACACTTAGTGCAACGTAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
95801325 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95801340 GTACAATTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:95806499 original size:137 final size:137
Alignment explanation
Indices: 95806253--95806526 Score: 512
Period size: 137 Copynumber: 2.0 Consensus size: 137
95806243 TCGGATTATT
* *
95806253 AGAGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGGCCCAAAGGGTTTGATACTCGAAT
1 AGAGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAAT
*
95806318 TACGAGCTCAGTAGACTCAACAGGTAGAGTCTTACTGGTTGCTAAGGTTTCGCATACATATGAAT
66 TACGAGCTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAAT
95806383 GAGTAGA
131 GAGTAGA
95806390 AGAGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAAT
1 AGAGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAAT
*
95806455 TACTAGCTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAAT
66 TACGAGCTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAAT
95806520 GAGTAGA
131 GAGTAGA
95806527 GCCAGGGTCA
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 133 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (137 bp):
AGAGGGCATCTCTTACACACTTTATCAACAAGTACGCATTGACCCAAAGGGTTTGACACTCGAAT
TACGAGCTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCGCATACATATGAAT
GAGTAGA
Found at i:95809518 original size:27 final size:27
Alignment explanation
Indices: 95809399--95809575 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
95809389 ATATCGAGTC
* * * * *
95809399 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * *
95809426 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
95809453 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTCAAA-T
** * *
95809481 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * **
95809508 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
95809535 CGCACACTTAGTGCAACGTAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
95809562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95809576 TGTACAATTT
Statistics
Matches: 129, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAAAT
Found at i:95809538 original size:82 final size:81
Alignment explanation
Indices: 95809420--95809575 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
95809410 TGCTATATAA
* *
95809420 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
95809485 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
95809502 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACGTAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
95809566 CACTTAGTGC
65 CACTTAGTGC
95809576 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:95811995 original size:86 final size:85
Alignment explanation
Indices: 95811894--95812050 Score: 212
Period size: 85 Copynumber: 1.8 Consensus size: 85
95811884 TGTGTTATCA
* * *
95811894 TGTAAGACCACGTCTGGGA-CGTTGGCATCGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGA
1 TGTAAGACCACGTCTGGGATAG-TGGCATCGATATT-TGA-TTACATGTAAGACCACGTCTGGGA
95811957 CATTGGCATCGTATATGATTTCG
63 CATTGGCATCGTATATGATTTCG
* *
95811980 TGTAAGACC-CTGTCTGGGATAGTGGTATCGATATTTGATTACATGTAAGACCACGTCTGGGACG
1 TGTAAGACCAC-GTCTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGACA
95812044 TTGGCAT
65 TTGGCAT
95812051 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 31 0.49
86 29 0.46
87 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (85 bp):
TGTAAGACCACGTCTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGACAT
TGGCATCGTATATGATTTCG
Found at i:95812019 original size:43 final size:42
Alignment explanation
Indices: 95811894--95812050 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 42
95811884 TGTGTTATCA
*
95811894 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTGATTTACG
1 TGTAAGACCACGTCTGGGAAG-TGGCATCGATATT-TGATTT-CG
* * *
95811938 TGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTCG
1 TGTAAGACCACGTCTGGGA-AGTGGCATCGATATTTGATTTCG
* * *
95811980 TGTAAGACC-CTGTCTGGGATAGTGGTATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-AGTGGCATCGATATTTGATTTCG
*
95812023 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAG-TGGCAT
95812051 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 28 0.30
43 38 0.40
44 28 0.30
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGAAGTGGCATCGATATTTGATTTCG
Found at i:95818631 original size:38 final size:38
Alignment explanation
Indices: 95818589--95818698 Score: 105
Period size: 41 Copynumber: 2.8 Consensus size: 38
95818579 TCGGATAGTT
*
95818589 CGAAGCAAAGTTGACACCCAGTGTCTCATCG-GCCTAGC
1 CGAAGCAAAG-TGACACCCAGTGTCTCATCGAACCTAGC
* ** * * *
95818627 CGAAGTAAAGTGGTACCCAGTATCTCATCGAATCTATC
1 CGAAGCAAAGTGACACCCAGTGTCTCATCGAACCTAGC
*
95818665 CGAAGTACAATAGTGACACCTAGTGTCTCATCGA
1 CGAAG--CAA-AGTGACACCCAGTGTCTCATCGA
95818699 CTCGAGGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
37 17 0.30
38 18 0.32
40 2 0.04
41 19 0.34
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (38 bp):
CGAAGCAAAGTGACACCCAGTGTCTCATCGAACCTAGC
Done.