Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 291 of 310
Found at i:95818697 original size:41 final size:40
Alignment explanation
Indices: 95818600--95818698 Score: 98
Period size: 38 Copynumber: 2.5 Consensus size: 40
95818590 GAAGCAAAGT
* *
95818600 TGACACCCAGTGTCTCATCG-GCCTAGCCGAAGTAAAGTGG
1 TGACA-CCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTAG
* * *
95818640 T-AC-CCAGTATCTCATCGAATCTATCCGAAGTACAA-TAG
1 TGACACCAGTGTCTCATCGAACCTAGCCGAAGTA-AAGTAG
95818678 TGACACCTAGTGTCTCATCGA
1 TGACACC-AGTGTCTCATCGA
95818699 CTCGAGGTCG
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
37 13 0.27
38 14 0.29
39 6 0.12
40 3 0.06
41 12 0.25
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TGACACCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTAG
Found at i:95823828 original size:28 final size:28
Alignment explanation
Indices: 95823784--95823841 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
95823774 CACCTCACCA
95823784 GACCAATACTCTAGCCGGTTTCTAATCT
1 GACCAATACTCTAGCCGGTTTCTAATCT
*
95823812 GACCAATACTCTGGCCGGTTTCTAATCT
1 GACCAATACTCTAGCCGGTTTCTAATCT
95823840 GA
1 GA
95823842 TTGGTATAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (28 bp):
GACCAATACTCTAGCCGGTTTCTAATCT
Found at i:95825536 original size:31 final size:32
Alignment explanation
Indices: 95825500--95825571 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
95825490 AAGAAAAGAT
*
95825500 AATAGTTCAACT-ACTTAAATAAAAACTTTTG
1 AATAGTTCAACTGACTTAAATAAAAACTTTTA
* * *
95825531 AATAGTTC-AGTGACTTAAATGAAAATTTTTA
1 AATAGTTCAACTGACTTAAATAAAAACTTTTA
*
95825562 AATAATTCAA
1 AATAGTTCAA
95825572 TAACTAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 31 0.91
32 1 0.03
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (32 bp):
AATAGTTCAACTGACTTAAATAAAAACTTTTA
Found at i:95826855 original size:14 final size:14
Alignment explanation
Indices: 95826836--95826866 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
95826826 CTAAAGTCCC
95826836 CACACTTTTGCTCG
1 CACACTTTTGCTCG
95826850 CACACTTTTGCTCG
1 CACACTTTTGCTCG
95826864 CAC
1 CAC
95826867 GGTTGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.39, G:0.13, T:0.32
Consensus pattern (14 bp):
CACACTTTTGCTCG
Found at i:95828037 original size:20 final size:20
Alignment explanation
Indices: 95828012--95828049 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
95828002 CAAAGGCAGC
*
95828012 CATATACCCAAGTTGTTAAG
1 CATATACCCAAGTAGTTAAG
*
95828032 CATATACTCAAGTAGTTA
1 CATATACCCAAGTAGTTA
95828050 CGAAGAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (20 bp):
CATATACCCAAGTAGTTAAG
Found at i:95829705 original size:10 final size:10
Alignment explanation
Indices: 95829687--95829722 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
95829677 ATATAGAAAA
*
95829687 AAATAAATAG
1 AAATGAATAG
95829697 AAATGAATAG
1 AAATGAATAG
95829707 AAATGAATAG
1 AAATGAATAG
95829717 AAATGA
1 AAATGA
95829723 TAAAGTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (10 bp):
AAATGAATAG
Found at i:95830826 original size:56 final size:56
Alignment explanation
Indices: 95830740--95830856 Score: 207
Period size: 56 Copynumber: 2.1 Consensus size: 56
95830730 ACAAGGGATG
95830740 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* * *
95830796 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
95830852 ATGGG
1 ATGGG
95830857 TAATAAAATA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:95832301 original size:40 final size:40
Alignment explanation
Indices: 95832110--95832294 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
95832100 TCGAATGATG
* * * * *
95832110 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
95832150 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
95832190 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
95832229 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
95832270 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
95832295 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 32 0.27
40 78 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95832316 original size:79 final size:79
Alignment explanation
Indices: 95832166--95832327 Score: 186
Period size: 79 Copynumber: 2.1 Consensus size: 79
95832156 CTAAGATCCA
* * **
95832166 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
*
95832231 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * * *
95832245 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
*
95832308 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
95832324 AAGG
1 AAGG
95832328 TACGTGATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.64
80 23 0.33
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:95837505 original size:26 final size:26
Alignment explanation
Indices: 95837468--95837551 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
95837458 TGATACAAAT
* *
95837468 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
95837494 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
95837520 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
95837546 TGATAA
1 TGATAA
95837552 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:95844459 original size:26 final size:26
Alignment explanation
Indices: 95844430--95844537 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
95844420 TGGTACAAAT
95844430 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95844456 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95844482 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95844508 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95844534 TGAT
1 TGAT
95844538 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95846053 original size:26 final size:26
Alignment explanation
Indices: 95846024--95846076 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
95846014 TTTACAGTTT
95846024 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
95846050 TACCTCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
95846076 T
1 T
95846077 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:95848217 original size:26 final size:26
Alignment explanation
Indices: 95848188--95848237 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
95848178 ATTGATAACA
95848188 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
*
95848214 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTCCATGATAA
95848238 GAATTTCATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
GGTTAGGTAAATGTTCCATGATAATG
Found at i:95849120 original size:51 final size:51
Alignment explanation
Indices: 95849059--95849159 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
95849049 GGATAGAAGA
*
95849059 TATATGAGTCTATTTTCAAGGAAAATTAACGGAACTTGATTTGGAGTTTCG
1 TATATAAGTCTATTTTCAAGGAAAATTAACGGAACTTGATTTGGAGTTTCG
* *
95849110 TATATAAGTCTATTTTCAGGGAAAATTAATGGAACTTGATTTGGAGTTTC
1 TATATAAGTCTATTTTCAAGGAAAATTAACGGAACTTGATTTGGAGTTTC
95849160 ATAGCTCCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (51 bp):
TATATAAGTCTATTTTCAAGGAAAATTAACGGAACTTGATTTGGAGTTTCG
Found at i:95860511 original size:6 final size:6
Alignment explanation
Indices: 95860500--95860529 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
95860490 TTTCATTATT
*
95860500 TTTTTC TTTTTC TATTTC TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
95860530 ACATGCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:95868968 original size:27 final size:28
Alignment explanation
Indices: 95868916--95868970 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
95868906 GGAGTAGGGT
95868916 GCCGATGCCATGTCCAGACATGGTCTTA
1 GCCGATGCCATGTCCAGACATGGTCTTA
95868944 GCCGATG-CATGTCCCAGACAT-GTCTTA
1 GCCGATGCCATGT-CCAGACATGGTCTTA
95868971 CACTGGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (28 bp):
GCCGATGCCATGTCCAGACATGGTCTTA
Found at i:95869011 original size:46 final size:45
Alignment explanation
Indices: 95868944--95869114 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 45
95868934 CATGGTCTTA
95868944 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAG
* * *
95868990 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCGAG
* * * * *
95869036 ACCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCGAG
*
95869084 GCCGATGCATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
95869115 AGCTCACAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
46 58 0.55
47 24 0.23
48 23 0.22
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAG
Found at i:95869112 original size:94 final size:92
Alignment explanation
Indices: 95868945--95869117 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 92
95868935 ATGGTCTTAG
* * *
95868945 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAACA
95869010 TGTCTTACACTAGCACTCGTCTCGATA
66 TGTCTTACACTAGCACTCGTCTCGATA
* *
95869037 CCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCA
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCCCA
95869100 AACATGTCTTACACTAGC
62 AACATGTCTTACACTAGC
95869118 TCACAATAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 51 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCACTCGTCTCGATA
Found at i:95870061 original size:85 final size:85
Alignment explanation
Indices: 95869918--95870096 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
95869908 GGCCGGCCAT
95869918 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAATGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAATGCATTAT
95869983 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
95870003 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAATGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAATGCATTAT
95870068 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
95870088 GAGCATGGG
1 GAGCATGGG
95870097 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAATGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:95888474 original size:29 final size:28
Alignment explanation
Indices: 95888438--95888515 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
95888428 TCATGAGATT
95888438 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
95888468 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
95888495 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
95888516 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:95888792 original size:173 final size:174
Alignment explanation
Indices: 95888468--95888794 Score: 548
Period size: 173 Copynumber: 1.9 Consensus size: 174
95888458 AAATTGTACA
* *
95888468 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
95888533 TGTGCGAACCCAATATATATTTTTTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
95888598 TTTTGGACAGCGGAAAAGGTAAGTGTGCGGACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGGACTTGAAATGCATG
* * * *
95888642 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
95888707 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
95888771 TTTTGGACAGTGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
95888795 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
173 78 0.55
174 64 0.45
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGGACTTGAAATGCATG
Found at i:95891770 original size:49 final size:50
Alignment explanation
Indices: 95891713--95891852 Score: 183
Period size: 49 Copynumber: 2.8 Consensus size: 50
95891703 GTAGACAAGG
* * *
95891713 CTATCTGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* *
95891762 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * *
95891812 CCATTTGATACACGTAGTAGCCTGCACTTAATACTACACAC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAC
95891853 ATAACCTCAC
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 42 0.53
50 37 0.47
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:95892123 original size:27 final size:27
Alignment explanation
Indices: 95892084--95892136 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
95892074 GGTACAACCT
* *
95892084 ATGTAATAGTAATTTAACATTCAATTC
1 ATGTAACAATAATTTAACATTCAATTC
**
95892111 ATGTAACAATAATTTGTCATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
95892137 TCACATGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (27 bp):
ATGTAACAATAATTTAACATTCAATTC
Found at i:95905536 original size:29 final size:30
Alignment explanation
Indices: 95905493--95905551 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
95905483 ATTTAATACG
95905493 AACTTTGGCAAAATTACA-TTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
95905522 AACTTTTGCATAATTACACTTTTGCTCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
95905552 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:95913801 original size:46 final size:48
Alignment explanation
Indices: 95913703--95913812 Score: 134
Period size: 46 Copynumber: 2.3 Consensus size: 48
95913693 GTCATGTCCT
* * * * *
95913703 AGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATGTCCT
1 AGACATGTCTTACACTAGCTTATACATCTCAAGGCCGATGCATATCCC
* * *
95913751 AGACATGTCTTACACTAGC-TCT-CATCTCAATGCTGATGCATATCCC
1 AGACATGTCTTACACTAGCTTATACATCTCAAGGCCGATGCATATCCC
95913797 AGACATGTCTTACACT
1 AGACATGTCTTACACT
95913813 TACTTTCGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
46 34 0.63
47 2 0.04
48 18 0.33
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (48 bp):
AGACATGTCTTACACTAGCTTATACATCTCAAGGCCGATGCATATCCC
Found at i:95919813 original size:49 final size:49
Alignment explanation
Indices: 95919736--95919930 Score: 257
Period size: 49 Copynumber: 3.9 Consensus size: 49
95919726 ACTATTGTGA
* *
95919736 GGTCACATGTGTAGTACTAAATGCAGGCTACTACGCGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
95919785 GGTCTCATGTGTAGTACTAATTGCAGGCTACTACGCGTACCTA-AAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC-AGATAATT
* * * *
95919834 GTGATCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTATT
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
95919885 GGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
95919931 GCTTCAGCTA
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
49 83 0.66
50 3 0.02
51 39 0.31
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:95919916 original size:100 final size:101
Alignment explanation
Indices: 95919729--95919925 Score: 288
Period size: 100 Copynumber: 2.0 Consensus size: 101
95919719 CAAATGAACT
* * *
95919729 ATTGTGAGGTCACATGTGTAGTACTAAATGCAGGCTACTACGCGTACCGGATAATTGGTCTCATG
1 ATTGTGA-GTCACATGTGTAGTAATAAATGCAGGCTACTACGCGTACCAGATAATTGGTCACATG
*
95919794 TGTAGTACTAATTGCAGGCTACTACGCGTACCTAAAA
65 TGTAGTACTAAGTGCAGGCTACTACGCGTACCTAAAA
* * * *
95919831 ATTGTGA-TCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGT
1 ATTGTGAGTCACATGTGTAGTAATAAATGCAGGCTACTACGCGTACCAGATAATTGGTCACATGT
* *
95919895 GTAGTACTAAGTGTAGGCTACTATGCGTACC
66 GTAGTACTAAGTGCAGGCTACTACGCGTACC
95919926 AGATAGCTTC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 78 0.92
102 7 0.08
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
ATTGTGAGTCACATGTGTAGTAATAAATGCAGGCTACTACGCGTACCAGATAATTGGTCACATGT
GTAGTACTAAGTGCAGGCTACTACGCGTACCTAAAA
Found at i:95922936 original size:15 final size:15
Alignment explanation
Indices: 95922916--95922967 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
95922906 CTTGGGTTTT
95922916 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
*
95922931 TTTATTCTGGGTTT-
1 TTTATTCTGGATTTC
95922945 TTCTA-TCTTGGATTTC
1 TT-TATTC-TGGATTTC
95922961 TTTATTC
1 TTTATTC
95922968 AGTTTTCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 4 0.13
15 23 0.74
16 4 0.13
ACGTcount: A:0.12, C:0.13, G:0.13, T:0.62
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:95922944 original size:30 final size:30
Alignment explanation
Indices: 95922908--95922967 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
95922898 TATCATATCT
*
95922908 TGGGTTTTTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTTTCTATCT-TGGATTTCTTTATTC
95922938 TGGGTTTTTCTATCTTGGATTTCTTTATTC
1 TGGGTTTTTCTATCTTGGATTTCTTTATTC
95922968 AGTTTTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (30 bp):
TGGGTTTTTCTATCTTGGATTTCTTTATTC
Found at i:95925109 original size:49 final size:51
Alignment explanation
Indices: 95924979--95925120 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 51
95924969 CAGGATAATA
*
95924979 GGTCGCATGTGTAGTACTAAGTGCAGGCTACT-TTGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATT-CGTACCAGAAAACTGT
* * * * **
95925030 GATCACGTGTGTAATACTAAGTGCAGGCTACTACTT-GTACCAGATTA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA-TTCGTACCAGAAAACTGT
* *
95925079 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATACGTACCA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATTCGTACCA
95925121 AATAGCTTCG
Statistics
Matches: 75, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
48 1 0.01
49 35 0.47
50 1 0.01
51 36 0.48
53 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATTCGTACCAGAAAACTGT
Found at i:95927281 original size:26 final size:26
Alignment explanation
Indices: 95927224--95927281 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
95927214 ACAAATTTTC
*
95927224 TCAAAATTTTACTAGCAGTAAAATCG
1 TCAAAATTTTAATAGCAGTAAAATCG
* * *
95927250 TTAAAATTTTAATGAG-GGTAAAATTG
1 TCAAAATTTTAAT-AGCAGTAAAATCG
95927276 TCAAAA
1 TCAAAA
95927282 ACATTACTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTAATAGCAGTAAAATCG
Found at i:95929388 original size:40 final size:39
Alignment explanation
Indices: 95929304--95929488 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
95929294 TTGAATGATG
* * * *
95929304 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
95929344 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
95929384 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
95929423 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
95929464 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
95929489 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95929440 original size:79 final size:81
Alignment explanation
Indices: 95929304--95929486 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
95929294 TTGAATGATG
* *
95929304 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
95929368 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
95929383 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
95929445 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
95929463 ACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
95929487 TGAACGAGGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:95929510 original size:79 final size:79
Alignment explanation
Indices: 95929357--95929521 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
95929347 GGACTAAGAT
* * ** *
95929357 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTGACTAA
*
95929422 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
95929436 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTGA-C
* *
95929499 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
95929515 CCGAAGG
1 CCGAAGG
95929522 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:95932012 original size:48 final size:48
Alignment explanation
Indices: 95931941--95932118 Score: 167
Period size: 48 Copynumber: 3.8 Consensus size: 48
95931931 ACCACAGTTA
95931941 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
* *
95931989 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-ACTGTTGAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-GTTGAT
* * * * * *
95932037 ACGTA-TGCTACTGTAAGACCATATCTGGG--AT---AT-GGCATTGAT
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
* **
95932079 ATGAAATATC-GTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGAGA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
95932119 ATGTGAGGCC
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
41 1 0.01
42 24 0.24
43 3 0.03
44 2 0.02
46 2 0.02
47 3 0.03
48 66 0.65
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
Found at i:95932228 original size:90 final size:89
Alignment explanation
Indices: 95932079--95932246 Score: 205
Period size: 90 Copynumber: 1.9 Consensus size: 89
95932069 TGGCATTGAT
* * * * *
95932079 ATGAAATATCGTGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGCCCCGTATAAGAACATG
1 ATGAAATATCGTGTAAGACCATATATGGGACATGGCATCGATGT-AGGACCCATATAAGAACACG
*
95932144 TCTGGGACATGGCATCAGCGCCGAC
65 TCGGGGACATGGCATCAGCGCCGAC
* * *
95932169 ATGAAACT-TCGTGTAAGACCATATATGGGATATGGCATCGGCATGT-GGACCCATGTAAGACCA
1 ATGAAA-TATCGTGTAAGACCATATATGGGACATGGCATC-G-ATGTAGGACCCATATAAGAACA
95932232 CGTCGGGGACATGGC
63 CGTCGGGGACATGGC
95932247 TTTGGCATTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
90 60 0.91
91 2 0.03
92 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (89 bp):
ATGAAATATCGTGTAAGACCATATATGGGACATGGCATCGATGTAGGACCCATATAAGAACACGT
CGGGGACATGGCATCAGCGCCGAC
Found at i:95934167 original size:47 final size:47
Alignment explanation
Indices: 95934104--95934208 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
95934094 CCCTTCGGGA
* *
95934104 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
95934151 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
95934198 CTTACCACATA
1 CTTATCACATA
95934209 ATTAATACTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:95943440 original size:40 final size:40
Alignment explanation
Indices: 95943389--95944373 Score: 1864
Period size: 40 Copynumber: 24.6 Consensus size: 40
95943379 CATTTGAATG
95943389 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943429 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943469 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943509 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943549 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943589 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943629 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943669 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943709 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943749 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943789 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943829 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943869 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943909 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943949 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95943989 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95944029 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95944069 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95944109 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
95944149 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
95944189 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
95944229 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
95944269 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
95944309 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
95944349 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
95944374 ATTGAGCTTG
Statistics
Matches: 928, Mismatches: 15, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
39 2 0.00
40 925 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:95948765 original size:35 final size:35
Alignment explanation
Indices: 95948641--95948748 Score: 207
Period size: 35 Copynumber: 3.1 Consensus size: 35
95948631 AACGCACTCA
95948641 AATAGACATTTAAGCTTAAATTACACTACTACATT
1 AATAGACATTTAAGCTTAAATTACACTACTACATT
95948676 AATAGACATTTAAGCTTAAATTACACTACTACATT
1 AATAGACATTTAAGCTTAAATTACACTACTACATT
*
95948711 AATAGACATTTAAGCTTAAATTACACTACTAAATT
1 AATAGACATTTAAGCTTAAATTACACTACTACATT
95948746 AAT
1 AAT
95948749 TGAATTCAAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 72 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (35 bp):
AATAGACATTTAAGCTTAAATTACACTACTACATT
Found at i:95948894 original size:6 final size:6
Alignment explanation
Indices: 95948880--95948908 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
95948870 TAAATTAAAA
95948880 TTTAA- TTTAAT TTTAAT TTTAAT TTTAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
95948909 CTATAAGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTAAT
Found at i:95951452 original size:28 final size:28
Alignment explanation
Indices: 95951421--95951486 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
95951411 TATGTATGGT
*
95951421 TAATTTTTATGAGACCTATTTAGATGTG
1 TAATTTTTATGAGAACTATTTAGATGTG
* * *
95951449 TAATTTTTAGGATAATTATTTAGATGTG
1 TAATTTTTATGAGAACTATTTAGATGTG
95951477 T-ATTATTTAT
1 TAATT-TTTAT
95951487 ATTTAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 3 0.09
28 29 0.91
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.52
Consensus pattern (28 bp):
TAATTTTTATGAGAACTATTTAGATGTG
Found at i:95951457 original size:15 final size:16
Alignment explanation
Indices: 95951437--95951485 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
95951427 TTATGAGACC
95951437 TATTTAGATGTGTAAT
1 TATTTAGATGTGTAAT
*
95951453 T-TTTAG--G-ATAAT
1 TATTTAGATGTGTAAT
95951465 TATTTAGATGTGT-AT
1 TATTTAGATGTGTAAT
95951480 TATTTA
1 TATTTA
95951486 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
12 5 0.19
13 6 0.22
15 14 0.52
16 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (16 bp):
TATTTAGATGTGTAAT
Found at i:95951703 original size:19 final size:21
Alignment explanation
Indices: 95951662--95951705 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
95951652 GAAGAAAATA
*
95951662 AAATAGTAACTTTTAAATTGG
1 AAATAGTAACTTTTAAATGGG
*
95951683 AAATA-TAATTTTTAAA-GGG
1 AAATAGTAACTTTTAAATGGG
95951702 AAAT
1 AAAT
95951706 TTATTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (21 bp):
AAATAGTAACTTTTAAATGGG
Found at i:95952269 original size:30 final size:30
Alignment explanation
Indices: 95952233--95952290 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
95952223 CATAAGTATA
*
95952233 ATATATCTGTCTGTTATGGGTCACTCTACG
1 ATATATCTATCTGTTATGGGTCACTCTACG
95952263 ATATATCTATCTGTTATGGGTCACTCTA
1 ATATATCTATCTGTTATGGGTCACTCTA
95952291 ACCTCCAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.41
Consensus pattern (30 bp):
ATATATCTATCTGTTATGGGTCACTCTACG
Found at i:95954873 original size:25 final size:25
Alignment explanation
Indices: 95954845--95954927 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 25
95954835 TACTGATCAG
95954845 GATGCTCGTAGGAACTATATAACAT
1 GATGCTCGTAGGAACTATATAACAT
* * *
95954870 GATGCTTGCAGGAACTATATAACAG
1 GATGCTCGTAGGAACTATATAACAT
*
95954895 GATGCTCG-AGAGAGCT-TATAACAT
1 GATGCTCGTAG-GAACTATATAACAT
*
95954919 GTTGCTCGT
1 GATGCTCGT
95954928 CCGAGCTATA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
24 16 0.33
25 33 0.67
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (25 bp):
GATGCTCGTAGGAACTATATAACAT
Found at i:95958966 original size:9 final size:9
Alignment explanation
Indices: 95958952--95958977 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
95958942 AAGTTTAGTA
95958952 AAAATATGT
1 AAAATATGT
95958961 AAAATATGT
1 AAAATATGT
95958970 AAAATATG
1 AAAATATG
95958978 GGTCACACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.31
Consensus pattern (9 bp):
AAAATATGT
Found at i:95966203 original size:6 final size:6
Alignment explanation
Indices: 95966192--95966311 Score: 150
Period size: 6 Copynumber: 20.0 Consensus size: 6
95966182 AGGCAGAACT
* * * **
95966192 TGAGCC TGAGCC TGAGCC CGAGCC CGAGCC CGAGCC TGAGCC CAAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
* * * *
95966240 CGAGCC CGAGCC CGACCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
*
95966288 TGAGCC TGAGCC TGAGCC CGAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC
95966312 CGAACGGTCG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 105 1.00
ACGTcount: A:0.17, C:0.41, G:0.32, T:0.10
Consensus pattern (6 bp):
TGAGCC
Found at i:95966965 original size:14 final size:14
Alignment explanation
Indices: 95966942--95966976 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
95966932 AAAAATTGGA
*
95966942 ATAAACTTTGTAAT
1 ATAAATTTTGTAAT
*
95966956 ATAAATTTTGTTAT
1 ATAAATTTTGTAAT
95966970 ATAAATT
1 ATAAATT
95966977 AAATACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (14 bp):
ATAAATTTTGTAAT
Found at i:95966979 original size:62 final size:62
Alignment explanation
Indices: 95966854--95967024 Score: 236
Period size: 62 Copynumber: 2.7 Consensus size: 62
95966844 CAACATTACA
* * * * *
95966854 ACATTAAAACACTAAAACTT-TAACAAATTTTGTAATATAAATTTTATTTGTAATATAAATTAAA
1 ACATTACAACACTAAAAATTGGAATAAACTTTGTAATATAAA---T-TTTGTAATATAAATTAAA
95966918 T
62 T
*
95966919 ACATTACAACACTAAAAATTGGAATAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
1 ACATTACAACACTAAAAATTGGAATAAACTTTGTAATATAAATTTTGTAATATAAATTAAAT
*
95966981 ACATTACAACATTAAAAATTGGAATAAACTTTGTAATATAAATT
1 ACATTACAACACTAAAAATTGGAATAAACTTTGTAATATAAATT
95967025 AAATACATTA
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
62 61 0.62
63 1 0.01
65 18 0.18
66 18 0.18
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.37
Consensus pattern (62 bp):
ACATTACAACACTAAAAATTGGAATAAACTTTGTAATATAAATTTTGTAATATAAATTAAAT
Found at i:95966999 original size:24 final size:24
Alignment explanation
Indices: 95966972--95967048 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
95966962 TTTGTTATAT
95966972 AAATTAAATACATTACAACATTAA
1 AAATTAAATACATTACAACATTAA
* * *** *
95966996 AAATTGGAATAAACTTTGTA-A-TAT
1 AAATT-AAATACA-TTACAACATTAA
*
95967020 AAATTAAATACATTACAACCTTAA
1 AAATTAAATACATTACAACATTAA
95967044 AAATT
1 AAATT
95967049 GGAATAAACT
Statistics
Matches: 36, Mismatches: 13, Indels: 8
0.63 0.23 0.14
Matches are distributed among these distances:
22 3 0.08
23 5 0.14
24 19 0.53
25 6 0.17
26 3 0.08
ACGTcount: A:0.53, C:0.10, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATTAAATACATTACAACATTAA
Found at i:95967008 original size:48 final size:48
Alignment explanation
Indices: 95966956--95967072 Score: 198
Period size: 48 Copynumber: 2.4 Consensus size: 48
95966946 ACTTTGTAAT
* *
95966956 ATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGA
1 ATAAACTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGA
*
95967004 ATAAACTTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGA
1 ATAAACTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGA
*
95967052 ATAAACTTCGTAATATAAATT
1 ATAAACTTTGTAATATAAATT
95967073 TTGTTATATA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.36
Consensus pattern (48 bp):
ATAAACTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGA
Found at i:95967038 original size:110 final size:110
Alignment explanation
Indices: 95966900--95967143 Score: 454
Period size: 110 Copynumber: 2.2 Consensus size: 110
95966890 ATAAATTTTA
*
95966900 TTTGTAATATAAATTAAATACATTACAACAC-TAAAAATTGGAATAAACTTTGTAATATAAATTT
1 TTTGTAATATAAATTAAATACATTACAAC-CTTAAAAATTGGAATAAACTTCGTAATATAAATTT
95966964 TGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
65 TGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
95967010 TTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAATATAAATTTT
1 TTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAATATAAATTTT
95967075 GTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
66 GTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
*
95967120 TTTGTAATATAAATTAAGTACATT
1 TTTGTAATATAAATTAAATACATT
95967144 GGACTACATA
Statistics
Matches: 131, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
109 1 0.01
110 130 0.99
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (110 bp):
TTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAATATAAATTTT
GTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
Found at i:95967133 original size:62 final size:62
Alignment explanation
Indices: 95967004--95967134 Score: 226
Period size: 62 Copynumber: 2.1 Consensus size: 62
95966994 AAAAATTGGA
* *
95967004 ATAAACTTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAAT
1 ATAAATTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGAATAAACTTCGTAAT
* *
95967066 ATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAACTTTGTAAT
1 ATAAATTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGAATAAACTTCGTAAT
95967128 ATAAATT
1 ATAAATT
95967135 AAGTACATTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (62 bp):
ATAAATTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGAATAAACTTCGTAAT
Found at i:95970257 original size:14 final size:14
Alignment explanation
Indices: 95970234--95970277 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
95970224 ATAATAATAC
*
95970234 CTTTTATTTCTTCT
1 CTTTTCTTTCTTCT
*
95970248 CTTTTCTTTCCTCT
1 CTTTTCTTTCTTCT
95970262 CTTTTCTTTCTT-T
1 CTTTTCTTTCTTCT
95970275 CTT
1 CTT
95970278 CTCCTCTCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 4 0.15
14 23 0.85
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.70
Consensus pattern (14 bp):
CTTTTCTTTCTTCT
Found at i:95970282 original size:23 final size:24
Alignment explanation
Indices: 95970240--95970285 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
95970230 ATACCTTTTA
95970240 TTTCTTCTCTTTTCTTTCCTCTCT
1 TTTCTTCTCTTTTCTTTCCTCTCT
95970264 TTTCTT-TC-TTTCTTCTCCTCTC
1 TTTCTTCTCTTTTCTT-TCCTCTC
95970286 CCTCTCTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTCTTCTCTTTTCTTTCCTCTCT
Found at i:95979774 original size:39 final size:38
Alignment explanation
Indices: 95979727--95979989 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 38
95979717 TGTGTGAGAT
*
95979727 TTATATCCGGGCTAAGTACCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
**
95979766 TTATATCCGTTCTAAGTCCGAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCG-AAGGCATTCGTGCTGGTG
* *
95979805 TTATGTCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCC-GAAGGCATTCGTGCTGGTG
* * *
95979844 TTATATCCGGGCTCAGTCCCGAAGGTATTCGTGCTAGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
* * *
95979883 TTATATCTGGGCTAAGTCCGGAAGGTATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCC-GAAGGCATTCGTGCTGGTG
* * *
95979922 TTATATCTGGGCTAAGTCCCGAAGGTATTCGTGCTAGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
*
95979961 TTATATCCGGGCTCAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGT-CCGAAGGCATT
95979990 TGTGTTGGAA
Statistics
Matches: 198, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
38 5 0.03
39 188 0.95
40 5 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (38 bp):
TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
Found at i:95979862 original size:78 final size:78
Alignment explanation
Indices: 95979727--95979989 Score: 377
Period size: 78 Copynumber: 3.4 Consensus size: 78
95979717 TGTGTGAGAT
**
95979727 TTATATCCGGGCTAAGTACC-GAAGGCATTCATGCTGGTGTTATATCCGTTCTAAGT-CCGAAAG
1 TTATATCCGGGCTAAGT-CCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCG-AAG
* *
95979790 GCATTCGTGCTGGTG
64 GTATTCGTGCTAGTG
* *
95979805 TTATGTCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTCAGTCCCGAAGGT
1 TTATATCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGT
95979870 ATTCGTGCTAGTG
66 ATTCGTGCTAGTG
* * * * *
95979883 TTATATCTGGGCTAAGTCCGGAAGGTATTCGTACTGGTGTTATATCTGGGCTAAGTCCCGAAGGT
1 TTATATCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGT
95979948 ATTCGTGCTAGTG
66 ATTCGTGCTAGTG
* *
95979961 TTATATCCGGGCTCAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCGGAAGGCATT
95979990 TGTGTTGGAA
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 2 0.01
78 161 0.97
79 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (78 bp):
TTATATCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGT
ATTCGTGCTAGTG
Found at i:95979934 original size:117 final size:117
Alignment explanation
Indices: 95979727--95979989 Score: 373
Period size: 117 Copynumber: 2.2 Consensus size: 117
95979717 TGTGTGAGAT
* * * **
95979727 TTATATCCGGGCTAAGTACCGAAGGCATTCATGCTGGTGTTATATCCGTTCTAAGTCCGAAAGGC
1 TTATATCCGGGCTCAGTCCCGAAGGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCGAAAGGC
* * * *
95979792 ATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTG
66 ATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTG
* * * * *
95979844 TTATATCCGGGCTCAGTCCCGAAGGTATTCGTGCTAGTGTTATATCTGGGCTAAGTCCGGAAGGT
1 TTATATCCGGGCTCAGTCCCGAAGGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCGAAAGGC
* * *
95979909 ATTCGTACTGGTGTTATATCTGGGCTAAGTCCCGAAGGTATTCGTGCTAGTG
66 ATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTG
95979961 TTATATCCGGGCTCAGTCCCGAAGGCATT
1 TTATATCCGGGCTCAGTCCCGAAGGCATT
95979990 TGTGTTGGAA
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 128 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (117 bp):
TTATATCCGGGCTCAGTCCCGAAGGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCGAAAGGC
ATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTG
Found at i:95987905 original size:39 final size:39
Alignment explanation
Indices: 95987860--95988083 Score: 304
Period size: 39 Copynumber: 5.7 Consensus size: 39
95987850 TGTGTGAGAT
*
95987860 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
95987899 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * **
95987938 TTATGTCCGAGCTAAGTTTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
95987977 TTATATCCAGGCTAAATCTCGAAGGTATGCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
95988016 TTATATCCCGGCTATGTCCCGCAGGTATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
95988055 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
95988084 TGTGTTGGAA
Statistics
Matches: 162, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 162 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:95988252 original size:18 final size:18
Alignment explanation
Indices: 95988229--95988263 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
95988219 TCTTCCGGCC
95988229 ATTGCTTAAGGTTGTATT
1 ATTGCTTAAGGTTGTATT
*
95988247 ATTGCTTAGGGTTGTAT
1 ATTGCTTAAGGTTGTAT
95988264 GAAGTCTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.06, G:0.26, T:0.49
Consensus pattern (18 bp):
ATTGCTTAAGGTTGTATT
Found at i:95992975 original size:7 final size:7
Alignment explanation
Indices: 95992965--95993006 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
95992955 GGGGAATAGG
95992965 GAAGGGA
1 GAAGGGA
95992972 GAAGGGA
1 GAAGGGA
*
95992979 GAAGGAA
1 GAAGGGA
*
95992986 GAATGGA
1 GAAGGGA
95992993 GAAGGGA
1 GAAGGGA
95993000 GAAGGGA
1 GAAGGGA
95993007 ACATAAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.52, T:0.02
Consensus pattern (7 bp):
GAAGGGA
Found at i:95995814 original size:10 final size:10
Alignment explanation
Indices: 95995799--95995823 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
95995789 TAATGAAAGT
95995799 TTAAACAAAA
1 TTAAACAAAA
95995809 TTAAACAAAA
1 TTAAACAAAA
95995819 TTAAA
1 TTAAA
95995824 GAATGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAACAAAA
Found at i:95998137 original size:3 final size:3
Alignment explanation
Indices: 95998131--95998177 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
95998121 CCTCATCCCT
* * *
95998131 TTC TTC TTC TTT TTC TTC TTC GTC -TC GTC TTC TTC TCTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC
95998176 TT
1 TT
95998178 TTATTGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.00, C:0.32, G:0.04, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:96001030 original size:20 final size:21
Alignment explanation
Indices: 96000987--96001031 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
96000977 ATATTTTGAA
*
96000987 TTTTAAATATTATTTTTCATT
1 TTTTAAATATTATTTTTAATT
96001008 TTTTAAA-ATT-TTTTTAAATT
1 TTTTAAATATTATTTTT-AATT
96001028 TTTT
1 TTTT
96001032 TGGTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTAAATATTATTTTTAATT
Found at i:96001392 original size:19 final size:19
Alignment explanation
Indices: 96001370--96001412 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
96001360 ATACACCTCA
* *
96001370 TGTGCCAGGATCCACTTCG
1 TGTGCCAGGATACAATTCG
* *
96001389 TGTGTCAGTATACAATTCG
1 TGTGCCAGGATACAATTCG
96001408 TGTGC
1 TGTGC
96001413 TAAGATGTGC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.33
Consensus pattern (19 bp):
TGTGCCAGGATACAATTCG
Found at i:96003640 original size:15 final size:15
Alignment explanation
Indices: 96003620--96003651 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
96003610 AATCCTGTAG
*
96003620 AAATTAAATATAACT
1 AAATTAAATAAAACT
96003635 AAATTAAATAAAACT
1 AAATTAAATAAAACT
96003650 AA
1 AA
96003652 TGGAAGTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATTAAATAAAACT
Found at i:96006853 original size:35 final size:35
Alignment explanation
Indices: 96006807--96006887 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
96006797 ACTCTATGTT
** * *
96006807 TTGGTGTGTTTTAGTTGGATTAGGTTTTATGAGCA
1 TTGGTGTGTTTTAGAGGGATTAGCTCTTATGAGCA
*
96006842 TTGGTGTGTTTTGGAGGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTTAGAGGGATTAGCTCTTATGAGCA
96006877 TTGGTGTGTTT
1 TTGGTGTGTTT
96006888 GGGTGGTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.15, C:0.05, G:0.33, T:0.47
Consensus pattern (35 bp):
TTGGTGTGTTTTAGAGGGATTAGCTCTTATGAGCA
Found at i:96008358 original size:18 final size:18
Alignment explanation
Indices: 96008325--96008359 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
96008315 TTAATATATA
96008325 TATAGGTTATAAAATAAT
1 TATAGGTTATAAAATAAT
96008343 TATA-GTTATAATAATAA
1 TATAGGTTATAA-AATAA
96008360 ATACAAAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (18 bp):
TATAGGTTATAAAATAAT
Found at i:96008414 original size:18 final size:19
Alignment explanation
Indices: 96008393--96008429 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
96008383 CATGCAATTT
*
96008393 AGAAATAAAAGA-AAAGAA
1 AGAAAGAAAAGAGAAAGAA
96008411 AGAAAGAAAAGAGAAAGAA
1 AGAAAGAAAAGAGAAAGAA
96008430 GAACGCACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (19 bp):
AGAAAGAAAAGAGAAAGAA
Found at i:96010440 original size:34 final size:34
Alignment explanation
Indices: 96010397--96010464 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
96010387 AGAAAAGAAG
96010397 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
1 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
96010431 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
1 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
96010465 CCTCAAATCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (34 bp):
AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
Found at i:96013306 original size:16 final size:16
Alignment explanation
Indices: 96013265--96013300 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
96013255 GTCTTATTTC
*
96013265 ATTTTTAT-TTGTTTT
1 ATTTTTATCTTTTTTT
96013280 ATTTTTATCTTTTTTT
1 ATTTTTATCTTTTTTT
96013296 ATTTT
1 ATTTT
96013301 ATTCTTGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (16 bp):
ATTTTTATCTTTTTTT
Found at i:96016579 original size:30 final size:30
Alignment explanation
Indices: 96016521--96016579 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
96016511 ATTTTTGGGC
* **
96016521 CTAGGGGTAAAATGATCATTTTGTCAAAGT
1 CTAGGGGCAAAATGATCATTTTACCAAAGT
*
96016551 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGATCATTTTACCAAAG
96016580 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGATCATTTTACCAAAGT
Found at i:96017060 original size:46 final size:45
Alignment explanation
Indices: 96016908--96017129 Score: 211
Period size: 46 Copynumber: 4.8 Consensus size: 45
96016898 TCATTTGTGT
* * *
96016908 GAGCTAGTGTAAGACATGTCTGGGACATGCGTCGGCT-GCATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCG-A-GACGA
* *
96016954 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGACGA
* * * *
96017002 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGACG-A
96017049 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-A--A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGACGA
* *
96017091 TGTGTCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
96017130 ATAGATATGC
Statistics
Matches: 150, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
42 1 0.01
44 12 0.08
45 16 0.11
46 67 0.45
47 28 0.19
48 23 0.15
49 2 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGA
Found at i:96022400 original size:30 final size:30
Alignment explanation
Indices: 96022366--96022422 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
96022356 CATTTAATAC
96022366 AAACTTTGGAAAAATTAAACTTTTGCCCCT
1 AAACTTTGGAAAAATTAAACTTTTGCCCCT
* * * *
96022396 AAACTTTTGCATAATTACACTTTTGCC
1 AAACTTTGGAAAAATTAAACTTTTGCC
96022423 ATTAGGCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (30 bp):
AAACTTTGGAAAAATTAAACTTTTGCCCCT
Found at i:96023456 original size:40 final size:40
Alignment explanation
Indices: 96023399--96023482 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
96023389 GAAAGCATGA
96023399 GATGGCATAAAACGTTGCCTTAAATGGAACCTATGGCATT
1 GATGGCATAAAACGTTGCCTTAAATGGAACCTATGGCATT
*
96023439 GATGGCATAAAATGTTGCCTTAAATGGAACCTATGGCATT
1 GATGGCATAAAACGTTGCCTTAAATGGAACCTATGGCATT
96023479 GATG
1 GATG
96023483 ATGCAGTTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (40 bp):
GATGGCATAAAACGTTGCCTTAAATGGAACCTATGGCATT
Found at i:96024982 original size:6 final size:6
Alignment explanation
Indices: 96024968--96025029 Score: 70
Period size: 6 Copynumber: 10.3 Consensus size: 6
96024958 AAATGATTAG
* * * * *
96024968 ATTACA ATTATA ATTATA ATAATA ATAATA ATTATT ATTATT ATTATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA
*
96025016 ATTATA ATTGTA AT
1 ATTATA ATTATA AT
96025030 CTAATCATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (6 bp):
ATTATA
Found at i:96025010 original size:9 final size:9
Alignment explanation
Indices: 96024974--96025020 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
96024964 TTAGATTACA
96024974 ATTATAATT
1 ATTATAATT
* *
96024983 ATAATAATA
1 ATTATAATT
*
96024992 ATAATAATT
1 ATTATAATT
*
96025001 ATTATTATT
1 ATTATAATT
96025010 ATTATAATT
1 ATTATAATT
96025019 AT
1 AT
96025021 AATTGTAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
ATTATAATT
Found at i:96026728 original size:15 final size:15
Alignment explanation
Indices: 96026710--96026743 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
96026700 TGGAGGGAAA
96026710 AAAATTCTTAAATGT
1 AAAATTCTTAAATGT
96026725 AAAATTCTTAAATGT
1 AAAATTCTTAAATGT
96026740 AAAA
1 AAAA
96026744 GAACTAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (15 bp):
AAAATTCTTAAATGT
Found at i:96028180 original size:9 final size:9
Alignment explanation
Indices: 96028166--96028205 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
96028156 GGAAAGGGAG
*
96028166 GGTGGTAGT
1 GGTGGTAGA
*
96028175 GGTGGTGGA
1 GGTGGTAGA
96028184 GGTGGTAGA
1 GGTGGTAGA
*
96028193 GGTGGCAGA
1 GGTGGTAGA
96028202 GGTG
1 GGTG
96028206 TTTGTATTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.15, C:0.03, G:0.60, T:0.23
Consensus pattern (9 bp):
GGTGGTAGA
Found at i:96042964 original size:87 final size:85
Alignment explanation
Indices: 96042715--96043603 Score: 1018
Period size: 87 Copynumber: 10.3 Consensus size: 85
96042705 AGCCTTATCT
* *
96042715 CCCTAAGCAGTAGGGTAATAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAAA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTT-CAGATCTTAA-CCCCTAAGCAGTAGGGAAACAGA
* * *
96042780 TCGAAGATGAAGGGTCTTAAAA
64 TCGAAGACGAAGGGCCTTAAAC
* ** * * *
96042802 CCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTCAGATCTTAAC-CCCTAAGCAGTAG-GGAAACAGA
*
96042866 TCGAAGGCGAAGGGCCTTAAAC
64 TCGAAGACGAAGGGCCTTAAAC
**
96042888 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTC-AGATCTTAACCCC-TAAGCAGTAGGGAAACAGA
* *
96042953 TCGAAGACGAAGGGTCTTAAAA
64 TCGAAGACGAAGGGCCTTAAAC
* ** * * *
96042975 CCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTCAGATCTTAAC-CCCTAAGCAGTAG-GGAAACAGA
*
96043039 TCGAAGGCGAAGGGCCTTAAAC
64 TCGAAGACGAAGGGCCTTAAAC
**
96043061 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTC-AGATCTTAACCCC-TAAGCAGTAGGGAAACAGA
* *
96043126 TCGAAGACGAAGGGTCTTAAAA
64 TCGAAGACGAAGGGCCTTAAAC
* ** * * *
96043148 CCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTCAGATCTTAAC-CCCTAAGCAGTAG-GGAAACAGA
*
96043212 TCGAAGGCGAAGGGCCTTAAAC
64 TCGAAGACGAAGGGCCTTAAAC
**
96043234 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTC-AGATCTTAACCCC-TAAGCAGTAGGGAAACAGA
* *
96043299 TCGAAGACGAAGGGTCTTAAAA
64 TCGAAGACGAAGGGCCTTAAAC
* ** * *
96043321 CCCTAAGCAGTAGGGTAACAGACCAAATTGT-AAATCTTAACCCCCTAAGCAGTAAGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATT-TCAGATCTTAA-CCCCTAAGCAGTAGGGAAACAGA
* *
96043385 TCAAAGACGATGGGCCTTAAAC
64 TCGAAGACGAAGGGCCTTAAAC
*
96043407 CCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAAGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTT-CAGATCTTAA-CCCCTAAGCAGTAGGGAAACAGA
**
96043472 TCGAAGGTGAAGGG-CTTCAAAC
64 TCGAAGACGAAGGGCCTT-AAAC
* * * * *
96043494 CCCTAAGTAGTAGGGTAACGGGCTGGATTTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTT-CAGATCTTAAC-CCCTAAGCAGTAG-GGAAACAG
* * * *
96043558 ATCAAAGACGATGAGCCTT-GAC
63 ATCGAAGACGAAGGGCCTTAAAC
96043580 CCCTAAGCAGTAGGGTAACAGGCT
1 CCCTAAGCAGTAGGGTAACAGGCT
96043604 AAAAATTATA
Statistics
Matches: 678, Mismatches: 101, Indels: 47
0.82 0.12 0.06
Matches are distributed among these distances:
85 2 0.00
86 318 0.47
87 352 0.52
88 6 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (85 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAATTTCAGATCTTAACCCCTAAGCAGTAGGGAAACAGATC
GAAGACGAAGGGCCTTAAAC
Found at i:96043004 original size:173 final size:173
Alignment explanation
Indices: 96042715--96043603 Score: 1381
Period size: 173 Copynumber: 5.1 Consensus size: 173
96042705 AGCCTTATCT
** * * *
96042715 CCCTAAGCAGTAGGGTAATAGGCTGAATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAA
1 CCCTAAGCAGTAGGACAACAGGCTGAATTT-CTAGATCTTAACCCCATAAGCAGTAGGGAAACAG
*
96042779 ATCGAAGATGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCT
65 ATCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCT
96042844 CCCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
130 CCCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
96042888 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
96042953 TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
66 TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
96043018 CCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
131 CCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
96043061 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
96043126 TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
66 TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
96043191 CCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
131 CCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
96043234 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
* * * *
96043299 TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGTAAATCTTAACCC
66 TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
* * * * *
96043364 CCTAAGCAGTAAG-GAAACAGATCAAAGACGATGGGCCTTAAAC
131 CCTAAGCAGT-AGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
** * * *
96043407 CCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAAGGAAACAGA
1 CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
** * * * * ** * *
96043472 TCGAAGGTGAAGGG-CTTCAAACCCCTAAGTAGTAGGGTAACGGGCTGGATTTACAGATCTTATC
66 TCGAAGACGAAGGGTCTT-AAAACCCTAAGCAGTAGGGTAACAGAC-CAAATTGCAGATCTTATC
* * * * *
96043536 TCCCTAAGCAGTAGTGGAGCAGATCAAAGACGATGAGCCTT-GAC
129 TCCCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
**
96043580 CCCTAAGCAGTAGGGTAACAGGCT
1 CCCTAAGCAGTAGGACAACAGGCT
96043604 AAAAATTATA
Statistics
Matches: 673, Mismatches: 38, Indels: 10
0.93 0.05 0.01
Matches are distributed among these distances:
172 4 0.01
173 622 0.92
174 47 0.07
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (173 bp):
CCCTAAGCAGTAGGACAACAGGCTGAATTTCTAGATCTTAACCCCATAAGCAGTAGGGAAACAGA
TCGAAGACGAAGGGTCTTAAAACCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
CCTAAGCAGTAGTGGAGCAGATCGAAGGCGAAGGGCCTTAAAC
Found at i:96053370 original size:45 final size:45
Alignment explanation
Indices: 96053320--96053418 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 45
96053310 GCAAAAATTG
96053320 GTGGCGTTTATTTAAAAAAAATG-CCGCTAAAAGCCATGACTTTTA
1 GTGGCGTTT-TTTAAAAAAAATGACCGCTAAAAGCCATGACTTTTA
* * *
96053365 GTGGCG---TTTGAAAAAAATGCACCGCTAAAAGTCATGGCTTTTA
1 GTGGCGTTTTTTAAAAAAAATG-ACCGCTAAAAGCCATGACTTTTA
*
96053408 GCGGCGTTTTT
1 GTGGCGTTTTT
96053419 CCCACAAACG
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
41 12 0.27
43 25 0.56
45 6 0.13
46 2 0.04
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (45 bp):
GTGGCGTTTTTTAAAAAAAATGACCGCTAAAAGCCATGACTTTTA
Found at i:96053383 original size:41 final size:42
Alignment explanation
Indices: 96053334--96053416 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 42
96053324 CGTTTATTTA
*
96053334 AAAAAAATG-CCGCTAAAAGCCATGACTTTTAGTGGCGTTTG
1 AAAAAAATGACCGCTAAAAGCCATGACTTTTAGCGGCGTTTG
* *
96053375 AAAAAAATGCACCGCTAAAAGTCATGGCTTTTAGCGGCGTTT
1 AAAAAAATG-ACCGCTAAAAGCCATGACTTTTAGCGGCGTTT
96053417 TTCCCACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 9 0.24
43 28 0.76
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (42 bp):
AAAAAAATGACCGCTAAAAGCCATGACTTTTAGCGGCGTTTG
Found at i:96053523 original size:31 final size:31
Alignment explanation
Indices: 96053488--96053554 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
96053478 CTTCCTACAT
*
96053488 TAAAATCCAACCAAATACAACAAATATAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
** * *
96053519 TAAAATGTAGCCAAAAACAACAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
96053550 TAAAA
1 TAAAA
96053555 AAATACAACC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.18, G:0.06, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:96053567 original size:34 final size:31
Alignment explanation
Indices: 96053488--96053571 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
96053478 CTTCCTACAT
* *
96053488 TAAAATCCAACCAAATACAACAAATATAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
** * *
96053519 TAAAATGTAGCCAAAAACAACAAATTTAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
96053550 TAAAAAAATACAACCAAAAACA
1 T---AAAATACAACCAAAAACA
96053572 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
31 27 0.64
34 15 0.36
ACGTcount: A:0.61, C:0.19, G:0.05, T:0.15
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAGCA
Found at i:96054276 original size:13 final size:14
Alignment explanation
Indices: 96054251--96054279 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96054241 TGATGAATTG
96054251 AATTAAACAATTAT
1 AATTAAACAATTAT
96054265 AATTAAAC-ATTAT
1 AATTAAACAATTAT
96054278 AA
1 AA
96054280 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:96059398 original size:9 final size:9
Alignment explanation
Indices: 96059373--96059458 Score: 68
Period size: 9 Copynumber: 9.6 Consensus size: 9
96059363 TATTTATGTA
96059373 TTATGTAAG
1 TTATGTAAG
*
96059382 TTAAGTAAG
1 TTATGTAAG
96059391 CTT-TGTAAG
1 -TTATGTAAG
96059400 TTATGTAAG
1 TTATGTAAG
* *
96059409 TTACGTTA-
1 TTATGTAAG
* * *
96059417 TGATATACAT
1 TTATGTA-AG
*
96059427 TTATATAAG
1 TTATGTAAG
*
96059436 GTATGTAAG
1 TTATGTAAG
96059445 TTATGTAAG
1 TTATGTAAG
96059454 TTATG
1 TTATG
96059459 ATATGATATA
Statistics
Matches: 60, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
8 5 0.08
9 47 0.78
10 8 0.13
ACGTcount: A:0.34, C:0.03, G:0.20, T:0.43
Consensus pattern (9 bp):
TTATGTAAG
Found at i:96059478 original size:13 final size:13
Alignment explanation
Indices: 96059460--96059489 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
96059450 TAAGTTATGA
96059460 TATGATATATATT
1 TATGATATATATT
96059473 TATGATATATATT
1 TATGATATATATT
96059486 TATG
1 TATG
96059490 TATTATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:96059930 original size:3 final size:3
Alignment explanation
Indices: 96059922--96059954 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
96059912 ATCAACAAAC
96059922 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
96059955 TATTATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:96060433 original size:50 final size:51
Alignment explanation
Indices: 96060357--96060463 Score: 137
Period size: 50 Copynumber: 2.1 Consensus size: 51
96060347 TAACATAACG
* * *
96060357 TATAAATGTTACGAGTTAAATTTGTTAAATTATGA-CTAAATTGACAGAATA
1 TATAAATATTACGAGTTAAATTTGTTAAATCAAGATC-AAATTGACAGAATA
* * *
96060408 TATAAATATTATGA-TTTAATTTGTTAAATCAAGATCAAATTGATAGAATA
1 TATAAATATTACGAGTTAAATTTGTTAAATCAAGATCAAATTGACAGAATA
96060458 TATAAA
1 TATAAA
96060464 CTTAAGATCT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
50 36 0.73
51 13 0.27
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (51 bp):
TATAAATATTACGAGTTAAATTTGTTAAATCAAGATCAAATTGACAGAATA
Found at i:96062497 original size:19 final size:16
Alignment explanation
Indices: 96062457--96062489 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
96062447 TTGAGTGCTG
96062457 AGCATTAACAACAGAA
1 AGCATTAACAACAGAA
96062473 AGCATTAACAACAGAA
1 AGCATTAACAACAGAA
96062489 A
1 A
96062490 TCTGCATTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.18, G:0.12, T:0.12
Consensus pattern (16 bp):
AGCATTAACAACAGAA
Found at i:96062989 original size:84 final size:84
Alignment explanation
Indices: 96062848--96063208 Score: 659
Period size: 84 Copynumber: 4.3 Consensus size: 84
96062838 GTTTTTTTGC
* * * * *
96062848 GGCGTTTCTAGGATAGCGCCACTAATTCCTAAACCGTGCCACATAAAACGACGTAGTTTTCATTC
1 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
96062913 GGTTTCTCATATTCTTAGT
66 GGTTTCTCATATTCTTAGT
96062932 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
1 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
96062997 GGTTTCTCATATTCTTAGT
66 GGTTTCTCATATTCTTAGT
96063016 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
1 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
96063081 GGTTTCTCATATTCTTAGT
66 GGTTTCTCATATTCTTAGT
96063100 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
1 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
*
96063165 GGTTTCTCATATTTTTAGT
66 GGTTTCTCATATTCTTAGT
*
96063184 GGCGTTTATAAGATAGCGCCACTAA
1 GGCGTTTATACGATAGCGCCACTAA
96063209 ATCCACTACC
Statistics
Matches: 270, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 270 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (84 bp):
GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
GGTTTCTCATATTCTTAGT
Found at i:96063126 original size:168 final size:168
Alignment explanation
Indices: 96062848--96063275 Score: 659
Period size: 168 Copynumber: 2.6 Consensus size: 168
96062838 GTTTTTTTGC
* * *
96062848 GGCGTTTCTAGGATAGCGCCACTAATTCCTAAACCGTGCCACATAAAACGACGTAGTTTTCATTC
1 GGCGTTTATAAGATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTCATTC
96062913 GGTTTCTCATATTCTTAGTGGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAA
66 GGTTTCTCATATTCTTAGTGGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAA
96062978 AATGACGTAGTTTTCATTCGGTTTCTCATATTCTTAGT
131 AATGACGTAGTTTTCATTCGGTTTCTCATATTCTTAGT
* * *
96063016 GGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAAAATGACGTAGTTTTCATTC
1 GGCGTTTATAAGATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTCATTC
96063081 GGTTTCTCATATTCTTAGTGGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAA
66 GGTTTCTCATATTCTTAGTGGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAA
*
96063146 AATGACGTAGTTTTCATTCGGTTTCTCATATTTTTAGT
131 AATGACGTAGTTTTCATTCGGTTTCTCATATTCTTAGT
* * * *
96063184 GGCGTTTATAAGATAGCGCCACTAAATCC-ACTACC-CGCGAAATAAAACGACG-ACG-TTTCAA
1 GGCGTTTATAAGATAGCGCCACTAATTCCTA-AACCGCGCCACATAAAACGACGTA-GTTTTC-A
* **
96063245 TACAATTTCTCATACTT-TTAGTGGCGTTTAT
63 TTCGGTTTCTCATA-TTCTTAGTGGCGTTTAT
96063276 GACCTAGTGC
Statistics
Matches: 240, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
166 5 0.02
167 42 0.17
168 193 0.80
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (168 bp):
GGCGTTTATAAGATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTCATTC
GGTTTCTCATATTCTTAGTGGCGTTTATACGATAGCGCCACTAATTCCTAAATCGCGCCACATAA
AATGACGTAGTTTTCATTCGGTTTCTCATATTCTTAGT
Found at i:96063551 original size:15 final size:15
Alignment explanation
Indices: 96063531--96063575 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
96063521 AAGCCCAAAA
96063531 CCAATACACTAAACC
1 CCAATACACTAAACC
*
96063546 CCAATACCCTAAA-C
1 CCAATACACTAAACC
* *
96063560 CCTATAGACTAAACC
1 CCAATACACTAAACC
96063575 C
1 C
96063576 TAAACCCAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (15 bp):
CCAATACACTAAACC
Found at i:96063563 original size:7 final size:7
Alignment explanation
Indices: 96063539--96063637 Score: 53
Period size: 7 Copynumber: 14.0 Consensus size: 7
96063529 AACCAATACA
96063539 CTAAACC
1 CTAAACC
*
96063546 CCAATACC
1 CTAA-ACC
96063554 CTAAACC
1 CTAAACC
* **
96063561 CTATAGA
1 CTAAACC
96063568 CTAAACC
1 CTAAACC
96063575 CTAAACC
1 CTAAACC
96063582 C-AATACC
1 CTAA-ACC
96063589 C-AATACC
1 CTAA-ACC
96063596 CTAAACC
1 CTAAACC
* *
96063603 TTATAA-A
1 CTA-AACC
**
96063610 CTAAATT
1 CTAAACC
96063617 CTAAACC
1 CTAAACC
96063624 C-AATACC
1 CTAA-ACC
96063631 CTAAACC
1 CTAAACC
96063638 TTGAACTTAA
Statistics
Matches: 71, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
6 6 0.08
7 53 0.75
8 12 0.17
ACGTcount: A:0.43, C:0.36, G:0.01, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:96063577 original size:21 final size:20
Alignment explanation
Indices: 96063551--96063624 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
96063541 AAACCCCAAT
96063551 ACCCTAAACCCTATAGACTAA
1 ACCCTAAACCCTATA-ACTAA
* * *
96063572 ACCCTAAACCCAATACCCAA
1 ACCCTAAACCCTATAACTAA
*
96063592 TACCCTAAACCTTATAAACTAA
1 -ACCCTAAACCCTAT-AACTAA
**
96063614 ATTCTAAACCC
1 ACCCTAAACCC
96063625 AATACCCTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 3 0.07
21 34 0.83
22 4 0.10
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.20
Consensus pattern (20 bp):
ACCCTAAACCCTATAACTAA
Found at i:96063589 original size:14 final size:14
Alignment explanation
Indices: 96063531--96063602 Score: 67
Period size: 14 Copynumber: 5.1 Consensus size: 14
96063521 AAGCCCAAAA
*
96063531 CCAATACACTAAACC
1 CCAATACCCTAAA-C
96063546 CCAATACCCTAAAC
1 CCAATACCCTAAAC
* **
96063560 CCTATAGACTAAAC
1 CCAATACCCTAAAC
96063574 CCTAA-ACCC-AATAC
1 CC-AATACCCTAA-AC
96063588 CCAATACCCTAAAC
1 CCAATACCCTAAAC
96063602 C
1 C
96063603 TTATAAACTA
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
13 4 0.09
14 27 0.59
15 15 0.33
ACGTcount: A:0.43, C:0.40, G:0.01, T:0.15
Consensus pattern (14 bp):
CCAATACCCTAAAC
Found at i:96063592 original size:42 final size:42
Alignment explanation
Indices: 96063545--96063631 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
96063535 TACACTAAAC
*
96063545 CCCAATACCCTAAACCCTATAGACTAAACCCTAAACCCAATA
1 CCCAATACCCTAAACCCTATAAACTAAACCCTAAACCCAATA
* **
96063587 CCCAATACCCTAAACCTTATAAACTAAATTCTAAACCCAATA
1 CCCAATACCCTAAACCCTATAAACTAAACCCTAAACCCAATA
96063629 CCC
1 CCC
96063632 TAAACCTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.43, C:0.37, G:0.01, T:0.20
Consensus pattern (42 bp):
CCCAATACCCTAAACCCTATAAACTAAACCCTAAACCCAATA
Found at i:96064103 original size:22 final size:22
Alignment explanation
Indices: 96064075--96064128 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
96064065 AAAATTTATT
* *
96064075 TTTAAGATTTTAGGGTTTAT-G
1 TTTAAGAGTTTAGGGCTTATAG
96064096 ATTTAAGAGTTTAGGGCTTATAG
1 -TTTAAGAGTTTAGGGCTTATAG
96064119 TTTAAG-GTTT
1 TTTAAGAGTTT
96064129 GAGATTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 4 0.14
22 24 0.83
23 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.24, T:0.48
Consensus pattern (22 bp):
TTTAAGAGTTTAGGGCTTATAG
Found at i:96064899 original size:38 final size:37
Alignment explanation
Indices: 96064830--96064907 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 37
96064820 AATACTCAAT
* * *
96064830 CTATTGCGGCGTTTTTTACAAAGCGCTGCTAATGCCA
1 CTATTGCGGCGTTTTTGACAAAACGCCGCTAATGCCA
96064867 CTATTAGCGGCGCTTTTTGA-AAAACGCCGCTAATGCCA
1 CTATT-GCGGCG-TTTTTGACAAAACGCCGCTAATGCCA
96064905 CTA
1 CTA
96064908 AATCTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 5 0.14
38 25 0.69
39 6 0.17
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (37 bp):
CTATTGCGGCGTTTTTGACAAAACGCCGCTAATGCCA
Found at i:96066042 original size:25 final size:25
Alignment explanation
Indices: 96066006--96066061 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
96065996 ATAATTTGAT
96066006 TAAA-ACTAAATTAATTAATGGAAC
1 TAAATACTAAATTAATTAATGGAAC
* * *
96066030 TAAATACTAAATTAATTGATTGAAT
1 TAAATACTAAATTAATTAATGGAAC
96066055 TAAATAC
1 TAAATAC
96066062 ATGTAGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (25 bp):
TAAATACTAAATTAATTAATGGAAC
Found at i:96066282 original size:11 final size:11
Alignment explanation
Indices: 96066261--96066289 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
96066251 TGTAACTGTG
96066261 AAAAT-AAAAT
1 AAAATAAAAAT
96066271 AAAATAAAAAT
1 AAAATAAAAAT
96066282 AAAATAAA
1 AAAATAAA
96066290 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:96070667 original size:5 final size:5
Alignment explanation
Indices: 96070657--96070721 Score: 112
Period size: 5 Copynumber: 12.6 Consensus size: 5
96070647 CCAATTTGTG
96070657 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT --AAAAT
96070709 AAAAT AAAAT AAA
1 AAAAT AAAAT AAA
96070722 GAACACACAG
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
5 53 0.91
7 5 0.09
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:96072909 original size:43 final size:43
Alignment explanation
Indices: 96072825--96072974 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
96072815 TCTGAGACAT
* * * * *
96072825 CGTGTAAGATCGTGTCTGGGACACAGGCCTCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* **
96072868 CGTATAAGACCATGTCTGGGACATCGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* * * * *
96072910 TGTGTAAGACCCTATCTGGGATAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
* *
96072953 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
96072975 GTTGGCATTG
Statistics
Matches: 82, Mismatches: 22, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
42 31 0.38
43 51 0.62
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
Found at i:96076997 original size:46 final size:46
Alignment explanation
Indices: 96076927--96077055 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
96076917 TGTAACCCGC
* * *
96076927 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
96076973 CCATAAGTGAACTCGGACTGAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
*
96077019 CCATAAGTGAACTCAGACTCAATTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
96077056 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:96083272 original size:46 final size:46
Alignment explanation
Indices: 96082389--96083244 Score: 1658
Period size: 46 Copynumber: 18.6 Consensus size: 46
96082379 TGTAACGCGC
96082389 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082435 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082481 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082527 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082573 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082619 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082665 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082711 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082757 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082803 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082849 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082895 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082941 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96082987 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96083033 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96083079 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
96083125 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
* * * * *
96083171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
*
96083217 CCATAAGTGAACTCGGACTCAATTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
96083245 GAGTTCGGAT
Statistics
Matches: 804, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 804 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCACAT
Found at i:96095392 original size:5 final size:5
Alignment explanation
Indices: 96095382--96095406 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
96095372 TGGCTCATTT
96095382 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
96095407 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:96096944 original size:39 final size:38
Alignment explanation
Indices: 96096890--96096974 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 38
96096880 AGGGTGATAT
* * *
96096890 AAGAAATAAGCGCACCAGAAGAGAAAAAGAAATAGGGA
1 AAGATATAAGCGCACCAGAAGAGAAAAAGAAACAGGAA
* *
96096928 AAGNATATAAGTGCACCAGAAGAGAGAAAGAAACAGGAA
1 AAG-ATATAAGCGCACCAGAAGAGAAAAAGAAACAGGAA
96096967 AAGA-ATAA
1 AAGATATAA
96096975 ACACATACCC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
37 4 0.10
38 4 0.10
39 33 0.80
ACGTcount: A:0.58, C:0.09, G:0.25, T:0.07
Consensus pattern (38 bp):
AAGATATAAGCGCACCAGAAGAGAAAAAGAAACAGGAA
Found at i:96100252 original size:93 final size:93
Alignment explanation
Indices: 96100093--96100265 Score: 258
Period size: 93 Copynumber: 1.9 Consensus size: 93
96100083 AGGATATTTG
*
96100093 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTGAG
96100158 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * * *
96100186 GGCATCCTAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGTGAACG-CTCGAGCTTGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTTGTTGA
*
96100250 GTTGAGTCTGAGTTCG
65 GTTGAGTCCGAGTTCG
96100266 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTTGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:96102188 original size:9 final size:9
Alignment explanation
Indices: 96102174--96102202 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
96102164 AATTTGCGCT
96102174 TTAAGCTCC
1 TTAAGCTCC
96102183 TTAAGCTCC
1 TTAAGCTCC
96102192 TTAAGCTCC
1 TTAAGCTCC
96102201 TT
1 TT
96102203 TGGTGCATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.31, G:0.10, T:0.38
Consensus pattern (9 bp):
TTAAGCTCC
Found at i:96118195 original size:26 final size:26
Alignment explanation
Indices: 96118159--96118238 Score: 112
Period size: 25 Copynumber: 3.2 Consensus size: 26
96118149 CTCATCAAGT
96118159 AAGTTAAAAAAAAAGTTTCGAAAAAA
1 AAGTTAAAAAAAAAGTTTCGAAAAAA
*
96118185 AAGTTAAAAAAAGAGTTTCG-AAAAA
1 AAGTTAAAAAAAAAGTTTCGAAAAAA
*
96118210 AAGTTCAAAAAAAA--TTCGAAAAAA
1 AAGTTAAAAAAAAAGTTTCGAAAAAA
96118234 TAAGT
1 -AAGT
96118239 GTGTTAAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
23 4 0.08
24 5 0.10
25 21 0.43
26 19 0.39
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.20
Consensus pattern (26 bp):
AAGTTAAAAAAAAAGTTTCGAAAAAA
Found at i:96118231 original size:11 final size:12
Alignment explanation
Indices: 96118166--96118233 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 12
96118156 AGTAAGTTAA
96118166 AAAAAAAGTTTCG
1 AAAAAAAG-TTCG
*
96118179 AAAAAAAAGTT-A
1 -AAAAAAAGTTCG
96118191 AAAAAAGAGTTTCG
1 AAAAAA-AG-TTCG
96118205 AAAAAAAGTTC-
1 AAAAAAAGTTCG
*
96118216 AAAAAAAATTCG
1 AAAAAAAGTTCG
96118228 AAAAAA
1 AAAAAA
96118234 TAAGTGTGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
11 16 0.34
12 11 0.23
13 6 0.13
14 14 0.30
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (12 bp):
AAAAAAAGTTCG
Found at i:96119328 original size:12 final size:12
Alignment explanation
Indices: 96119268--96119328 Score: 77
Period size: 12 Copynumber: 5.1 Consensus size: 12
96119258 GAAAAAGAAC
*
96119268 AAAAAGAGAGTG
1 AAAAAGAGATTG
*
96119280 AAAATGAGATTG
1 AAAAAGAGATTG
*
96119292 AAAAAGAAATTG
1 AAAAAGAGATTG
96119304 AAAAAGAGATTG
1 AAAAAGAGATTG
* *
96119316 AACAAGAGTTTG
1 AAAAAGAGATTG
96119328 A
1 A
96119329 GAGAGAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.56, C:0.02, G:0.25, T:0.18
Consensus pattern (12 bp):
AAAAAGAGATTG
Found at i:96129105 original size:47 final size:47
Alignment explanation
Indices: 96129020--96129138 Score: 157
Period size: 47 Copynumber: 2.5 Consensus size: 47
96129010 CTTCGGGACT
* * * * *
96129020 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * *
96129067 TGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
96129114 TATCACATATATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
96129139 ACCAACCCTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:96129434 original size:39 final size:40
Alignment explanation
Indices: 96129363--96129504 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
96129353 ACTACTCGTT
* *
96129363 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
96129403 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
96129442 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
96129483 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
96129505 AGACATCATT
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.36
40 41 0.47
41 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:96144177 original size:29 final size:30
Alignment explanation
Indices: 96144132--96144191 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
96144122 GGCTCGGGTT
*
96144132 TTTGGAAAAAGAACTATGAGTAAGTCACAA
1 TTTGGAAAAAGAACTATAAGTAAGTCACAA
96144162 TTTGGAAAAA-AACTATAAGTAAGTCACAA
1 TTTGGAAAAAGAACTATAAGTAAGTCACAA
96144191 T
1 T
96144192 CATTTACTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (30 bp):
TTTGGAAAAAGAACTATAAGTAAGTCACAA
Found at i:96146947 original size:56 final size:56
Alignment explanation
Indices: 96146881--96147010 Score: 215
Period size: 56 Copynumber: 2.3 Consensus size: 56
96146871 AGTAAGACCA
* * *
96146881 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCCAGTTTGGGACAG
1 TGGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCCAGTCTGGGACAG
**
96146937 TGGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCTTGTCTGGGACAG
1 TGGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCCAGTCTGGGACAG
96146993 TGGCATCGATATGTGATT
1 TGGCATCGATATGTGATT
96147011 ACATGTAAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCCAGTCTGGGACAG
Found at i:96153204 original size:46 final size:46
Alignment explanation
Indices: 96153087--96153211 Score: 162
Period size: 46 Copynumber: 2.7 Consensus size: 46
96153077 ATCCTGAAGT
* * * **
96153087 CGATGTATGTCCCAGACATGTCTTAAACTAGCTCTCATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACAATGC
**
96153133 CGATGCACATCCCAGACATGTCTTACACTGGCTCTCATAAC-ATGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACAAT-GC
*
96153179 CGATGCATGTCCCAGACATGTCTTACATTGGCT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCT
96153212 TACATACCAT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 2 0.03
46 66 0.97
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACAATGC
Found at i:96157292 original size:43 final size:43
Alignment explanation
Indices: 96157226--96157346 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 43
96157216 GAAAACAACG
* ** * *
96157226 CCGCTAAAGGTCCTGACCTTTAGCGGTGCTTTTCCCACAAACT
1 CCGCAAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
* * *
96157269 CTGTAAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCACAAACA
1 CCGCAAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
*
96157312 CCGCCAAAGGTCAAGACCTTTAGCGGCGCTTTTCC
1 CCGCAAAAGGTCAAGACCTTTAGCGGCGCTTTTCC
96157347 AAAAAACGTC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (43 bp):
CCGCAAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
Found at i:96157364 original size:43 final size:43
Alignment explanation
Indices: 96157217--96157367 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 43
96157207 CGTTTATTTG
** *
96157217 AAAACAACGCCGCTAAAGGTCCTGACCTTTAGCGGTGCTTTTCC
1 AAAA-AACGCCGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCC
* * * * *
96157261 CACAAACTCTG-TAAAAGGTCAGGACCTTTAGCGGCGCTTTTCC
1 AAAAAACGCCGCT-AAAGGTCAAGACCTTTAGCGGCGCTTTTCC
* * * *
96157304 CACAAACACCGCCAAAGGTCAAGACCTTTAGCGGCGCTTTTCC
1 AAAAAACGCCGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCC
*
96157347 AAAAAACGTCGCTAAAGGTCA
1 AAAAAACGCCGCTAAAGGTCA
96157368 TAAAAATTAA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 86 0.97
44 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCC
Done.