Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 292 of 310
Found at i:96162548 original size:23 final size:22
Alignment explanation
Indices: 96162529--96162591 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
96162519 TAAAAAATGC
96162529 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAA-TT
*
96162552 TAATA-AATATAAAT-TAAAAATT
1 TAATACAAT-TACATAT-AAAATT
96162574 TAAATACAATTACATATA
1 T-AATACAATTACATATA
96162592 TAGGATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 7 0.21
23 22 0.67
24 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATACAATTACATATAAAATT
Found at i:96163210 original size:21 final size:21
Alignment explanation
Indices: 96163184--96163257 Score: 76
Period size: 21 Copynumber: 3.3 Consensus size: 21
96163174 ACTCCTAAAC
96163184 CTTAAACCCTAAACCATATAT
1 CTTAAACCCTAAACCATATAT
* * *
96163205 CTTAAACCATAGTTAACTCAAAAAT
1 CTTAAACCCTA---AAC-CATATAT
*
96163230 CTTAAACCCTAAACTATATAT
1 CTTAAACCCTAAACCATATAT
96163251 CTTAAAC
1 CTTAAAC
96163258 TATATATCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 21 0.50
22 3 0.07
24 3 0.07
25 15 0.36
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (21 bp):
CTTAAACCCTAAACCATATAT
Found at i:96163221 original size:46 final size:46
Alignment explanation
Indices: 96163168--96163257 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
96163158 CTTCAAATAC
**
96163168 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
* *
96163214 TAGTTAACTCAAAAATCTTAAACCCTAAACTATATATCTTAAAC
1 TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAAC
96163258 TATATATCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCAAAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:96163258 original size:14 final size:14
Alignment explanation
Indices: 96163239--96163271 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
96163229 TCTTAAACCC
96163239 TAAACTATATATCT
1 TAAACTATATATCT
96163253 TAAACTATATATCT
1 TAAACTATATATCT
96163267 TAAAC
1 TAAAC
96163272 CATAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAACTATATATCT
Found at i:96163490 original size:41 final size:41
Alignment explanation
Indices: 96163433--96163691 Score: 337
Period size: 41 Copynumber: 6.4 Consensus size: 41
96163423 GTTATATGAC
*
96163433 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
* *
96163474 TTTTAGCGGCGTTTTGCCAATAGCGCCGTTAATGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
*
96163515 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGG-
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
* * *
96163555 TTTTAGCAGCGTTTTTCCAAAAGCGCTGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
*
96163596 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATTCTCT-GT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
* * * * * *
96163636 TTTTCGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-AT
1 TTTTAGCGGCG--TTTTGCCAAAAGCGCCGCTAATGCTCTGGT
*
96163677 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
96163692 TGGTAAAACA
Statistics
Matches: 195, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.02
40 49 0.25
41 133 0.68
42 9 0.05
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:96163606 original size:81 final size:81
Alignment explanation
Indices: 96163433--96163691 Score: 342
Period size: 81 Copynumber: 3.2 Consensus size: 81
96163423 GTTATATGAC
* * *
96163433 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCGTTTTGCCAATAGC
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGG-TTTTAGCGGCGTTTTTCCAAAAGC
*
96163498 GCCGTTAATGCTCTGGT
65 GCCGCTAATGCTCTGGT
* *
96163515 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTAGCAGCGTTTTTCCAAAAGCG
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTAGCGGCGTTTTTCCAAAAGCG
*
96163580 CTGCTAATGCTCTGGT
66 CCGCTAATGCTCTGGT
* * * * *
96163596 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATTCTCTGTTTTTCGTGGCGTTTTTTACTAAAA-
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTAGCGGCG-TTTTT-CCAAAAG
* *
96163660 CGCCGCTATTGCTCT-AT
64 CGCCGCTAATGCTCTGGT
*
96163677 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
96163692 TGGTAAAACA
Statistics
Matches: 157, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
81 96 0.61
82 56 0.36
83 5 0.03
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.38
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTAGCGGCGTTTTTCCAAAAGCG
CCGCTAATGCTCTGGT
Found at i:96163652 original size:122 final size:122
Alignment explanation
Indices: 96163433--96163692 Score: 362
Period size: 122 Copynumber: 2.1 Consensus size: 122
96163423 GTTATATGAC
* * *
96163433 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCGTTTTGCCAATAGC
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGC
* *
96163498 GCCGTTAATGCTCTGGTTTTTAGCGGCGTTTTT-CCAAAAGCGCCGCTAATGCTCTGG
66 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTACCAAAA-CGCCGCTAATGCTCTAG
* *
96163555 TTTTAGCAGCGTTTTTCCAAAAGCGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGC
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGC
* * * * * *
96163620 GCCGCTAATTCTCT-GTTTTTCGTGGCGTTTTTTACTAAAACGCCGCTATTGCTCTAT
66 GCCGCTAATGCTCTGGTTTTTAGCGGCG-TTTTTACCAAAACGCCGCTAATGCTCTAG
*
96163677 TTTTAGTGGCGTTTTT
1 TTTTAGCGGCGTTTTT
96163693 GGTAAAACAC
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
121 11 0.09
122 105 0.87
123 5 0.04
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (122 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGC
GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTACCAAAACGCCGCTAATGCTCTAG
Found at i:96163722 original size:41 final size:41
Alignment explanation
Indices: 96163635--96163714 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 41
96163625 TAATTCTCTG
* * *
96163635 TTTTTCGTGGCGTTTTTTACTAAAACGCCGCTATTGCTCTA
1 TTTTTAGTGGCGTTTTTTACTAAAACACCGCTATTGCTATA
**
96163676 TTTTTAGTGGCG-TTTTTGGTAAAACACCGCTATTGCTAT
1 TTTTTAGTGGCGTTTTTTACTAAAACACCGCTATTGCTAT
96163715 GTGTTTTACA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 23 0.68
41 11 0.32
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (41 bp):
TTTTTAGTGGCGTTTTTTACTAAAACACCGCTATTGCTATA
Found at i:96167435 original size:49 final size:49
Alignment explanation
Indices: 96167364--96167489 Score: 139
Period size: 49 Copynumber: 2.6 Consensus size: 49
96167354 ATTAAAGTCG
* * * *
96167364 ATGCCGTGTCCCAGACAGGTCTTACATTGACTTTCATA-TATCTA-TGTCA
1 ATGCCATGTCCCAGCCAGGTCTTACACTGACTCTCA-ACTA-CTAGTGTCA
* ** * *
96167413 ATGCCATGTTCCAGGTAGGTCTTACACTGGCTCTCAACTACTAGTGTCG
1 ATGCCATGTCCCAGCCAGGTCTTACACTGACTCTCAACTACTAGTGTCA
96167462 ATGCCATGTCCCAGCCAGGTCTTACACT
1 ATGCCATGTCCCAGCCAGGTCTTACACT
96167490 AACACACAAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 4 0.06
49 60 0.94
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (49 bp):
ATGCCATGTCCCAGCCAGGTCTTACACTGACTCTCAACTACTAGTGTCA
Found at i:96182385 original size:43 final size:42
Alignment explanation
Indices: 96182319--96182478 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
96182309 AGCTCGTACA
* * *
96182319 ATGCCAATGTCCCAGACGTGGTCTTACAGGTAATCAAACATCG
1 ATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAACAT-G
* * *
96182362 ATGCCACTGTCCCAAACAG-GGTCTTACACGAAATCATATATG
1 ATGCCAATGTCCCAAAC-GTGGTCTTACACGAAATCAAACATG
* * * * * *
96182404 ATGCCAATGTCCCAGACATTGTTTTACATGTAAATCTCAA-ATCG
1 ATGCCAATGTCCCAAACGTGGTCTTACACG-AAATC-AAACAT-G
* **
96182448 ATGCCAACGTCCCAAACGTACTCTTACACGA
1 ATGCCAATGTCCCAAACGTGGTCTTACACGA
96182479 TAACACATAT
Statistics
Matches: 91, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 24 0.26
43 41 0.45
44 26 0.29
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAACATG
Found at i:96182431 original size:42 final size:43
Alignment explanation
Indices: 96182319--96182461 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 43
96182309 AGCTCGTACA
* * *
96182319 ATGCCAATGTCCCAGACGTGGTCTTACAGGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAACATCG
* * * * *
96182362 ATGCCACTGTCCCAAACAGGGTCTTACACGAAATCATATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAACATCG
* * * *
96182404 ATGCCAATGTCCCAGACATTGTTTTACATGTAAATCTCAA-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATC-AAACATCG
*
96182448 ATGCCAACGTCCCA
1 ATGCCAATGTCCCA
96182462 AACGTACTCT
Statistics
Matches: 80, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
42 25 0.31
43 40 0.50
44 15 0.19
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAACATCG
Found at i:96182473 original size:86 final size:85
Alignment explanation
Indices: 96182319--96182478 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
96182309 AGCTCGTACA
* **
96182319 ATGCCAATGTCCCAGACGTGGTCTTACAGGTAATCAAACATCGATGCCACTGTCCCAAACAGGGT
1 ATGCCAATGTCCCAGACATGGTCTTACAGGTAATCAAACATCGATGCCACTGTCCCAAACAGACT
96182384 CTTACACGAAATCATATATG
66 CTTACACGAAATCATATATG
* * * *
96182404 ATGCCAATGTCCCAGACATTGTTTTACATGTAAATCTCAA-ATCGATGCCAAC-GTCCCAAAC-G
1 ATGCCAATGTCCCAGACATGGTCTTACAGGT-AATC-AAACATCGATGCC-ACTGTCCCAAACAG
96182466 TACTCTTACACGA
63 -ACTCTTACACGA
96182479 TAACACATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 28 0.44
86 32 0.50
87 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACAGGTAATCAAACATCGATGCCACTGTCCCAAACAGACT
CTTACACGAAATCATATATG
Found at i:96188276 original size:48 final size:47
Alignment explanation
Indices: 96188144--96188332 Score: 209
Period size: 48 Copynumber: 4.0 Consensus size: 47
96188134 GGTAAATTGT
* * * *
96188144 TGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATGC
* * * * * *
96188192 TGTTGCCATATCCCAGACATGGTCTTAAACTAGCTCTCATCTCAATGC
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATGC
* * * *
96188240 TAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACATCGC
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAT-GC
*
96188288 TGATGCCATGTTCCAAACATGGTCTTACA-TGGCTCTCATATCATG
1 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATG
96188333 TAACGCCCCG
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
46 1 0.01
47 15 0.13
48 101 0.86
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGC
Found at i:96191832 original size:15 final size:15
Alignment explanation
Indices: 96191773--96191852 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
96191763 CAAAGATAAC
*
96191773 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
96191787 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
96191802 GAA-AAACCCGGAATA
1 -AAGAAATCCAGAATA
96191817 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
96191832 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
96191847 AAGAAA
1 AAGAAA
96191853 CCCAAGATAT
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 11 0.21
15 39 0.74
16 3 0.06
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:96191861 original size:15 final size:15
Alignment explanation
Indices: 96191784--96191861 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
96191774 AGAAAACCGA
96191784 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
**
96191799 ATAGAA-AAA-CCCGG
1 ATA-AAGAAATCCAAG
96191813 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
96191828 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
96191844 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
96191859 ATA
1 ATA
96191862 TGATACTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
14 5 0.10
15 40 0.80
16 5 0.10
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:96198151 original size:17 final size:18
Alignment explanation
Indices: 96198129--96198163 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
96198119 TCATATTGAA
96198129 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
96198146 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
96198164 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:96199252 original size:29 final size:29
Alignment explanation
Indices: 96199206--96199309 Score: 133
Period size: 29 Copynumber: 3.7 Consensus size: 29
96199196 GGTCCGTTAA
* *
96199206 GCCC-AATCATATTCATATGACCCATTAG
1 GCCCAAATCACATTCATATGGCCCATTAG
*
96199234 GCCCAAATCACCTGT-ATATGGCCCATTAG
1 GCCCAAATCACAT-TCATATGGCCCATTAG
*
96199263 GCCCAAATCACATTCATATGGCCCGTTAG
1 GCCCAAATCACATTCATATGGCCCATTAG
*
96199292 GCCC-AGTCACATTCATAT
1 GCCCAAATCACATTCATAT
96199310 TCATGCTCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
28 18 0.27
29 48 0.72
30 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
GCCCAAATCACATTCATATGGCCCATTAG
Found at i:96202617 original size:21 final size:20
Alignment explanation
Indices: 96202585--96202651 Score: 75
Period size: 20 Copynumber: 3.3 Consensus size: 20
96202575 GTTTTCATTT
*
96202585 AAAAGAAACCTTAATTAACA
1 AAAAAAAACCTTAATTAACA
*
96202605 AAAAAAAACCCTT-CTTAA-A
1 AAAAAAAA-CCTTAATTAACA
96202624 ATAAAAGAAACCTTAATTAACA
1 A-AAAA-AAACCTTAATTAACA
96202646 AAAAAA
1 AAAAAA
96202652 CAAACTACTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
19 2 0.05
20 20 0.51
21 15 0.38
22 2 0.05
ACGTcount: A:0.63, C:0.15, G:0.03, T:0.19
Consensus pattern (20 bp):
AAAAAAAACCTTAATTAACA
Found at i:96202663 original size:41 final size:41
Alignment explanation
Indices: 96202584--96202663 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
96202574 TGTTTTCATT
* *
96202584 TAAAAGAAACCTTAATTAACAAAAAAAAACCCTTCTTAAAA
1 TAAAAGAAACCTTAATTAACAAAAAAAAACACTACTTAAAA
96202625 TAAAAGAAACCTTAATTAACAAAAAAACAA-ACTACTTAA
1 TAAAAGAAACCTTAATTAACAAAAAAA-AACACTACTTAA
96202664 CATCACTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 34 0.94
42 2 0.06
ACGTcount: A:0.60, C:0.16, G:0.03, T:0.21
Consensus pattern (41 bp):
TAAAAGAAACCTTAATTAACAAAAAAAAACACTACTTAAAA
Found at i:96202797 original size:15 final size:15
Alignment explanation
Indices: 96202774--96202812 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
96202764 CAACTTCTAG
* *
96202774 TAATTATAATGAAAA
1 TAATAATAATCAAAA
*
96202789 TAATAATAATCCAAA
1 TAATAATAATCAAAA
96202804 TAATAATAA
1 TAATAATAA
96202813 GAAGGAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (15 bp):
TAATAATAATCAAAA
Found at i:96203745 original size:29 final size:29
Alignment explanation
Indices: 96203679--96203818 Score: 194
Period size: 29 Copynumber: 4.9 Consensus size: 29
96203669 AAATTCACAT
* *
96203679 ACCTGTATCTGGCCCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
96203707 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
96203736 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
96203765 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
* * *
96203794 ACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAGGCCCA
96203819 GTCACATTCA
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.01
28 18 0.18
29 80 0.80
30 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:96203843 original size:18 final size:17
Alignment explanation
Indices: 96203820--96203861 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
96203810 TTAGGCCCAG
*
96203820 TCACATTCAAATTCATA
1 TCACATACAAATTCATA
*
96203837 CTCACATACAAATTCCTA
1 -TCACATACAAATTCATA
96203855 TCACATA
1 TCACATA
96203862 GCATCAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.31
Consensus pattern (17 bp):
TCACATACAAATTCATA
Found at i:96206140 original size:42 final size:42
Alignment explanation
Indices: 96206038--96206194 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
96206028 AGCTCGTACA
* * ***
96206038 ATGCCAACGTCCCAGACCTGGTCTTACATGTAATCAAATATC
1 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCAAATATC
* * *
96206080 AGTGCCACTGTCCCAGACAGGGTCTTACACAAAATCATATA-C
1 A-TGCCAATGTCCCAGACATGGTCTTACACAAAATCAAATATC
*
96206122 GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATAT-
1 -ATGCCAATGTCCCAGACATGGTCTTACAC-AAAAT--CAAATATC
* **
96206167 ATGCCGATGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
96206195 TGATAGCACA
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 28 0.30
43 36 0.38
44 25 0.27
45 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAAAATCAAATATC
Found at i:96208683 original size:11 final size:12
Alignment explanation
Indices: 96208653--96208687 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
96208643 GGGACATTAG
*
96208653 AATTTATTTTGGT
1 AATTT-TTTTGCT
96208666 AATTTTTTTGCT
1 AATTTTTTTGCT
96208678 AATTTTTTTG
1 AATTTTTTTG
96208688 GTTTTAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (12 bp):
AATTTTTTTGCT
Found at i:96212053 original size:13 final size:13
Alignment explanation
Indices: 96212035--96212063 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
96212025 TTTAGTTTAA
96212035 TTAGTTAATTAGT
1 TTAGTTAATTAGT
96212048 TTAGTTAATTAGT
1 TTAGTTAATTAGT
96212061 TTA
1 TTA
96212064 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:96218876 original size:20 final size:18
Alignment explanation
Indices: 96218851--96218887 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
96218841 ATTGCTAAGT
96218851 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
96218871 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
96218888 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:96225604 original size:29 final size:28
Alignment explanation
Indices: 96225571--96225647 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 28
96225561 ACAGACTTAA
*
96225571 TGGGCC-AGATGGTCCATATAAATGTGATT
1 TGGGCCTAG-TGGGCCATATAAATGTGA-T
96225600 TGGGCCTAGTGGGCCATATAAATGTGAT
1 TGGGCCTAGTGGGCCATATAAATGTGAT
* *
96225628 TGGGCCTAGTAGACCATATA
1 TGGGCCTAGTGGGCCATATA
96225648 CAGGTATGTG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 19 0.43
29 23 0.52
30 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
TGGGCCTAGTGGGCCATATAAATGTGAT
Found at i:96225644 original size:28 final size:29
Alignment explanation
Indices: 96225584--96225647 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 29
96225574 GCCAGATGGT
* *
96225584 CCATATAAATGTGATTTGGGCCTAGTGGG
1 CCATATAAATGTGATTTGGGCCTAGTAGA
96225613 CCATATAAATGTGA-TTGGGCCTAGTAGA
1 CCATATAAATGTGATTTGGGCCTAGTAGA
96225641 CCATATA
1 CCATATA
96225648 CAGGTATGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
28 19 0.58
29 14 0.42
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (29 bp):
CCATATAAATGTGATTTGGGCCTAGTAGA
Found at i:96228228 original size:27 final size:27
Alignment explanation
Indices: 96228197--96228259 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
96228187 CCAAAATACA
*
96228197 TAAAATGACCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTATAGGG
** *
96228224 TAAAATGACCGTAATACCTTTATATGG
1 TAAAATGACCGTAATACCCCTATAGGG
96228251 TAAAATGAC
1 TAAAATGAC
96228260 GATTATGCCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTATAGGG
Found at i:96228674 original size:28 final size:28
Alignment explanation
Indices: 96228638--96228698 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
96228628 ATTACACTGT
* * * * * *
96228638 ACTGATACTTTATTGGGCTTAGGTCCAC
1 ACTGTTACTGTATAGGGCTAAGGCCCAA
96228666 ACTGTTACTGTATAGGGCTAAGGCCCAA
1 ACTGTTACTGTATAGGGCTAAGGCCCAA
96228694 ACTGT
1 ACTGT
96228699 ACTAATATTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTAAGGCCCAA
Found at i:96234844 original size:16 final size:15
Alignment explanation
Indices: 96234819--96234849 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
96234809 TGATAGGTCT
96234819 CCGATGAGCTTCCAA
1 CCGATGAGCTTCCAA
96234834 CCGATTGAGCTTCCAA
1 CCGA-TGAGCTTCCAA
96234850 TAATCTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (15 bp):
CCGATGAGCTTCCAA
Found at i:96245726 original size:13 final size:13
Alignment explanation
Indices: 96245708--96245733 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96245698 ATAATATAAT
96245708 TATTTTATGTTAA
1 TATTTTATGTTAA
96245721 TATTTTATGTTAA
1 TATTTTATGTTAA
96245734 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:96248087 original size:22 final size:22
Alignment explanation
Indices: 96248059--96248275 Score: 90
Period size: 22 Copynumber: 9.3 Consensus size: 22
96248049 ACATGTACAT
*
96248059 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* *
96248081 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCTG-A-ATGGC-CA
**
96248105 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
* *
96248128 ATGTGATGAATG-TGAACAT-GCAA
1 ATGTGAT-AAGGCTG-A-ATGGCCA
*
96248151 ATGTGTGATAAGGCCGAATGGCCA
1 A--TGTGATAAGGCTGAATGGCCA
*
96248175 ATGTGATGAATG-TGAACAT-GCACA
1 ATGTGAT-AAGGCTG-A-ATGGC-CA
96248199 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
* *
96248222 ATGTGATAAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCTG-A-ATGGC-CA
*
96248246 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
96248269 ATGTGAT
1 ATGTGAT
96248276 GAACGTGGAA
Statistics
Matches: 145, Mismatches: 22, Indels: 56
0.65 0.10 0.25
Matches are distributed among these distances:
22 38 0.26
23 38 0.26
24 38 0.26
25 31 0.21
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:96248159 original size:25 final size:24
Alignment explanation
Indices: 96248082--96248253 Score: 69
Period size: 23 Copynumber: 7.2 Consensus size: 24
96248072 GAATGGCCAA
*
96248082 TGTGATGAATGTGAACATGCATAT
1 TGTGATGAATGTGAACATGCAAAT
* ** *
96248106 ATGTGAT-AAGGCCAA-ATGGCCAA-
1 -TGTGATGAATGTGAACAT-GCAAAT
96248129 TGTGATGAATGTGAACATGCAAAT
1 TGTGATGAATGTGAACATGCAAAT
* * *
96248153 GTGTGAT-AAGGCCG-A-ATGGCCAA-
1 -TGTGATGAATG-TGAACAT-GCAAAT
*
96248176 TGTGATGAATGTGAACATGCACAT
1 TGTGATGAATGTGAACATGCAAAT
* *
96248200 ATGTGAT-AAGGCTG-A-ATGGCCAA-
1 -TGTGATGAATG-TGAACAT-GCAAAT
* *
96248223 TGTGATAAATGTGAACATGCATAT
1 TGTGATGAATGTGAACATGCAAAT
96248247 ATGTGAT
1 -TGTGAT
96248254 AAGGCAGAAT
Statistics
Matches: 106, Mismatches: 22, Indels: 38
0.64 0.13 0.23
Matches are distributed among these distances:
22 21 0.20
23 29 0.27
24 29 0.27
25 27 0.25
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (24 bp):
TGTGATGAATGTGAACATGCAAAT
Found at i:96248312 original size:47 final size:47
Alignment explanation
Indices: 96248033--96248278 Score: 411
Period size: 47 Copynumber: 5.2 Consensus size: 47
96248023 TTTAGGATTT
* *
96248033 AATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
96248080 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
96248127 AATGTGATGAATGTGAACATGCAAATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
96248174 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
96248221 AATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
96248268 AATGTGATGAA
1 AATGTGATGAA
96248279 CGTGGAAGTG
Statistics
Matches: 186, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 186 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:96248345 original size:46 final size:46
Alignment explanation
Indices: 96248292--96248382 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
96248282 GGAAGTGTAT
** * *
96248292 ATATGTGGGAAAGCTGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
96248338 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
96248383 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.05, G:0.32, T:0.29
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:96256622 original size:27 final size:26
Alignment explanation
Indices: 96256578--96256628 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
96256568 CTCGCTGCAA
*
96256578 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
96256605 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
96256629 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:96258136 original size:20 final size:21
Alignment explanation
Indices: 96258102--96258140 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
96258092 CAAGATGATA
*
96258102 TTTTATTATTATTACTTAACT
1 TTTTATCATTATTACTTAACT
96258123 TTTTATCATT-TTACTTAA
1 TTTTATCATTATTACTTAA
96258141 ATGACCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATCATTATTACTTAACT
Found at i:96267193 original size:27 final size:27
Alignment explanation
Indices: 96267162--96267283 Score: 165
Period size: 27 Copynumber: 4.5 Consensus size: 27
96267152 GTTTACCAAT
96267162 TTACCAAAATACCCTCGATTAGCAAAA
1 TTACCAAAATACCCTCGATTAGCAAAA
*
96267189 TTACCAAAATACCCTCGATTAGAAAAA
1 TTACCAAAATACCCTCGATTAGCAAAA
* *
96267216 GTACCAAAATACCTTCGATTAGCAAAA
1 TTACCAAAATACCCTCGATTAGCAAAA
* * *
96267243 TTACCAAAATA-CCTCTGGTTTGTAAAA
1 TTACCAAAATACCCTC-GATTAGCAAAA
*
96267270 TTATCAAAATACCC
1 TTACCAAAATACCC
96267284 CTAATTTTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 3 0.04
27 78 0.94
28 2 0.02
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.25
Consensus pattern (27 bp):
TTACCAAAATACCCTCGATTAGCAAAA
Found at i:96267295 original size:27 final size:27
Alignment explanation
Indices: 96267239--96267313 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
96267229 TTCGATTAGC
* * **
96267239 AAAATTACCAAAATACCTCTGGTTTGT
1 AAAATTATCAAAATACCCCTAATTTGT
*
96267266 AAAATTATCAAAATACCCCTAATTTTT
1 AAAATTATCAAAATACCCCTAATTTGT
* *
96267293 AAAATTTTCGAAATACCCCTA
1 AAAATTATCAAAATACCCCTA
96267314 TAAGGTAGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.33
Consensus pattern (27 bp):
AAAATTATCAAAATACCCCTAATTTGT
Found at i:96267605 original size:27 final size:27
Alignment explanation
Indices: 96267301--96267607 Score: 425
Period size: 27 Copynumber: 11.4 Consensus size: 27
96267291 TTAAAATTTT
* *
96267301 CGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
96267328 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * *
96267355 TAAAATACCCTTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
96267382 TGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
96267409 TGAAATACCCTTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
96267436 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
96267463 CAAAATACCCTTGTAAGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
96267490 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
96267517 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
96267544 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
96267571 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
96267598 CGAGATACCC
1 CGAAATACCC
96267608 TCATGGGGTA
Statistics
Matches: 245, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 245 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:96267608 original size:54 final size:54
Alignment explanation
Indices: 96267302--96267607 Score: 468
Period size: 54 Copynumber: 5.7 Consensus size: 54
96267292 TAAAATTTTC
*
96267302 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * *
96267356 AAAATACCCTTGTAAGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * *
96267410 GAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * *
96267464 AAAATACCCTTGTAAGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * *
96267518 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* *
96267572 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
96267608 TCATGGGGTA
Statistics
Matches: 233, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 233 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
Found at i:96268368 original size:26 final size:27
Alignment explanation
Indices: 96268339--96268398 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
96268329 CCACATATAT
*
96268339 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
96268365 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
96268392 ATATCTG
1 ATATCTG
96268399 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:96271494 original size:11 final size:11
Alignment explanation
Indices: 96271478--96271503 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
96271468 TGCACTTTAG
96271478 TTTTATTATTT
1 TTTTATTATTT
96271489 TTTTATTATTT
1 TTTTATTATTT
96271500 TTTT
1 TTTT
96271504 CTAGTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:96274803 original size:33 final size:33
Alignment explanation
Indices: 96274710--96274808 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 33
96274700 AGTGAATAAC
* * * *
96274710 ATAGTCTGGGCCCAAGACTTATTCAATATCAGT
1 ATAGTCTGGGCCCTAGCCCTATTCAGTATCAGT
* * *
96274743 ACAGTCTAGG-CGTAAGCCCTATTCAGTATCAGT
1 ATAGTCTGGGCCCT-AGCCCTATTCAGTATCAGT
* *
96274776 ATAGTCTGGGCCCTAGCCCTATACAGTAGCAGT
1 ATAGTCTGGGCCCTAGCCCTATTCAGTATCAGT
96274809 GTAGGCCTAA
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
32 1 0.02
33 49 0.94
34 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (33 bp):
ATAGTCTGGGCCCTAGCCCTATTCAGTATCAGT
Found at i:96275061 original size:27 final size:27
Alignment explanation
Indices: 96274992--96275083 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
96274982 AGCATAACTG
* * *
96274992 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAATTGTGGCATAGCCA
* * *
96275019 CTAGTATCTGTAATTGTGGCATAGCCA
1 CCAGTAACAGTAATTGTGGCATAGCCA
* * *
96275046 CCAGTAACAGTGATTGTGACATAGTCA
1 CCAGTAACAGTAATTGTGGCATAGCCA
96275073 CCAGT-ACAGTA
1 CCAGTAACAGTA
96275084 CTTCCTCCAT
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
26 5 0.10
27 47 0.90
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
CCAGTAACAGTAATTGTGGCATAGCCA
Found at i:96275305 original size:27 final size:27
Alignment explanation
Indices: 96275246--96275308 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
96275236 GGTATTATGA
*
96275246 TCATTTTACCCTATAGGAGTACTACGG
1 TCATTTTACCCTATAGGAGTACTACAG
*
96275273 TCATTTTACCCTATACGG-GTATTACAG
1 TCATTTTACCCTATA-GGAGTACTACAG
*
96275300 TTATTTTAC
1 TCATTTTAC
96275309 AAACTGGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 30 0.94
28 2 0.06
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATAGGAGTACTACAG
Found at i:96276852 original size:12 final size:12
Alignment explanation
Indices: 96276835--96276859 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96276825 CGACAATGCC
96276835 AGAAACCAAAAT
1 AGAAACCAAAAT
96276847 AGAAACCAAAAT
1 AGAAACCAAAAT
96276859 A
1 A
96276860 AGAGACTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (12 bp):
AGAAACCAAAAT
Found at i:96279182 original size:33 final size:33
Alignment explanation
Indices: 96279141--96279239 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
96279131 AGTGAATAAC
96279141 ACAATCTGGGCCCAAGCCCTATACAGTATCAGT
1 ACAATCTGGGCCCAAGCCCTATACAGTATCAGT
* ** *
96279174 ACAGTCTGGGCTTAAGCCCTATTCAGTATCAGT
1 ACAATCTGGGCCCAAGCCCTATACAGTATCAGT
* *
96279207 ACAATCTGGGCCCTAGCCCTATACAGTAGCAGT
1 ACAATCTGGGCCCAAGCCCTATACAGTATCAGT
96279240 GTAGGCTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (33 bp):
ACAATCTGGGCCCAAGCCCTATACAGTATCAGT
Found at i:96279742 original size:27 final size:27
Alignment explanation
Indices: 96279650--96279798 Score: 163
Period size: 27 Copynumber: 5.4 Consensus size: 27
96279640 CGACATAATT
**
96279650 GTCATTTTACAATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
96279677 ATCATTTTACCTTGAAGAAAGGGGTAATACG
1 GTCATTTTACCCT----ACAGGGGTATTACG
* *
96279708 GTCGTTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
96279735 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
96279762 GTCATTTTATCCTACAGGGGTAATACG
1 GTCATTTTACCCTACAGGGGTATTACG
96279789 GTCATTTTAC
1 GTCATTTTAC
96279799 AAATTAGGGT
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
27 78 0.78
31 22 0.22
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:96280928 original size:27 final size:26
Alignment explanation
Indices: 96280876--96280935 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
96280866 ACATATATAT
*
96280876 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
96280902 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
96280929 ATATCTG
1 ATATCTG
96280936 GTAGCCTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:96300353 original size:29 final size:29
Alignment explanation
Indices: 96300307--96300375 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
96300297 GCCTTTGTCG
*
96300307 ACCACACGGCCGTATCTCGTACATGGCCA
1 ACCACACGGCCGTATCTCGTACACGGCCA
* *
96300336 ACCATACGGCCGTGTCTCGTACACGGCCA
1 ACCACACGGCCGTATCTCGTACACGGCCA
*
96300365 ACCACATGGCC
1 ACCACACGGCC
96300376 AGGCACATGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.23, C:0.39, G:0.22, T:0.16
Consensus pattern (29 bp):
ACCACACGGCCGTATCTCGTACACGGCCA
Found at i:96308725 original size:42 final size:43
Alignment explanation
Indices: 96308677--96308767 Score: 130
Period size: 42 Copynumber: 2.1 Consensus size: 43
96308667 GGAGGGTGCT
* * * *
96308677 AAGGTTGTTGGCAATAAATGTGGTGATGGTGAGGGAGGTGGTG
1 AAGGTTGTTGGCAATAAAGGTGGTAAGGGTGAAGGAGGTGGTG
*
96308720 -AGGTTGTTGGCAGTAAAGGTGGTAAGGGTGAAGGAGGTGGTG
1 AAGGTTGTTGGCAATAAAGGTGGTAAGGGTGAAGGAGGTGGTG
96308762 AAGGTT
1 AAGGTT
96308768 TAGGTGAGGG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 37 0.88
43 5 0.12
ACGTcount: A:0.24, C:0.02, G:0.47, T:0.26
Consensus pattern (43 bp):
AAGGTTGTTGGCAATAAAGGTGGTAAGGGTGAAGGAGGTGGTG
Found at i:96309377 original size:76 final size:76
Alignment explanation
Indices: 96309270--96309414 Score: 168
Period size: 76 Copynumber: 1.9 Consensus size: 76
96309260 TGATCTGCTT
* *** * *
96309270 CATTATATGTTTTGTTTGTTAAATGCATCTTTATTTAATATTTTGCATTAATACATCTA-CATCT
1 CATTATATGTTTTGTTTATTAAATGCATCTTTAGCCAATACTTTGCATTAATACAT-TAGCATCA
96309334 TTTAAAAATGTG
65 TTTAAAAATGTG
* ** *
96309346 CATTATAT-TTCTTGTTTATTGAATGTGTCTTTAGCCAATGCTTTGCATTAATACATTAGCATCA
1 CATTATATGTT-TTGTTTATTAAATGCATCTTTAGCCAATACTTTGCATTAATACATTAGCATCA
96309410 TTTAA
65 TTTAA
96309415 GACTTGCATT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
75 4 0.07
76 53 0.93
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.48
Consensus pattern (76 bp):
CATTATATGTTTTGTTTATTAAATGCATCTTTAGCCAATACTTTGCATTAATACATTAGCATCAT
TTAAAAATGTG
Found at i:96322260 original size:77 final size:80
Alignment explanation
Indices: 96322119--96322316 Score: 294
Period size: 77 Copynumber: 2.5 Consensus size: 80
96322109 TTGAGATGGT
* **
96322119 TAACATATTTTGTTTGTTTTTGGAAATGATTTGTTGAAATGGTTGGTTAACATTTTACTGCTATA
1 TAACATA--TTGTTTGTTTTTGGAAATGATTTGTTGAAATGGTTGGTTAACATCTTACAACTATA
96322184 GGATCATTTTGTTAGCA
64 GGATCATTTTGTTAGCA
96322201 TAACATA-T-TTT-TTTTTGGAAATGATTTGTTGAAATGGTTGGTTAACATCTTACAACTATAGG
1 TAACATATTGTTTGTTTTTGGAAATGATTTGTTGAAATGGTTGGTTAACATCTTACAACTATAGG
*
96322263 ATCATTTTGTTAGTA
66 ATCATTTTGTTAGCA
*
96322278 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAA
1 TAACATA--TTGTTTGTTTTTGGAAATGATTTGTTGAAA
96322317 GATGTATACC
Statistics
Matches: 106, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
77 69 0.65
78 3 0.03
79 1 0.01
80 1 0.01
81 3 0.03
82 29 0.27
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.48
Consensus pattern (80 bp):
TAACATATTGTTTGTTTTTGGAAATGATTTGTTGAAATGGTTGGTTAACATCTTACAACTATAGG
ATCATTTTGTTAGCA
Found at i:96324901 original size:30 final size:30
Alignment explanation
Indices: 96324867--96324927 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
96324857 TCCTTAACTC
96324867 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
96324897 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
96324927 A
1 A
96324928 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:96332099 original size:18 final size:18
Alignment explanation
Indices: 96332059--96332100 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
96332049 TTGTTTGTAT
96332059 ATTTTTTTCATTTTATAA
1 ATTTTTTTCATTTTATAA
* *
96332077 ATTTTCTTCCTTTT-TAA
1 ATTTTTTTCATTTTATAA
96332094 ATTTTTT
1 ATTTTTT
96332101 AATTAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTCATTTTATAA
Found at i:96333662 original size:4 final size:4
Alignment explanation
Indices: 96333653--96333677 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
96333643 AATTTATCTC
96333653 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
96333678 CAACAGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:96336817 original size:27 final size:27
Alignment explanation
Indices: 96336787--96336848 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
96336777 TATTTCCGCC
* *
96336787 AATCTGAAAGAACAGTATATATGGTGA
1 AATCTGAAAGAACAATATATATGGCGA
* *
96336814 AATCTGAACGAACAATATATGTGGCGA
1 AATCTGAAAGAACAATATATATGGCGA
*
96336841 ACTCTGAA
1 AATCTGAA
96336849 GGAATGGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (27 bp):
AATCTGAAAGAACAATATATATGGCGA
Found at i:96340441 original size:30 final size:30
Alignment explanation
Indices: 96340406--96340466 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
96340396 TGTCGACACA
*
96340406 GGCATGTGTCTAGGCCTT-GGTAGACACATG
1 GGCATGTGTCAAGGCCTTCGGT-GACACATG
*
96340436 GGCATGTGTCAAGGCCTTCTGTGACACATG
1 GGCATGTGTCAAGGCCTTCGGTGACACATG
96340466 G
1 G
96340467 TCTACTCCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.20, C:0.21, G:0.33, T:0.26
Consensus pattern (30 bp):
GGCATGTGTCAAGGCCTTCGGTGACACATG
Found at i:96343251 original size:47 final size:47
Alignment explanation
Indices: 96343197--96343317 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
96343187 TATTTGAATA
* *
96343197 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
96343244 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
96343291 AATGTGAAAGTGTATATATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
96343318 TCCCGAAGGG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:96350133 original size:47 final size:46
Alignment explanation
Indices: 96350058--96350427 Score: 171
Period size: 47 Copynumber: 7.8 Consensus size: 46
96350048 TGGGTTATGT
* *
96350058 GAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGTCTTGAGAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGG-CTAGAGAC
* * * * * *
96350106 GAGGGCTAGTGTAAGA-CGTGTCTGGGACATGCATCAGCCACATTAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTAGA-GAC
* * * * *
96350152 AATAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGCGTAGAGAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TAGAGAC
* * * *
96350200 GAGTGCTAGTGTAAGA-CGTGTCTAGGACATGCATCGGCCTCA-ATGAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-CT-AGA-GAC
* * * * * **
96350247 G-GTAACTGGTGTAAGA-CGTGTCTGGGACATGCCTCTGCTA-AGGT
1 GAG-AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTAGAGAC
** * * * * * *
96350291 TCGTGCTAGTGTAAGA-AATGTATGGGACATGCATCAGCACTTATACAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATC-G-GC-TAGAGAC
* * * *
96350339 GAGAGCTAGTGTAAGACCATGTCTGCGATATAGCATCGACCTCA-ATGAA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCG-GCT-AGA-GAC
* * * *
96350388 GATAGCCAGTGTAAAACCATGTTTGGGACATGGCATCGGC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
96350428 AACTTAACCT
Statistics
Matches: 240, Mismatches: 65, Indels: 34
0.71 0.19 0.10
Matches are distributed among these distances:
44 27 0.11
45 5 0.02
46 33 0.14
47 72 0.30
48 51 0.21
49 47 0.20
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTAGAGAC
Found at i:96350175 original size:94 final size:94
Alignment explanation
Indices: 96350061--96350234 Score: 278
Period size: 94 Copynumber: 1.9 Consensus size: 94
96350051 GTTATGTGAG
* *
96350061 AGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGTC-TTGAGACGAGGGCTAGTGTAAGACGT
1 AGCCAGTGTAAGACCATGTCTGAGACATAGCATCGG-CGTAGAGACGAGGGCTAGTGTAAGACGT
*
96350125 GTCTGGGACATGCATCAGCCACATTACAAT
65 GTCTAGGACATGCATCAGCCACATTACAAT
* * *
96350155 AGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGCGTAGAGATGAGTGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGAGACATAGCATCGGCGTAGAGACGAGGGCTAGTGTAAGACGTG
96350220 TCTAGGACATGCATC
66 TCTAGGACATGCATC
96350235 GGCCTCAATG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 1 0.01
94 72 0.99
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGAGACATAGCATCGGCGTAGAGACGAGGGCTAGTGTAAGACGTG
TCTAGGACATGCATCAGCCACATTACAAT
Found at i:96351276 original size:55 final size:55
Alignment explanation
Indices: 96351161--96351277 Score: 182
Period size: 55 Copynumber: 2.1 Consensus size: 55
96351151 CTTAAACTTT
*
96351161 TAAGTCAGTATTGTCCATGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTA
1 TAAGTCAGTATTGTCCATGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCTA
* * *
96351216 TAAGTCAGTATTGTCCATGGGTAGGCCACACGGGCGTGTGTCATGGTCGTGCCCTA
1 TAAGTCAGTATTGTCCATGGGTAGGCCACACGGGCGTGTGCCATAGCCGTG-CCTA
96351272 -AAGTCA
1 TAAGTCA
96351278 ATGTTGCACA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
55 54 0.95
56 3 0.05
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.26
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCATGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCTA
Found at i:96354544 original size:15 final size:16
Alignment explanation
Indices: 96354511--96354544 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
96354501 TATATTAACC
96354511 TTTTAACTTAAACATT
1 TTTTAACTTAAACATT
96354527 TTTTAACTTAAACATT
1 TTTTAACTTAAACATT
96354543 TT
1 TT
96354545 AAACACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTAACTTAAACATT
Found at i:96360921 original size:61 final size:60
Alignment explanation
Indices: 96360847--96360964 Score: 182
Period size: 61 Copynumber: 1.9 Consensus size: 60
96360837 AATTTAATAT
*
96360847 TTAATTTAATTTAATAGTTATCTTGATTGTATTTTACTAATTTAATATTAATGTGAGATA
1 TTAATTTAATTTAATAGTTATCTTGATAGTATTTTACTAATTTAATATTAATGTGAGATA
* * * *
96360907 TTAATTTTGATTTAATATTTATCTTTATAGTATTTTATTAATTTAATATTAATGTGAG
1 TTAA-TTTAATTTAATAGTTATCTTGATAGTATTTTACTAATTTAATATTAATGTGAG
96360965 TAATTTCAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
60 4 0.08
61 48 0.92
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (60 bp):
TTAATTTAATTTAATAGTTATCTTGATAGTATTTTACTAATTTAATATTAATGTGAGATA
Found at i:96360954 original size:31 final size:31
Alignment explanation
Indices: 96360852--96360956 Score: 99
Period size: 31 Copynumber: 3.4 Consensus size: 31
96360842 AATATTTAAT
* *
96360852 TTAATTTAATAGTTATCTTGATTGTATTTTA
1 TTAATTTAATATTTATCTTGATAGTATTTTA
* * * *
96360883 CTAATTTAATATTAAT-GTGAGA-TATTAATT-
1 TTAATTTAATATTTATCTTGATAGTATT--TTA
* *
96360913 TTGATTTAATATTTATCTTTATAGTATTTTA
1 TTAATTTAATATTTATCTTGATAGTATTTTA
96360944 TTAATTTAATATT
1 TTAATTTAATATT
96360957 AATGTGAGTA
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
29 4 0.07
30 18 0.32
31 30 0.54
32 4 0.07
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (31 bp):
TTAATTTAATATTTATCTTGATAGTATTTTA
Found at i:96363557 original size:17 final size:18
Alignment explanation
Indices: 96363520--96363571 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
96363510 GTGCGATGAC
96363520 AAGAGAAGAAGGAATGAAGAA
1 AAGAGAA-AA-GAA-GAAGAA
96363541 AAGA-AAAAGAAGAAGAA
1 AAGAGAAAAGAAGAAGAA
96363558 AAGAGAAAAGAAGA
1 AAGAGAAAAGAAGA
96363572 GGGAGAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.33
18 12 0.40
19 2 0.07
20 2 0.07
21 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (18 bp):
AAGAGAAAAGAAGAAGAA
Found at i:96363569 original size:24 final size:25
Alignment explanation
Indices: 96363523--96363569 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96363513 CGATGACAAG
* *
96363523 AGAAGAAGGAATGAAGAAAAGAAAA
1 AGAAGAAGAAAAGAAGAAAAGAAAA
96363548 AGAAGAAGAAAAG-AGAAAAGAA
1 AGAAGAAGAAAAGAAGAAAAGAA
96363570 GAGGGAGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (25 bp):
AGAAGAAGAAAAGAAGAAAAGAAAA
Found at i:96366555 original size:18 final size:19
Alignment explanation
Indices: 96366532--96366572 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
96366522 TAAATTATAA
* *
96366532 TTATTTTAA-TTTTTAATT
1 TTATTTCAACTTTTAAATT
96366550 TTATTTCAACTTTTAAATT
1 TTATTTCAACTTTTAAATT
96366569 TTAT
1 TTAT
96366573 AATTTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATTTCAACTTTTAAATT
Found at i:96366568 original size:19 final size:18
Alignment explanation
Indices: 96366532--96366583 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 18
96366522 TAAATTATAA
* *
96366532 TTATTTTAATTTTTAATT
1 TTATTTCAATTTTAAATT
96366550 TTATTTCAACTTTTAAATT
1 TTATTTCAA-TTTTAAATT
96366569 TTA--T-AATTTTAAATT
1 TTATTTCAATTTTAAATT
96366584 AAATATTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 9 0.29
16 2 0.06
17 1 0.03
18 8 0.26
19 11 0.35
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATTTCAATTTTAAATT
Found at i:96368055 original size:24 final size:24
Alignment explanation
Indices: 96368028--96368086 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
96368018 CCTTCAACAT
*
96368028 GTGGAGGTTTACCCCCTGAATGTC
1 GTGGAGGTTTACCACCTGAATGTC
* *
96368052 GTGGAGGTTTACCACCTGAGTGTT
1 GTGGAGGTTTACCACCTGAATGTC
96368076 GTGGAGGTTTA
1 GTGGAGGTTTA
96368087 TGTGTGCCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGGAGGTTTACCACCTGAATGTC
Found at i:96368132 original size:171 final size:172
Alignment explanation
Indices: 96367768--96368188 Score: 553
Period size: 171 Copynumber: 2.4 Consensus size: 172
96367758 CACTTAAGAG
*
96367768 GTGTCTATGAGGAGGTTTAGGTTCATGAGGTACTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
1 GTGTCTATGAGGAGGTTTAGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
* ** * * ** * *
96367833 CGGGGAATGGTTTCATGGGTGGCTTACCGTCGGGGAATCCTTCAACATGTGGAGGTTTACCCCCT
66 CAGGGAATCCTTACATGGGAGGCTTACCG-CCCGGAAT-CGT--ACA-GTGGAGGTTTACCACCT
* * * *
96367898 GAGTGTTGTGGAGGCTTATGTGTGTCCTCAACTTCGACATTCAATAG
126 GAGTGTTGTGGAGGCTTATGTGTGCCCTCAACTTCCACACTCAATAA
*
96367945 GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
1 GTGTCTATGAGGAGGTTTAGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
* *
96368010 CAGGGAATCCTTCAACATGTGGAGGTTTACC-CCCTGAAT-GT-C-GTGGAGGTTTACCACCTGA
66 CAGGGAATCCTT--ACATG-GGAGGCTTACCGCCCGGAATCGTACAGTGGAGGTTTACCACCTGA
*
96368071 GTGTTGTGGAGGTTTATGTGTGCCCTCAACTTCCACACTCAATAA
128 GTGTTGTGGAGGCTTATGTGTGCCCTCAACTTCCACACTCAATAA
* * *
96368116 GTGTCTATGAGGAGGTTTAGGTTCATGAGGTGCTCCCTTTTCATTACCCTTAGATGGTTTGTCAC
1 GTGTCTATGAGGAGGTTTAGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
96368181 CAGGGAAT
66 CAGGGAAT
96368189 GGCTTCATGG
Statistics
Matches: 219, Mismatches: 22, Indels: 12
0.87 0.09 0.05
Matches are distributed among these distances:
171 127 0.58
173 1 0.00
176 1 0.00
177 72 0.33
178 5 0.02
179 4 0.02
180 9 0.04
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (172 bp):
GTGTCTATGAGGAGGTTTAGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
CAGGGAATCCTTACATGGGAGGCTTACCGCCCGGAATCGTACAGTGGAGGTTTACCACCTGAGTG
TTGTGGAGGCTTATGTGTGCCCTCAACTTCCACACTCAATAA
Found at i:96368262 original size:24 final size:24
Alignment explanation
Indices: 96368229--96368287 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
96368219 CCCTCAACAT
* *
96368229 GTGGAGGTTTACCTCCCGAGTGTC
1 GTGGAGGTTTACCACCCGAGTATC
* *
96368253 TTGGAGGTTTACCACCTGAGTATC
1 GTGGAGGTTTACCACCCGAGTATC
96368277 GTGGAGGTTTA
1 GTGGAGGTTTA
96368288 TGTGTGTCCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (24 bp):
GTGGAGGTTTACCACCCGAGTATC
Found at i:96372241 original size:26 final size:26
Alignment explanation
Indices: 96372212--96372293 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 26
96372202 TGGTACAAAT
*
96372212 TGATAATGGATTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCTA
96372238 TGATAATGGGTTAGGTAAATGTT-TCA
1 TGATAATGGGTTAGGTAAATGTTCT-A
* *
96372264 TTATAATGGGTTAAGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCTA
96372290 TGAT
1 TGAT
96372294 GGGAATTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.02
26 48 0.96
27 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCTA
Found at i:96377818 original size:34 final size:35
Alignment explanation
Indices: 96377769--96377839 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 35
96377759 CGGAGTTTGT
96377769 AGGGAAAGGTCTGACATGCCAGCAAGTGAAAGCTG
1 AGGGAAAGGTCTGACATGCCAGCAAGTGAAAGCTG
96377804 AGGGAAA-GTCTGACATGCCAGCAAGTGAAAGCTG
1 AGGGAAAGGTCTGACATGCCAGCAAGTGAAAGCTG
96377838 AG
1 AG
96377840 CAACAATTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.35, C:0.17, G:0.34, T:0.14
Consensus pattern (35 bp):
AGGGAAAGGTCTGACATGCCAGCAAGTGAAAGCTG
Found at i:96385824 original size:21 final size:22
Alignment explanation
Indices: 96385800--96385842 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
96385790 TTACTTTTAA
96385800 AAAATATTATAATATT-AATAT
1 AAAATATTATAATATTCAATAT
*
96385821 AAAATATTATAATTTTCAATAT
1 AAAATATTATAATATTCAATAT
96385843 GATTAAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATATTATAATATTCAATAT
Found at i:96385959 original size:16 final size:14
Alignment explanation
Indices: 96385933--96385973 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
96385923 TTTCAATTTT
96385933 ATTTT-AATAATAA
1 ATTTTAAATAATAA
96385946 ATTTTGAAAATAAT-A
1 ATTTT--AAATAATAA
96385961 ATTTTAAATAATA
1 ATTTTAAATAATA
96385974 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 12 0.50
15 6 0.25
16 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
ATTTTAAATAATAA
Found at i:96389996 original size:31 final size:31
Alignment explanation
Indices: 96389958--96390021 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
96389948 CCTAGGAGAG
*
96389958 AGAGAAGAAAATTTCAAGGTTTAATTGGGTA
1 AGAGAAGAAAATTTCAAGGCTTAATTGGGTA
*
96389989 AGAGAAGAAACTTTCAAGGCTTAATTGGGTA
1 AGAGAAGAAAATTTCAAGGCTTAATTGGGTA
96390020 AG
1 AG
96390022 TTTCCTTGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.27
Consensus pattern (31 bp):
AGAGAAGAAAATTTCAAGGCTTAATTGGGTA
Found at i:96390958 original size:57 final size:56
Alignment explanation
Indices: 96390880--96391091 Score: 185
Period size: 57 Copynumber: 3.7 Consensus size: 56
96390870 AATTTCTCTC
* * *
96390880 GAGCATATGTTACA-ATTAGGATTTAGCTTGGACTAGTAATACTAATTGAGTTCTTCT
1 GAGCATACGTTACATA-AAGGATTTAGCCTGGACTAGTAATACTAATT-AGTTCTTCT
* * * ** * ** * *
96390937 GAGCATACATTACATAAAGGATTTAGCCCGAACGGGTAATCCTGGTATAATTCCTCTT
1 GAGCATACGTTACATAAAGGATTTAGCCTGGACTAGTAATACTAAT-TAGTTCTTC-T
* * * * *
96390995 GAGTATATGTTACA-ATTAGGATTTAACCTAGACTAGTAATACTAATTTAGTTCTTCT
1 GAGCATACGTTACATA-AAGGATTTAGCCTGGACTAGTAATACTAA-TTAGTTCTTCT
*
96391052 GAGCATACGTTACATAAAGGATTTAGCCTGGACTGGTAAT
1 GAGCATACGTTACATAAAGGATTTAGCCTGGACTAGTAAT
96391092 CCTGTAATAC
Statistics
Matches: 115, Mismatches: 34, Indels: 12
0.71 0.21 0.07
Matches are distributed among these distances:
57 73 0.63
58 41 0.36
59 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (56 bp):
GAGCATACGTTACATAAAGGATTTAGCCTGGACTAGTAATACTAATTAGTTCTTCT
Found at i:96391031 original size:115 final size:115
Alignment explanation
Indices: 96390837--96391095 Score: 410
Period size: 115 Copynumber: 2.3 Consensus size: 115
96390827 CTCATTATAG
*
96390837 AAAGGATTTAGCCCGAACGGGTAATCCTGATATAATTTCTCTCGAGCATATGTTACAATTAGGAT
1 AAAGGATTTAGCCCGAACGGGTAATCCTGATATAATTCCTCTCGAGCATATGTTACAATTAGGAT
* * *
96390902 TTAGCTTGGACTAGTAATACTAATTGAGTTCTTCTGAGCATACATTACAT
66 TTAACCTAGACTAGTAATACTAATTGAGTTCTTCTGAGCATACATTACAT
* * *
96390952 AAAGGATTTAGCCCGAACGGGTAATCCTGGTATAATTCCTCTTGAGTATATGTTACAATTAGGAT
1 AAAGGATTTAGCCCGAACGGGTAATCCTGATATAATTCCTCTCGAGCATATGTTACAATTAGGAT
* *
96391017 TTAACCTAGACTAGTAATACTAATTTAGTTCTTCTGAGCATACGTTACAT
66 TTAACCTAGACTAGTAATACTAATTGAGTTCTTCTGAGCATACATTACAT
* * *
96391067 AAAGGATTTAGCCTGGACTGGTAATCCTG
1 AAAGGATTTAGCCCGAACGGGTAATCCTG
96391096 TAATACAATA
Statistics
Matches: 132, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 132 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (115 bp):
AAAGGATTTAGCCCGAACGGGTAATCCTGATATAATTCCTCTCGAGCATATGTTACAATTAGGAT
TTAACCTAGACTAGTAATACTAATTGAGTTCTTCTGAGCATACATTACAT
Found at i:96396146 original size:23 final size:23
Alignment explanation
Indices: 96396120--96396295 Score: 203
Period size: 23 Copynumber: 7.7 Consensus size: 23
96396110 CAAAGTACTA
* * *
96396120 CACTGTAATATAGCTGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
*
96396143 CACTGTAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* * *
96396166 CACTGTATTGCAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
96396189 CATTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
96396212 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* *
96396235 CACTGTATTGTAGCTGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
96396258 CACTG-AGATGTAGTCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
96396281 CACTGTATTGTAGCC
1 CACTGTAATGTAGCC
96396296 TATAGATTCC
Statistics
Matches: 129, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
22 2 0.02
23 125 0.97
24 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:96397892 original size:14 final size:15
Alignment explanation
Indices: 96397873--96397902 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
96397863 GTTTATTATA
96397873 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
96397887 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
96397902 T
1 T
96397903 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:96399923 original size:43 final size:43
Alignment explanation
Indices: 96399792--96399940 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 43
96399782 GGCTTTGAGC
* * *
96399792 CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCAGTGAAATGATATCAGACTTAAAGGT
* * ** *** *
96399835 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCA-AGCTCCGA-GC
1 CTAGCAGGC-GTAATGCCAGTGAAATGA-TATCAGA-CTTAAAGGT
96399876 CTAGCAGGCGTAATGCCAGTGAAATGATATCAGACTTAAAGGT
1 CTAGCAGGCGTAATGCCAGTGAAATGATATCAGACTTAAAGGT
* *
96399919 CTAGCAGGCTTATTGCCAGTGA
1 CTAGCAGGCGTAATGCCAGTGA
96399941 TGAAATCAGG
Statistics
Matches: 79, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
40 3 0.04
41 16 0.20
42 21 0.27
43 36 0.46
44 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
CTAGCAGGCGTAATGCCAGTGAAATGATATCAGACTTAAAGGT
Found at i:96401429 original size:30 final size:30
Alignment explanation
Indices: 96401390--96401455 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
96401380 CATGGATAGC
*
96401390 CACATGGGCGTGTGTCTAGGCCGTGTGTGA
1 CACACGGGCGTGTGTCTAGGCCGTGTGTGA
96401420 CACACGGGCGTGTGTCTAGGCCGTGTGTGA
1 CACACGGGCGTGTGTCTAGGCCGTGTGTGA
96401450 CACACG
1 CACACG
96401456 ATCACACTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.15, C:0.24, G:0.38, T:0.23
Consensus pattern (30 bp):
CACACGGGCGTGTGTCTAGGCCGTGTGTGA
Found at i:96406426 original size:23 final size:23
Alignment explanation
Indices: 96406400--96406621 Score: 261
Period size: 23 Copynumber: 9.7 Consensus size: 23
96406390 CAAAGTGCCA
* * *
96406400 CACTGTAATATAGCTGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
*
96406423 CACTGTAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
96406446 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
96406469 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
96406492 CACTG-AGATATAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
96406515 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
96406538 CACTG-AGATGTAGCTGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* * *
96406561 CACTATATTGTAGCTGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
96406584 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
96406607 CACTGTATTGTAGCC
1 CACTGTAATGTAGCC
96406622 TATAGATTCC
Statistics
Matches: 171, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.02
23 165 0.96
24 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:96406467 original size:46 final size:46
Alignment explanation
Indices: 96406416--96406621 Score: 306
Period size: 46 Copynumber: 4.5 Consensus size: 46
96406406 AATATAGCTG
* ** *
96406416 AAGCTATCACTGTAACGTAGCCGAAGCTACCACTGTA-TTGTAGCCA
1 AAGCTACCACTGTATTGTAGCCGAAGCTACCACTG-AGATGTAGCCA
*
96406462 AAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATATAGCCA
1 AAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCA
**
96406508 AAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCTG
1 AAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCA
* * *
96406554 AAGCTACCACTATATTGTAGCTGAAGCTACCACTGAGATGTAGCCG
1 AAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCA
96406600 AAGCTACCACTGTATTGTAGCC
1 AAGCTACCACTGTATTGTAGCC
96406622 TATAGATTCC
Statistics
Matches: 146, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 145 0.99
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (46 bp):
AAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCA
Found at i:96412993 original size:46 final size:42
Alignment explanation
Indices: 96412896--96413039 Score: 109
Period size: 40 Copynumber: 3.4 Consensus size: 42
96412886 TGATTATGTT
* * *
96412896 TGGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAA
1 TGGCACTTAGTGTGCGAATCAAAATAGCTTCGGCTATATAAA
* *
96412938 --GCACATAGTGTGTGAATCAAAATAGCTTCGGCTATATATATATA
1 TGGCACTTAGTGTGCGAATCAAAATAGCTTCGGC--TATATA-A-A
* * * * *
96412982 TGGCACTTAGTGTGC-AAGACTGAGATAGCTTTGGCTAT-GAAA
1 TGGCACTTAGTGTGCGAA-TC-AAAATAGCTTCGGCTATATAAA
96413024 -GGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
96413040 GATATCGAGT
Statistics
Matches: 81, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
40 27 0.33
41 14 0.17
42 8 0.10
43 2 0.02
44 2 0.02
45 5 0.06
46 12 0.15
47 11 0.14
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TGGCACTTAGTGTGCGAATCAAAATAGCTTCGGCTATATAAA
Found at i:96419110 original size:39 final size:39
Alignment explanation
Indices: 96419055--96419341 Score: 292
Period size: 39 Copynumber: 7.3 Consensus size: 39
96419045 GTGTTTCCCC
* *
96419055 ATGTGGTGGTTCCTCTCCCCTACCACCGGGTCCAGGGTG
1 ATGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTG
* *
96419094 GTGTGGTGGCTCCTCTCCCTCCTACCACCAGGTCCGGGGTG
1 ATGTGGTGGCTCCTCT-CC-CCTACCACCAGGTCCAGGGTG
*
96419135 ATGTGGTGGCTCCTCTCCTCTACCACCAGGTCC-GAGGTG
1 ATGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAG-GGTG
* * **
96419174 ATGTGGTGGCTCATC-CCCCATACCACTAGGTCTGGGGTG
1 ATGTGGTGGCTCCTCTCCCC-TACCACCAGGTCCAGGGTG
* * * *
96419213 GTGTGGTGGCTTCTCTCTCCTACCACCAGGTCCGGGGTG
1 ATGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTG
* * * * *
96419252 ATGTAGTGGTTCAT-TCCCCATACCACTAGGTTCAGGGTG
1 ATGTGGTGGCTCCTCTCCCC-TACCACCAGGTCCAGGGTG
* * * *
96419291 GTGTGGTGGCTCATCCCCCCTACCACTAGGTCCAGGGTG
1 ATGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTG
* *
96419330 TTGGGGTGGCTC
1 ATGTGGTGGCTC
96419342 ATTATCGTGG
Statistics
Matches: 208, Mismatches: 32, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
38 8 0.04
39 154 0.74
40 12 0.06
41 34 0.16
ACGTcount: A:0.12, C:0.31, G:0.31, T:0.26
Consensus pattern (39 bp):
ATGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTG
Found at i:96419276 original size:117 final size:118
Alignment explanation
Indices: 96419055--96419341 Score: 357
Period size: 117 Copynumber: 2.4 Consensus size: 118
96419045 GTGTTTCCCC
* * **
96419055 ATGTGGTGGTTCCTCTCCCC-TACCACCGGGTCCAGGGTGGTGTGGTGGCTCCTCTCCCTCCTAC
1 ATGTGGTGGCTCATC-CCCCATACCACTAGGTCCAGGGTGGTGTGGTGGCT-CTCTCCCTCCTAC
* * *
96419119 CACCAGGTCCGGGGTGATGTGGTGGCTCCTCTCCTCTACCACCAGGTCC-GAGGTG
64 CACCAGGTCCGGGGTGATGTAGTGGCTCATCTCCCCTACCACCAGGTCCAG-GGTG
** *
96419174 ATGTGGTGGCTCATCCCCCATACCACTAGGTCTGGGGTGGTGTGGTGGCT-TCTCTCTCCTACCA
1 ATGTGGTGGCTCATCCCCCATACCACTAGGTCCAGGGTGGTGTGGTGGCTCTCTCCCTCCTACCA
* * *
96419238 CCAGGTCCGGGGTGATGTAGTGGTTCAT-TCCCCATACCACTAGGTTCAGGGTG
66 CCAGGTCCGGGGTGATGTAGTGGCTCATCTCCCC-TACCACCAGGTCCAGGGTG
* * * *
96419291 GTGTGGTGGCTCATCCCCCCTACCACTAGGTCCAGGGTGTTGGGGTGGCTC
1 ATGTGGTGGCTCATCCCCCATACCACTAGGTCCAGGGTGGTGTGGTGGCTC
96419342 ATTATCGTGG
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
116 4 0.03
117 97 0.67
118 5 0.03
119 39 0.27
ACGTcount: A:0.12, C:0.31, G:0.31, T:0.26
Consensus pattern (118 bp):
ATGTGGTGGCTCATCCCCCATACCACTAGGTCCAGGGTGGTGTGGTGGCTCTCTCCCTCCTACCA
CCAGGTCCGGGGTGATGTAGTGGCTCATCTCCCCTACCACCAGGTCCAGGGTG
Found at i:96419344 original size:78 final size:78
Alignment explanation
Indices: 96419056--96419344 Score: 339
Period size: 78 Copynumber: 3.7 Consensus size: 78
96419046 TGTTTCCCCA
* * * * *
96419056 TGTGGTGGTTCCTCTCCCCTACCACCGGGTCCAGGGTGGTGTGGTGGCTCCTCTCCCTCCTACCA
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGATGTGGTGGCTCAT-TCCC-CATACCA
* * *
96419121 CCAGGTCCGGGGTGA
64 CTAGGTTCGGGGTGG
* *
96419136 TGTGGTGGCTCCTCTCCTCTACCACCAGGTCC-GAGGTGATGTGGTGGCTCATCCCCCATACCAC
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAG-GGTGATGTGGTGGCTCATTCCCCATACCAC
96419200 TAGG-TCTGGGGTGG
65 TAGGTTC-GGGGTGG
* * * * *
96419214 TGTGGTGGCTTCTCTCTCCTACCACCAGGTCCGGGGTGATGTAGTGGTTCATTCCCCATACCACT
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGATGTGGTGGCTCATTCCCCATACCACT
*
96419279 AGGTTCAGGGTGG
66 AGGTTCGGGGTGG
* * * * *
96419292 TGTGGTGGCTCATCCCCCCTACCACTAGGTCCAGGGTGTTGGGGTGGCTCATT
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGATGTGGTGGCTCATT
96419345 ATCGTGGTTA
Statistics
Matches: 178, Mismatches: 27, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
77 1 0.01
78 125 0.70
79 7 0.04
80 45 0.25
ACGTcount: A:0.12, C:0.30, G:0.31, T:0.27
Consensus pattern (78 bp):
TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGATGTGGTGGCTCATTCCCCATACCACT
AGGTTCGGGGTGG
Found at i:96426246 original size:28 final size:28
Alignment explanation
Indices: 96426207--96426261 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
96426197 AAATTGTAAG
96426207 AAAAACTCGCTTAAACATGCTCAAAGTA
1 AAAAACTCGCTTAAACATGCTCAAAGTA
96426235 AAAAACTCGCTTAAACATGCTCAAAGT
1 AAAAACTCGCTTAAACATGCTCAAAGT
96426262 GATGCCCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.22, G:0.11, T:0.22
Consensus pattern (28 bp):
AAAAACTCGCTTAAACATGCTCAAAGTA
Found at i:96438539 original size:35 final size:36
Alignment explanation
Indices: 96438500--96438622 Score: 121
Period size: 35 Copynumber: 3.5 Consensus size: 36
96438490 AATATGCACA
* *
96438500 TTCAAGATAA-CTTCACATATAACCGAGTATACAAG
1 TTCAATATAAGCTTCACATATAACCGAATATACAAG
* * *
96438535 TTCAATATAAGC-TCACATGTAATCGAATACTA-AAA
1 TTCAATATAAGCTTCACATATAACCGAATA-TACAAG
* * * *
96438570 TTCAATATAA-CCTCAAATACAGCCGAATATACAAG
1 TTCAATATAAGCTTCACATATAACCGAATATACAAG
96438605 TTCAATATAAGCTT-ACAT
1 TTCAATATAAGCTTCACAT
96438623 GTACTTACCT
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
34 3 0.04
35 62 0.89
36 5 0.07
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.28
Consensus pattern (36 bp):
TTCAATATAAGCTTCACATATAACCGAATATACAAG
Found at i:96445742 original size:35 final size:34
Alignment explanation
Indices: 96445703--96445816 Score: 113
Period size: 35 Copynumber: 3.3 Consensus size: 34
96445693 TAAGATAACT
*
96445703 TCACATATAACCAAGTATACAAGTTCAATATAAGC
1 TCACATGTAACCAA-TATACAAGTTCAATATAAGC
* * *
96445738 TCACATGTAATCGAATACTA-AAATTCAATATAACC
1 TCACATGTAA-CCAATA-TACAAGTTCAATATAAGC
* * *
96445773 TCATATGCAGCCAAATATACAAGTTCAATATAAGC
1 TCACATGTAACC-AATATACAAGTTCAATATAAGC
*
96445808 TTACATGTA
1 TCACATGTA
96445817 CTTACCTATG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
34 3 0.05
35 54 0.87
36 5 0.08
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (34 bp):
TCACATGTAACCAATATACAAGTTCAATATAAGC
Found at i:96455499 original size:54 final size:54
Alignment explanation
Indices: 96455417--96455537 Score: 215
Period size: 54 Copynumber: 2.2 Consensus size: 54
96455407 ACTCAGTTTT
*
96455417 ATAACTAAAATTATTGCAATAAAGAATAAAAAATATATCAAATTATTGGAAGAA
1 ATAACTAAAATTATTGCAATAAAGAATAAAAAATATATCAAATTACTGGAAGAA
* *
96455471 ATAACTAAAATTATTGCAATAAAGAATAAAAAGTATATCAAATTACTGTAAGAA
1 ATAACTAAAATTATTGCAATAAAGAATAAAAAATATATCAAATTACTGGAAGAA
96455525 ATAACTAAAATTA
1 ATAACTAAAATTA
96455538 AGTTGACTTT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (54 bp):
ATAACTAAAATTATTGCAATAAAGAATAAAAAATATATCAAATTACTGGAAGAA
Found at i:96455710 original size:16 final size:16
Alignment explanation
Indices: 96455689--96455719 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96455679 TTCAATAAAA
*
96455689 TATTTTATAATATTTT
1 TATTTTAAAATATTTT
96455705 TATTTTAAAATATTT
1 TATTTTAAAATATTT
96455720 ATAAATAGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTTAAAATATTTT
Found at i:96460496 original size:31 final size:31
Alignment explanation
Indices: 96460451--96460510 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
96460441 AATGTGCATG
96460451 ATTAAATCAAAATTAAAATTTCAAGTATACA
1 ATTAAATCAAAATTAAAATTTCAAGTATACA
* * * * *
96460482 ATTAATTCACAATTAGAGTTTCAGGTATA
1 ATTAAATCAAAATTAAAATTTCAAGTATA
96460511 TACTTGCACC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (31 bp):
ATTAAATCAAAATTAAAATTTCAAGTATACA
Found at i:96461675 original size:19 final size:18
Alignment explanation
Indices: 96461638--96461696 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
96461628 TATAAATTTT
*
96461638 AAATATAAAATATTCATA
1 AAATATAAAATACTCATA
* *
96461656 ATTATATAAAATACTGATA
1 A-AATATAAAATACTCATA
* *
96461675 AAATATAAAAAAATCATA
1 AAATATAAAATACTCATA
96461693 AAAT
1 AAAT
96461697 TAATGTACAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
18 18 0.55
19 15 0.45
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATATAAAATACTCATA
Found at i:96462260 original size:11 final size:11
Alignment explanation
Indices: 96462237--96462269 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
96462227 AAAAATATAC
96462237 AAATTAG-AAA
1 AAATTAGAAAA
96462247 AAATTAGAAAA
1 AAATTAGAAAA
*
96462258 AAATTATAAAA
1 AAATTAGAAAA
96462269 A
1 A
96462270 TCATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (11 bp):
AAATTAGAAAA
Found at i:96462268 original size:20 final size:21
Alignment explanation
Indices: 96462245--96462289 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
96462235 ACAAATTAGA
*
96462245 AAAAATTAGAAAAAAA-TTAT
1 AAAAATCAGAAAAAAATTTAT
*
96462265 AAAAATCATAAAAAAATTTAT
1 AAAAATCAGAAAAAAATTTAT
96462286 AAAA
1 AAAA
96462290 TTTTATGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAAATCAGAAAAAAATTTAT
Found at i:96466804 original size:100 final size:100
Alignment explanation
Indices: 96466631--96466960 Score: 511
Period size: 100 Copynumber: 3.3 Consensus size: 100
96466621 TATTGTGAGG
96466631 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
96466696 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
96466731 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
96466796 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* * * ** * *
96466831 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGGTTAGGTCACTTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT-GGTCGCATGTGTAGTAC
* * * * * *
96466896 AAAGTGTAGGCTACTACGTGTACCGGATAA-TT-GG
65 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
*
96466930 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
96466961 TGCGTACCAG
Statistics
Matches: 215, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
99 31 0.14
100 144 0.67
101 40 0.19
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:96466916 original size:26 final size:26
Alignment explanation
Indices: 96466837--96466917 Score: 64
Period size: 25 Copynumber: 3.2 Consensus size: 26
96466827 TCGATCACGT
* *
96466837 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACAAAGTGTAGGCTACTAC
* *
96466863 ATGTA-T-CAAA-TGGTTAGG-TCACT-T
1 GTGTAGTACAAAGT-G-TAGGCT-ACTAC
96466887 GTGTAGTACAAAGTGTAGGCTACTAC
1 GTGTAGTACAAAGTGTAGGCTACTAC
96466913 GTGTA
1 GTGTA
96466918 CCGGATAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 16
0.65 0.10 0.25
Matches are distributed among these distances:
23 1 0.02
24 9 0.22
25 15 0.37
26 15 0.37
27 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (26 bp):
GTGTAGTACAAAGTGTAGGCTACTAC
Found at i:96466918 original size:150 final size:150
Alignment explanation
Indices: 96466629--96466968 Score: 452
Period size: 150 Copynumber: 2.3 Consensus size: 150
96466619 TCTATTGTGA
* * * * *
96466629 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAATAATTGGTCGCATGTGTAGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAATAATTGATCACATGTGTAGT
** ** * *
96466693 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTACACGTACCAAATAACTTAGATCACGTGTGTAGTACAAAGTGCAGGCT
96466758 ACTACGTGTACCGAATAATT
131 ACTACGTGTACCGAATAATT
* *
96466778 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-ATAACTTCGATCACGTGTGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAATAA-TT-GATCACATGTGTA
* * ** * * *
96466842 GTACTAAGTGCAGGCTACTACATGTATCAAAT-GGTTAGGTCACTTGTGTAGTACAAAGTGTAGG
64 GTACTAAGTGCAGGCTACTACACGTACCAAATAACTTAGATCACGTGTGTAGTACAAAGTGCAGG
*
96466906 CTACTACGTGTACCGGATAATT
129 CTACTACGTGTACCGAATAATT
96466928 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
96466969 AGACAGCTTC
Statistics
Matches: 166, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
149 39 0.23
150 91 0.55
151 36 0.22
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (150 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAATAATTGATCACATGTGTAGT
ACTAAGTGCAGGCTACTACACGTACCAAATAACTTAGATCACGTGTGTAGTACAAAGTGCAGGCT
ACTACGTGTACCGAATAATT
Found at i:96466968 original size:49 final size:50
Alignment explanation
Indices: 96466629--96466960 Score: 404
Period size: 49 Copynumber: 6.7 Consensus size: 50
96466619 TCTATTGTGA
*
96466629 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTC
* * *
96466678 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-ATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAATAA-TTC
* *
96466729 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTC
* * *
96466778 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-ATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAATAA-TTC
* * * * * ** *
96466829 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGGTTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTC
* * * *
96466879 GGTCACTTGTGTAGTACAAAGTGTAGGCTACTACGTGTACCGGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTC
96466928 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
96466961 TGCGTACCAG
Statistics
Matches: 237, Mismatches: 38, Indels: 16
0.81 0.13 0.05
Matches are distributed among these distances:
49 107 0.45
50 57 0.24
51 73 0.31
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTC
Found at i:96467003 original size:150 final size:150
Alignment explanation
Indices: 96466731--96467006 Score: 403
Period size: 150 Copynumber: 1.8 Consensus size: 150
96466721 ATAACTTCGA
* *
96466731 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTAGTACT
* * * * *
96466796 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCAGACAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCTACT
96466861 ACATGTATCAAATGGTTAGG
131 ACATGTATCAAATGGTTAGG
* * *
96466881 TCACTTGTGTAGTACAAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTAGTACT
* * *
96466946 AAGTGCAGGCTACTATGCGTACCAGACAGCTTCGGCTACAAGTGTG-A-AAATATGTGCAGGC
66 AAGTGCAGGCTACTATGCGTACCAGACAACTTC-GAT-CAAGTGTGTAGAAATAAGTGCAGGC
96467007 AACTGAGTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
150 101 0.91
151 3 0.03
152 7 0.06
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (150 bp):
TCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGACAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCTACT
ACATGTATCAAATGGTTAGG
Found at i:96469607 original size:30 final size:30
Alignment explanation
Indices: 96469573--96469635 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
96469563 ACTTATTTTA
96469573 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
96469603 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
96469633 TTG
1 TTG
96469636 CTTATTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:96470737 original size:2 final size:2
Alignment explanation
Indices: 96470732--96470761 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
96470722 AAAACTCTTT
96470732 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96470762 TTTGGGTGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:96472053 original size:19 final size:19
Alignment explanation
Indices: 96472029--96472067 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
96472019 ACTAGAAAAG
96472029 ATAGAGTAAAAAGTAGCAC
1 ATAGAGTAAAAAGTAGCAC
*
96472048 ATAGAGTGAAAAGTAGCAC
1 ATAGAGTAAAAAGTAGCAC
96472067 A
1 A
96472068 ACATGCTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.23, T:0.15
Consensus pattern (19 bp):
ATAGAGTAAAAAGTAGCAC
Found at i:96475569 original size:14 final size:15
Alignment explanation
Indices: 96475545--96475573 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
96475535 AAACATGCAT
96475545 AAAATGACCAATTTC
1 AAAATGACCAATTTC
96475560 AAAA-GACCAATTTC
1 AAAATGACCAATTTC
96475574 TATTCAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AAAATGACCAATTTC
Found at i:96477026 original size:25 final size:26
Alignment explanation
Indices: 96476992--96477050 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
96476982 TTACTCATAG
96476992 GAGCTGTGAAAT-GAGTTTGC-CACAC
1 GAGCTGTGAAATAG-GTTTGCTCACAC
96477017 GAGCTGTGAAATAGGTTTGCTCACAC
1 GAGCTGTGAAATAGGTTTGCTCACAC
*
96477043 AAGCTGTG
1 GAGCTGTG
96477051 GGTCAAAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
25 18 0.58
26 13 0.42
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
GAGCTGTGAAATAGGTTTGCTCACAC
Found at i:96478889 original size:46 final size:44
Alignment explanation
Indices: 96478776--96478950 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 44
96478766 TGGGTTATTG
* * *
96478776 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGTACTGA-GACGA
1 TGAGCCAGTGTAAGA-CATGTCTGAGACAT-GCA-TCG-ACT-ACGA-GA
* *
96478825 -GAGCTAGTGTAAGACATGTCTGAGACATGCATCAGCCT-CGAGA
1 TGAGCCAGTGTAAGACATGTCTGAGACATGCATC-GACTACGAGA
*
96478868 TGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGA
1 TG--AGCCAGTGTAAGACATGTCTGAGACATGCATCGACTACGAGA
*
96478914 TGAGCCAGTGTAAAACCATGTCT-AGGACATGGCATCG
1 TGAGCCAGTGTAAGA-CATGTCTGA-GACAT-GCATCG
96478951 GCATCCTACC
Statistics
Matches: 109, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
43 2 0.02
44 15 0.14
45 18 0.17
46 47 0.43
47 13 0.12
48 14 0.13
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (44 bp):
TGAGCCAGTGTAAGACATGTCTGAGACATGCATCGACTACGAGA
Found at i:96488949 original size:40 final size:40
Alignment explanation
Indices: 96488917--96489108 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
96488907 CCAACATGAT
* * *
96488917 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
96488957 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
96488997 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
96489037 TGCTCCTT-GGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
96489077 TGCTCCTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
96489109 CTCAATTCTC
Statistics
Matches: 134, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 129 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:96490432 original size:37 final size:37
Alignment explanation
Indices: 96490378--96490478 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
96490368 GCTCAGCCGA
*
96490378 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
96490415 AATCTCCACACGTAGTCATCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
96490452 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
96490479 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:96491269 original size:49 final size:46
Alignment explanation
Indices: 96490597--96492445 Score: 2754
Period size: 47 Copynumber: 38.8 Consensus size: 46
96490587 CCCTTCGGGA
* * * * **
96490597 CTTATCACATTTATACACTATT-ACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCA-TTAGC
* *
96490644 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
*
96490691 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
*
96490738 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
96490785 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96490832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96490879 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96490926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96490973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491020 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491067 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
* *
96491114 CTTATCAC----ATGCACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
96491157 CTTATCACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GC
96491208 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491255 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491302 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491396 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG-C
96491443 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
* *
96491490 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATT-AGC
* *
96491539 CTTATCACATATATACAGTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
* *
96491586 ATTATCACATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491633 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491682 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491731 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491780 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491829 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491878 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491927 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96491976 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
*
96492025 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGC
96492074 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GC
*
96492123 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGC
96492170 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GC
*
96492219 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGC
96492266 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GC
*
96492315 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGC
96492362 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GC
96492411 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
96492446 AGAATCCTAA
Statistics
Matches: 1734, Mismatches: 34, Indels: 68
0.94 0.02 0.04
Matches are distributed among these distances:
43 36 0.02
44 1 0.00
45 3 0.00
46 5 0.00
47 978 0.56
48 9 0.01
49 664 0.38
51 38 0.02
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (46 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGC
Found at i:96501069 original size:40 final size:40
Alignment explanation
Indices: 96501002--96501248 Score: 394
Period size: 40 Copynumber: 6.2 Consensus size: 40
96500992 CCTTCGGAGT
*
96501002 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
96501041 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
96501081 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
96501121 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
96501161 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
96501200 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGGC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
96501240 TTAGCCCGG
1 TTAGCCCGG
96501249 TTATCAATCC
Statistics
Matches: 197, Mismatches: 7, Indels: 7
0.93 0.03 0.03
Matches are distributed among these distances:
38 1 0.01
39 40 0.20
40 156 0.79
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:96506948 original size:50 final size:50
Alignment explanation
Indices: 96506819--96507015 Score: 234
Period size: 50 Copynumber: 3.9 Consensus size: 50
96506809 ATCTATTGCG
* * * *
96506819 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
96506870 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
96506920 AGGTCACGTGTGTAATACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
96506970 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
96507016 GCCTTGTCTA
Statistics
Matches: 122, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
49 39 0.32
50 44 0.36
51 39 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:96512386 original size:46 final size:44
Alignment explanation
Indices: 96512336--96512552 Score: 211
Period size: 46 Copynumber: 4.7 Consensus size: 44
96512326 CTTGTAGCTA
*
96512336 ATGCATGTCCGAGAGATGTCTTACACTAGCTTACATCTCGAGGCCG
1 ATGCATGTCC-AGACATGTCTTACACTAGCTT-CATCTCGAGGCCG
* *
96512382 ATGCATGTTCCAGACATGTCTTACACTAGCCCTCGTCTCGAGGCCG
1 ATGCATG-TCCAGACATGTCTTACACTAG-CTTCATCTCGAGGCCG
* * * * * *
96512428 ATGCATGTCTCAGACATGTTTTACACTAGCCCTCGTCTCAATGACG
1 ATGCATGTC-CAGACATGTCTTACACTAG-CTTCATCTCGAGGCCG
* * *
96512474 ATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATG-CATGTCC-AGACAT-GTCTTACACTAGCT-TCAT-CTCGAGGCCG
96512522 ATGCATGTCCCAGACATGTCTTACACTAGCT
1 ATGCATGT-CCAGACATGTCTTACACTAGCT
96512553 CACACACGAA
Statistics
Matches: 145, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.01
46 92 0.63
47 29 0.20
48 21 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (44 bp):
ATGCATGTCCAGACATGTCTTACACTAGCTTCATCTCGAGGCCG
Found at i:96512565 original size:94 final size:92
Alignment explanation
Indices: 96512287--96512566 Score: 246
Period size: 94 Copynumber: 3.0 Consensus size: 92
96512277 TATCTCAAGT
* * * * * ** * *
96512287 CGATGCCAT-TCCTAGACATGGTCTTACACAGACTATCATCTTGTAGCTAATGCATGTCCGAGAG
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCATGTCCCAGAC
* * *
96512351 ATGTCTTACACTAGCTTACATCTCG-AGGC
64 ATGTCTTACACTAGCTCACA-CTCGAATGA
* * * * * *
96512380 CGATGCATGTTCC-AGACAT-GTCTTACACTAGCCCTCGTCTCGAGGCCGATGCATGTCTCAGAC
1 CGATGCATG-TCCTAGACATGGTCTTACACTGGCTCTCATAT-GTGGCCGATGCATGTCCCAGAC
* * * *
96512443 ATGTTTTACACTAGCCCTCGTCTC-AATGA
64 ATGTCTTACACTAGCTCAC-ACTCGAATGA
96512472 CGATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCATGTCCCAGAC
*
96512537 ATGTCTTACACTAGCTCACACACGAATGA
64 ATGTCTTACACTAGCTCACACTCGAATGA
96512566 C
1 C
96512567 CCAAATGTCA
Statistics
Matches: 145, Mismatches: 32, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
91 1 0.01
92 59 0.41
93 23 0.16
94 61 0.42
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCTAGACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTCACACTCGAATGA
Found at i:96515920 original size:46 final size:44
Alignment explanation
Indices: 96515858--96515983 Score: 137
Period size: 46 Copynumber: 2.8 Consensus size: 44
96515848 ATTGAGACGA
* * *
96515858 GAGCTAGTGTAAGACATGTCTAAGACATGTATCGGCCT-CGAGAT
1 GAGCCAGTGTAAGACATGTCTAAGACATGCATC-GACTACGAGAT
**
96515902 GTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGAT
1 G--AGCCAGTGTAAGACATGTCTAAGACATGCATCGACTACGAGAT
**
96515948 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTAAGACAT-GCATCG
96515984 GTATCCTACC
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
44 14 0.19
45 17 0.24
46 41 0.57
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTAAGACATGCATCGACTACGAGAT
Found at i:96523593 original size:25 final size:25
Alignment explanation
Indices: 96523565--96523618 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
96523555 TGCCATAAGT
* * *
96523565 GCTTTCCAGATAATTCACCACAAAG
1 GCTTTACAGACAACTCACCACAAAG
* *
96523590 GCTTTATAGACAACTCGCCACAAAG
1 GCTTTACAGACAACTCACCACAAAG
96523615 GCTT
1 GCTT
96523619 CCCAAATGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (25 bp):
GCTTTACAGACAACTCACCACAAAG
Done.