Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 294 of 310
Found at i:96863831 original size:59 final size:57
Alignment explanation
Indices: 96863746--96863924 Score: 182
Period size: 59 Copynumber: 3.1 Consensus size: 57
96863736 ATCGACACCT
* * *
96863746 ATCGAATATGAAAGAGGATGGTTTCGACTATCGAA-TATGAAAAGGGATGGCTTCGACC
1 ATCGAATAAGAAAAAGGATGGTTTCGACCATC-AATTATGAAAAGGGATGG-TTCGACC
* * * *
96863804 ATCGATTAAAGAAAAAGGATGGTTTCGACCATCAATTGTGAAAAAGGATGGTGACGACC
1 ATCGAAT-AAGAAAAAGGATGGTTTCGACCATCAATTATGAAAAGGGATGGT-TCGACC
* * * * *
96863863 ATCGAATATG-AAAAGGATAGTTTTGACCATCAATTAAAGAAAAGGGATGGTTTCGACT
1 ATCGAATAAGAAAAAGGATGGTTTCGACCATCAATT-ATGAAAAGGGATGG-TTCGACC
96863921 ATCG
1 ATCG
96863925 TTTAGCACAC
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
57 23 0.23
58 30 0.30
59 47 0.47
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (57 bp):
ATCGAATAAGAAAAAGGATGGTTTCGACCATCAATTATGAAAAGGGATGGTTCGACC
Found at i:96875187 original size:235 final size:237
Alignment explanation
Indices: 96874753--96875224 Score: 860
Period size: 235 Copynumber: 2.0 Consensus size: 237
96874743 TATGGTCTAC
* *
96874753 AGTTTTATGGAATTGTTTTGTGAAAATTTAGTTCGAAAATTTTGACGTTTCGACACTCAATTTAG
1 AGTTTTATGGAATTATTTTGTGAAAATTTAGTTCGAAAATTTTGACATTTCGACACTCAATTTAG
96874818 TCAAAAGGACTAAATTGTAAAAAGTGCAAAACTTGAGTTCTATATGCTAGAGGTGTCCAATTGTT
66 TCAAAAGGACTAAATTGTAAAAAGTGCAAAACTTGAGTTCTATATGCTAGAGGTGTCCAATTGTT
96874883 ATGAAATTTTAAATTGGAAGTCCTTAAATGGTAATTAGACCACTGGTTAATTTTTTAGACAAAAA
131 ATGAAATTTTAAATTGGAAGTCCTTAAATGGTAATTAGACCACTGGTTAATTTTTTAGACAAAAA
96874948 TGGACATGAAATAGGTAAAATAGAATATTTTTAAGTTAGGAG
196 TGGACATGAAATAGGTAAAATAGAATATTTTTAAGTTAGGAG
* *
96874990 AGTTTTATGGAATTATTTTGTGAAAATTTCGTTCGAAAATTTTGACATTTGGACACTCAATTTAG
1 AGTTTTATGGAATTATTTTGTGAAAATTTAGTTCGAAAATTTTGACATTTCGACACTCAATTTAG
96875055 TCAAAAGGACTAAATTGT-AAAAGTGCAAAACTTGAGTTCTATATGCT-GAGGTGTCCAATTGTT
66 TCAAAAGGACTAAATTGTAAAAAGTGCAAAACTTGAGTTCTATATGCTAGAGGTGTCCAATTGTT
*
96875118 ATGAAATTTTAAATTGGAGGT-CTGTAAATGGTAATTAGACCACTGGTTAATTTTTTAGACAAAA
131 ATGAAATTTTAAATTGGAAGTCCT-TAAATGGTAATTAGACCACTGGTTAATTTTTTAGACAAAA
*
96875182 ATGGACATGAAATAGGTGAAATAGAATATTTTTAAGTTAGGAG
195 ATGGACATGAAATAGGTAAAATAGAATATTTTTAAGTTAGGAG
96875225 CATTTTGGTC
Statistics
Matches: 228, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
234 2 0.01
235 118 0.52
236 29 0.13
237 79 0.35
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (237 bp):
AGTTTTATGGAATTATTTTGTGAAAATTTAGTTCGAAAATTTTGACATTTCGACACTCAATTTAG
TCAAAAGGACTAAATTGTAAAAAGTGCAAAACTTGAGTTCTATATGCTAGAGGTGTCCAATTGTT
ATGAAATTTTAAATTGGAAGTCCTTAAATGGTAATTAGACCACTGGTTAATTTTTTAGACAAAAA
TGGACATGAAATAGGTAAAATAGAATATTTTTAAGTTAGGAG
Found at i:96877945 original size:49 final size:50
Alignment explanation
Indices: 96877761--96877952 Score: 226
Period size: 50 Copynumber: 3.8 Consensus size: 50
96877751 ATTTTATTAT
* * * * *
96877761 ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTC
* * *
96877812 ACGTGTGTAGTTA-TAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTC
1 ACATGTGTAG-TACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTC
* * *
96877862 ACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCGGATAATT-GGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTC
* * *
96877911 GCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATA
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
96877953 GTTTTGGCTA
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
49 42 0.35
50 43 0.36
51 34 0.28
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTC
Found at i:96877951 original size:99 final size:101
Alignment explanation
Indices: 96877764--96877955 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 101
96877754 TTATTATACA
* * *
96877764 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTTATAAG
1 TGTGTAGTACTAAGTGCAGGCCACTACGCGTACCCGATAACTTCGATCACATGTGTAGTTATAAG
*
96877829 TGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
66 TGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * *
96877865 TGTGTAGTACTAAGTGCAGGCCACTACGTGTACCGGATAA-TT-GGTCGCATGTGTAG-TACTAA
1 TGTGTAGTACTAAGTGCAGGCCACTACGCGTACCCGATAACTTCGATCACATGTGTAGTTA-TAA
* *
96877927 GTGTAGGCTACTATGTGTACCAGATAGTT
65 GTGCAGGCTACTACGTGTACCAGATAGTT
96877956 TTGGCTACAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
98 2 0.03
99 40 0.50
100 2 0.03
101 36 0.45
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCCACTACGCGTACCCGATAACTTCGATCACATGTGTAGTTATAAG
TGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
Found at i:96880339 original size:27 final size:27
Alignment explanation
Indices: 96880301--96880355 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
96880291 CGGGCGTGTG
96880301 ACCCCTATTTTGGCAAAAATTTTCTAA
1 ACCCCTATTTTGGCAAAAATTTTCTAA
*
96880328 ACCCCTATTTTGGTAAAAATTTTCTAA
1 ACCCCTATTTTGGCAAAAATTTTCTAA
96880355 A
1 A
96880356 TGTTGTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (27 bp):
ACCCCTATTTTGGCAAAAATTTTCTAA
Found at i:96880855 original size:23 final size:23
Alignment explanation
Indices: 96880819--96880869 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
96880809 GTTTCAACCT
* *
96880819 CACACGCCCGTGTGGAGGCAATG
1 CACACACCCATGTGGAGGCAATG
96880842 CACACACCCATGTGGAGGCAATG
1 CACACACCCATGTGGAGGCAATG
96880865 CACAC
1 CACAC
96880870 GCCCGTGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.12
Consensus pattern (23 bp):
CACACACCCATGTGGAGGCAATG
Found at i:96882422 original size:43 final size:43
Alignment explanation
Indices: 96882359--96882440 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
96882349 CATGAATCGC
* * *
96882359 ATCCATTATGAACTCAGACCTCTCAACGAGCTTGGATGCTTGT
1 ATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGCTTGT
* * *
96882402 ATCCATAATGAACTCGGACCTTTCTACAAGCTCGGATGC
1 ATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGC
96882441 CACATATCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (43 bp):
ATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGCTTGT
Found at i:96884300 original size:13 final size:13
Alignment explanation
Indices: 96884282--96884306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96884272 CCGAGCACAC
96884282 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
96884295 GCCCGTGTCCCT
1 GCCCGTGTCCCT
96884307 CAACGGCCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:96885730 original size:43 final size:42
Alignment explanation
Indices: 96885669--96885792 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
96885659 ACATGAATCG
* * * *
96885669 CATCCATTATGAACTCGGACCTCTCAATGAGCTCAGATGCTCT
1 CATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGC-CA
**
96885712 CATCCATAATGAACTCGGATATCTCAACGAGCTCGGATGCCA
1 CATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCCA
* * *
96885754 CATATC-TCATGAACTCGGACCACTCAACGAGCTCGGATG
1 CAT-CCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
96885793 TCTTAGTTCC
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 33 0.48
43 36 0.52
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (42 bp):
CATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCCA
Found at i:96887427 original size:25 final size:25
Alignment explanation
Indices: 96887399--96887460 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
96887389 ACGAGTTGTA
* *
96887399 AATGGTAAGCTCCTCCGAGCTGATT
1 AATGGTAAGCTCCTCCAAGCTGAAT
*
96887424 AATGGTAAGCACCTCCAAGCTGAAT
1 AATGGTAAGCTCCTCCAAGCTGAAT
*
96887449 AACGGTAAGCTC
1 AATGGTAAGCTC
96887461 ATACTAGCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (25 bp):
AATGGTAAGCTCCTCCAAGCTGAAT
Found at i:96892697 original size:2 final size:2
Alignment explanation
Indices: 96892690--96892727 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
96892680 AGTCAAATGA
*
96892690 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96892728 TATCCCCCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:96893064 original size:26 final size:26
Alignment explanation
Indices: 96893035--96893100 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
96893025 TGAATTTCTT
96893035 TATTATTTGATATGTTT-AGA-TTTTAC
1 TATTATTTGAT-T-TTTGAGACTTTTAC
* * *
96893061 TATTAATTGATTTTTGATACTTTTAT
1 TATTATTTGATTTTTGAGACTTTTAC
96893087 TATTATTTGATTTT
1 TATTATTTGATTTT
96893101 AATATACTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 3 0.09
25 3 0.09
26 28 0.82
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (26 bp):
TATTATTTGATTTTTGAGACTTTTAC
Found at i:96895283 original size:26 final size:25
Alignment explanation
Indices: 96895229--96895291 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
96895219 TGTAAGCTTA
*
96895229 ATATTTA-TTCTTTTTATTAACTAT
1 ATATTTAGTTTTTTTTATTAACTAT
96895253 ATATTTAGTTTTTTTTAATTCAACT-T
1 ATATTTAGTTTTTTTT-ATT-AACTAT
*
96895279 TTATTTAGTTTTT
1 ATATTTAGTTTTT
96895292 CACGTAATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 7 0.21
25 7 0.21
26 16 0.47
27 4 0.12
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.65
Consensus pattern (25 bp):
ATATTTAGTTTTTTTTATTAACTAT
Found at i:96896191 original size:15 final size:15
Alignment explanation
Indices: 96896171--96896201 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
96896161 TAATACAATA
96896171 AGGGTTTCAAAAAAT
1 AGGGTTTCAAAAAAT
96896186 AGGGTTTCAAAAAAT
1 AGGGTTTCAAAAAAT
96896201 A
1 A
96896202 CAAATCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.26
Consensus pattern (15 bp):
AGGGTTTCAAAAAAT
Found at i:96901453 original size:21 final size:21
Alignment explanation
Indices: 96901429--96901476 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
96901419 GTGTCTCCAC
* *
96901429 CACACGGCCATGTGCCTCTTT
1 CACACGGCCATGTCCCTCCTT
* *
96901450 CACACGGGCGTGTCCCTCCTT
1 CACACGGCCATGTCCCTCCTT
96901471 CACACG
1 CACACG
96901477 ACTTAGACTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.42, G:0.21, T:0.23
Consensus pattern (21 bp):
CACACGGCCATGTCCCTCCTT
Found at i:96903268 original size:46 final size:44
Alignment explanation
Indices: 96903194--96903306 Score: 129
Period size: 46 Copynumber: 2.5 Consensus size: 44
96903184 GGGTTATTTG
* * * * *
96903194 TGTGCTAGTGTAATACATGTTTGGGACATGCATCGGCCT-CAAGA
1 TGTGTTAGTGTAAGACATGTCTGAGACATGCATC-GACTACAAGA
96903238 TGTAAGTTAGTGTAAGACATGTCTGAGACATGCATCGACTACAAGA
1 TGT--GTTAGTGTAAGACATGTCTGAGACATGCATCGACTACAAGA
*
96903284 TGTGTCAGTGTAAGACCATGTCT
1 TGTGTTAGTGTAAGA-CATGTCT
96903307 AGGATATGGC
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
44 14 0.24
45 10 0.17
46 35 0.59
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
TGTGTTAGTGTAAGACATGTCTGAGACATGCATCGACTACAAGA
Found at i:96903326 original size:24 final size:24
Alignment explanation
Indices: 96903294--96903366 Score: 128
Period size: 24 Copynumber: 3.0 Consensus size: 24
96903284 TGTGTCAGTG
*
96903294 TAAGACCATGTCTAGGATATGGCA
1 TAAGACCATGTCTAGGACATGGCA
96903318 TAAGACCATGTCTAGGACATGGCA
1 TAAGACCATGTCTAGGACATGGCA
*
96903342 TAAGACCATGTCTGGGACATGGCA
1 TAAGACCATGTCTAGGACATGGCA
96903366 T
1 T
96903367 CGGCACGTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (24 bp):
TAAGACCATGTCTAGGACATGGCA
Found at i:96903394 original size:48 final size:50
Alignment explanation
Indices: 96903342--96903468 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
96903332 GGACATGGCA
* *
96903342 TAAGACCATGTCTGGGACATGGCATCGGCAC-G-TATA-GAG-GTGTCAGTC
1 TAAGACCATGTCTGGGACATGGCATCGGCACAGATATATGAGAG-CT-AATC
* * *
96903390 TAAGACCATGTCTAGGACATGGCATCGACACAGATATATGAGAGCTAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCACAGATATATGAGAGCTAATC
* *
96903440 AAAGACCATGTCTGCGACATGGCATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
96903469 CTTGATTTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
48 29 0.44
49 1 0.02
50 31 0.47
51 4 0.06
52 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACAGATATATGAGAGCTAATC
Found at i:96903508 original size:49 final size:48
Alignment explanation
Indices: 96903431--96903562 Score: 144
Period size: 47 Copynumber: 2.8 Consensus size: 48
96903421 AGATATATGA
* * * *
96903431 GAGCTAATGAAAGACCATGTCTGCGACATGGCATCGGCCTTGATTTCAAT
1 GAGCTAATGTAAGACCATGCCTGGGACATGGCATCGGACTTGA--TCAAT
* **
96903481 -AG-TCAATGTAAGACCATGCCTGGGACATGGCTTC-GACTTGATGGAT
1 GAGCT-AATGTAAGACCATGCCTGGGACATGGCATCGGACTTGATCAAT
*
96903527 GAGCTAGTGTAAGACCATGCCTGGGACATGGCATCG
1 GAGCTAATGTAAGACCATGCCTGGGACATGGCATCG
96903563 ACATTATACC
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
46 3 0.04
47 30 0.43
48 8 0.12
49 28 0.41
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (48 bp):
GAGCTAATGTAAGACCATGCCTGGGACATGGCATCGGACTTGATCAAT
Found at i:96911113 original size:47 final size:47
Alignment explanation
Indices: 96910999--96911125 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 47
96910989 TTATTTGTGT
* *
96910999 GCTAGTGTAAGA-TATGTCTGGGACAT-GCATCAGCCACATTATTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA--CACATTATGGAGA
* *
96911046 GCCAGTTTAAGACCATGTCTGGGACATGGCATCA-AC-TTGATGGATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCACACATT-ATGGA-GA
96911093 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
96911126 GGCATTATAC
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 2 0.03
46 6 0.09
47 43 0.61
48 13 0.19
49 6 0.09
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCACACATTATGGAGA
Found at i:96915452 original size:20 final size:21
Alignment explanation
Indices: 96915413--96915452 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96915403 GTCATAATGG
*
96915413 CCACATGGGCGTGTTGCCCTT
1 CCACATGGGCGTGATGCCCTT
96915434 CCACATGGGCGT-ATGCCCT
1 CCACATGGGCGTGATGCCCT
96915453 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (21 bp):
CCACATGGGCGTGATGCCCTT
Found at i:96932114 original size:19 final size:19
Alignment explanation
Indices: 96932087--96932124 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
96932077 TAAGGAGTGA
*
96932087 AAAGGGGAGTAAA-AAAAGG
1 AAAGAGGAG-AAAGAAAAGG
96932106 AAAGAGGAGAAAGAAAAGG
1 AAAGAGGAGAAAGAAAAGG
96932125 GAGGAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.03
Consensus pattern (19 bp):
AAAGAGGAGAAAGAAAAGG
Found at i:96935110 original size:40 final size:40
Alignment explanation
Indices: 96934918--96935110 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
96934908 TAATTATTGT
* * *
96934918 TTGAATGCACATACATGCCCCTGTTTGTACTTCGATACCC
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTTGATACCC
* **
96934958 TTGAATGCATATACGTGCCCCTTTTTGTACTTTGGCACCC
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTTGATACCC
* * *
96934998 CTAAATGCACATACGTGCCCCTTTTTGTACTTCGATACCC
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTTGATACCC
* * * * * *
96935038 CTAAATGGACATTCATG-CCCTTGATTGTACTTTGATACCC
1 TTGAATGCACATACGTGCCCCTT-TTTGTACTTTGATACCC
96935078 TTGAATGCACATACGTGCCCCTTTTTGTACTTT
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTT
96935111 AGTACCCCAG
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
39 5 0.04
40 118 0.92
41 5 0.04
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (40 bp):
TTGAATGCACATACGTGCCCCTTTTTGTACTTTGATACCC
Found at i:96935135 original size:80 final size:79
Alignment explanation
Indices: 96934918--96935135 Score: 251
Period size: 80 Copynumber: 2.7 Consensus size: 79
96934908 TAATTATTGT
* * ** * *
96934918 TTGAATGCACATACATGCCCCTGTTTGTACTTCGATACCCTTGAATGCATATACGTGCCCCTTTT
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTCGATACCCCAGAATGCATATACATG-CCCTTAT
*
96934983 TGTACTTTGGCACCC
65 TGTACTTTGACACCC
* * * * *
96934998 CTAAATGCACATACGTGCCCCTTTTTGTACTTCGATACCCCTA-AATGGACATTCATGCCCTTGA
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTCGATACCCC-AGAATGCATATACATGCCCTT-A
*
96935062 TTGTACTTTGATACCC
64 TTGTACTTTGACACCC
* *
96935078 TTGAATGCACATACGTGCCCCTTTTTGTACTT-TAGTACCCCAGAATGCATAAACATGC
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTCGA-TACCCCAGAATGCATATACATGC
96935136 TCCTAATCTT
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
79 7 0.06
80 107 0.94
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.33
Consensus pattern (79 bp):
TTGAATGCACATACGTGCCCCTTTTTGTACTTCGATACCCCAGAATGCATATACATGCCCTTATT
GTACTTTGACACCC
Found at i:96935162 original size:120 final size:120
Alignment explanation
Indices: 96934921--96935140 Score: 289
Period size: 120 Copynumber: 1.8 Consensus size: 120
96934911 TTATTGTTTG
* *
96934921 AATGCACATACATGCCCCTGTTTGTACTTCGATACCCTTGAATGCATATACGTGCCCCTTTTTGT
1 AATGCACATACATGCCCCTGATTGTACTTCGATACCCTTGAATGCACATACGTGCCCCTTTTTGT
* * * * * *
96934986 ACTTTGGCACCCCTAAATGCACATACGTGCCCCTTTTTGTACTTCGATACCCCTA
66 ACTTTAGCACCCCTAAATGCACAAACATGCCCCTATCTGTACTTCGATAACCCTA
* * * *
96935041 AATGGACATTCATGCCCTTGATTGTACTTTGATACCCTTGAATGCACATACGTGCCCCTTTTTGT
1 AATGCACATACATGCCCCTGATTGTACTTCGATACCCTTGAATGCACATACGTGCCCCTTTTTGT
* * *
96935106 ACTTTAGTACCCC-AGAATGCATAAACATGCTCCTA
66 ACTTTAGCACCCCTA-AATGCACAAACATGCCCCTA
96935141 ATCTTATTAT
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
119 1 0.01
120 85 0.99
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.33
Consensus pattern (120 bp):
AATGCACATACATGCCCCTGATTGTACTTCGATACCCTTGAATGCACATACGTGCCCCTTTTTGT
ACTTTAGCACCCCTAAATGCACAAACATGCCCCTATCTGTACTTCGATAACCCTA
Found at i:96936911 original size:15 final size:15
Alignment explanation
Indices: 96936891--96936919 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
96936881 AGGCTAAACC
96936891 TCAAGACTTATAACT
1 TCAAGACTTATAACT
96936906 TCAAGACTTATAAC
1 TCAAGACTTATAAC
96936920 CTAAGTCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (15 bp):
TCAAGACTTATAACT
Found at i:96937683 original size:19 final size:19
Alignment explanation
Indices: 96937659--96937700 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
96937649 TTGGATGAAG
96937659 AAAATAAATAA-TTAAATT
1 AAAATAAATAATTTAAATT
96937677 CAAAATAAATAATTTAAATT
1 -AAAATAAATAATTTAAATT
96937697 AAAA
1 AAAA
96937701 GATCATCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATAAATAATTTAAATT
Found at i:96939537 original size:14 final size:15
Alignment explanation
Indices: 96939510--96939540 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
96939500 ATAATCCGAC
96939510 TCATTCAGGGGGCTT
1 TCATTCAGGGGGCTT
96939525 TCATTCA-GGGGCTT
1 TCATTCAGGGGGCTT
96939539 TC
1 TC
96939541 GGAGTTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.13, C:0.23, G:0.29, T:0.35
Consensus pattern (15 bp):
TCATTCAGGGGGCTT
Found at i:96939989 original size:13 final size:13
Alignment explanation
Indices: 96939971--96939998 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
96939961 GAGAAAGGAT
96939971 CCAATCAGATAGA
1 CCAATCAGATAGA
96939984 CCAATCAGATAGA
1 CCAATCAGATAGA
96939997 CC
1 CC
96939999 TGCAAAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14
Consensus pattern (13 bp):
CCAATCAGATAGA
Found at i:96951294 original size:14 final size:14
Alignment explanation
Indices: 96951275--96951310 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
96951265 CTAGTAGTAG
96951275 TAGAAGGCTGATGT
1 TAGAAGGCTGATGT
96951289 TAGAAGGCTGATGT
1 TAGAAGGCTGATGT
96951303 TAGAAGGC
1 TAGAAGGC
96951311 CGAAAAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.36, T:0.25
Consensus pattern (14 bp):
TAGAAGGCTGATGT
Found at i:96963427 original size:55 final size:57
Alignment explanation
Indices: 96963324--96963505 Score: 177
Period size: 55 Copynumber: 3.4 Consensus size: 57
96963314 ATTTCTATGT
* * * * *
96963324 CTTGACATGGTCTTACGT-GG-TATCCTTGCCTCAT-GAAC-TCACCAATGCCATGC
1 CTTGGCATGGTCTTACATGGGACATCTTTGCCTTATAGAACTTCACCAATGCCATGC
*
96963377 CTTGGCATGGTCTTACATGGGACAT-TTT-CCTTATAGTAA-TTCACCAATGCCATGT
1 CTTGGCATGGTCTTACATGGGACATCTTTGCCTTATAG-AACTTCACCAATGCCATGC
* * ** *
96963432 CTTGACATGGTCTTACAT--TATTTCTTTGCCTTATAGAACTT-ATCAATGCCATGC
1 CTTGGCATGGTCTTACATGGGACATCTTTGCCTTATAGAACTTCACCAATGCCATGC
*
96963486 CTTGGCATGGTCTAACATGG
1 CTTGGCATGGTCTTACATGG
96963506 TATCCTTGTC
Statistics
Matches: 105, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
53 23 0.22
54 37 0.35
55 45 0.43
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (57 bp):
CTTGGCATGGTCTTACATGGGACATCTTTGCCTTATAGAACTTCACCAATGCCATGC
Found at i:96963787 original size:44 final size:44
Alignment explanation
Indices: 96963702--96963788 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
96963692 GTATCCTTAA
* *
96963702 CCGTCAATTCCTCCTTAAATGCCATGTTATGAACATAGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTT
* * *
96963746 CCGTCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAA-CATAGACTTT
96963789 GAGATATCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTT
Found at i:96983522 original size:47 final size:47
Alignment explanation
Indices: 96983468--96983661 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
96983458 TTAGGATTTT
** * *
96983468 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
96983515 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
96983562 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
96983609 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGACTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
96983656 ATGTGA
1 ATGTGA
96983662 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:96983568 original size:22 final size:22
Alignment explanation
Indices: 96983497--96983568 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
96983487 GTATATATGA
96983497 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
96983519 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
96983544 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
96983566 GAT
1 GAT
96983569 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:96983617 original size:25 final size:25
Alignment explanation
Indices: 96983542--96983617 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
96983532 ATGCATATAT
96983542 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
96983567 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
96983589 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
96983614 GTGA
1 GTGA
96983618 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:96984009 original size:37 final size:37
Alignment explanation
Indices: 96983864--96984008 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
96983854 GGAAATATAT
96983864 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96983901 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96983938 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
96983975 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
96984009 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96985516 original size:40 final size:40
Alignment explanation
Indices: 96985461--96985665 Score: 401
Period size: 40 Copynumber: 5.1 Consensus size: 40
96985451 GATGTTTATG
*
96985461 TGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
96985501 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
96985541 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
96985581 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
96985621 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
96985661 TGTAT
1 TGTAT
96985666 ATCATGCTGG
Statistics
Matches: 164, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
Found at i:96990893 original size:26 final size:27
Alignment explanation
Indices: 96990858--96990908 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
96990848 CCTAAGTATG
*
96990858 AAAATTACCATTATACCTCT-GGGTGC
1 AAAATGACCATTATACCTCTAGGGTGC
96990884 AAAATGACCATTATACCTCTAGGGT
1 AAAATGACCATTATACCTCTAGGGT
96990909 TAATTTTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAATGACCATTATACCTCTAGGGTGC
Found at i:96991079 original size:27 final size:26
Alignment explanation
Indices: 96991008--96991122 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
96990998 TGGAGGAAGC
96991008 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
96991035 GTTTCTGGTGGCTATGCCACGAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
96991063 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * * *
96991089 GTATCTAGTGACTCTGTCACAATATTT
1 GT-TCTGGTGGCTATGCCACAATATCT
96991116 GTTCTGG
1 GTTCTGG
96991123 CAGCGATGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.16
27 40 0.51
28 26 0.33
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:97004914 original size:46 final size:46
Alignment explanation
Indices: 97004864--97005030 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
97004854 AGCATCCGAG
*
97004864 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCTGAA
* * * * *
97004910 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCTGAA
* * * *
97004957 CTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCTGAA
* *
97005003 CTCATTGAGTTGAGTCTGAGTTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA
97005031 GGGGCGGGTT
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 52 0.54
47 28 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCTGAA
Found at i:97005014 original size:93 final size:93
Alignment explanation
Indices: 97004855--97005025 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
97004845 GGATGGTTGA
* * * *
97004855 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
97004920 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
97004948 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCTGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
*
97005013 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
97005026 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97006652 original size:566 final size:566
Alignment explanation
Indices: 97005577--97006694 Score: 2040
Period size: 566 Copynumber: 2.0 Consensus size: 566
97005567 TGAGAAAATG
* *
97005577 TTTGATATTTATAAGTCATGGTGATGGCTAATTTAGGTCATGTTTGATATCATGGAAGTTTAATA
1 TTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATCATGGAAGTTTAATA
*
97005642 GGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACAGAATATTGCTGCAG
66 AGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACAGAATATTGCTGCAG
97005707 CAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATGGAAATAAATGATGAGTAAGTTAT
131 CAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATGGAAATAAATGATGAGTAAGTTAT
*
97005772 GAAATTGAATCTTAATGAGTCTATTTTCATTTGGATTGAACAAAACAGGCATATAAATTATATTT
196 GAAATTGAATCTTAATGAGTCTATTTTCATGTGGATTGAACAAAACAGGCATATAAATTATATTT
*
97005837 TATGAGGTATTTAAACTTTTGTGAAACAGGGCCAGAGTGATTTCTGGATCCCCTGTTCTGACTTT
261 TATGAGATATTTAAACTTTTGTGAAACAGGGCCAGAGTGATTTCTGGATCCCCTGTTCTGACTTT
97005902 AAAAATTCATAATAAATTTTACAAAAGTAATTAGAAGTTTTTCTTTATATTTACAGATTCCTTAT
326 AAAAATTCATAATAAATTTTACAAAAGTAATTAGAAGTTTTTCTTTATATTTACAGATTCCTTAT
* *
97005967 TGAGTCTAGTTTTAAGAGAAACAAACTTCATAGTCATTTAAATTCTATATAGAGATATATCTAAT
391 TGAGTCTAGTTTTAAGAGAAACAAACTTCATAGTCATTGAAATTCTATATAGAGAGATATCTAAT
* *
97006032 TCGTAATACACAGAGGTCAGAGCAGTCGAACCCTGAAACAGGGGAGACTTTAATTAATAAAATGT
456 TCGTAATACACAGAGGTCAGAGCAGTCAAACCCTGAAACAGGGGAGAATTTAATTAATAAAATGT
97006097 ACTAATTGGCCCAACCAAAAATTCTAGAAAAATTTTATTAGATATA
521 ACTAATTGGCCCAACCAAAAATTCTAGAAAAATTTTATTAGATATA
97006143 TTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATCATGGAAGTTTAATA
1 TTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATCATGGAAGTTTAATA
*
97006208 AGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAATAGAATATTGCTGCAG
66 AGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACAGAATATTGCTGCAG
97006273 CAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATGGAAATAAATGATGAGTAAGTTAT
131 CAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATGGAAATAAATGATGAGTAAGTTAT
97006338 GAAATTGAATCTTAATGAGTCTATTTTCATGTGGATTGAACAAAACAGGCATATAAATTATATTT
196 GAAATTGAATCTTAATGAGTCTATTTTCATGTGGATTGAACAAAACAGGCATATAAATTATATTT
* *
97006403 TATGAGATATTTAAACTTTTGTGAAACAGGGCCTGAGTGATTTTTGGATCCCCTGTTCTGACTTT
261 TATGAGATATTTAAACTTTTGTGAAACAGGGCCAGAGTGATTTCTGGATCCCCTGTTCTGACTTT
97006468 AAAAATTCATAATAAATTTTACAAAAGTAATTAGAAGTTTTTCTTTATATTTACAGATTCCTTAT
326 AAAAATTCATAATAAATTTTACAAAAGTAATTAGAAGTTTTTCTTTATATTTACAGATTCCTTAT
* * * *
97006533 TGAGTCTAGTTTTAATAGAAACAAA-TCTCATTGTCATTGAAATTCTGTATAGAGAGATATCTGA
391 TGAGTCTAGTTTTAAGAGAAACAAACT-TCATAGTCATTGAAATTCTATATAGAGAGATATCTAA
* * * *
97006597 TTCTTTATACACAGAGGTCAGAGCAGTCAAACCCTGAAATAGGGGAGAATTTAATTAATAAACTG
455 TTCGTAATACACAGAGGTCAGAGCAGTCAAACCCTGAAACAGGGGAGAATTTAATTAATAAAATG
97006662 TACTAATTGGCCCAACCAAAAATTCTAGAAAAA
520 TACTAATTGGCCCAACCAAAAATTCTAGAAAAA
97006695 AATTAGTAAA
Statistics
Matches: 531, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
565 1 0.00
566 530 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (566 bp):
TTTGATATTGATAAGTCATGGTGATGGCTAATTTAGATCATGTTTGATATCATGGAAGTTTAATA
AGTTATCTAGTTCATAAAAATTCATGGAAAGATGAAACTTGCCTTAAAACAGAATATTGCTGCAG
CAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATGGAAATAAATGATGAGTAAGTTAT
GAAATTGAATCTTAATGAGTCTATTTTCATGTGGATTGAACAAAACAGGCATATAAATTATATTT
TATGAGATATTTAAACTTTTGTGAAACAGGGCCAGAGTGATTTCTGGATCCCCTGTTCTGACTTT
AAAAATTCATAATAAATTTTACAAAAGTAATTAGAAGTTTTTCTTTATATTTACAGATTCCTTAT
TGAGTCTAGTTTTAAGAGAAACAAACTTCATAGTCATTGAAATTCTATATAGAGAGATATCTAAT
TCGTAATACACAGAGGTCAGAGCAGTCAAACCCTGAAACAGGGGAGAATTTAATTAATAAAATGT
ACTAATTGGCCCAACCAAAAATTCTAGAAAAATTTTATTAGATATA
Found at i:97014639 original size:2 final size:2
Alignment explanation
Indices: 97014632--97014701 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
97014622 TTTAATTTAA
97014632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97014674 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97014702 GTTATCTATA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97015117 original size:8 final size:8
Alignment explanation
Indices: 97015104--97015129 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
97015094 AATAAATTTT
97015104 ATTTTAAA
1 ATTTTAAA
97015112 ATTTTAAA
1 ATTTTAAA
97015120 ATTTTAAA
1 ATTTTAAA
97015128 AT
1 AT
97015130 ATCATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATTTTAAA
Found at i:97025182 original size:29 final size:28
Alignment explanation
Indices: 97025146--97025223 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
97025136 TCATGAGATT
97025146 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
97025176 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
97025203 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
97025224 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:97025441 original size:174 final size:174
Alignment explanation
Indices: 97025176--97025503 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
97025166 AAATTGTACA
*
97025176 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
97025241 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
*
97025306 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTCTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
97025350 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
97025415 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
97025480 TTCTGGACAGCGGAAAAGGTAAGT
131 TTCTGGACAGCGGAAAAGGTAAGT
97025504 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTCTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:97033332 original size:29 final size:28
Alignment explanation
Indices: 97033296--97033373 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
97033286 TCATGAGATT
97033296 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
97033326 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
97033353 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
97033374 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:97033593 original size:145 final size:145
Alignment explanation
Indices: 97033351--97033624 Score: 503
Period size: 145 Copynumber: 1.9 Consensus size: 145
97033341 GTTTAAAGTA
*
97033351 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
97033416 ATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTAGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTAGACAGCGGAAAAGGTAAGTG
97033481 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
97033496 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
97033561 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTAGACAGCGGAAAAGGTAAGT
97033625 ACCTCGAGTT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 124 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTAGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:97049081 original size:93 final size:93
Alignment explanation
Indices: 97048974--97049144 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97048964 GCCCCTAAGT
* *
97048974 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97049039 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97049067 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97049132 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97049145 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97049141 original size:46 final size:46
Alignment explanation
Indices: 97048969--97049141 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
97048959 AACCCGCCCC
* * *
97048969 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
97049015 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
97049063 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
97049108 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97049142 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:97052083 original size:17 final size:17
Alignment explanation
Indices: 97052061--97052094 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97052051 AACTAACATT
*
97052061 AAAATGCAATGATAATA
1 AAAATGCAATGAAAATA
97052078 AAAATGCAATGAAAATA
1 AAAATGCAATGAAAATA
97052095 TGCACCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGAAAATA
Found at i:97061298 original size:20 final size:20
Alignment explanation
Indices: 97061275--97061314 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
97061265 TTTTACTTAG
97061275 ATATTAAGT-ATAAAATATAT
1 ATATT-AGTAATAAAATATAT
*
97061295 ATATTAGTAATAAATTATAT
1 ATATTAGTAATAAAATATAT
97061315 TAAATTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
ATATTAGTAATAAAATATAT
Found at i:97061323 original size:21 final size:20
Alignment explanation
Indices: 97061284--97061323 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
97061274 GATATTAAGT
*
97061284 ATAAAATATATATATTAGTA
1 ATAAAATATATAAATTAGTA
*
97061304 ATAAATTATATTAAATTAGT
1 ATAAAATATA-TAAATTAGT
97061324 TTAGAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
ATAAAATATATAAATTAGTA
Found at i:97061428 original size:15 final size:17
Alignment explanation
Indices: 97061408--97061439 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97061398 ATACAAATGT
97061408 AACAA-TGT-ATATATG
1 AACAATTGTAATATATG
97061423 AACAATTGTAATATATG
1 AACAATTGTAATATATG
97061440 CATTTGAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 3 0.20
17 7 0.47
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (17 bp):
AACAATTGTAATATATG
Found at i:97063119 original size:18 final size:18
Alignment explanation
Indices: 97063096--97063175 Score: 97
Period size: 18 Copynumber: 4.4 Consensus size: 18
97063086 TGAGTAAAGA
* *
97063096 TACTGAATGACTGACTGT
1 TACTGAATAACTGATTGT
* * *
97063114 TACTGAGTAATTGATTAT
1 TACTGAATAACTGATTGT
*
97063132 TACTGAATAACTGATTGC
1 TACTGAATAACTGATTGT
*
97063150 TACTGAATAATTGATTGT
1 TACTGAATAACTGATTGT
97063168 TACTGAAT
1 TACTGAAT
97063176 GATATTGGTA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:97063136 original size:36 final size:36
Alignment explanation
Indices: 97063096--97063177 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 36
97063086 TGAGTAAAGA
* *
97063096 TACTGAATGACTGACTGTTACTGAGTAATTGATTAT
1 TACTGAATGACTGACTGCTACTGAATAATTGATTAT
* * *
97063132 TACTGAATAACTGATTGCTACTGAATAATTGATTGT
1 TACTGAATGACTGACTGCTACTGAATAATTGATTAT
97063168 TACTGAATGA
1 TACTGAATGA
97063178 TATTGGTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (36 bp):
TACTGAATGACTGACTGCTACTGAATAATTGATTAT
Found at i:97064100 original size:21 final size:21
Alignment explanation
Indices: 97064061--97064115 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
97064051 CGGGCTCCCA
* *
97064061 ACACGGCCGTGTAACCTAGCG
1 ACACGGCCGTGTGATCTAGCG
* * *
97064082 ACATGGTCGTGTGATCTAGTG
1 ACACGGCCGTGTGATCTAGCG
97064103 ACACGGCCGTGTG
1 ACACGGCCGTGTG
97064116 TGTCACACGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.22
Consensus pattern (21 bp):
ACACGGCCGTGTGATCTAGCG
Found at i:97065948 original size:27 final size:27
Alignment explanation
Indices: 97065918--97066095 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97065908 ATATTGAGTC
* * * *
97065918 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97065945 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97065972 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97066000 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97066027 CGCACACTTAGTGC-ATCATATTCAATT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
97066054 CGCACACTTAGTGCAACATTGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97066081 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97066096 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97066057 original size:82 final size:81
Alignment explanation
Indices: 97065939--97066094 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97065929 TGCTATATAA
* *
97065939 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97066004 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * * *
97066021 TCAATTCGCACACTTAGTGC-ATCATATTCAATTCGCACACTTAGTGCAACATTGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97066085 CACTTAGTGC
65 CACTTAGTGC
97066095 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97066109 original size:82 final size:83
Alignment explanation
Indices: 97065918--97066109 Score: 216
Period size: 82 Copynumber: 2.3 Consensus size: 83
97065908 ATATTGAGTC
* * * * *
97065918 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
97065982 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * *
97066000 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCAATTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
*
97066061 TTAGTGCAACATTGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
*
97066081 CGCACACTTAGTGCTGTACAATTTAATTC
1 CGCACACTTAGTGCTGTACAATTCAATTC
97066110 CCGCGCACTT
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 70 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:97074013 original size:27 final size:27
Alignment explanation
Indices: 97073983--97074160 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97073973 ATATTGAGTC
* * * *
97073983 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97074010 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97074037 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97074065 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97074092 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97074119 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97074146 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97074161 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97074122 original size:82 final size:81
Alignment explanation
Indices: 97074004--97074159 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97073994 TGCTATATAA
* *
97074004 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97074069 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97074086 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97074150 CACTTAGTGC
65 CACTTAGTGC
97074160 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97086700 original size:30 final size:30
Alignment explanation
Indices: 97086640--97086700 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97086630 TCCTTAACTC
*
97086640 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
* * * *
97086670 AAACTTTTGCATATTTACACTTTTATCCCT
1 AAACTTTTGCAAAATTACAATTTTACCCCT
97086700 A
1 A
97086701 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTACCCCT
Found at i:97088279 original size:43 final size:43
Alignment explanation
Indices: 97088209--97088489 Score: 246
Period size: 43 Copynumber: 6.6 Consensus size: 43
97088199 ACAGGTTATG
* * ** *
97088209 CTTCGTTTTATCCAATGATGCACTGTGTGTGCTAGTATAGATA
1 CTTCGGTTTATCCAATGATGCACTGTATGTGCTAGTATATTTC
* * * * * ** *
97088252 TTTCGGTTTATCCAGTGATGCATTGTGTGTG-TCAGAATAGATG
1 CTTCGGTTTATCCAATGATGCACTGTATGTGCT-AGTATATTTC
** * * *
97088295 CTTCTATATATTCAATGATGCATTGTATGTGCTAGTATATTTC
1 CTTCGGTTTATCCAATGATGCACTGTATGTGCTAGTATATTTC
* * * * *
97088338 CTTCGATTTATCCGATGATGCACTATATGTCCCAGTATATTTC
1 CTTCGGTTTATCCAATGATGCACTGTATGTGCTAGTATATTTC
* *
97088381 CTTCAGTTTA-CTCGATGATGCACTGTATGTGCTAGTATATTTC
1 CTTCGGTTTATC-CAATGATGCACTGTATGTGCTAGTATATTTC
** * *
97088424 CTTTC-GTTTATCCGGTGATGCACTGTGTGTGCTAGTATA-TTG
1 C-TTCGGTTTATCCAATGATGCACTGTATGTGCTAGTATATTTC
97088466 CTTCGGTTTATCCAATGATGCACT
1 CTTCGGTTTATCCAATGATGCACT
97088490 TTGTCTATCA
Statistics
Matches: 197, Mismatches: 35, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
41 3 0.02
42 22 0.11
43 167 0.85
44 5 0.03
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (43 bp):
CTTCGGTTTATCCAATGATGCACTGTATGTGCTAGTATATTTC
Found at i:97089434 original size:11 final size:11
Alignment explanation
Indices: 97089418--97089448 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
97089408 CATAGAGTTC
97089418 TAAAATAAAAA
1 TAAAATAAAAA
97089429 TAAAATAAAAA
1 TAAAATAAAAA
*
97089440 CAAAATAAA
1 TAAAATAAA
97089449 TAAAAGATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:97098468 original size:25 final size:25
Alignment explanation
Indices: 97098440--97098534 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
97098430 CTCTTTTAAT
* *
97098440 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
97098465 AACTGGGCCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
97098490 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
97098515 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
97098535 AGCACTTCCA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:97098470 original size:50 final size:49
Alignment explanation
Indices: 97098415--97098535 Score: 138
Period size: 50 Copynumber: 2.4 Consensus size: 49
97098405 TTTATCATAT
*
97098415 AACTGGAGGCCTAGCCTCTTTTAAT-AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGG-GGCCTAGCC-CTTTTAATAAACTGGGGCAAAGCCCTTTTCGATA
* ** *
97098465 AACT-GGGCCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCC-TAGCCCTTTT-AATAAACTGGGGCAAAGCCCTTTTCGATA
*
97098515 AACTGGGGCATAGCCCTTTTA
1 AACTGGGGCCTAGCCCTTTTA
97098536 GCACTTCCAC
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
48 9 0.15
49 6 0.10
50 40 0.68
51 4 0.07
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (49 bp):
AACTGGGGCCTAGCCCTTTTAATAAACTGGGGCAAAGCCCTTTTCGATA
Found at i:97099359 original size:27 final size:27
Alignment explanation
Indices: 97099324--97099415 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
97099314 GGGCATATTC
* * *
97099324 ATCATTTTACCATACAGGGG-TATTACT
1 ATCACTTTACCCTACAGGGGCT-TTACG
97099351 ATCACTTTACCCTACAGGGGCTTTACG
1 ATCACTTTACCCTACAGGGGCTTTACG
* * *
97099378 GTCACTTTACCCTACAAGTGCTTTACG
1 ATCACTTTACCCTACAGGGGCTTTACG
* *
97099405 GTCGCTTTACC
1 ATCACTTTACC
97099416 TAATAGGGGT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (27 bp):
ATCACTTTACCCTACAGGGGCTTTACG
Found at i:97099499 original size:27 final size:27
Alignment explanation
Indices: 97099446--97099805 Score: 217
Period size: 27 Copynumber: 13.3 Consensus size: 27
97099436 TTTCATCTTA
* * * *
97099446 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
97099473 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
97099500 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
97099529 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * * *
97099556 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
97099583 TAAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
97099610 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
97099637 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
97099664 CAAGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
97099691 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
97099717 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** * *
97099744 CAAAGGTATTTTAATAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * * *
97099771 CGAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
97099798 CAAGGGTA
1 CAAGGGTA
97099806 AAACAGTAAT
Statistics
Matches: 266, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
26 25 0.09
27 212 0.80
28 14 0.05
29 15 0.06
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:97099618 original size:54 final size:53
Alignment explanation
Indices: 97099448--97099754 Score: 240
Period size: 54 Copynumber: 5.7 Consensus size: 53
97099438 TCATCTTACA
* * * * **
97099448 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACC
* * * * * * ** **
97099501 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATT
1 -AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTCGGTAATTTTACAAACC
** *
97099557 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACC
* * *
97099611 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACC
* * * * * * *
97099665 AAGGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTACTGATCG
1 -AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTAC-AAACC
** *
97099719 AGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
97099755 TAATAATTTT
Statistics
Matches: 204, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
53 42 0.21
54 109 0.53
55 19 0.09
56 34 0.17
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACC
Found at i:97099651 original size:81 final size:79
Alignment explanation
Indices: 97099531--97099754 Score: 254
Period size: 81 Copynumber: 2.8 Consensus size: 79
97099521 TAGAAAGTCA
* **
97099531 AGGGTATTTCT-GTAACTTTGTA-AATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTT
1 AGGGTATTT-TGGTAA-TTT-TACAAATAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* *
97099594 CGGTAATTTCACAAACC
63 CAGCAATTTCACAAACC
*
97099611 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 AG-GGTATTTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTC
* *
97099676 AGCAATTTTACAGACC
64 AGCAATTTCACAAACC
** * ** *
97099692 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTT
1 AGGGTATTTTGGTAATTTTACAAATAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
97099755 TAATAATTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
79 4 0.03
80 60 0.48
81 61 0.49
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (79 bp):
AGGGTATTTTGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAG
CAATTTCACAAACC
Found at i:97099763 original size:80 final size:81
Alignment explanation
Indices: 97099557--97099764 Score: 267
Period size: 80 Copynumber: 2.6 Consensus size: 81
97099547 TTTGTAAATT
** ** *
97099557 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
*
97099622 GGTAATTTTACAAACT
66 GGTAATTTTACAAACG
* *
97099638 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACCAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
* *
97099702 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAACG
** * *
97099719 A-GGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAATAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
97099765 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 59 0.53
81 52 0.47
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
GGTAATTTTACAAACG
Found at i:97099806 original size:27 final size:27
Alignment explanation
Indices: 97099766--97099913 Score: 179
Period size: 27 Copynumber: 5.5 Consensus size: 27
97099756 AATAATTTTG
**
97099766 TAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
97099793 TAAATCAAGGGTAAAACAGTAATTTTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* ** *
97099820 TAAATTGAGAATAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
97099847 TAAATCGAGGGTAAAACGGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
97099874 TAAGTCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
97099901 TAAATCGAGGGTA
1 TAAATCGAGGGTA
97099914 CTTTGGTAAT
Statistics
Matches: 102, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:97099924 original size:81 final size:81
Alignment explanation
Indices: 97099758--97099909 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
97099748 GGTATTTTAA
* * *
97099758 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTATAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAA
*
97099823 ATTGAGAATAAAACGG
66 ATCGAGAATAAAACGG
* * * * * **
97099839 TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAA
97099904 ATCGAG
66 ATCGAG
97099910 GGTACTTTGG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGAATAAAACGG
Found at i:97099926 original size:54 final size:54
Alignment explanation
Indices: 97099758--97099913 Score: 222
Period size: 54 Copynumber: 2.9 Consensus size: 54
97099748 GGTATTTTAA
* * *
97099758 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAG
1 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
* * ** * *
97099812 TAATTTTATAAATTGAGAATAAAACGGTAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
*
97099866 TAATTTTGTAAGTCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
97099914 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
Found at i:97102797 original size:19 final size:19
Alignment explanation
Indices: 97102760--97102798 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
97102750 AGGCCATGTG
* * *
97102760 ACCCATCCATACGGTCTCA
1 ACCCATCCACAAGGCCTCA
97102779 ACCCATCCACAAGGCCTCA
1 ACCCATCCACAAGGCCTCA
97102798 A
1 A
97102799 GACATAGCCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.10, T:0.15
Consensus pattern (19 bp):
ACCCATCCACAAGGCCTCA
Found at i:97104818 original size:39 final size:39
Alignment explanation
Indices: 97104768--97104906 Score: 197
Period size: 39 Copynumber: 3.5 Consensus size: 39
97104758 TGTAATTATA
*
97104768 CCTGAATGCACATACGTGCCCTTGTTGTACTTCGGTACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
**
97104807 TTTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* * *
97104846 CCTAAATGCACATACGTGCCCCTATTGTACTTTGGTACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* *
97104885 CCTGATTTGCACTTACGTGCCC
1 CCTGA-ATGCACATACGTGCCC
97104907 TTGATTATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 74 0.84
40 14 0.16
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.32
Consensus pattern (39 bp):
CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
Found at i:97110898 original size:18 final size:18
Alignment explanation
Indices: 97110871--97110918 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
97110861 TTCTGTTCAA
97110871 ACTATTACTGCACTAATT
1 ACTATTACTGCACTAATT
* * * *
97110889 ATTGTTACTGCTCTATTT
1 ACTATTACTGCACTAATT
97110907 ACTATTACTGCA
1 ACTATTACTGCA
97110919 ATGGACCAAG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (18 bp):
ACTATTACTGCACTAATT
Found at i:97113343 original size:55 final size:54
Alignment explanation
Indices: 97113264--97113503 Score: 226
Period size: 55 Copynumber: 4.5 Consensus size: 54
97113254 CATTAGGGTT
*
97113264 TAAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGATAAGGTTTC-TAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGAC-ATTGATAA-GTTTCATAAGG
* *
97113319 TAAGGATATCATGTAAGACCATGCCAAGATATGACATTGATAAGTTTCTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTTC-ATAAGG
* * * * * * *
97113374 CAAAGG-TCCCATGTAAAACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 -TAAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTTCATAAGG
* * * * * *
97113427 CAAGAATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC--AA--
1 TAAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTTCATAAGG
* *
97113477 -AAGGATACCACGTAAGACCATGACAAG
1 TAAGGATACCATGTAAGACCATGCCAAG
97113504 TCATCGCAAT
Statistics
Matches: 157, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 24 0.15
52 5 0.03
53 43 0.27
54 14 0.09
55 67 0.43
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (54 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTTCATAAGG
Found at i:97113471 original size:108 final size:110
Alignment explanation
Indices: 97113272--97113474 Score: 268
Period size: 108 Copynumber: 1.9 Consensus size: 110
97113262 TTTAAGGATA
* * * *
97113272 CCATGTAAGACCATGCCAAGGCATGACAATTGATAAGGTTTCTAAGGTAAGGATATCATGTAAGA
1 CCATGTAAAACCATGCCAAGGCATGACAATTGATAAGGTTTCTAAGGCAAGAATACCATGTAAGA
* *
97113337 CCATGCCAAGATATGACATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGCCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
97113382 CCATGTAAAACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGAATACCATGTAAG
1 CCATGTAAAACCATGCCAAGGCATGACAATTGATAAGGTTTC-TAAGGCAAGAATACCATGTAAG
* * *
97113444 ACCATGTCAAGACATGGCAATGGTAAGTTTC
65 ACCATGCCAAGACATGACAATGATAAGTTTC
97113475 AAAAGGATAC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 6 0.08
110 25 0.31
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (110 bp):
CCATGTAAAACCATGCCAAGGCATGACAATTGATAAGGTTTCTAAGGCAAGAATACCATGTAAGA
CCATGCCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:97113661 original size:42 final size:37
Alignment explanation
Indices: 97113562--97113672 Score: 213
Period size: 37 Copynumber: 3.0 Consensus size: 37
97113552 CAATGGGAAG
*
97113562 GTTTAAAGAGAATATCAAGGTAAGGTAAGGCAAGACA
1 GTTTAAAGAGAATAGCAAGGTAAGGTAAGGCAAGACA
97113599 GTTTAAAGAGAATAGCAAGGTAAGGTAAGGCAAGACA
1 GTTTAAAGAGAATAGCAAGGTAAGGTAAGGCAAGACA
97113636 GTTTAAAGAGAATAGCAAGGTAAGGTAAGGCAAGACA
1 GTTTAAAGAGAATAGCAAGGTAAGGTAAGGCAAGACA
97113673 AGTTATACTA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.46, C:0.08, G:0.29, T:0.17
Consensus pattern (37 bp):
GTTTAAAGAGAATAGCAAGGTAAGGTAAGGCAAGACA
Found at i:97117357 original size:27 final size:27
Alignment explanation
Indices: 97117326--97117503 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97117316 TAAATTGTAC
97117326 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97117353 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97117379 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97117407 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97117435 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97117462 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97117489 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97117504 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97117440 original size:82 final size:81
Alignment explanation
Indices: 97117327--97117482 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97117317 AAATTGTACA
* *
97117327 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97117391 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97117408 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97117473 TGCGAGTTGA
65 TGCGAATTGA
97117483 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97117494 original size:82 final size:81
Alignment explanation
Indices: 97117323--97117503 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
97117313 GATTAAATTG
* *
97117323 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97117388 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97117404 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97117468 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97117486 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97117504 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97123053 original size:27 final size:27
Alignment explanation
Indices: 97123014--97123218 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
97123004 ATTTTTAGTC
* * *
97123014 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
97123041 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
97123068 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
97123095 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
97123123 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
97123150 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
97123177 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
97123204 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97123219 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:97128666 original size:27 final size:27
Alignment explanation
Indices: 97128635--97128812 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97128625 TAAATTGTAC
97128635 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97128662 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97128688 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97128716 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97128744 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97128771 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97128798 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97128813 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97128749 original size:82 final size:81
Alignment explanation
Indices: 97128636--97128791 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97128626 AAATTGTACA
* *
97128636 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97128700 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97128717 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97128782 TGCGAGTTGA
65 TGCGAATTGA
97128792 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97128803 original size:82 final size:81
Alignment explanation
Indices: 97128632--97128812 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
97128622 GATTAAATTG
* *
97128632 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97128697 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97128713 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97128777 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97128795 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97128813 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97131446 original size:185 final size:184
Alignment explanation
Indices: 97131117--97131484 Score: 702
Period size: 185 Copynumber: 2.0 Consensus size: 184
97131107 GATTTAGCCG
*
97131117 GATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATCATCCGAATAATCATGCACA
1 GATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCATCCGAATAATCATGCACA
97131182 TATATCAATAAATCATAACACATCTATTTTTCATTTTCGTTACTAGAACTCAAGCACAAGACACT
66 TATATCAATAAATCATAACACATCTATTTTTCATTTTCGTTACTAGAACTCAAGCACAAGACACT
97131247 TATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAGAGCATGATTTTA
131 TATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAGAGCATGATTTTA
97131301 GATATAGTC-ACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATCATCCGAATAATCATGCA
1 GATATAG-CAACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATATCATCCGAATAATCATGCA
97131365 CATATATCAATAAATCATAACACATCTATTTTTCATTTTCGTTACTAGAACTCAAGCACAAGACA
64 CATATATCAATAAATCATAACACATCTATTTTTCATTTTCGTTACTAGAACTCAAGCACAAGACA
97131430 CTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAGAGCATGATTTT
129 CTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAGAGCATGATTTT
97131485 GATTTGCTTC
Statistics
Matches: 181, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
184 14 0.08
185 167 0.92
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (184 bp):
GATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCATCCGAATAATCATGCACA
TATATCAATAAATCATAACACATCTATTTTTCATTTTCGTTACTAGAACTCAAGCACAAGACACT
TATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAGAGCATGATTTTA
Found at i:97134619 original size:43 final size:43
Alignment explanation
Indices: 97134472--97134601 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
97134462 CTATCGTACA
* * * * **
97134472 ATGCCAACGTCCCAAACGTGGTCTTACATGTA-ATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AGAAAACATATCG
* * * *
97134515 ATGCCACTATCCCGGACAGGGTCTTACACGAGAAAACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAGAAAACATATCG
*
97134558 ATGCCAATGTCCCAGACATGGTCTTACACGAGAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAGAAAACATATCG
97134601 A
1 A
97134602 AATCCTATTT
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 70 0.99
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAGAAAACATATCG
Found at i:97143157 original size:40 final size:40
Alignment explanation
Indices: 97143102--97143321 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
97143092 TATTCGGATG
*
97143102 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
97143142 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
97143182 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* ** * *
97143222 ATATCC-GGCTAAATCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
97143261 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97143301 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
97143322 ATACTTGGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 43 0.28
40 110 0.72
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:97143268 original size:79 final size:79
Alignment explanation
Indices: 97143102--97143321 Score: 368
Period size: 79 Copynumber: 2.8 Consensus size: 79
97143092 TATTCGGATG
* * * * *
97143102 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGGCA
**
97143167 TTTGTGCTAGTGACT
65 TTCATGCTAGTGACT
97143182 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGCAT
1 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGCAT
97143247 TCATGCTAGTGACT
66 TCATGCTAGTGACT
97143261 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAG
97143322 ATACTTGGGT
Statistics
Matches: 133, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 91 0.68
80 42 0.32
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGCAT
TCATGCTAGTGACT
Found at i:97148437 original size:40 final size:40
Alignment explanation
Indices: 97148363--97148525 Score: 222
Period size: 40 Copynumber: 4.1 Consensus size: 40
97148353 GATAATCAGA
* * * *
97148363 CTAAGATCCGAAGGCATTCGTGCGGGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* * * *
97148403 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
*
97148443 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97148483 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97148522 CTAA
1 CTAA
97148526 ATCCTAAAGA
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 8 0.07
40 97 0.91
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:97150454 original size:18 final size:18
Alignment explanation
Indices: 97150431--97150466 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
97150421 CACCCGATGA
97150431 ATGCCTAAAGTGTACTAT
1 ATGCCTAAAGTGTACTAT
97150449 ATGCCTAAAGTGTACTAT
1 ATGCCTAAAGTGTACTAT
97150467 CTCCTTGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
ATGCCTAAAGTGTACTAT
Found at i:97156460 original size:40 final size:40
Alignment explanation
Indices: 97156386--97156748 Score: 538
Period size: 40 Copynumber: 9.1 Consensus size: 40
97156376 GATAACCGAA
* * **
97156386 CTAAGATCC-GAAGGCATTCGTGCGGGTTACTATATCCGGG
1 CTAAGA-CCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* * * * **
97156426 CTATGTCCCGAAGGCATTTATGCTTG-TGATTATATCCGGG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
*
97156466 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97156506 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* *
97156545 CTAA-ATCCCGAAGATCATTTGTGCGAGTTGTTATATCCGGG
1 CTAAGA-CCTGAAG-GCATTTGTGCGAGTTGTTATATCCGGG
97156586 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97156626 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97156666 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97156706 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
97156745 CTAA
1 CTAA
97156749 ATCCCGAAGA
Statistics
Matches: 298, Mismatches: 18, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.00
39 21 0.07
40 261 0.88
41 14 0.05
42 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
CTAAGACCTGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:97159923 original size:12 final size:12
Alignment explanation
Indices: 97159906--97159937 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
97159896 AAATAGGCTA
97159906 AATAGGCTTTGG
1 AATAGGCTTTGG
97159918 AATAGGCTTTGG
1 AATAGGCTTTGG
97159930 AATAGGCT
1 AATAGGCT
97159938 AAATAGGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.31
Consensus pattern (12 bp):
AATAGGCTTTGG
Found at i:97161785 original size:43 final size:42
Alignment explanation
Indices: 97161693--97161834 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 42
97161683 GATGTGAATA
* *
97161693 CATGTAAGACCATGTCTGGGACATTGGCATTGTGTTGA-GATTAT
1 CATGTAAGACCATGTCTGGGACATTGGCA-T-CGTTAATGATT-T
* *
97161737 -GTGTAAGACCATGTCTGGAACATTGGCATCGTTAATCGATTT
1 CATGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-GATTT
* * * * **
97161779 CATGTAAGACCCTATTTGGGACATTGGCATCGATATATGATAA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGTTA-ATGATTT
97161822 CATGTAAGACCAT
1 CATGTAAGACCAT
97161835 ATATAGGATA
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
41 4 0.05
42 2 0.02
43 73 0.90
44 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACATTGGCATCGTTAATGATTT
Found at i:97167132 original size:47 final size:47
Alignment explanation
Indices: 97166939--97167156 Score: 200
Period size: 47 Copynumber: 4.7 Consensus size: 47
97166929 TATACGTGCT
* **
97166939 GATGCATGTCCCAGACATGTCTTACACTAGCA--CA-ACTCTCAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATACTCTTGGCC
* * * **
97166983 GATGGATGTCCTAGACACGTCTTACACTGGCTA-TCAT-CGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATAC-TCTTGGCC
* * * * *
97167030 AATGCATGTCTCGGACATGTCTTACACTGGCACTTAT-CTCTAT-GCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATACTCT-TGGCC
*
97167076 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-TTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATACTCTTGGCC
*
97167124 GATGCATGTCCCAAACATGTCTTACACTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
97167157 ATAAGTAATT
Statistics
Matches: 140, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 27 0.19
45 1 0.01
46 26 0.19
47 60 0.43
48 25 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATACTCTTGGCC
Found at i:97167886 original size:12 final size:12
Alignment explanation
Indices: 97167869--97167893 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97167859 CAAAAATGTA
97167869 AAAATCATCAAG
1 AAAATCATCAAG
97167881 AAAATCATCAAG
1 AAAATCATCAAG
97167893 A
1 A
97167894 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:97171619 original size:13 final size:13
Alignment explanation
Indices: 97171603--97171628 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97171593 TGGACACACA
97171603 CCCGTGTCCTTTC
1 CCCGTGTCCTTTC
97171616 CCCGTGTCCTTTC
1 CCCGTGTCCTTTC
97171629 ACACGGGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38
Consensus pattern (13 bp):
CCCGTGTCCTTTC
Found at i:97172758 original size:94 final size:94
Alignment explanation
Indices: 97172542--97173425 Score: 1585
Period size: 94 Copynumber: 9.4 Consensus size: 94
97172532 ATAAGTTGTT
****
97172542 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATC-GGGGTCGATGCCATGTCCCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCTACACT-GATGCCATGTCCCA
* * * * *
97172605 CACATGGTCTTACACTAGCTCTCGTATATACGTG-CT
61 AACATGGTCTTACACTGGCACTC--ATA-ATGTGACC
97172641 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97172706 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97172735 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97172800 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97172829 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97172894 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97172923 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97172988 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97173017 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97173082 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97173111 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97173176 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97173205 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97173270 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
97173299 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
97173364 GGTCTTACACTGGCACTCATAATGTGACC
66 GGTCTTACACTGGCACTCATAATGTGACC
*
97173393 GATGCATGTCCCAGACATGTCTTACACGGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
97173426 ATAAGTAATG
Statistics
Matches: 772, Mismatches: 10, Indels: 11
0.97 0.01 0.01
Matches are distributed among these distances:
93 4 0.01
94 694 0.90
96 37 0.05
97 19 0.02
98 14 0.02
99 4 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACTGATGCCATGTCCCAAACAT
GGTCTTACACTGGCACTCATAATGTGACC
Found at i:97178270 original size:39 final size:39
Alignment explanation
Indices: 97178206--97178363 Score: 217
Period size: 39 Copynumber: 4.1 Consensus size: 39
97178196 TGTGAATATT
* **
97178206 TATACGCGAGAATTATATCCAGACTTCAGGTCCATAGGC
1 TATATGCGAGAATTATATCCAGACTTCAGGTCCGCAGGC
* *
97178245 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCAGACTTCAGGTCCGCAGGC
* ** *
97178284 TATATGCGAGAATTCTATCTGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCAGACTTCAGGTCCGCAGGC
* *
97178323 TATATGCGAGAATTATATCCAGACTTTAGGTCTGCAGGC
1 TATATGCGAGAATTATATCCAGACTTCAGGTCCGCAGGC
97178362 TA
1 TA
97178364 CGTGCTGGAC
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCAGACTTCAGGTCCGCAGGC
Found at i:97190192 original size:51 final size:50
Alignment explanation
Indices: 97190066--97190202 Score: 170
Period size: 49 Copynumber: 2.7 Consensus size: 50
97190056 TATTGTGAGG
* * * ** *
97190066 TCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGGA
* *
97190116 TGCA--TGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCAATAACTTTGA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAA-TTGGA
97190166 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA
97190203 GTAGATAACC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
49 36 0.49
50 5 0.07
51 33 0.45
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGGA
Found at i:97190211 original size:51 final size:51
Alignment explanation
Indices: 97190066--97190211 Score: 165
Period size: 51 Copynumber: 2.9 Consensus size: 51
97190056 TATTGTGAGG
* * * * *
97190066 TCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTGGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTGGA
* *
97190116 TGCA--TGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCA-ATAACTTTGA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGATAACTTGGA
**
97190166 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAGTAGATAAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAAC
97190212 CTTGTCTACA
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
49 34 0.43
50 8 0.10
51 38 0.47
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTGGA
Found at i:97192605 original size:43 final size:43
Alignment explanation
Indices: 97192541--97192628 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
97192531 GAAAAGTGTA
*
97192541 AATCAAAATTTATTCAAAACTGTTCTTCTTTAGTGAAAGGTCT
1 AATCAAAATTTATTCAAAACTGTTCTTATTTAGTGAAAGGTCT
*
97192584 AATCAAAATTTATTCAGAACTGTTCTTATTTAGTGAAAGGTCT
1 AATCAAAATTTATTCAAAACTGTTCTTATTTAGTGAAAGGTCT
97192627 AA
1 AA
97192629 CATTAAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (43 bp):
AATCAAAATTTATTCAAAACTGTTCTTATTTAGTGAAAGGTCT
Found at i:97197865 original size:27 final size:27
Alignment explanation
Indices: 97197824--97197877 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
97197814 GTCATGTGAA
*
97197824 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTGTTACATG
**
97197851 AATTGAATGTTAAATTACTGTTACATG
1 AATTGAATGGCAAATTACTGTTACATG
97197878 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTGTTACATG
Found at i:97198242 original size:51 final size:49
Alignment explanation
Indices: 97198129--97198361 Score: 259
Period size: 49 Copynumber: 4.7 Consensus size: 49
97198119 GTGAGGTCAC
* *
97198129 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTGTGTA
* * * * *
97198178 GTACTAAGTGCAGGCTGCTATGCGTACCCGATAACTTCGATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACGTGTGTA
* * **
97198229 GTACCAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACGTGTGTA
* * ** *
97198279 GTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTTGCATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTGTGTA
* * * *
97198328 GTACTAAGTGCAGGATACTATGCGTAGCAGATAA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA
97198362 CCTTGTCTAC
Statistics
Matches: 150, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 68 0.45
50 46 0.31
51 36 0.24
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACGTGTGTA
Found at i:97198312 original size:101 final size:98
Alignment explanation
Indices: 97198129--97198361 Score: 270
Period size: 101 Copynumber: 2.3 Consensus size: 98
97198119 GTGAGGTCAC
*
97198129 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCT
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCT
* **
97198194 GCTATGCGTACCCGATAACTTCGAT-CACGTGTGTA
66 ACTACACGTACCCGATAA-TTCGATGCA--TGTGTA
* * ** *
97198229 GTACCAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGC
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGTGCAGGC
* * * *
97198294 TACTACATGTACCGGATAATTGGTTGCATGTGTA
65 TACTACACGTACCCGATAATTCGATGCATGTGTA
* * * *
97198328 GTACTAAGTGCAGGATACTATGCGTAGCAGATAA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA
97198362 CCTTGTCTAC
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
99 33 0.30
100 36 0.32
101 42 0.38
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (98 bp):
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCT
ACTACACGTACCCGATAATTCGATGCATGTGTA
Found at i:97199689 original size:17 final size:17
Alignment explanation
Indices: 97199669--97199701 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97199659 AATTGGTAAC
*
97199669 TACATTATGATGGTATG
1 TACATTATGAGGGTATG
97199686 TACATTATGAGGGTAT
1 TACATTATGAGGGTAT
97199702 AAAATGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39
Consensus pattern (17 bp):
TACATTATGAGGGTATG
Found at i:97201022 original size:43 final size:43
Alignment explanation
Indices: 97200961--97201048 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
97200951 AAAATCATAA
97200961 AGATCACTTACATTATGAGAGGAATAAGTAGCTACAAATTTTC
1 AGATCACTTACATTATGAGAGGAATAAGTAGCTACAAATTTTC
*
97201004 AGATCACTTACATTATGAGAGGAATAAGTAGCTGCAAATTTTC
1 AGATCACTTACATTATGAGAGGAATAAGTAGCTACAAATTTTC
97201047 AG
1 AG
97201049 CTTTCAAACC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (43 bp):
AGATCACTTACATTATGAGAGGAATAAGTAGCTACAAATTTTC
Found at i:97207829 original size:47 final size:46
Alignment explanation
Indices: 97207583--97207846 Score: 173
Period size: 47 Copynumber: 5.6 Consensus size: 46
97207573 AGTAAGTTGT
* *
97207583 CGATGCCATGTCCCATACATGGTCTTACACTGGCTATCATC-ATTGGGGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGC-ATCATCTA-T-AGGC
* * * *
97207632 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATACGTGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGC-ATCATCTATA-G-GC
* * * * * *
97207682 TGACGAATGTCCCGGACAT-GTCTTACACTAGCA-CAACTATCA-GC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCATCATCTAT-AGGC
* * * * *
97207726 AGATGCATGTCTCAAACA-CGTCTTACACTGGCTATCGTCGTCA-AGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGC-ATCATC-T-ATAGGC
* *
97207773 CGATGCATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCA-TCATCTATAGGC
*
97207819 CAATGCCATGTCCCAGACATGGTCTTAC
1 CGATG-CATGTCCCAGACATGGTCTTAC
97207847 TCTGACACAT
Statistics
Matches: 171, Mismatches: 29, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
44 26 0.15
45 1 0.01
46 17 0.10
47 50 0.29
48 21 0.12
49 50 0.29
50 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCATCATCTATAGGC
Found at i:97209383 original size:24 final size:24
Alignment explanation
Indices: 97209350--97209396 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
97209340 GGCAATGTGA
97209350 TAAGTGAAATAAGTCCATGGCATC
1 TAAGTGAAATAAGTCCATGGCATC
*
97209374 TAAGTTAAATAAGTCCATGGCAT
1 TAAGTGAAATAAGTCCATGGCAT
97209397 TTTACTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAGTGAAATAAGTCCATGGCATC
Found at i:97209488 original size:51 final size:51
Alignment explanation
Indices: 97209432--97209578 Score: 242
Period size: 51 Copynumber: 2.9 Consensus size: 51
97209422 TGAACCTTAG
*
97209432 GAATAAAATAGCTTTGGACATAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
97209483 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTCAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
97209534 AAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCA
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCA
97209579 TCATGTATCC
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 1 0.01
51 89 0.99
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:97213998 original size:42 final size:41
Alignment explanation
Indices: 97213896--97214015 Score: 125
Period size: 43 Copynumber: 2.9 Consensus size: 41
97213886 GTTTGAGACA
* *
97213896 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGATT-AGATT
* * *
97213938 TACGTATAAGACCATGTCTGGGACATTGGCATCGTATCT-TATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCG-AT-TAGATT
* * *
97213981 TCGTGTAAGACCCTGTCTGGGACAAAGACATCGAT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGAT
97214016 ATTGAGTTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.43
43 32 0.49
44 2 0.03
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCATCGATTAGATT
Found at i:97214054 original size:85 final size:84
Alignment explanation
Indices: 97213896--97214054 Score: 185
Period size: 85 Copynumber: 1.9 Consensus size: 84
97213886 GTTTGAGACA
* * * * * * *
97213896 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACAAAGACATCGATTGAGA-TTACATATAAGACCACGTCCGGGA
*
97213961 CATTGGCATCGTATCTTATT
65 CATCGGCATCGTATCTTATT
*
97213981 TCGTGTAAGACCCTGTCTGGGACAAAGACATCGATATTGAG-TTACATGTAAGACCACGTCCGGG
1 TCGTGTAAGACCCTGTCTGGGACAAAGACATCG--ATTGAGATTACATATAAGACCACGTCCGGG
**
97214045 ATGTCGGCAT
64 ACATCGGCAT
97214055 TGTACTTGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
85 55 0.90
87 6 0.10
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGGACAAAGACATCGATTGAGATTACATATAAGACCACGTCCGGGAC
ATCGGCATCGTATCTTATT
Found at i:97220912 original size:39 final size:41
Alignment explanation
Indices: 97220825--97220912 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 41
97220815 NNNNNNNNNN
*
97220825 CCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGA
1 CCCGAAGGCATTTTGTGCGAGTGACTATATCCGGGCTAAGA
97220866 CCCGAAGGCA-TTTGTGCGAGTTG-CTATATCC-GGCTAA-A
1 CCCGAAGGCATTTTGTGCGAG-TGACTATATCCGGGCTAAGA
97220904 TCCCGAAGG
1 -CCCGAAGG
97220913 TACTTGGGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
38 1 0.02
39 14 0.32
40 17 0.39
41 12 0.27
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
CCCGAAGGCATTTTGTGCGAGTGACTATATCCGGGCTAAGA
Found at i:97223507 original size:47 final size:47
Alignment explanation
Indices: 97223445--97223613 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 47
97223435 AAGCTTAGCC
* * *
97223445 GATGTATGTCTCAGACACGCCTTACACTGGCTACCATAATTGAGGCT
1 GATGCATGTCCCAGACACGTCTTACACTGGCTACCATAATTGAGGCT
* *
97223492 GATGCATGTCCCAGACACGTCTTACACTGGC-ACTCAT-ATCT-ACGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTAC-CATAAT-TGAGGCT
* * * * *
97223538 AATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAA-TGTGGCT
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTACCATAATTGAGGCT
* *
97223586 GATGCATGTCCCAGACATGTCATACACT
1 GATGCATGTCCCAGACACGTCTTACACT
97223614 AGCCCTCATC
Statistics
Matches: 100, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
46 19 0.19
47 59 0.59
48 20 0.20
49 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTACCATAATTGAGGCT
Found at i:97223570 original size:48 final size:48
Alignment explanation
Indices: 97223496--97223661 Score: 171
Period size: 47 Copynumber: 3.5 Consensus size: 48
97223486 GAGGCTGATG
* *
97223496 CATGTCCCAGACA-CGTCTTACACTGGCACTCATATCTACGCCAATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACTCATATCTACGCTAATGC
* * * *
97223543 CATGTCCCAGACATGGTCTTACACTGGCTA-TCGTAATGT-GGCTGATG-
1 CATGTCCCAGACATGGTCTTACACTGGC-ACTCAT-ATCTACGCTAATGC
* * * * * *
97223590 CATGTCCCAGACAT-GTCATACACTAGCCCTCATCTCAATGCTAATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACTCATATCTACGCTAATGC
97223637 CATGTCCCAGACATGGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
97223662 CGCTCTCACA
Statistics
Matches: 96, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 20 0.21
47 41 0.43
48 30 0.31
49 4 0.04
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCACTCATATCTACGCTAATGC
Found at i:97223588 original size:94 final size:93
Alignment explanation
Indices: 97223356--97223661 Score: 309
Period size: 94 Copynumber: 3.3 Consensus size: 93
97223346 TTGCCGATGT
* * * *
97223356 CATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTTTAA-GT-GCTGATGGATGTCCCAAACAT
1 CATGTCCCAGACATGGTCTTACACTGGCTATC--G--TAATGTGGCTGATGCATGTCCCAGACAT
* * *
97223419 GTCTTACACTAGCA--CAAAGCTTAGCCGATG-
62 GTCTTACACTAGCACTCATATC-TAGCCAATGC
* * * * * * * *
97223449 TATGTCTCAGACA-CGCCTTACACTGGCTACCATAATTGAGGCTGATGCATGTCCCAGACACGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTATCGTAA-TGTGGCTGATGCATGTCCCAGACATGTC
*
97223513 TTACACTGGCACTCATATCTACGCCAATGC
65 TTACACTAGCACTCATATCTA-GCCAATGC
*
97223543 CATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACATGTCA
1 CATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACATGTCT
* * * *
97223608 TACACTAGCCCTCATCTCAATGCTAATGC
66 TACACTAGCACTCATATCTA-GCCAATGC
97223637 CATGTCCCAGACATGGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
97223662 CGCTCTCACA
Statistics
Matches: 174, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
88 3 0.02
90 1 0.01
91 31 0.18
92 15 0.09
93 21 0.12
94 85 0.49
95 18 0.10
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACATGTCT
TACACTAGCACTCATATCTAGCCAATGC
Found at i:97231671 original size:14 final size:14
Alignment explanation
Indices: 97231652--97231678 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97231642 TATCATAATA
97231652 ATAATTAAGAACAC
1 ATAATTAAGAACAC
97231666 ATAATTAAGAACA
1 ATAATTAAGAACA
97231679 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Done.