Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 295 of 310
Found at i:97232057 original size:13 final size:13
Alignment explanation
Indices: 97232039--97232064 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97232029 GCTCGGCAGG
97232039 GACACGCCCGTGT
1 GACACGCCCGTGT
97232052 GACACGCCCGTGT
1 GACACGCCCGTGT
97232065 ATGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:97240493 original size:27 final size:26
Alignment explanation
Indices: 97240449--97240499 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
97240439 CTCGCTGCAA
*
97240449 TCTGGTGGCCTCGCCACATATATCTTT
1 TCTGGTGACCTCGCCACA-ATATCTTT
* *
97240476 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
97240500 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTTT
Found at i:97240568 original size:26 final size:27
Alignment explanation
Indices: 97240539--97240598 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
97240529 CCACATATAT
*
97240539 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
97240565 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
97240592 ATATCTG
1 ATATCTG
97240599 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:97243897 original size:158 final size:159
Alignment explanation
Indices: 97243689--97244010 Score: 565
Period size: 158 Copynumber: 2.0 Consensus size: 159
97243679 AACCTGCAGG
97243689 ATTTATGGATCTGATGAATCGAGTGTTCCAGCCATACTTGGATCGATTCGTGGTCATCTTTATCG
1 ATTTATGGATCTGATGAATCGAGTGTTCCAGCCATACTTGGATCGATTCGTGGTCATCTTTATCG
* * * *
97243754 ATGATATTCTGGTTTATTCTGAAACTGAGGAAAAGCATGATGACCATCTTCGTATTATGCTGCAA
66 ATGATATTCTGGTTTATTCTGAAACTAAGCAAAAGCATGATGACCACCTTCGTATTATGATGCAA
*
97243819 GTGTTGAGGGAGAAGGAGCTTTATGCG-A
131 GTGATGAGGGAGAAGGAGCTTTATGCGAA
97243847 ATTTATGGATCTGATGAATCGAGTGTTCCAGCCATACTTGGATCGATTCGTGGTCATCTTTATCG
1 ATTTATGGATCTGATGAATCGAGTGTTCCAGCCATACTTGGATCGATTCGTGGTCATCTTTATCG
* *
97243912 ATGATATTCTGGTTTATTCTGAAACTAAGCAAAAGCATGATGAGCACCTTCGTATTGTGATGCAA
66 ATGATATTCTGGTTTATTCTGAAACTAAGCAAAAGCATGATGACCACCTTCGTATTATGATGCAA
*
97243977 GTGATGAGGGAGAATGAGCTTTATGCGAA
131 GTGATGAGGGAGAAGGAGCTTTATGCGAA
97244006 ATTTA
1 ATTTA
97244011 GTAAGTGTGA
Statistics
Matches: 155, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
158 149 0.96
159 6 0.04
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (159 bp):
ATTTATGGATCTGATGAATCGAGTGTTCCAGCCATACTTGGATCGATTCGTGGTCATCTTTATCG
ATGATATTCTGGTTTATTCTGAAACTAAGCAAAAGCATGATGACCACCTTCGTATTATGATGCAA
GTGATGAGGGAGAAGGAGCTTTATGCGAA
Found at i:97247823 original size:27 final size:26
Alignment explanation
Indices: 97247785--97247860 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 26
97247775 TATATCTTAG
97247785 GCCACAATTATCTGATCTGGTGGCTCT-
1 GCCACAA-TATCTGATCTGGTGGC-CTA
*
97247812 GCCACATATATCTGTTCTGGTGGCCTA
1 GCCACA-ATATCTGATCTGGTGGCCTA
*
97247839 GCCACAATATCTGTGTCTGGTG
1 GCCACAATATCTG-ATCTGGTG
97247861 ACTTCGTCAC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
26 9 0.20
27 34 0.77
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (26 bp):
GCCACAATATCTGATCTGGTGGCCTA
Found at i:97247871 original size:27 final size:26
Alignment explanation
Indices: 97247785--97247877 Score: 89
Period size: 27 Copynumber: 3.5 Consensus size: 26
97247775 TATATCTTAG
* *
97247785 GCCACAATTATCTGATCTGGTGGCTCT-
1 GCCACAA-TATCTGTTCTGGTGAC-CTA
*
97247812 GCCACATATATCTGTTCTGGTGGCCTA
1 GCCACA-ATATCTGTTCTGGTGACCTA
* *
97247839 GCCACAATATCTGTGTCTGGTGACTTC
1 GCCACAATATCTGT-TCTGGTGACCTA
*
97247866 GTCACAATATCT
1 GCCACAATATCT
97247878 AGCAGCCTCG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
26 10 0.17
27 47 0.81
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACCTA
Found at i:97254001 original size:95 final size:95
Alignment explanation
Indices: 97253784--97254007 Score: 233
Period size: 95 Copynumber: 2.4 Consensus size: 95
97253774 GGGTTAAGTT
* *
97253784 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCTGATGTCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACCATCATCGAGGCTGATGTCATGTCCC
** * * * *
97253849 AGATGGTCTTACACTAGCTCTCGTGTATAA
66 AGAACGTCTTAAACTAGCACTCATATATAA
** * * *
97253879 GTGTTGATG-CATGTCACACACAT-GTCTTACACTGGCTACCATCATTGAGG-TCGATG-CATGT
1 --GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACCATCATCGAGGCT-GATGTCATGT
* *
97253940 CCCAGACACGTCTTAAACTGGCACTCATATCTACA
63 CCCAGA-ACGTCTTAAACTAGCACTCATATATA-A
97253975 -CCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
97254008 TCTCTCACAT
Statistics
Matches: 103, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
93 4 0.04
94 24 0.23
95 57 0.55
96 13 0.13
97 5 0.05
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACCATCATCGAGGCTGATGTCATGTCCC
AGAACGTCTTAAACTAGCACTCATATATAA
Found at i:97255616 original size:29 final size:29
Alignment explanation
Indices: 97255553--97255620 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
97255543 TAATCAACCG
97255553 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
97255582 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
97255611 CGCACACTTA
1 CGCACACTTA
97255621 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:97255732 original size:174 final size:174
Alignment explanation
Indices: 97255442--97255769 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
97255432 AACTCAAGGT
*
97255442 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
97255507 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
97255572 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
97255616 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
97255681 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
97255746 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
97255770 TGTACAATTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:97255761 original size:29 final size:30
Alignment explanation
Indices: 97255722--97255800 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
97255712 CTTAATAATC
97255722 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
97255752 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
97255781 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
97255801 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:97261691 original size:39 final size:40
Alignment explanation
Indices: 97261596--97261857 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
97261586 TTGAATGATG
*
97261596 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
97261634 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
97261675 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
97261714 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97261753 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
97261792 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
97261831 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
97261858 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:97264297 original size:47 final size:47
Alignment explanation
Indices: 97264245--97264693 Score: 627
Period size: 47 Copynumber: 9.6 Consensus size: 47
97264235 GATAATTGTG
* *
97264245 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCAGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
*
97264292 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CAGATGTGATGA
* * *
97264339 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
*
97264386 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CAGATGTGATGA
* * *
97264433 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
*
97264480 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CAGATGTGATGA
* * *
97264527 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
* *
97264574 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
* * * * * *
97264621 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA-ACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CAGATGTGATGA
*
97264668 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
97264694 TCCCGAAGGG
Statistics
Matches: 358, Mismatches: 37, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
46 3 0.01
47 350 0.98
48 5 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGA
Found at i:97264369 original size:94 final size:94
Alignment explanation
Indices: 97264245--97264693 Score: 736
Period size: 94 Copynumber: 4.8 Consensus size: 94
97264235 GATAATTGTG
* * * * *
97264245 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
97264310 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCGAATGGCCAATGTGATGA
97264339 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
97264404 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCGAATGGCCAATGTGATGA
97264433 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
97264498 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCGAATGGCCAATGTGATGA
97264527 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
97264592 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCGAATGGCCAATGTGATGA
* * * * * * * * * *
97264621 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
97264686 GTGATAAG
66 GTGATAAG
97264694 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 336 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:97264390 original size:141 final size:141
Alignment explanation
Indices: 97264245--97264693 Score: 693
Period size: 141 Copynumber: 3.2 Consensus size: 141
97264235 GATAATTGTG
* *
97264245 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
97264310 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATAGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
*
97264375 CGATGTGATGA
131 CAATGTGATGA
*
97264386 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA-ATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CAGATGTGATGAATGTGAAAGTGTATATA
* *
97264450 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
65 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
97264515 CCAATGTGATGA
130 CCAATGTGATGA
* * *
97264527 ATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATAT
* * * *
97264592 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
97264657 CAACGTGATGG
131 CAATGTGATGA
*
97264668 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
97264694 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
140 1 0.00
141 278 0.99
142 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGA
Found at i:97268276 original size:85 final size:86
Alignment explanation
Indices: 97268119--97268276 Score: 239
Period size: 85 Copynumber: 1.8 Consensus size: 86
97268109 CTAGATTATC
** * *
97268119 GTATAAGACTGTGTCTGGGACACTGGCATCGATTTGAAATTTACATGTAAGACCATGTCTAGGAC
1 GTATAAGACCCTGTCTGGGACACAGGCATCGATCTGAAATTTACATGTAAGACCATGTCTAGGAC
97268184 ATCGGCATCGTATCTGTTTTT
66 ATCGGCATCGTATCTGTTTTT
*
97268205 GTATAAGACCCTGTCTGGGACAGAGGCATCGATACTG-AA-TTACATGTAAGACCATGTCTAGGA
1 GTATAAGACCCTGTCTGGGACACAGGCATCGAT-CTGAAATTTACATGTAAGACCATGTCTAGGA
*
97268268 CATTGGCAT
65 CATCGGCAT
97268277 TGTGCTTGTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
85 32 0.49
86 31 0.48
87 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (86 bp):
GTATAAGACCCTGTCTGGGACACAGGCATCGATCTGAAATTTACATGTAAGACCATGTCTAGGAC
ATCGGCATCGTATCTGTTTTT
Found at i:97269615 original size:45 final size:45
Alignment explanation
Indices: 97269556--97269711 Score: 179
Period size: 45 Copynumber: 3.4 Consensus size: 45
97269546 CAATGTCGAT
* * * * **
97269556 GTCCCAGACATGGTCTTACATGTAACCAAATATATCGATGCCAAC
1 GTCCCAAACGTGGTCTTACATGAAAACACTTATATCGATGCCAAC
*
97269601 GTCCCAAACGTGGTCTTACACGAAAACACTTATATCGATGCCAAC
1 GTCCCAAACGTGGTCTTACATGAAAACACTTATATCGATGCCAAC
* * *
97269646 GTCCAAAAACGTGGTCTTCCACT-AAAACACTTATATCGATGCTAAC
1 GTCC-CAAACGTGGTCTTACA-TGAAAACACTTATATCGATGCCAAC
* *
97269692 ATCCCAGACGTGGTCTTACA
1 GTCCCAAACGTGGTCTTACA
97269712 CGAAGGCACA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
45 55 0.59
46 39 0.41
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (45 bp):
GTCCCAAACGTGGTCTTACATGAAAACACTTATATCGATGCCAAC
Found at i:97269673 original size:46 final size:45
Alignment explanation
Indices: 97269586--97269715 Score: 188
Period size: 46 Copynumber: 2.9 Consensus size: 45
97269576 TGTAACCAAA
*
97269586 TATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACACT
1 TATATCGATGCCAACGTCCAAAACGTGGTCTTACACGAAAACACT
* *
97269631 TATATCGATGCCAACGTCCAAAAACGTGGTCTTCCACTAAAACACT
1 TATATCGATGCCAACGTCC-AAAACGTGGTCTTACACGAAAACACT
* * * *
97269677 TATATCGATGCTAACATCCCAGACGTGGTCTTACACGAA
1 TATATCGATGCCAACGTCCAAAACGTGGTCTTACACGAA
97269716 GGCACATATC
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
45 35 0.47
46 40 0.53
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (45 bp):
TATATCGATGCCAACGTCCAAAACGTGGTCTTACACGAAAACACT
Found at i:97270273 original size:15 final size:15
Alignment explanation
Indices: 97270250--97270280 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97270240 TCAAAAATTC
97270250 CAATACAAAACATAT
1 CAATACAAAACATAT
*
97270265 CAATCCAAAACATAT
1 CAATACAAAACATAT
97270280 C
1 C
97270281 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:97270644 original size:23 final size:23
Alignment explanation
Indices: 97270574--97270652 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 23
97270564 TTACAAATAT
*
97270574 AACCTTTATAATTAAATAACTAA
1 AACCTTTATAATTAAGTAACTAA
* * * * *
97270597 AACATATAT-ATCAAG-GA-TAT
1 AACCTTTATAATTAAGTAACTAA
97270617 AACCTTTATAATTAAGTAACTAA
1 AACCTTTATAATTAAGTAACTAA
97270640 AACCTTTATAATT
1 AACCTTTATAATT
97270653 TAACCACCAA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
20 9 0.21
21 6 0.14
22 5 0.12
23 22 0.52
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (23 bp):
AACCTTTATAATTAAGTAACTAA
Found at i:97273347 original size:15 final size:15
Alignment explanation
Indices: 97273315--97273357 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
97273305 TATTTTTTTC
97273315 ATTTTCTCTTCTTC-T
1 ATTTT-TCTTCTTCTT
97273330 ATTTTTCTTCTTCTT
1 ATTTTTCTTCTTCTT
97273345 ATTTTTCTT-TTCT
1 ATTTTTCTTCTTCT
97273358 CCCCTATAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTTCTTCTTCTT
Found at i:97276717 original size:43 final size:41
Alignment explanation
Indices: 97276621--97276775 Score: 130
Period size: 43 Copynumber: 3.6 Consensus size: 41
97276611 ATCGAGATGA
* * * * *
97276621 GATTACATGTAAGACCATGTTTGGGACATTGACATTGTATT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATC
* *
97276662 GTAATTAAGTGTAATACCATGTCTGGGACATTGGCATCGTTAATC
1 G--ATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T-ATC
* * * *
97276707 GATTACGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAT-C
* * *
97276750 GATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
97276776 TATGGAATTG
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 84 0.92
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (41 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATC
Found at i:97279155 original size:38 final size:38
Alignment explanation
Indices: 97278326--97279138 Score: 1610
Period size: 38 Copynumber: 21.4 Consensus size: 38
97278316 GACTATATGA
97278326 AGAGATTATG-CCAGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCC-GGGTAAAGACCTGATGGCTATGTAC
97278364 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278402 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278440 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278478 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278516 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278554 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278592 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278630 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278668 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278706 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278744 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278782 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278820 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278858 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278896 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278934 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97278972 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97279010 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97279048 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97279086 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
1 AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
97279124 AGAGATTATGTCCGG
1 AGAGATTATGTCCGG
97279139 ATTAAAATTC
Statistics
Matches: 774, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
38 772 1.00
39 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (38 bp):
AGAGATTATGTCCGGGTAAAGACCTGATGGCTATGTAC
Found at i:97279591 original size:40 final size:40
Alignment explanation
Indices: 97279192--97279579 Score: 589
Period size: 40 Copynumber: 9.7 Consensus size: 40
97279182 AGGTCTCGAC
* *
97279192 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
*
97279231 GATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
*
97279271 GATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
*
97279311 GATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
*
97279351 GATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
* *
97279391 GATGTATCCGGGCTAAGTTTCGGAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
* *
97279431 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
97279471 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
* * *** *
97279511 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
* * * *
97279551 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTTCCGAAGAGCA
97279580 ATCATGCTGG
Statistics
Matches: 327, Mismatches: 21, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 4 0.01
40 323 0.99
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
Found at i:97289289 original size:45 final size:45
Alignment explanation
Indices: 97289188--97289314 Score: 156
Period size: 45 Copynumber: 2.9 Consensus size: 45
97289178 TTTTCTCAAA
* *
97289188 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
*
97289230 TCACCAGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
* *
97289274 CTCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
97289315 ATCAAGTCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
42 10 0.14
43 14 0.19
44 8 0.11
45 41 0.55
46 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:97289692 original size:43 final size:43
Alignment explanation
Indices: 97289644--97289841 Score: 279
Period size: 43 Copynumber: 4.6 Consensus size: 43
97289634 CCGGCATTAC
** *
97289644 GCCTGCTAGGCACGAAATCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
97289687 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * * * *
97289730 GCCTACTAGGCATGAAGGCCCCAATACACATCCCCGACACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* **
97289773 GCCTGCAAGGCACGAAGGCCCGAATACACATCACCGGCATTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
97289816 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
97289842 TAATACCAGC
Statistics
Matches: 136, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 136 1.00
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:97295142 original size:31 final size:31
Alignment explanation
Indices: 97295104--97295182 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
97295094 TTTAACGGTT
97295104 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
97295135 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* **
97295166 ATTGGGCTAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
97295183 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:97295284 original size:42 final size:42
Alignment explanation
Indices: 97295206--97295298 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
97295196 TGGCCCTTAG
* ** *
97295206 GCCCATTTCAATATAACATGTAATGTCAAAGGATGTATGCAA
1 GCCCATTTCAATATAACATGAAATACCAAAGAATGTATGCAA
* * *
97295248 GCCCATTTCAATATCACATGAAATACCGATGAATGTATGCAA
1 GCCCATTTCAATATAACATGAAATACCAAAGAATGTATGCAA
*
97295290 GCCTATTTC
1 GCCCATTTC
97295299 GGAGACTACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATAACATGAAATACCAAAGAATGTATGCAA
Found at i:97295493 original size:26 final size:26
Alignment explanation
Indices: 97295441--97295564 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
97295431 CCTCTTTAAT
*
97295441 AACTGGGGCA-AAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
97295466 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
97295492 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
97295518 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
97295544 AATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
97295565 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 10 0.11
26 78 0.89
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:97295518 original size:52 final size:52
Alignment explanation
Indices: 97295441--97295564 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
97295431 CCTCTTTAAT
* *
97295441 AACTGGGGCA-AAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
97295492 AACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
*
97295544 AATTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
97295565 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 10 0.14
52 59 0.86
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
Found at i:97296420 original size:27 final size:27
Alignment explanation
Indices: 97296390--97296467 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
97296380 ACAAGGGTAG
97296390 TACGGTCACTTTACCCTATAGGGGCTT
1 TACGGTCACTTTACCCTATAGGGGCTT
*
97296417 TACGATCACTTTACCCTATAGGGGCTT
1 TACGGTCACTTTACCCTATAGGGGCTT
**
97296444 TACGGTCTTTTTA-CCTAATAGGGG
1 TACGGTCACTTTACCCT-ATAGGGG
97296468 TATTTTAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
TACGGTCACTTTACCCTATAGGGGCTT
Found at i:97296542 original size:27 final size:27
Alignment explanation
Indices: 97296489--97296838 Score: 235
Period size: 27 Copynumber: 13.0 Consensus size: 27
97296479 TTTCATCCTA
* * * *
97296489 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
97296516 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * *
97296543 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-C
* *
97296572 CAAGGGTATTTCT-GTAACTTTATAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
97296599 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
97296626 TAAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
97296653 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * * *
97296680 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*** * *
97296707 TGCGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
97296734 C-AGTGGTATTTTAGCAA-TTTATAGA-
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
97296759 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
97296786 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
97296813 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
97296839 TTGAGGGTAA
Statistics
Matches: 262, Mismatches: 49, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
25 12 0.05
26 19 0.07
27 203 0.77
28 15 0.06
29 13 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:97296694 original size:81 final size:81
Alignment explanation
Indices: 97296600--97296833 Score: 321
Period size: 81 Copynumber: 2.9 Consensus size: 81
97296590 TTTATAAATC
* *
97296600 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTT
*
97296665 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
* *
97296681 AGGGGTATTTTGGTAATTTTACAAATTGCGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTT
* * *
97296746 AGCAA-TTTATAGACT
66 AGTAATTTTACAAACT
** * **
97296761 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAG-GGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC-AGTGGTATTT
97296824 TAGTAATTTT
65 TAGTAATTTT
97296834 GTAAATTGAG
Statistics
Matches: 135, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 57 0.42
80 14 0.10
81 64 0.47
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTT
AGTAATTTTACAAACT
Found at i:97296857 original size:27 final size:27
Alignment explanation
Indices: 97296825--97296955 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
97296815 AGGGTATTTT
* * *
97296825 AGTAATTTTGTAAATTGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
97296852 AATAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
97296879 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
97296906 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
97296933 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
97296956 CTTTGGTAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:97298468 original size:43 final size:43
Alignment explanation
Indices: 97298396--97298520 Score: 130
Period size: 45 Copynumber: 2.9 Consensus size: 43
97298386 TGGACTTTTC
* * *
97298396 TCAAATCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCGATA
1 TCAATTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA-A
97298438 TCAATTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAA
1 TCAATTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAA
** * *
97298481 T-AGTATCTCACCGGCATTATAGTTTGCTAAGCTCAAAGGC
1 TCA--AT-TCACCGGCATTATAGCCTGCTAGGCTCGAAGGC
97298521 TCAAATAATC
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 16 0.23
43 16 0.23
44 10 0.14
45 29 0.41
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (43 bp):
TCAATTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAA
Found at i:97298912 original size:43 final size:43
Alignment explanation
Indices: 97298838--97299026 Score: 274
Period size: 43 Copynumber: 4.4 Consensus size: 43
97298828 ACATGTCATT
* *
97298838 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
97298881 TCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACTCA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
97298924 TCCCCGGCACTAAGCCTGCTAGGTACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
97298967 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATA-A
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
97299009 T-ACCAGCACTAGGCCTGC
1 TCACCGGCACTAAGCCTGC
97299027 GGGATTTATC
Statistics
Matches: 131, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.02
43 114 0.87
ACGTcount: A:0.28, C:0.34, G:0.24, T:0.14
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:97299063 original size:38 final size:38
Alignment explanation
Indices: 97298998--97299081 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
97298988 GGCACGAAGG
* * *
97298998 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
97299036 CCCGGATATTATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
97299074 CCCGAATA
1 CCCGAATA
97299082 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:97304150 original size:42 final size:43
Alignment explanation
Indices: 97304091--97304200 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
97304081 TATCCACAAT
* **
97304091 GAACTTGGACCTCTCAACGAGCTCGGATGC-CACATAGATCAC
1 GAACTTGGACCACTCAACGAGCTCAAATGCTCACATAGATCAC
* * * *
97304133 GAACTTGGACCACTCAACAAGTTCAAATTCTCACATATATCAC
1 GAACTTGGACCACTCAACGAGCTCAAATGCTCACATAGATCAC
* *
97304176 GAACTCGGACTACTCAACGAGCTCA
1 GAACTTGGACCACTCAACGAGCTCA
97304201 GATTTCTAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (43 bp):
GAACTTGGACCACTCAACGAGCTCAAATGCTCACATAGATCAC
Found at i:97307373 original size:15 final size:15
Alignment explanation
Indices: 97307332--97307391 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
97307322 TATAGATAAC
* * *
97307332 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
97307347 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
* *
97307362 GATAAATCCAAGATA
1 AAGAAATCCAAGATA
97307377 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
97307392 CAATATCATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.55, C:0.13, G:0.17, T:0.15
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:97308730 original size:18 final size:18
Alignment explanation
Indices: 97308675--97308733 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
97308665 TAACCCATTT
*
97308675 CAGTAACAATAATCAGTG
1 CAGTAACAATAATCAGTA
* * * *
97308693 GAGTAACCATGATCAATA
1 CAGTAACAATAATCAGTA
*
97308711 CAGTAACAATAATCCGTA
1 CAGTAACAATAATCAGTA
97308729 CAGTA
1 CAGTA
97308734 TGCAAACAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (18 bp):
CAGTAACAATAATCAGTA
Found at i:97308958 original size:36 final size:36
Alignment explanation
Indices: 97308911--97308984 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
97308901 AAGCCATTAG
* * *
97308911 TAGGTCCACAGTCGTTTTGTGCGACCCGTGCAACCT
1 TAGGTCCACAGTCGTCTTGGGCGACCCATGCAACCT
* *
97308947 TAGGTCTACAGTCGTCTTGGGCGACCCATGCGACCT
1 TAGGTCCACAGTCGTCTTGGGCGACCCATGCAACCT
97308983 TA
1 TA
97308985 TCAATATAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.27
Consensus pattern (36 bp):
TAGGTCCACAGTCGTCTTGGGCGACCCATGCAACCT
Found at i:97309205 original size:27 final size:27
Alignment explanation
Indices: 97309128--97309216 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
97309118 GGAAAATCAG
* *
97309128 TCATTTTACCTTACAGGGGTATTAC-A
1 TCATTTTACCCTACAGGGGTATTTCGA
*
97309154 GTCATTTTACCCTATAGGGGTATTTCGA
1 -TCATTTTACCCTACAGGGGTATTTCGA
97309182 TCATTTTACCCTACAGGGGTATTTCGA
1 TCATTTTACCCTACAGGGGTATTTCGA
97309209 TCATTTTA
1 TCATTTTA
97309217 TCACAACGGC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGA
Found at i:97309265 original size:27 final size:27
Alignment explanation
Indices: 97309208--97309333 Score: 184
Period size: 27 Copynumber: 4.7 Consensus size: 27
97309198 GGGTATTTCG
*
97309208 ATCATTTTATCAC--AACGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
*
97309233 ATCATTTTATCACATAAGGGAAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
*
97309260 ATCATTTTATCACATAAGGGCAAAATT
1 ATCATTTTATCACATAAGGGCAAAATC
* *
97309287 GTCATTTTATCACATAAGGGGAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
*
97309314 ATCATTTTATCACACAAGGG
1 ATCATTTTATCACATAAGGG
97309334 TTCAGGTACG
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 13 0.14
27 77 0.86
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGCAAAATC
Found at i:97315269 original size:35 final size:35
Alignment explanation
Indices: 97315223--97315293 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
97315213 ACAGGTTAGT
97315223 GGCTGAATATGAGGCTGAATTTTTACGACTGAACC
1 GGCTGAATATGAGGCTGAATTTTTACGACTGAACC
* *
97315258 GGCTGAATATGAGTCTGAATTTTTACGGCTGAACC
1 GGCTGAATATGAGGCTGAATTTTTACGACTGAACC
97315293 G
1 G
97315294 CTATGCACGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (35 bp):
GGCTGAATATGAGGCTGAATTTTTACGACTGAACC
Found at i:97322372 original size:20 final size:20
Alignment explanation
Indices: 97322347--97322386 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
97322337 TTGATCCAAA
97322347 TTAGAACTTTTTCAATTTCT
1 TTAGAACTTTTTCAATTTCT
*
97322367 TTAGAACTTTTTCCATTTCT
1 TTAGAACTTTTTCAATTTCT
97322387 ACCTAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.17, G:0.05, T:0.55
Consensus pattern (20 bp):
TTAGAACTTTTTCAATTTCT
Found at i:97322812 original size:29 final size:29
Alignment explanation
Indices: 97322768--97322829 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
97322758 ACGGCCAAGG
**
97322768 CACACGCCCGTATGCTAGGCCGTGTCCAT
1 CACACGCCCGTATGCTAGGCCGTACCCAT
*
97322797 CACACGCCCGTGTGCTAGGCCGTACCCAT
1 CACACGCCCGTATGCTAGGCCGTACCCAT
97322826 CACA
1 CACA
97322830 TGGCCAAGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.19, C:0.40, G:0.23, T:0.18
Consensus pattern (29 bp):
CACACGCCCGTATGCTAGGCCGTACCCAT
Found at i:97324725 original size:27 final size:27
Alignment explanation
Indices: 97324695--97324872 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97324685 ATATTGAGTC
* * * *
97324695 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97324722 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97324749 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97324777 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97324804 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97324831 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97324858 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97324873 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97324834 original size:82 final size:81
Alignment explanation
Indices: 97324716--97324871 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97324706 TGCTATATAA
* *
97324716 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97324781 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97324798 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97324862 CACTTAGTGC
65 CACTTAGTGC
97324872 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97332787 original size:27 final size:27
Alignment explanation
Indices: 97332757--97332934 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
97332747 ATATTGAGCC
* * * *
97332757 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
97332784 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
97332811 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
97332839 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97332866 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97332893 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97332920 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97332935 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97332896 original size:82 final size:81
Alignment explanation
Indices: 97332778--97332933 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
97332768 TGCTATATAA
* * *
97332778 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
97332843 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97332860 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97332924 CACTTAGTGC
65 CACTTAGTGC
97332934 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97335091 original size:46 final size:45
Alignment explanation
Indices: 97335040--97335206 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 45
97335030 TCTCGTAGCT
*
97335040 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTAC-TCTCAAGGCC
* *
97335086 GATGCATGTCCCAGACATGTCTTACACTAGCGCTTA-TCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTTACTCTCAAGGCC
* * *
97335132 GATGCCATGTCCTAGACATGGCCTTACACTGGC-T-CTCATAATATGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACTC-TCA-A-GGCC
*
97335180 GATGCATGTCCCAGACATTTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
97335207 CAGCTAACAC
Statistics
Matches: 102, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 3 0.03
46 50 0.49
47 29 0.28
48 20 0.20
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACTCTCAAGGCC
Found at i:97342049 original size:42 final size:42
Alignment explanation
Indices: 97341937--97342098 Score: 175
Period size: 42 Copynumber: 3.8 Consensus size: 42
97341927 TACCGTACCA
* * * * *
97341937 ATGCCATATCCTAGATATAGTTTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* *
97341979 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
97342022 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATAGT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATA-TCG
* * *
97342064 ATGCCACAACCCAGATATGGTCTTACACGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCT
97342099 TAGTAACCCT
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 70 0.68
43 33 0.32
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:97342067 original size:85 final size:84
Alignment explanation
Indices: 97341937--97342098 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 84
97341927 TACCGTACCA
* * * *
97341937 ATGCCATATCCTAGATATAGTTTTACATGTAATCTCGTATCGATGCCA-ATAGCCCAGCTATGGT
1 ATGCCATATCCTAGATATAGTCTTACACGTAATCTCATATCGATGCCACA-A-CCCAGATATGGT
97342001 CTTACACGAAGTCTCATATCG
64 CTTACACGAAGTCTCATATCG
* *
97342022 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATAGT-GATGCCACAACCCAGATATGGTC
1 ATGCCATATCCTAGATATAGTCTTACACGTAATCTCATA-TCGATGCCACAACCCAGATATGGTC
*
97342086 TTACACGTAGTCT
65 TTACACGAAGTCT
97342099 TAGTAACCCT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 24 0.35
85 42 0.62
86 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCTAGATATAGTCTTACACGTAATCTCATATCGATGCCACAACCCAGATATGGTCT
TACACGAAGTCTCATATCG
Found at i:97347875 original size:110 final size:110
Alignment explanation
Indices: 97347676--97348133 Score: 616
Period size: 110 Copynumber: 4.2 Consensus size: 110
97347666 ACATAATTTT
* * *
97347676 ATGTATCGTGATCTGCCATTTTGATCCATACACTATCGAAGACTACACCATGAATATGAAA-ATA
1 ATGTATCCTGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATAT-AAATATA
* *
97347740 GACATATTATGCCATGGGTCTTAACCACATGGTTTTACACACATTC
65 GACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTC
* * * * * *
97347786 TTGTATCGTGATATACCATTTTGATTCATACACTATCGAAGGCTACACCATGAATATAAATATAG
1 ATGTATCCTGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAG
97347851 ACATATCATGCCATGGGT-TATAACCACATGGTCTTACACACATTC
66 ACATATCATGCCATGGGTCT-TAACCACATGGTCTTACACACATTC
* * * * *
97347896 ATGTACCCTAATCTGCCATTTCAATTCGTACACTATCGAAGACTACACCATGAATATTAATATAG
1 ATGTATCCTGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAG
* *
97347961 ACATATCATGCCATGAGTCTTAACCACATGAG-CTTACAAACATTC
66 ACATATCATGCCATGGGTCTTAACCACATG-GTCTTACACACATTC
* * * * * *
97348006 ATGTATCCTGATTTTCCATTTCGATTCATACACTATCAAAGGCTACACCATGAATATAAATACAA
1 ATGTATCCTGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAG
* *
97348071 ACATATCACGCCATGGGTCCTAACCACATGGTCTTACACACATTC
66 ACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTC
* *
97348116 ATGTATCATAATCTGCCA
1 ATGTATCCTGATCTGCCA
97348134 ATCTGGTTAG
Statistics
Matches: 304, Mismatches: 39, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
109 5 0.02
110 297 0.98
111 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (110 bp):
ATGTATCCTGATCTGCCATTTCGATTCATACACTATCGAAGACTACACCATGAATATAAATATAG
ACATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTC
Found at i:97350921 original size:47 final size:47
Alignment explanation
Indices: 97350845--97350963 Score: 166
Period size: 47 Copynumber: 2.5 Consensus size: 47
97350835 CTTCGGGACT
* * * * *
97350845 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
97350892 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
97350939 TATCACATATATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
97350964 ACCAACCCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:97351225 original size:40 final size:39
Alignment explanation
Indices: 97351181--97351279 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
97351171 AGATATAGCT
* **
97351181 ACTCGTTCAAATGCCTTCGGGACATAGCCC-GGTTATAGTA
1 ACTCGTACAAATGCCTTCGGG-CATAGCCCAGAAT-TAGTA
* * *
97351221 ACTCGCACAAATGCCTTCGAGCTTAGCCCAGAATTAGTA
1 ACTCGTACAAATGCCTTCGGGCATAGCCCAGAATTAGTA
*
97351260 TCTCGTACAAATGCCTTCGG
1 ACTCGTACAAATGCCTTCGG
97351280 ATCTTAATCC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
39 29 0.59
40 20 0.41
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
ACTCGTACAAATGCCTTCGGGCATAGCCCAGAATTAGTA
Found at i:97354428 original size:37 final size:37
Alignment explanation
Indices: 97354378--97354457 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
97354368 CTTATTACGA
* *
97354378 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
97354415 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
97354452 GGTCTT
1 AGTCTT
97354458 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:97354647 original size:47 final size:47
Alignment explanation
Indices: 97354588--97354931 Score: 478
Period size: 47 Copynumber: 7.4 Consensus size: 47
97354578 TATCACATTT
* * *
97354588 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
97354633 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
97354680 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
97354727 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * * *
97354774 GTATACGTGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
97354821 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
97354868 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
97354915 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
97354932 TATTCAATTA
Statistics
Matches: 269, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 261 0.97
48 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:97360478 original size:33 final size:33
Alignment explanation
Indices: 97360436--97360500 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
97360426 ACAAGGCAAG
97360436 ATGTCCATTTTGGAGTACGAACGTGAATTCGTA
1 ATGTCCATTTTGGAGTACGAACGTGAATTCGTA
*
97360469 ATGTCCATTTTGGAGTACGAGCGTGAATTCGT
1 ATGTCCATTTTGGAGTACGAACGTGAATTCGT
97360501 CAAACTTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (33 bp):
ATGTCCATTTTGGAGTACGAACGTGAATTCGTA
Found at i:97365658 original size:22 final size:22
Alignment explanation
Indices: 97365630--97365702 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
97365620 TCACTAAATC
*
97365630 GCAACATGGTATGATTGATGTT
1 GCAACATGGTATGATCGATGTT
*
97365652 GCAACATGGTATGATCAATGTT
1 GCAACATGGTATGATCGATGTT
*
97365674 GCAACATGGTATGATCGATGTC
1 GCAACATGGTATGATCGATGTT
97365696 GCAACAT
1 GCAACAT
97365703 AAGGAGCAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (22 bp):
GCAACATGGTATGATCGATGTT
Found at i:97367347 original size:31 final size:31
Alignment explanation
Indices: 97367309--97367372 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
97367299 CCTTTTCATA
*
97367309 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATGTCATAACACTGGGCCGAAGCCT
**
97367340 TTTCATATGTCATATTACTGGGCCGAAGCCT
1 TTTCATATGTCATAACACTGGGCCGAAGCCT
97367371 TT
1 TT
97367373 ACTATGAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (31 bp):
TTTCATATGTCATAACACTGGGCCGAAGCCT
Found at i:97367630 original size:24 final size:24
Alignment explanation
Indices: 97367580--97367683 Score: 183
Period size: 24 Copynumber: 4.3 Consensus size: 24
97367570 CTAGAGGCCT
97367580 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
97367604 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
97367628 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
97367652 AGCCATTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
97367676 AGCCCTTT
1 AGCCCTTT
97367684 ATCATCGTGG
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
23 18 0.23
24 59 0.77
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:97368167 original size:24 final size:24
Alignment explanation
Indices: 97368117--97368248 Score: 178
Period size: 25 Copynumber: 5.4 Consensus size: 24
97368107 CTGGAGGCCT
97368117 AGCCTCTTTTAATAACT-GGAGCA-A
1 AGCC-CTTTTAATAACTAGG-GCATA
97368141 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
97368165 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
* *
97368189 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTAGGGCATA
* *
97368214 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTAGGGCATA
97368239 AGCCCTTTTA
1 AGCCCTTTTA
97368249 CACTTCCTCC
Statistics
Matches: 102, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
23 15 0.15
24 40 0.39
25 47 0.46
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:97368212 original size:49 final size:48
Alignment explanation
Indices: 97368094--97368246 Score: 177
Period size: 50 Copynumber: 3.1 Consensus size: 48
97368084 AGCATAGCTG
*
97368094 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGAGCA-AAGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTGG-GCATAAGCC
* *
97368145 CTTT-TAATAACTAGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCATAAGCC
*
97368193 CTTTATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTT-TAATAACT-GGGCATAAGCC
97368243 CTTT
1 CTTT
97368247 TACACTTCCT
Statistics
Matches: 90, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
47 19 0.21
48 22 0.24
49 22 0.24
50 23 0.26
51 4 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (48 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCC
Found at i:97368322 original size:20 final size:20
Alignment explanation
Indices: 97368297--97368334 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
97368287 TTATGAATAC
97368297 ATCATGTGCATATCATACGT
1 ATCATGTGCATATCATACGT
97368317 ATCATGTGCATATCATAC
1 ATCATGTGCATATCATAC
97368335 ATACCATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACGT
Found at i:97368342 original size:20 final size:20
Alignment explanation
Indices: 97368299--97368343 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
97368289 ATGAATACAT
* *
97368299 CATGTGCATATCATACGTAT
1 CATGTGCATATCATACATAC
97368319 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
97368339 CATGT
1 CATGT
97368344 TTCTCACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:97368422 original size:25 final size:25
Alignment explanation
Indices: 97368380--97368427 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97368370 ATATATAAAC
* * *
97368380 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97368405 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97368428 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97375586 original size:24 final size:24
Alignment explanation
Indices: 97375536--97375667 Score: 169
Period size: 25 Copynumber: 5.4 Consensus size: 24
97375526 CTGGAGGCCT
97375536 AGCCTCTTTTAATAACT-GGAGCA-A
1 AGCC-CTTTTAATAACTAGG-GCATA
97375560 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
97375584 AGCCCTTTTAATAACTAGGGCAGA
1 AGCCCTTTTAATAACTAGGGCATA
* *
97375608 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTAGGGCATA
* *
97375633 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTAGGGCATA
97375658 AGCCCTTTTA
1 AGCCCTTTTA
97375668 CACTTCATCC
Statistics
Matches: 100, Mismatches: 5, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
23 15 0.15
24 39 0.39
25 46 0.46
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:97375631 original size:49 final size:47
Alignment explanation
Indices: 97375513--97375665 Score: 166
Period size: 48 Copynumber: 3.1 Consensus size: 47
97375503 AGCATAGCTG
*
97375513 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGAGCAAAGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTGG-GCAAAGCC
* *
97375564 CTTT-TAATAACTAGGGCATAAGCCCTTTTAATAACTAGGGCAGAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCA-AAGCC
*
97375612 CTTTATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTT-TAATAACT-GGGCA-AAGCC
97375662 CTTT
1 CTTT
97375666 TACACTTCAT
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
47 19 0.21
48 22 0.25
49 22 0.25
50 22 0.25
51 4 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (47 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGCAAAGCC
Found at i:97375737 original size:20 final size:20
Alignment explanation
Indices: 97375712--97375778 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
97375702 TTATGAATAC
97375712 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
97375732 ATCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
*
97375752 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
97375772 ACCATGT
1 ATCATGT
97375779 TTATCACAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:97382089 original size:68 final size:68
Alignment explanation
Indices: 97381942--97382097 Score: 165
Period size: 68 Copynumber: 2.2 Consensus size: 68
97381932 AGCCAATTTG
* * * **
97381942 TCTCGTAGCTCTCTTGTCTACATGGTGTTCTTCACTTGGAATCACGCATGTGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACGCATGTGACCTAGCTACACA
*
97382007 TATC
65 TATA
*
97382011 TCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACGCATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACGCATGTGACCTAGCTAC-
97382073 ACATAGTA
62 ACATA-TA
*
97382081 TCTCGTAGCTTTCTTGT
1 TCTCGTAGCTCTCTTGT
97382098 ACACATGATG
Statistics
Matches: 74, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
68 36 0.49
69 6 0.08
70 6 0.08
71 26 0.35
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACGCATGTGACCTAGCTACACAT
ATA
Found at i:97390521 original size:14 final size:15
Alignment explanation
Indices: 97390488--97390525 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
97390478 ATATTATTAC
97390488 AATTATAATAATAAAT
1 AATT-TAATAATAAAT
*
97390504 AATTTAAT-ATATAT
1 AATTTAATAATAAAT
97390518 AATTTAAT
1 AATTTAAT
97390526 GCTTAATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 4 0.19
16 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTAATAATAAAT
Found at i:97393562 original size:29 final size:29
Alignment explanation
Indices: 97393520--97393576 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
97393510 AAAGTTAGAC
*
97393520 AAACTAATGAACCAAAAACATAGACGATA
1 AAACTAATGAACCAAAAACATAAACGATA
97393549 AAACTAATGAACCAAAAACATAAACGAT
1 AAACTAATGAACCAAAAACATAAACGAT
97393577 TCCAAATCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.60, C:0.18, G:0.09, T:0.14
Consensus pattern (29 bp):
AAACTAATGAACCAAAAACATAAACGATA
Found at i:97394634 original size:17 final size:17
Alignment explanation
Indices: 97394601--97394634 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
97394591 ATTGAGACTA
97394601 GTCATATATATATACAT
1 GTCATATATATATACAT
97394618 GTCATGATATATA-ACAT
1 GTCAT-ATATATATACAT
97394635 TCTCTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (17 bp):
GTCATATATATATACAT
Found at i:97396652 original size:30 final size:30
Alignment explanation
Indices: 97396618--97396678 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97396608 TCCTTAACTC
97396618 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
97396648 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
97396678 A
1 A
97396679 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:97411546 original size:12 final size:12
Alignment explanation
Indices: 97411529--97411553 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97411519 ACCCAAACAC
97411529 AAAAAAAAAACT
1 AAAAAAAAAACT
97411541 AAAAAAAAAACT
1 AAAAAAAAAACT
97411553 A
1 A
97411554 GCCACCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAAAAAAAAACT
Found at i:97411894 original size:12 final size:11
Alignment explanation
Indices: 97411870--97411899 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
97411860 CATTTTGTTC
97411870 TTTAGTTTCTTT
1 TTTA-TTTCTTT
97411882 TTTATTTCTTT
1 TTTATTTCTTT
97411893 TTTATTT
1 TTTATTT
97411900 TTGTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTATTTCTTT
Found at i:97415751 original size:19 final size:21
Alignment explanation
Indices: 97415706--97415744 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
97415696 TTTCTCTTAA
97415706 ATTTTTATTATTATTTTATAT
1 ATTTTTATTATTATTTTATAT
97415727 ATTTTTA-TA-TATTTTATA
1 ATTTTTATTATTATTTTATA
97415745 GTTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTTATTATTATTTTATAT
Found at i:97419287 original size:21 final size:21
Alignment explanation
Indices: 97419248--97419315 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
97419238 GTTGTATAGA
*
97419248 GTTTA-TGGTTTTAGTGTTTAG
1 GTTTAGTGG-TTTAGAGTTTAG
97419269 GATTTAG-GGTTTAGAGTTTAG
1 G-TTTAGTGGTTTAGAGTTTAG
* *
97419290 GGTTAGTGG-TTGGAGTTTAGG
1 GTTTAGTGGTTTAGAGTTTA-G
97419311 GTTTA
1 GTTTA
97419316 AGGTGTAAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 13 0.33
21 20 0.51
22 6 0.15
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (21 bp):
GTTTAGTGGTTTAGAGTTTAG
Found at i:97419314 original size:7 final size:7
Alignment explanation
Indices: 97419257--97419315 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
97419247 AGTTTATGGT
*
97419257 TTTAGTG
1 TTTAGGG
*
97419264 TTTAGGA
1 TTTAGGG
97419271 TTTAGGG
1 TTTAGGG
*
97419278 TTTAGAG
1 TTTAGGG
97419285 TTTAGGG
1 TTTAGGG
97419292 -TTAGTGG
1 TTTAG-GG
97419299 -TT-GGAG
1 TTTAGG-G
97419305 TTTAGGG
1 TTTAGGG
97419312 TTTA
1 TTTA
97419316 AGGTGTAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
5 1 0.02
6 6 0.14
7 34 0.79
8 2 0.05
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:97419328 original size:34 final size:34
Alignment explanation
Indices: 97419258--97419328 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
97419248 GTTTATGGTT
* * *
97419258 TTAGTGTTTAGGATTTAGGGTTTAGAGTTTAGGG
1 TTAGTGGTTAGGATTTAGGGTTTAGAGTGTAAGG
97419292 TTAGTGGTT-GGAGTTTAGGGTTTA-AGGTGTAAGG
1 TTAGTGGTTAGGA-TTTAGGGTTTAGA-GTGTAAGG
97419326 TTA
1 TTA
97419329 ATGATTCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 4 0.12
34 28 0.88
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (34 bp):
TTAGTGGTTAGGATTTAGGGTTTAGAGTGTAAGG
Found at i:97423673 original size:93 final size:93
Alignment explanation
Indices: 97423550--97423820 Score: 261
Period size: 93 Copynumber: 2.9 Consensus size: 93
97423540 ATATATTGAG
* *
97423550 GCCGATGCCATGTCCCAAGCAGGTTTTACACTGGCTCTCATCTATCG-GTGCCAATGCCATGTCC
1 GCCGATGCCATGTCCCAA-CAGGTCTTACACTGGCTCTCATATATCGAG-GCCAATG-CATGTCC
*
97423614 TAGATAGGTCTTACACT-GACAC-ATGTC-AA-
63 TAGACAGGTCTTACACTAG-CACTA-GTCTAAT
* * * *
97423643 GCCGATTCCATGTCCCAGACAGGTCTTACACTAGCT-TGCATATCTCGAGGCCGATGCATGTCCT
1 GCCGATGCCATGTCCCA-ACAGGTCTTACACTGGCTCT-CATATATCGAGGCCAATGCATGTCCT
* *
97423707 AGACATGTCTTACACTAGCTCTAGTCTTAAT
64 AGACAGGTCTTACACTAGCACTAGTC-TAAT
* * * * *
97423738 GCCGATGCCATGTCCCAAACATGGTCTTACACTGCCTCTCATA-AT-GTGGTCGATGCATGTCCC
1 GCCGATGCCATGTCCC-AACA-GGTCTTACACTGGCTCTCATATATCGAGGCCAATGCATGTCCT
*
97423801 AGACATGTCTTACACTAGCA
64 AGACAGGTCTTACACTAGCA
97423821 TACATCCATA
Statistics
Matches: 150, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
92 28 0.19
93 46 0.31
94 38 0.25
95 19 0.13
96 18 0.12
97 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAACAGGTCTTACACTGGCTCTCATATATCGAGGCCAATGCATGTCCTAG
ACAGGTCTTACACTAGCACTAGTCTAAT
Found at i:97423711 original size:48 final size:47
Alignment explanation
Indices: 97423503--97423816 Score: 218
Period size: 49 Copynumber: 6.6 Consensus size: 47
97423493 ACATCTAAGT
* * *
97423503 CGATGTCATGTCCCAGTCAGGTCTTACACTGACTTTCATATATTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTG-C-TTCATATATCGAGGC
* *
97423552 CGATGCCATGTCCCA-AGCAGGTTTTACACTGGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAGA-CAGGTCTTACACT-GCT-TCATATATCGAG-GC
* * * * * * *
97423601 CAATGCCATGTCCTAGATAGGTCTTACACTG--ACACATGTC-AAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGCTTCATATATCGAGGC
* *
97423645 CGATTCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACT-GCTT-CATATATCGAGGC
* * * ** *
97423694 CGATG-CATGTCCTAGACATGTCTTACACTAGC-TC-TAGTCTTAATGC
1 CGATGCCATGTCCCAGACAGGTCTTACACT-GCTTCATA-TATCGAGGC
* * *
97423740 CGATGCCATGTCCCAAACATGGTCTTACACTGCCTCTCATA-AT-GTGGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTG-CT-TCATATATCGAGGC
*
97423788 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
97423817 AGCATACATC
Statistics
Matches: 209, Mismatches: 38, Indels: 39
0.73 0.13 0.14
Matches are distributed among these distances:
44 28 0.13
45 8 0.04
46 22 0.11
47 25 0.12
48 51 0.24
49 69 0.33
50 4 0.02
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGCTTCATATATCGAGGC
Found at i:97426207 original size:24 final size:24
Alignment explanation
Indices: 97426180--97426277 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
97426170 AAGGCTGTCA
*
97426180 GGAGAATATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
97426204 GGAGACGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
97426228 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
97426252 GGAGAAGATTTAGAAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
97426277 G
1 G
97426278 AGCAAGAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.37, C:0.06, G:0.36, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:97427704 original size:27 final size:27
Alignment explanation
Indices: 97427664--97427741 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
97427654 AGGAAGCGTC
97427664 CTGGTGGCTA-TGCCACAATTATCTGA-T
1 CTGGTGGC-ACTGCCAC-ATTATCTGATT
*
97427691 CTGGTGGCACTGCCACGTATATCT-ATT
1 CTGGTGGCACTGCCACAT-TATCTGATT
*
97427718 CTGGTGGCTCTGCCACATTATCTG
1 CTGGTGGCACTGCCACATTATCTG
97427742 TTATGGCAGC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
26 8 0.18
27 36 0.82
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACATTATCTGATT
Found at i:97430638 original size:49 final size:49
Alignment explanation
Indices: 97430513--97430978 Score: 841
Period size: 49 Copynumber: 9.6 Consensus size: 49
97430503 CCCTTCGGGA
* * * * *
97430513 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97430560 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430607 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430656 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430705 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430754 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430803 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430852 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430901 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97430950 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
97430979 TATTCAAATA
Statistics
Matches: 406, Mismatches: 9, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 43 0.11
49 362 0.89
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97434538 original size:6 final size:6
Alignment explanation
Indices: 97434527--97434555 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
97434517 CATAGTAAAA
97434527 TATATT TATATT TATATT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATAT
97434556 AAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TATATT
Found at i:97434561 original size:18 final size:18
Alignment explanation
Indices: 97434527--97434561 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97434517 CATAGTAAAA
**
97434527 TATATTTATATTTATATT
1 TATATTTATATAAATATT
97434545 TATATTTATATAAATAT
1 TATATTTATATAAATAT
97434562 CATAATCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTTATATAAATATT
Found at i:97435126 original size:9 final size:9
Alignment explanation
Indices: 97435109--97435277 Score: 196
Period size: 9 Copynumber: 18.1 Consensus size: 9
97435099 AAAATCTAAC
*
97435109 CATAGCTTA
1 CATAACTTA
97435118 CATAACTTA
1 CATAACTTA
*
97435127 CATAGCTTA
1 CATAACTTA
97435136 CATAACTTA
1 CATAACTTA
*
97435145 TATAACATT-
1 CATAAC-TTA
97435154 CATAACTTA
1 CATAACTTA
*
97435163 CATAGCTTA
1 CATAACTTA
97435172 CATAACTTA
1 CATAACTTA
97435181 CATAACTTA
1 CATAACTTA
* *
97435190 TATAAGTTA
1 CATAACTTA
97435199 CATAACATTTA
1 CATAAC--TTA
97435210 CATAACTTA
1 CATAACTTA
*
97435219 CATAGCTTA
1 CATAACTTA
97435228 CATAACTTA
1 CATAACTTA
*
97435237 CATAAATATATA
1 CAT-AA-CT-TA
97435249 TCATAACTTA
1 -CATAACTTA
97435259 CATAACTTA
1 CATAACTTA
97435268 CATAACTTA
1 CATAACTTA
97435277 C
1 C
97435278 GTAATACATA
Statistics
Matches: 137, Mismatches: 15, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
8 2 0.01
9 111 0.81
10 6 0.04
11 11 0.08
12 4 0.03
13 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.03, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:97437526 original size:32 final size:32
Alignment explanation
Indices: 97437485--97437547 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
97437475 CCCAGATGTG
97437485 TATGCATCAAATTTATCTTGATATGTGAGTCA
1 TATGCATCAAATTTATCTTGATATGTGAGTCA
97437517 TATGCATCAAATTTATCTTGATATGTGAGTC
1 TATGCATCAAATTTATCTTGATATGTGAGTC
97437548 TTAAAGATCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (32 bp):
TATGCATCAAATTTATCTTGATATGTGAGTCA
Found at i:97447812 original size:38 final size:40
Alignment explanation
Indices: 97447745--97447849 Score: 114
Period size: 38 Copynumber: 2.7 Consensus size: 40
97447735 GTAATTAATT
97447745 AATTTTAAAAAATAAATTTT-TATATATTTTTAATAATTTCT-A
1 AATTTT-AAAAATAAATTTTATATAT-TTTTTAA-AATTT-TAA
*
97447787 AATTTTAAAAATAAATTTTA-A-ATTTTTTAAGATTTTAA
1 AATTTTAAAAATAAATTTTATATATTTTTTAAAATTTTAA
*
97447825 AATTTTAAAAATTAA-TTTAT-TATTT
1 AATTTTAAAAATAAATTTTATATATTT
97447850 GACATTTACA
Statistics
Matches: 57, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
37 5 0.09
38 23 0.40
39 7 0.12
40 2 0.04
41 14 0.25
42 6 0.11
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (40 bp):
AATTTTAAAAATAAATTTTATATATTTTTTAAAATTTTAA
Found at i:97449573 original size:13 final size:12
Alignment explanation
Indices: 97449534--97449574 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
97449524 ACCCACATTT
97449534 AATTAAAAAATA
1 AATTAAAAAATA
97449546 TAATTACAAAAATA
1 -AATTA-AAAAATA
97449560 AATTAAAACAATA
1 AATTAAAA-AATA
97449573 AA
1 AA
97449575 AAATTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.12
13 16 0.62
14 7 0.27
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (12 bp):
AATTAAAAAATA
Found at i:97454571 original size:6 final size:6
Alignment explanation
Indices: 97454562--97454589 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
97454552 TATTATTATT
97454562 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
97454590 ATTTATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTA
Found at i:97454601 original size:18 final size:17
Alignment explanation
Indices: 97454541--97454602 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
97454531 CTTTGAGTTC
*
97454541 ATTTATTTTATTATTATT
1 ATTTATTTTAAT-TTATT
97454559 A-TTATTTTAATTTTAATT
1 ATTTATTTTAA-TTT-ATT
*
97454577 -TTAATTTTAATTTATTT
1 ATTTATTTTAATTTA-TT
97454594 ATTTATTTT
1 ATTTATTTT
97454603 TGAAGACTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
16 1 0.03
17 15 0.42
18 20 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTATTTTAATTTATT
Found at i:97454728 original size:6 final size:6
Alignment explanation
Indices: 97454719--97454746 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
97454709 TATTATTATT
97454719 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
97454747 ATTTATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTA
Found at i:97454758 original size:18 final size:17
Alignment explanation
Indices: 97454698--97454759 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
97454688 CTTTGAGTTC
*
97454698 ATTTATTTTATTATTATT
1 ATTTATTTTAAT-TTATT
97454716 A-TTATTTTAATTTTAATT
1 ATTTATTTTAA-TTT-ATT
*
97454734 -TTAATTTTAATTTATTT
1 ATTTATTTTAATTTA-TT
97454751 ATTTATTTT
1 ATTTATTTT
97454760 TGAAGACTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
16 1 0.03
17 15 0.42
18 20 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTATTTTAATTTATT
Found at i:97454777 original size:157 final size:157
Alignment explanation
Indices: 97454491--97454805 Score: 603
Period size: 157 Copynumber: 2.0 Consensus size: 157
97454481 ACATCTCTCC
*
97454491 TTTGGCACCGTCGACCCACGAGGTATCCGATAATGAGGACCTTTGAGTTCATTTATTTTATTATT
1 TTTGGCACCGTCGACCCACGAGGTATCCGATAATGAGGAACTTTGAGTTCATTTATTTTATTATT
97454556 ATTATTATTTTAATTTTAATTTTAATTTTAATTTATTTATTTATTTTTGAAGACTTCTGTTTTAT
66 ATTATTATTTTAATTTTAATTTTAATTTTAATTTATTTATTTATTTTTGAAGACTTCTGTTTTAT
97454621 ATTTTGAATTATGTTTATCTTTATGGT
131 ATTTTGAATTATGTTTATCTTTATGGT
**
97454648 TTTGGCACCGTCTCCCCACGAGGTATCCGATAATGAGGAACTTTGAGTTCATTTATTTTATTATT
1 TTTGGCACCGTCGACCCACGAGGTATCCGATAATGAGGAACTTTGAGTTCATTTATTTTATTATT
97454713 ATTATTATTTTAATTTTAATTTTAATTTTAATTTATTTATTTATTTTTGAAGACTTCTGTTTTAT
66 ATTATTATTTTAATTTTAATTTTAATTTTAATTTATTTATTTATTTTTGAAGACTTCTGTTTTAT
97454778 ATTTTGAATTATGTTTATCTTTATGGT
131 ATTTTGAATTATGTTTATCTTTATGGT
97454805 T
1 T
97454806 GTTATCGAGT
Statistics
Matches: 155, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (157 bp):
TTTGGCACCGTCGACCCACGAGGTATCCGATAATGAGGAACTTTGAGTTCATTTATTTTATTATT
ATTATTATTTTAATTTTAATTTTAATTTTAATTTATTTATTTATTTTTGAAGACTTCTGTTTTAT
ATTTTGAATTATGTTTATCTTTATGGT
Found at i:97462268 original size:25 final size:25
Alignment explanation
Indices: 97462236--97462322 Score: 111
Period size: 25 Copynumber: 3.5 Consensus size: 25
97462226 TATTCTGATT
* *
97462236 ATGGCTTTGTGTCGATATGCTATTG
1 ATGGCTTTGTGCCGATATGTTATTG
* *
97462261 AAGGCTTTATGCCGATATGTTATTG
1 ATGGCTTTGTGCCGATATGTTATTG
* * *
97462286 ATCGTTTTGTGCCGGTATGTTATTG
1 ATGGCTTTGTGCCGATATGTTATTG
97462311 ATGGCTTTGTGC
1 ATGGCTTTGTGC
97462323 TGCCACTGAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.16, C:0.13, G:0.28, T:0.44
Consensus pattern (25 bp):
ATGGCTTTGTGCCGATATGTTATTG
Found at i:97462369 original size:20 final size:20
Alignment explanation
Indices: 97462306--97462436 Score: 145
Period size: 20 Copynumber: 6.5 Consensus size: 20
97462296 GCCGGTATGT
*
97462306 TATTGATGGCTTTGTGCTGC
1 TATTGATGGCTTTGTGCCGC
* * *
97462326 CACTGAAGGCTTTGTGCCGC
1 TATTGATGGCTTTGTGCCGC
*
97462346 TATTGATGGCTTTGTGCCGT
1 TATTGATGGCTTTGTGCCGC
* *
97462366 TATTAATGGCTTTGTGCCGA
1 TATTGATGGCTTTGTGCCGC
* * * *
97462386 TATTGACGGCTTTATACTGC
1 TATTGATGGCTTTGTGCCGC
*
97462406 TATTGATGGCTTCGTGCCGC
1 TATTGATGGCTTTGTGCCGC
*
97462426 TATTCATGGCT
1 TATTGATGGCT
97462437 GTGTACCATA
Statistics
Matches: 89, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 89 1.00
ACGTcount: A:0.15, C:0.20, G:0.27, T:0.39
Consensus pattern (20 bp):
TATTGATGGCTTTGTGCCGC
Found at i:97462476 original size:26 final size:26
Alignment explanation
Indices: 97462446--97462528 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
97462436 TGTGTACCAT
*
97462446 ATACTTATACTGGCAGCTTTGCTGCG
1 ATACTTATACTGGCAGCTATGCTGCG
* * * * *
97462472 TTACTGATACTGGCAACTCTGTTGCG
1 ATACTTATACTGGCAGCTATGCTGCG
97462498 ATA-TTATTACTGGCAGCTATGCTGCG
1 ATACTTA-TACTGGCAGCTATGCTGCG
97462524 ATACT
1 ATACT
97462529 GGTATGTTGG
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
25 2 0.04
26 42 0.93
27 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (26 bp):
ATACTTATACTGGCAGCTATGCTGCG
Found at i:97467394 original size:39 final size:40
Alignment explanation
Indices: 97467297--97467519 Score: 230
Period size: 39 Copynumber: 5.7 Consensus size: 40
97467287 TTGAATGCTG
*
97467297 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
97467335 ATCCGGACTAAGAT-CTGAAGGCAGTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
97467376 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97467415 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97467454 TCCGGGTTAAGTCCCGAAGGCATTTGTACGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
97467493 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
97467520 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 88 0.56
40 58 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:97467541 original size:79 final size:79
Alignment explanation
Indices: 97467370--97467552 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 79
97467360 TGTGCGAGAT
* * * *
97467370 ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGCCCGAAGG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACAAGATACTAATACCGGGCTAAGCCCGAAGG
** *
97467434 CATTTGTGCGAGTT
66 CATTTGAACGAGTG
* *
97467448 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAA-TTACT-ATAACCGGGCTATGTCCCGA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTAC-AAGATACTAAT-ACCGGGCTAAG-CCCGA
97467511 AGGCATTTGAACGAG-G
63 AGGCATTTGAACGAGTG
* * *
97467527 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
97467553 TACGTGATTT
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 17 0.19
79 44 0.50
80 27 0.31
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACAAGATACTAATACCGGGCTAAGCCCGAAGG
CATTTGAACGAGTG
Found at i:97474389 original size:39 final size:39
Alignment explanation
Indices: 97474335--97474457 Score: 174
Period size: 39 Copynumber: 3.2 Consensus size: 39
97474325 TTGATTTTTT
* *
97474335 TGATATATTTTTGAATGCTATGTGATTATATGAGTATTG
1 TGATATATTCTTGAATGTTATGTGATTATATGAGTATTG
*
97474374 TGATATATTCTTGAATGTTATGTGATTATATGAATATTG
1 TGATATATTCTTGAATGTTATGTGATTATATGAGTATTG
* * * * *
97474413 TGATATATGCTTAAATGTTATGTGATTTTATGTGTAATG
1 TGATATATTCTTGAATGTTATGTGATTATATGAGTATTG
97474452 TGATAT
1 TGATAT
97474458 GTAACAGTCT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (39 bp):
TGATATATTCTTGAATGTTATGTGATTATATGAGTATTG
Found at i:97477678 original size:27 final size:27
Alignment explanation
Indices: 97477647--97477824 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97477637 TAAATTGTAC
97477647 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97477674 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97477700 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97477728 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97477756 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97477783 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97477810 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97477825 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97477761 original size:82 final size:81
Alignment explanation
Indices: 97477648--97477803 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97477638 AAATTGTACA
* *
97477648 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97477712 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97477729 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97477794 TGCGAGTTGA
65 TGCGAATTGA
97477804 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97477815 original size:82 final size:81
Alignment explanation
Indices: 97477644--97477824 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
97477634 GATTAAATTG
* *
97477644 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97477709 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97477725 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97477789 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97477807 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97477825 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97485741 original size:27 final size:27
Alignment explanation
Indices: 97485710--97485887 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97485700 TAAATTGTAC
97485710 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97485737 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97485763 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97485791 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97485819 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97485846 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97485873 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97485888 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97485824 original size:82 final size:81
Alignment explanation
Indices: 97485711--97485866 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97485701 AAATTGTACA
* *
97485711 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97485775 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97485792 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97485857 TGCGAGTTGA
65 TGCGAATTGA
97485867 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97485878 original size:82 final size:81
Alignment explanation
Indices: 97485707--97485887 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
97485697 GATTAAATTG
* *
97485707 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97485772 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97485788 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97485852 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97485870 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97485888 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97488088 original size:15 final size:15
Alignment explanation
Indices: 97488069--97488103 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
97488059 AGCCGTGTGT
*
97488069 GACACACGACTTGGC
1 GACACACGACCTGGC
*
97488084 TACACACGACCTGGC
1 GACACACGACCTGGC
97488099 GACAC
1 GACAC
97488104 GACTGTGTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.37, G:0.23, T:0.11
Consensus pattern (15 bp):
GACACACGACCTGGC
Found at i:97497593 original size:5 final size:5
Alignment explanation
Indices: 97497557--97497584 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
97497547 GACTTCTTCT
97497557 AATAA AATAA AATAA AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
97497585 TACAATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:97500115 original size:31 final size:31
Alignment explanation
Indices: 97500072--97500135 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
97500062 CCTTTTCATA
97500072 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
97500103 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
97500134 TT
1 TT
97500136 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:97500378 original size:24 final size:24
Alignment explanation
Indices: 97500342--97500422 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
97500332 CTGGAGGCCT
*
97500342 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
97500367 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
97500391 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
97500414 AGCCCTTTT
1 AGCCCTTTT
97500423 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
23 23 0.43
24 27 0.50
25 4 0.07
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:97500403 original size:23 final size:23
Alignment explanation
Indices: 97500349--97500421 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
97500339 CCTAGCCTCT
*
97500349 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97500372 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97500396 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97500419 TTT
1 TTT
97500422 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:97500494 original size:9 final size:9
Alignment explanation
Indices: 97500480--97500536 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
97500470 ATTTCATGTG
97500480 CATATCATA
1 CATATCATA
*
97500489 CATATCATGTG
1 CATATCA--TA
97500500 CATATCATA
1 CATATCATA
* *
97500509 CATGTCATGTG
1 CATATCA--TA
97500520 CATATCATA
1 CATATCATA
97500529 CATATCAT
1 CATATCAT
97500537 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:97500496 original size:20 final size:20
Alignment explanation
Indices: 97500468--97500538 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
97500458 GCATTTATGA
*
97500468 ACATTTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
97500488 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
97500508 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
97500528 ACATATCATGT
1 ACATATCATGT
97500539 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:97500503 original size:11 final size:11
Alignment explanation
Indices: 97500473--97500527 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97500463 TATGAACATT
97500473 TCATGTGCATA
1 TCATGTGCATA
*
97500484 TCA--TACATA
1 TCATGTGCATA
97500493 TCATGTGCATA
1 TCATGTGCATA
* *
97500504 TCA--TACATG
1 TCATGTGCATA
97500513 TCATGTGCATA
1 TCATGTGCATA
97500524 TCAT
1 TCAT
97500528 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:97500614 original size:25 final size:24
Alignment explanation
Indices: 97500575--97500622 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
97500565 ATATATAAAC
* *
97500575 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
97500600 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
97500623 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:97501820 original size:27 final size:27
Alignment explanation
Indices: 97501783--97501855 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
97501773 TATTTGTTAT
* *
97501783 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCCTACAGGGGTATTACAGTCAC
*
97501810 TTTACCCTACAAGGGCT-TTACAGTCAC
1 TTTACCCTAC-AGGGGTATTACAGTCAC
*
97501837 TTTA-CCTAATAGGGGTATT
1 TTTACCCT-ACAGGGGTATT
97501856 TTAGTCATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.21
27 25 0.66
28 5 0.13
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
TTTACCCTACAGGGGTATTACAGTCAC
Found at i:97502009 original size:27 final size:27
Alignment explanation
Indices: 97501873--97502098 Score: 118
Period size: 27 Copynumber: 8.3 Consensus size: 27
97501863 TTTCATCCTA
* * * *
97501873 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * ** ** *
97501900 CAAAGGCATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
97501927 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* **
97501956 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
97501983 C-AGTTGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
** * * *
97502010 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
97502037 CAAGGGTATTTTGGTAATTTTA-AAAA
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
97502063 CTAGGGGTATTTTGGTAATTTTGTAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
97502091 CGAGGGTA
1 CAAGGGTA
97502099 AAATAGTAAT
Statistics
Matches: 151, Mismatches: 40, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
26 7 0.05
27 110 0.73
28 19 0.13
29 15 0.10
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:97502097 original size:54 final size:53
Alignment explanation
Indices: 97501958--97502098 Score: 142
Period size: 54 Copynumber: 2.6 Consensus size: 53
97501948 TAGAAAGTCA
* * * *
97501958 AGGGTATTTCT-GTAACTTTGTAAATCAGTTGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTT-TGGTAATTTTGTAAATCAG-GGTATTTTGGTAATTTTAAAAATAG
* *** *
97502012 AGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTAAAAACTAG
1 AGGGTATTTTGGTAATTTTGTAAATC-AGGGTATTTTGGTAATTTTAAAAA-TAG
97502067 -GGGTATTTTGGTAATTTTGTAAATCGAGGGTA
1 AGGGTATTTTGGTAATTTTGTAAATC-AGGGTA
97502099 AAATAGTAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
54 65 0.94
55 4 0.06
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTGTAAATCAGGGTATTTTGGTAATTTTAAAAATAG
Done.