Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 296 of 310
Found at i:97502395 original size:27 final size:28
Alignment explanation
Indices: 97502077--97502388 Score: 376
Period size: 27 Copynumber: 11.5 Consensus size: 28
97502067 GGGTATTTTG
* * *
97502077 GTAATTTTGTAAATCGAGGGTAAAA-TA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
97502104 GTAATTCTGTAAATCAAGGGTAAAAC-A
1 GTAATTCTGTAAATCAAGGGTAAAACGA
*
97502131 GTAATTCTATAAATCAAGGGTAAAACGA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
* * *
97502159 -TACTTCTGTAAATCGAGGGTAAAA-TA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
97502185 GTAATTCTGTAAATCAAGGGTAAAAC-A
1 GTAATTCTGTAAATCAAGGGTAAAACGA
*
97502212 GTAATTCTATAAATCAAGGGTAAAACGA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
* * *
97502240 -TACTTCTGTAAATCGAGGGTAAAA-TA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
97502266 GTAATTCTGTAAATCAAGGGTAAAAC-A
1 GTAATTCTGTAAATCAAGGGTAAAACGA
*
97502293 GTAATTCTATAAATCAAGGGTAAAACGA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
* * *
97502321 -TACTTCTGTAAATCGAGGGTAAAA-TA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
* * *
97502347 GTAATTCTGTAAGTCGAGGGTAAAGCGA
1 GTAATTCTGTAAATCAAGGGTAAAACGA
*
97502375 -TAATTATGTAAATC
1 GTAATTCTGTAAATC
97502389 GGGGGTACTT
Statistics
Matches: 248, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.01
27 241 0.97
28 4 0.02
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (28 bp):
GTAATTCTGTAAATCAAGGGTAAAACGA
Found at i:97502405 original size:54 final size:54
Alignment explanation
Indices: 97502090--97502422 Score: 287
Period size: 54 Copynumber: 6.2 Consensus size: 54
97502080 ATTTTGTAAA
* * * * *
97502090 TCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAA
1 TCGAGGGTAAAACGA-TAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAG
* * * * *
97502144 TCAAGGGTAAAACGATACTTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA
1 TCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAG
* * * * * * * *
97502198 TCAAGGGTAAAAC-AGTAATTCTATAAATCAAGGGTAAAA-CGATACTTCTGTAAA
1 TCGAGGGTAAAACGA-TAATTATGTAAATCGAGGGTAAAATAG-TAATTCTATAAG
* * * * *
97502252 TCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAA
1 TCGAGGGTAAAACGA-TAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAG
* * * *
97502306 TCAAGGGTAAAACGATACTTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAG
1 TCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAG
* * *** * * *
97502360 TCGAGGGTAAAGCGATAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAG
1 TCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAG
97502414 TCGAGGGTA
1 TCGAGGGTA
97502423 TTTCAATAAT
Statistics
Matches: 238, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.01
54 233 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (54 bp):
TCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAG
Found at i:97502422 original size:81 final size:81
Alignment explanation
Indices: 97502084--97502370 Score: 556
Period size: 81 Copynumber: 3.5 Consensus size: 81
97502074 TTGGTAATTT
97502084 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
1 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
97502149 GGTAAAACGATACTTC
66 GGTAAAACGATACTTC
97502165 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
1 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
97502230 GGTAAAACGATACTTC
66 GGTAAAACGATACTTC
97502246 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
1 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
97502311 GGTAAAACGATACTTC
66 GGTAAAACGATACTTC
* *
97502327 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAGTCGAGGGTAAA
1 TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAA
97502371 GCGATAATTA
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 204 1.00
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (81 bp):
TGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
GGTAAAACGATACTTC
Found at i:97503957 original size:20 final size:20
Alignment explanation
Indices: 97503932--97503970 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
97503922 ATCTAAAAAG
97503932 AAAAGATATATAATTTACTA
1 AAAAGATATATAATTTACTA
97503952 AAAAGATATATAATTTACT
1 AAAAGATATATAATTTACT
97503971 GTTGACGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAAGATATATAATTTACTA
Found at i:97511268 original size:40 final size:40
Alignment explanation
Indices: 97511086--97511308 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
97511076 TCCTCGTTCA
* * * * *
97511086 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
97511125 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
97511165 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
** * *
97511205 AATGCCTTCGGGACTTAACCCGGATTTCGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
97511245 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
97511285 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97511309 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:97511317 original size:41 final size:41
Alignment explanation
Indices: 97511240--97511317 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
97511230 TTCGTATCTC
* * *
97511240 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
97511281 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
97511318 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:97519032 original size:39 final size:40
Alignment explanation
Indices: 97518987--97519171 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
97518977 GCTCCTCGTT
* * *
97518987 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
97519027 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
97519066 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
97519106 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
97519147 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
97519172 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:97519087 original size:40 final size:39
Alignment explanation
Indices: 97518954--97519171 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
97518944 AAATCACGTA
* * **
97518954 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
97518993 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
97519032 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
97519072 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
97519112 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
97519152 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
97519172 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:97527021 original size:42 final size:42
Alignment explanation
Indices: 97526975--97527057 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
97526965 GCTTGTATGC
* * *
97526975 CTCACACGGCTTGGACACATGCCAATGTCTTTGCCCATGTGT
1 CTCACACAGCTTGGACACACGCCAATGTCCTTGCCCATGTGT
* * * *
97527017 CTCACATAGCTTGGGCACACGCCCATGTCCTTGGCCATGTG
1 CTCACACAGCTTGGACACACGCCAATGTCCTTGCCCATGTG
97527058 GTCCTAAATA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.18, C:0.33, G:0.23, T:0.27
Consensus pattern (42 bp):
CTCACACAGCTTGGACACACGCCAATGTCCTTGCCCATGTGT
Found at i:97529544 original size:14 final size:15
Alignment explanation
Indices: 97529517--97529553 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
97529507 TTAGGCGTAT
97529517 GTGACACACGGCCTG
1 GTGACACACGGCCTG
97529532 GTGACAC-CGGCCTG
1 GTGACACACGGCCTG
97529546 GTGACACA
1 GTGACACA
97529554 GTTGTGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.22, C:0.32, G:0.32, T:0.14
Consensus pattern (15 bp):
GTGACACACGGCCTG
Found at i:97529610 original size:62 final size:63
Alignment explanation
Indices: 97529539--97529670 Score: 185
Period size: 63 Copynumber: 2.1 Consensus size: 63
97529529 CTGGTGACAC
* * * * * *
97529539 CGGCCTGGTGACACAGTTGTGTGTTCCCTGTA-GTTCCATTGTATACAAGTTAGGTAGTTAGA
1 CGGCCTGGTGACACAGCTATGTGTCCCCTATAGGTTCCATTGCATACAAGTTAGGTAGTTACA
* *
97529601 CGGCCTGGTGACACAGCTATGTGTCCCCTATAGGTTCCGTTGCATACTAGTTAGGTAGTTACA
1 CGGCCTGGTGACACAGCTATGTGTCCCCTATAGGTTCCATTGCATACAAGTTAGGTAGTTACA
97529664 CGGCCTG
1 CGGCCTG
97529671 CCACACGGGC
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
62 28 0.46
63 33 0.54
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (63 bp):
CGGCCTGGTGACACAGCTATGTGTCCCCTATAGGTTCCATTGCATACAAGTTAGGTAGTTACA
Found at i:97536147 original size:142 final size:142
Alignment explanation
Indices: 97535891--97536157 Score: 358
Period size: 142 Copynumber: 1.9 Consensus size: 142
97535881 GCGTGCTAAA
* * * * * *
97535891 GTAAGACCTGTTTGGGACATGGCATCGGCACCGATAGATGAGAGCCAATGTAAGACCTTTCTGGG
1 GTAAGACCTGTCTAGGACATGGCATCGACACAGATAAATGAGAGCCAATATAAGACCTTTCTGGG
* * *
97535956 ACACGGCATCAGCCTCAAGATATGCAAGCTAGTGTAAAACCTTTCTGGGACATGGCATCGGCTTG
66 ACACGGCATCAGCCTCAACATATGCAAGCTAGTATAAAACCTATCTGGGACATGGCATCGGCTTG
97536021 AGGTGTGTTAGT
131 AGGTGTGTTAGT
* * *
97536033 GTAAGACCTGTCTAGGATATGGCATCGATACAGATAAATGAGAGCCAGTATAAGA-CTTGTCTGG
1 GTAAGACCTGTCTAGGACATGGCATCGACACAGATAAATGAGAGCCAATATAAGACCTT-TCTGG
* * * *
97536097 GACATGGCATC-GACCTCAACTTATGCAAGTTAGTATAAGACCTATCTGGGACATGGCATCG
65 GACACGGCATCAG-CCTCAACATATGCAAGCTAGTATAAAACCTATCTGGGACATGGCATCG
97536158 ACTTAGATAT
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
141 4 0.04
142 103 0.96
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (142 bp):
GTAAGACCTGTCTAGGACATGGCATCGACACAGATAAATGAGAGCCAATATAAGACCTTTCTGGG
ACACGGCATCAGCCTCAACATATGCAAGCTAGTATAAAACCTATCTGGGACATGGCATCGGCTTG
AGGTGTGTTAGT
Found at i:97543808 original size:49 final size:48
Alignment explanation
Indices: 97543611--97543880 Score: 193
Period size: 49 Copynumber: 5.6 Consensus size: 48
97543601 GATGTGTGTA
* * *
97543611 CTAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCAAGATATGCAAG
1 CTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTC-AGATATGCAAG
* * * * ** *
97543660 CTAGTGTAAGACCTGTCTGAGACATGGCAACG-GCT-TGAGGT-C-TG
1 CTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAGATATGCAAG
* * * *
97543704 TTAGTGTAAGACCTGTCTAGGACATGGCATTGA-CACAGATAAGTG-AGAG
1 CTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAGAT-A-TGCA-AG
*
97543753 CTAGTGTAAGACCTGTCTGGGACATGGCATTGACCTC-GACGTATGCAAG
1 CTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAGA--TATGCAAG
* * *
97543802 -TCAGTGTAAGACCTGTTTGGGACATGGCATCGA-CTTAGATGTG-AGAG
1 CT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAGATATGCA-AG
* *
97543849 CCAGTGTAAGACCATGT-TTGGAGCATGGCATC
1 CTAGTGTAAGACC-TGTCTGGGA-CATGGCATC
97543881 AGAATTGCAC
Statistics
Matches: 176, Mismatches: 28, Indels: 35
0.74 0.12 0.15
Matches are distributed among these distances:
44 29 0.16
45 3 0.02
46 4 0.02
47 21 0.12
48 17 0.10
49 97 0.55
50 4 0.02
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
CTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAGATATGCAAG
Found at i:97546009 original size:27 final size:27
Alignment explanation
Indices: 97545968--97546140 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
97545958 TGGTTAAGTT
97545968 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
97545995 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
97546022 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
97546049 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
97546076 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
97546103 GTAGAATTACCGAGATACCTTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
97546130 GTAAAATTACC
1 GTAGAATTACC
97546141 ATTTTGGCCC
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:97549139 original size:22 final size:23
Alignment explanation
Indices: 97549084--97549163 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 23
97549074 TGAGCTGATG
**
97549084 AACAGTAAGCTCTATTGAGATAA
1 AACAGTAAGCTCTATCAAGATAA
* * *
97549107 AACGGTAAGCTCTATCAAGCT-T
1 AACAGTAAGCTCTATCAAGATAA
*
97549129 AACAGTAAGCTC-ATACGAA-CTAA
1 AACAGTAAGCTCTAT-C-AAGATAA
97549152 AACAGTAAGCTC
1 AACAGTAAGCTC
97549164 CAATGAGTTG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.04
22 14 0.30
23 31 0.66
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTATCAAGATAA
Found at i:97551557 original size:9 final size:9
Alignment explanation
Indices: 97551543--97551640 Score: 62
Period size: 9 Copynumber: 12.3 Consensus size: 9
97551533 GCAAAAGATT
97551543 TTAAAATTA
1 TTAAAATTA
97551552 TTAAAATTA
1 TTAAAATTA
97551561 TTAAAATTA
1 TTAAAATTA
97551570 TT----TT-
1 TTAAAATTA
97551574 TTAAAA-TA
1 TTAAAATTA
97551582 -TAAAATTAA
1 TTAAAATT-A
*
97551591 TTTAAATTA
1 TTAAAATTA
97551600 TT-AAATTA
1 TTAAAATTA
*
97551608 TT----TTT
1 TTAAAATTA
*
97551613 TTGAAA-TA
1 TTAAAATTA
97551621 -TAAAATTA
1 TTAAAATTA
97551629 TTAAAATTA
1 TTAAAATTA
97551638 TTA
1 TTA
97551641 TATTAAAATA
Statistics
Matches: 71, Mismatches: 4, Indels: 28
0.69 0.04 0.27
Matches are distributed among these distances:
4 2 0.03
5 6 0.08
7 10 0.14
8 12 0.17
9 35 0.49
10 6 0.08
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (9 bp):
TTAAAATTA
Found at i:97551600 original size:30 final size:31
Alignment explanation
Indices: 97551541--97551601 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
97551531 GAGCAAAAGA
97551541 TTTTAAAATTATTAAAATTATTAAAATTATT
1 TTTTAAAATTATTAAAATTATTAAAATTATT
*
97551572 TTTTAAAA-TA-TAAAATTAATTTAAATTATT
1 TTTTAAAATTATTAAAATT-ATTAAAATTATT
97551602 AAATTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 7 0.25
30 13 0.46
31 8 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (31 bp):
TTTTAAAATTATTAAAATTATTAAAATTATT
Found at i:97551601 original size:39 final size:39
Alignment explanation
Indices: 97551544--97551640 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
97551534 CAAAAGATTT
97551544 TAAAATTATTAAAATTATTAAAATTA-TTTTTTAAAATA
1 TAAAATTATTAAAATTATTAAAATTATTTTTTTAAAATA
* *
97551582 TAAAATTAATTTAAATTATT-AAATTATTTTTTTGAAATA
1 TAAAATT-ATTAAAATTATTAAAATTATTTTTTTAAAATA
97551621 TAAAATTATTAAAATTATTA
1 TAAAATTATTAAAATTATTA
97551641 TATTAAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
38 24 0.45
39 29 0.55
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (39 bp):
TAAAATTATTAAAATTATTAAAATTATTTTTTTAAAATA
Found at i:97551606 original size:38 final size:38
Alignment explanation
Indices: 97551544--97551645 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 38
97551534 CAAAAGATTT
97551544 TAAAATTATTAAAATTATTAAAATTA-TTTTTTAAAATA
1 TAAAATTATTAAAATTATT-AAATTATTTTTTTAAAATA
* *
97551582 TAAAATTAATTTAAATTATTAAATTATTTTTTTGAAATA
1 TAAAATT-ATTAAAATTATTAAATTATTTTTTTAAAATA
*
97551621 TAAAATTATTAAAATTATTATATTA
1 TAAAATTATTAAAATTATTAAATTA
97551646 AAATATTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
38 29 0.50
39 29 0.50
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (38 bp):
TAAAATTATTAAAATTATTAAATTATTTTTTTAAAATA
Found at i:97551627 original size:21 final size:19
Alignment explanation
Indices: 97551562--97551630 Score: 70
Period size: 18 Copynumber: 3.5 Consensus size: 19
97551552 TTAAAATTAT
97551562 TAAAATTATTTTTTAAAATA
1 TAAAATTATTTTTT-AAATA
*
97551582 TAAAATTA--ATTTAAATTA
1 TAAAATTATTTTTTAAA-TA
*
97551600 TTAAATTATTTTTTTGAAATA
1 TAAAATTA-TTTTTT-AAATA
97551621 TAAAATTATT
1 TAAAATTATT
97551631 AAAATTATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.08
18 12 0.30
20 10 0.25
21 12 0.30
22 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (19 bp):
TAAAATTATTTTTTAAATA
Found at i:97551650 original size:30 final size:29
Alignment explanation
Indices: 97551594--97551651 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
97551584 AAATTAATTT
* * *
97551594 AAATTATTAAATTATTTTTTTGAAATATA
1 AAATTATTAAATTATTATATTAAAATATA
97551623 AAATTATTAAAATTATTATATTAAAATAT
1 AAATTATT-AAATTATTATATTAAAATAT
97551652 TTTTTTAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
AAATTATTAAATTATTATATTAAAATATA
Found at i:97553752 original size:26 final size:26
Alignment explanation
Indices: 97553723--97553778 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
97553713 TGGTGCAAAT
97553723 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97553749 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97553775 TGAT
1 TGAT
97553779 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97558480 original size:18 final size:19
Alignment explanation
Indices: 97558457--97558492 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97558447 TAAACTTGGC
*
97558457 AACATAA-TCATTTAATTT
1 AACATAATTCAATTAATTT
97558475 AACATAATTCAATTAATT
1 AACATAATTCAATTAATT
97558493 CACTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (19 bp):
AACATAATTCAATTAATTT
Found at i:97558824 original size:30 final size:30
Alignment explanation
Indices: 97558790--97558850 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97558780 TCCTTAACTC
97558790 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
97558820 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
97558850 A
1 A
97558851 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:97562250 original size:26 final size:26
Alignment explanation
Indices: 97562221--97562328 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
97562211 TGGTACAAAT
*
97562221 TGATAATGGGTTCGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
97562247 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97562273 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97562299 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97562325 TGAT
1 TGAT
97562329 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97574922 original size:22 final size:21
Alignment explanation
Indices: 97574897--97574956 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 21
97574887 TTTGAGTATT
97574897 GTGATTTATGCTTGAATGTTA
1 GTGATTTATGCTTGAATGTTA
* *
97574918 CGTGA-TTAT--ATGAGTGTT-
1 -GTGATTTATGCTTGAATGTTA
*
97574936 GTGATATATGCTTGAATGTTA
1 GTGATTTATGCTTGAATGTTA
97574957 TGTAATTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 9
0.67 0.12 0.21
Matches are distributed among these distances:
17 4 0.14
18 3 0.10
19 7 0.24
20 7 0.24
21 4 0.14
22 4 0.14
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (21 bp):
GTGATTTATGCTTGAATGTTA
Found at i:97574946 original size:39 final size:39
Alignment explanation
Indices: 97574889--97575026 Score: 213
Period size: 39 Copynumber: 3.5 Consensus size: 39
97574879 AACATATTTT
* *
97574889 TGAGTATTGTGATTTATGCTTGAATGTTACGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
97574928 TGAGTGTTGTGATATATGCTTGAATGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
97574967 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
97575006 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
97575027 AAAAGTGAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:97576641 original size:39 final size:39
Alignment explanation
Indices: 97576587--97576664 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
97576577 AATGTTTTTA
* * *
97576587 AGTATTGTGATATATGCTTG-AATGTTATGTGGTTATATG
1 AGTATCGTCATATATGC-TGAAATGTTATGTGATTATATG
97576626 AGTATCGTCATATATGCTGAAATGTTATGTGATTATATG
1 AGTATCGTCATATATGCTGAAATGTTATGTGATTATATG
97576665 TGTAATGTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 2 0.06
39 33 0.94
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (39 bp):
AGTATCGTCATATATGCTGAAATGTTATGTGATTATATG
Found at i:97580369 original size:42 final size:42
Alignment explanation
Indices: 97580301--97580418 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
97580291 TGTAATCTCG
* *
97580301 TATCGATGCCAATAGCCCATCA-ATGGTCTTACA-AGAAGTCCCA
1 TATCGATGCC-ATATCCCA-AATATGGTCTTACACA-AAGTCCCA
**
97580344 TATCGATGCCATATCCCAAATATGGTCTTACACAAAGTCTTA
1 TATCGATGCCATATCCCAAATATGGTCTTACACAAAGTCCCA
*
97580386 TA-CTGATGCCATATCCCAGATATGGTCTTACAC
1 TATC-GATGCCATATCCCAAATATGGTCTTACAC
97580419 GTAGTCTTAG
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
41 2 0.03
42 54 0.81
43 11 0.16
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (42 bp):
TATCGATGCCATATCCCAAATATGGTCTTACACAAAGTCCCA
Found at i:97589746 original size:29 final size:27
Alignment explanation
Indices: 97589711--97589775 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 27
97589701 ATCTTTATTG
97589711 AATATAAAATACTATAAAAACTACTAAA
1 AATATAAAATACTATAAAAACT-CTAAA
* *
97589739 AATCATAATTATACTATATAAACTCTAAA
1 AAT-ATAA-AATACTATAAAAACTCTAAA
97589768 AATATAAA
1 AATATAAA
97589776 TTATTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 7 0.22
29 12 0.38
30 13 0.41
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (27 bp):
AATATAAAATACTATAAAAACTCTAAA
Found at i:97589777 original size:29 final size:30
Alignment explanation
Indices: 97589711--97589779 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
97589701 ATCTTTATTG
97589711 AATATAAA--ATACTATAAAAACTACTAAA
1 AATATAAATTATACTATAAAAACTACTAAA
*
97589739 AATCAT-AATTATACTATATAAACT-CTAAA
1 AAT-ATAAATTATACTATAAAAACTACTAAA
97589768 AATATAAATTAT
1 AATATAAATTAT
97589780 TATTAAATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
28 7 0.19
29 16 0.44
30 13 0.36
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (30 bp):
AATATAAATTATACTATAAAAACTACTAAA
Found at i:97591953 original size:43 final size:43
Alignment explanation
Indices: 97591820--97591954 Score: 225
Period size: 43 Copynumber: 3.1 Consensus size: 43
97591810 CCGGCATTAC
* *
97591820 GCCTGTTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
97591863 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
97591906 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
97591949 GCCTGC
1 GCCTGC
97591955 GGGATTTAAC
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:97607336 original size:15 final size:15
Alignment explanation
Indices: 97607316--97607344 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97607306 CTAAACAAAC
97607316 AAAATAATAATAATA
1 AAAATAATAATAATA
97607331 AAAATAATAATAAT
1 AAAATAATAATAAT
97607345 GATAACATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAATAATAATA
Found at i:97609154 original size:20 final size:18
Alignment explanation
Indices: 97609111--97609160 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
97609101 GTTCGTATGA
* *
97609111 TTATATATTGTTTTAATG
1 TTATATATTGATCTAATG
97609129 TTATATATTGATCTATATG
1 TTATATATTGATCTA-ATG
*
97609148 TTAATATGTTGAT
1 TT-ATATATTGAT
97609161 TGCTATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 13 0.48
19 5 0.19
20 9 0.33
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (18 bp):
TTATATATTGATCTAATG
Found at i:97611354 original size:13 final size:13
Alignment explanation
Indices: 97611336--97611361 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97611326 TATAGGGGAC
97611336 ACATGGCCATGTG
1 ACATGGCCATGTG
97611349 ACATGGCCATGTG
1 ACATGGCCATGTG
97611362 TCACACAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGGCCATGTG
Found at i:97611521 original size:20 final size:22
Alignment explanation
Indices: 97611484--97611524 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
97611474 CCCTTAACCA
97611484 AAGCATATAAACATACCAATTG
1 AAGCATATAAACATACCAATTG
97611506 AAGCATA-AAACA-ACCAATT
1 AAGCATATAAACATACCAATT
97611525 CAATGAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 5 0.26
22 7 0.37
ACGTcount: A:0.54, C:0.20, G:0.07, T:0.20
Consensus pattern (22 bp):
AAGCATATAAACATACCAATTG
Found at i:97612199 original size:13 final size:13
Alignment explanation
Indices: 97612183--97612208 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97612173 ATTTTTCTCT
97612183 TATAAGCATTTCA
1 TATAAGCATTTCA
97612196 TATAAGCATTTCA
1 TATAAGCATTTCA
97612209 CTCAAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
TATAAGCATTTCA
Found at i:97614890 original size:41 final size:37
Alignment explanation
Indices: 97614830--97614907 Score: 75
Period size: 41 Copynumber: 2.0 Consensus size: 37
97614820 GCACATCTAA
* *
97614830 GTATTTCACTCTTTACCACTCCGAATTAATTTCATCC
1 GTATTTCACTCTTTACCACTCCCAATGAATTTCATCC
* * *
97614867 NNNNGTATTTCCCTCTTTCCCACTCCCAATGATTTTCATCC
1 ----GTATTTCACTCTTTACCACTCCCAATGAATTTCATCC
97614908 AATCCATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.19, C:0.32, G:0.05, T:0.38
Consensus pattern (37 bp):
GTATTTCACTCTTTACCACTCCCAATGAATTTCATCC
Found at i:97619194 original size:42 final size:41
Alignment explanation
Indices: 97619137--97619349 Score: 257
Period size: 42 Copynumber: 5.1 Consensus size: 41
97619127 AAGAGCACAA
97619137 TCACTTAAGCTCACATAGGGAGCTTCG-TCGATACATAGCTTG
1 TCACTTAAGCTCACAT-GGGAGCTTCGCT-GATACATAGCTTG
* * * *
97619179 TCACCTAAGGTCACATGGGGAGCTTCGCTGATACACAACTTG
1 TCACTTAAGCTCACAT-GGGAGCTTCGCTGATACATAGCTTG
* * *
97619221 TCACTTAAGCTCACGAGGGGAGCTTCACTGATACATAGCTTA
1 TCACTTAAGCTCAC-ATGGGAGCTTCGCTGATACATAGCTTG
* ** * *
97619263 TCACTTAAGCTCACATGGAGAGCTTTGCTGATACGCAACTTA
1 TCACTTAAGCTCACATGG-GAGCTTCGCTGATACATAGCTTG
97619305 TCACTTAAGCTCACATGGAGAGCTTCGCTGATACATAGCTTG
1 TCACTTAAGCTCACATGG-GAGCTTCGCTGATACATAGCTTG
97619347 TCA
1 TCA
97619350 AATCATTTCT
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
41 3 0.02
42 140 0.97
43 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (41 bp):
TCACTTAAGCTCACATGGGAGCTTCGCTGATACATAGCTTG
Found at i:97619230 original size:84 final size:83
Alignment explanation
Indices: 97619136--97619349 Score: 304
Period size: 84 Copynumber: 2.5 Consensus size: 83
97619126 GAAGAGCACA
* *
97619136 ATCACTTAAGCTCACATAGGGAGCTTCG-TCGATACATAGCTTGTCACCTAAGGTCACATGGGGA
1 ATCACTTAAGCTCACAT-GGGAGCTTCGCT-GATACATAGCTTGTCACCTAAGCTCACATGGAGA
97619200 GCTTCGCTGATACACAACTT
64 GCTTCGCTGATACACAACTT
* * * * *
97619220 GTCACTTAAGCTCACGAGGGGAGCTTCACTGATACATAGCTTATCACTTAAGCTCACATGGAGAG
1 ATCACTTAAGCTCAC-ATGGGAGCTTCGCTGATACATAGCTTGTCACCTAAGCTCACATGGAGAG
* *
97619285 CTTTGCTGATACGCAACTT
65 CTTCGCTGATACACAACTT
97619304 ATCACTTAAGCTCACATGGAGAGCTTCGCTGATACATAGCTTGTCA
1 ATCACTTAAGCTCACATGG-GAGCTTCGCTGATACATAGCTTGTCA
97619350 AATCATTTCT
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
83 3 0.03
84 109 0.96
85 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (83 bp):
ATCACTTAAGCTCACATGGGAGCTTCGCTGATACATAGCTTGTCACCTAAGCTCACATGGAGAGC
TTCGCTGATACACAACTT
Found at i:97626632 original size:46 final size:46
Alignment explanation
Indices: 97626581--97626843 Score: 295
Period size: 46 Copynumber: 5.7 Consensus size: 46
97626571 GATGGTTGAG
*
97626581 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAA
* * *
97626627 TATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAA--A
*
97626672 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAA
* * *
97626720 TATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAA--A
*
97626765 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAA
** * *
97626813 CGCCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC
97626844 GCTTATGGGC
Statistics
Matches: 183, Mismatches: 20, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
43 12 0.07
45 6 0.03
46 87 0.48
47 60 0.33
48 7 0.04
50 11 0.06
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAA
Found at i:97626739 original size:93 final size:93
Alignment explanation
Indices: 97626580--97626844 Score: 467
Period size: 93 Copynumber: 2.8 Consensus size: 93
97626570 GGATGGTTGA
97626580 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
97626645 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
97626673 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
97626738 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *** * *
97626766 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
97626831 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
97626845 CTTATGGGCG
Statistics
Matches: 165, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 165 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97630132 original size:68 final size:67
Alignment explanation
Indices: 97629966--97630141 Score: 159
Period size: 68 Copynumber: 2.6 Consensus size: 67
97629956 TAGTACCACT
* * *
97629966 CATGCGACCTAGC--CA-ATTTGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTCATTCAC-T-GAAT
97630028 CACA
64 CACA
* * *
97630032 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATTC-C-GT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-T-CATTCACTGA
97630094 ATCACA
62 ATCACA
*
97630100 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
97630142 AAACATGATG
Statistics
Matches: 92, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
66 13 0.14
67 1 0.01
68 36 0.39
69 9 0.10
70 5 0.05
71 24 0.26
72 4 0.04
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (67 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTCATTCACTGAATCA
CA
Found at i:97634900 original size:75 final size:75
Alignment explanation
Indices: 97634811--97634960 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
97634801 GTAAAATTAG
** * *
97634811 TGAATTTTGGAAAATCCTTAGTTGGGGGAAGCTAAGGTAGTGGAGTAGGCAATTGGGACTGAGGC
1 TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGTAATGGAGTAGGCAATTGGGACTGAGCC
97634876 AATCTAAATT
66 AATCTAAATT
97634886 TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGTAATGGAGTAGGCAATTGGGACTGAGCC
1 TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGTAATGGAGTAGGCAATTGGGACTGAGCC
*
97634951 ACTCTAAATT
66 AATCTAAATT
97634961 CTTGTGTTCC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.28
Consensus pattern (75 bp):
TGAATTTTGGAAAATCCTTAGTTGGGCAAAGCTAAGGTAATGGAGTAGGCAATTGGGACTGAGCC
AATCTAAATT
Found at i:97641188 original size:136 final size:138
Alignment explanation
Indices: 97640937--97641199 Score: 386
Period size: 136 Copynumber: 1.9 Consensus size: 138
97640927 AGAGAACATA
* * * *
97640937 AATAAAATTAATATATGAATTCCTTTCATACAAAATATTATTTGTATATATTTTACCAGATTTAT
1 AATAAAATTAATATATGAATTCCATTAATACAAAATATTATATGTATATATTTTACCAAATTTAT
* * * * *
97641002 TAATATTAATAGTTATATTAATTAATGTCGGTAAAAATATAAATGACATGGAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAATGTCGGTAAAAATATAAAAGACATGGAAAATAATATTCTT
97641067 TTGTAAAG
131 TTGTAAAG
* **
97641075 AATATAATTAATATATGAATTTGATTAATACAAAATATTA-AT-TATATATTTTACCAAATTTAT
1 AATAAAATTAATATATGAATTCCATTAATACAAAATATTATATGTATATATTTTACCAAATTTAT
* *
97641138 TAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAATAATATT
66 TAATATAAACAATTATATTAATTAATGTCGGTAAAAATATAAAAGACATGGAAAATAATATT
97641200 AATTTTATAT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
136 75 0.68
137 1 0.01
138 35 0.32
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (138 bp):
AATAAAATTAATATATGAATTCCATTAATACAAAATATTATATGTATATATTTTACCAAATTTAT
TAATATAAACAATTATATTAATTAATGTCGGTAAAAATATAAAAGACATGGAAAATAATATTCTT
TTGTAAAG
Found at i:97641223 original size:88 final size:86
Alignment explanation
Indices: 97641108--97641287 Score: 261
Period size: 88 Copynumber: 2.1 Consensus size: 86
97641098 ATTAATACAA
*
97641108 AATATTAATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAA
1 AATATTAATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAA
*
97641173 AATATAAAAGACATGGAAAAT
66 AATATAAAAGACATAGAAAAT
* * * * *
97641194 AATATTAATTTTATATATTTTATCGAATTTATTAATATAAACAGTTATATTAATTAGTTTTAGTC
1 AATATTAA--TTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTC
* *
97641259 AAAATATACAAGACATAGAAATT
64 AAAATATAAAAGACATAGAAAAT
97641282 AATATT
1 AATATT
97641288 CTTTTGGAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 8 0.10
88 75 0.90
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (86 bp):
AATATTAATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAA
AATATAAAAGACATAGAAAAT
Found at i:97641726 original size:9 final size:9
Alignment explanation
Indices: 97641714--97641749 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
97641704 AAAACAGAGG
97641714 AAACAAAGT
1 AAACAAAGT
97641723 AAACAAAGT
1 AAACAAAGT
*
97641732 AAACGAAGT
1 AAACAAAGT
97641741 AAACAAAGT
1 AAACAAAGT
97641750 TTTAAGCAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.64, C:0.11, G:0.14, T:0.11
Consensus pattern (9 bp):
AAACAAAGT
Found at i:97642208 original size:37 final size:37
Alignment explanation
Indices: 97642158--97642265 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
97642148 ACCTTTAGCT
* * *
97642158 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
97642195 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
97642232 CGGACATACTCTCCACACGTAGTCATTGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
97642266 TAGAGCTCGG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:97642462 original size:47 final size:47
Alignment explanation
Indices: 97642384--97642917 Score: 942
Period size: 47 Copynumber: 11.3 Consensus size: 47
97642374 CCCTTCGGGA
* * ** * * *
97642384 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97642431 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642478 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642525 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642572 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642619 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642760 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642807 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
97642854 CTTATCACATATATATACACTTTCACATTAATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97642903 CTTATCACATATATA
1 CTTATCACATATATA
97642918 TATCCACATA
Statistics
Matches: 471, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 427 0.91
49 44 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97642994 original size:48 final size:48
Alignment explanation
Indices: 97642921--97643126 Score: 277
Period size: 48 Copynumber: 4.3 Consensus size: 48
97642911 ATATATATAT
* * * * *
97642921 CCACATATACATATCTCATACATATTTCACATTCGCCATTTGGCTTTA
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCA
* * * *
97642969 CCACATATACATATAACACATATATTTCACATTAGCCATTCGACTTTA
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCA
* * *
97643017 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCA
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCA
*
97643065 CCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTCA
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCA
* *
97643113 CCACACATATATAT
1 CCACATATACATAT
97643127 ATTTATCTTG
Statistics
Matches: 138, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 138 1.00
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (48 bp):
CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCA
Found at i:97643085 original size:96 final size:96
Alignment explanation
Indices: 97642921--97643126 Score: 349
Period size: 96 Copynumber: 2.1 Consensus size: 96
97642911 ATATATATAT
* *
97642921 CCACATATACATATCTCATACATATTTCACATTCGCCATTTGGCTTTACCACATATACATATAAC
1 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATAAC
*
97642986 ACATATATTTCACATTAGCCATTCGACTTTA
66 ACATATATTTCACATTAGCCATTCGACTTCA
*
97643017 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCAC
1 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATAAC
*
97643082 ACATATATTTCACATTAGCCATTCGGCTTCA
66 ACATATATTTCACATTAGCCATTCGACTTCA
* *
97643113 CCACACATATATAT
1 CCACATATACATAT
97643127 ATTTATCTTG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 103 1.00
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (96 bp):
CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATAAC
ACATATATTTCACATTAGCCATTCGACTTCA
Found at i:97648825 original size:39 final size:39
Alignment explanation
Indices: 97648789--97649039 Score: 268
Period size: 39 Copynumber: 6.4 Consensus size: 39
97648779 TTATCAGGAT
* * * **
97648789 TACCAAAGTACAATAAGGGCATGTAAGTGTGTTCAGGGG
1 TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
* *
97648828 TACCGAAGTACAACAGGGGCACATAAGTGCATTCAGGGG
1 TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
* *
97648867 TACCGAAGTACAATAGGGGCACGTAAGTGCATTCAGGGG
1 TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
* * *
97648906 TACCAAAATACAACACGGGCATGTAAGTGCATTCAGGGG
1 TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
* * * **
97648945 TACCGAAGCACAACTGGGGCACGTAAGTTTATTCAGGGG
1 TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
* * * * * *
97648984 TATCGAAGTATAATAAGGGCACGTATGTGCATTCAGGGG
1 TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
* * *
97649023 TATCGAAGTGCAACAGG
1 TACCAAAGTACAACAGG
97649040 TTTCTACTAA
Statistics
Matches: 177, Mismatches: 35, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 177 1.00
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (39 bp):
TACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGG
Found at i:97648844 original size:19 final size:19
Alignment explanation
Indices: 97648822--97648885 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
97648812 TAAGTGTGTT
97648822 CAGGGGTACCGAAGTACAA
1 CAGGGGTACCGAAGTACAA
* ** * *
97648841 CAGGGGCACATAAGTGCATT
1 CAGGGGTACCGAAGTACA-A
97648861 CAGGGGTACCGAAGTACAA
1 CAGGGGTACCGAAGTACAA
*
97648880 TAGGGG
1 CAGGGG
97648886 CACGTAAGTG
Statistics
Matches: 33, Mismatches: 11, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.33, C:0.19, G:0.34, T:0.14
Consensus pattern (19 bp):
CAGGGGTACCGAAGTACAA
Found at i:97648866 original size:20 final size:20
Alignment explanation
Indices: 97648841--97648905 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
97648831 CGAAGTACAA
97648841 CAGGGGCACATAAGTGCATT
1 CAGGGGCACATAAGTGCATT
* ** * *
97648861 CAGGGGTACCGAAGTACAAT
1 CAGGGGCACATAAGTGCATT
*
97648881 -AGGGGCACGTAAGTGCATT
1 CAGGGGCACATAAGTGCATT
97648900 CAGGGG
1 CAGGGG
97648906 TACCAAAATA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
19 14 0.41
20 20 0.59
ACGTcount: A:0.29, C:0.18, G:0.35, T:0.17
Consensus pattern (20 bp):
CAGGGGCACATAAGTGCATT
Found at i:97648894 original size:19 final size:19
Alignment explanation
Indices: 97648833--97648894 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
97648823 AGGGGTACCG
* *
97648833 AAGTACAACAGGGGCACAT
1 AAGTACAATAGGGGCACGT
* * *
97648852 AAGTGCATTCAGGGGTACCG-
1 AAGTACAAT-AGGGGCA-CGT
97648872 AAGTACAATAGGGGCACGT
1 AAGTACAATAGGGGCACGT
97648891 AAGT
1 AAGT
97648895 GCATTCAGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 2 0.06
19 16 0.50
20 13 0.41
21 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.16
Consensus pattern (19 bp):
AAGTACAATAGGGGCACGT
Found at i:97648902 original size:78 final size:78
Alignment explanation
Indices: 97648789--97649031 Score: 308
Period size: 78 Copynumber: 3.1 Consensus size: 78
97648779 TTATCAGGAT
* * * * * *
97648789 TACCAAAGTACAATAAGGGCATGTAAGTGTGTTCAGGGGTACCGAAGTACAACAGGGGCACATAA
1 TACCGAAGTACAATAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTAA
97648854 GTGCATTCAGGGG
66 GTGCATTCAGGGG
* * * * *
97648867 TACCGAAGTACAATAGGGGCACGTAAGTGCATTCAGGGGTACCAAAATACAACACGGGCATGTAA
1 TACCGAAGTACAATAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTAA
97648932 GTGCATTCAGGGG
66 GTGCATTCAGGGG
* * * * *
97648945 TACCGAAGCACAACT-GGGGCACGTAAGTTTATTCAGGGGTATCGAAGTATAATAAGGGCACGTA
1 TACCGAAGTACAA-TAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTA
*
97649009 TGTGCATTCAGGGG
65 AGTGCATTCAGGGG
*
97649023 TATCGAAGT
1 TACCGAAGT
97649032 GCAACAGGTT
Statistics
Matches: 141, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
78 140 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (78 bp):
TACCGAAGTACAATAGGGGCACGTAAGTGTATTCAGGGGTACCGAAGTACAACAAGGGCACGTAA
GTGCATTCAGGGG
Found at i:97649037 original size:117 final size:117
Alignment explanation
Indices: 97648789--97649024 Score: 346
Period size: 117 Copynumber: 2.0 Consensus size: 117
97648779 TTATCAGGAT
* * * ** *
97648789 TACCAAAGTACAATAAGGGCATGTAAGTGTGTTCAGGGGTACCGAAGTACAACAGGGGCACATAA
1 TACCAAAATACAACACGGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACAGGGGCACATAA
*
97648854 GTGCATTCAGGGGTACCGAAGTACAATAGGGGCACGTAAGTGCATTCAGGGG
66 GTGCATTCAGGGGTACCGAAGTACAATAAGGGCACGTAAGTGCATTCAGGGG
* *
97648906 TACCAAAATACAACACGGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACTGGGGCACGTAA
1 TACCAAAATACAACACGGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACAGGGGCACATAA
** * * *
97648971 GTTTATTCAGGGGTATCGAAGTATAATAAGGGCACGTATGTGCATTCAGGGG
66 GTGCATTCAGGGGTACCGAAGTACAATAAGGGCACGTAAGTGCATTCAGGGG
97649023 TA
1 TA
97649025 TCGAAGTGCA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 105 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.20
Consensus pattern (117 bp):
TACCAAAATACAACACGGGCATGTAAGTGCATTCAGGGGTACCGAAGCACAACAGGGGCACATAA
GTGCATTCAGGGGTACCGAAGTACAATAAGGGCACGTAAGTGCATTCAGGGG
Found at i:97660242 original size:43 final size:43
Alignment explanation
Indices: 97660193--97660354 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 43
97660183 ATGAGATCAT
97660193 ATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTAC
1 ATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTAC
* * * *
97660236 GTGTAAGACCATGTCTGGGACAGTGGCATCAT-TA-TATGATTTC
1 ATGTAAGACCATGTCTGGGACATTGGCAT--TGTATTGTGATTAC
* * * *
97660279 ATGTAAGACCATGTCTAGGACATTGGCATCG-ATATGAGATAAC
1 ATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGTGATTAC
* *
97660322 ATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATGTAAGACCATGTCTGGGACATTGGCATTGTAT
97660355 GAGTTTTATG
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 86 0.89
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTAC
Found at i:97660339 original size:86 final size:85
Alignment explanation
Indices: 97660193--97660349 Score: 226
Period size: 86 Copynumber: 1.8 Consensus size: 85
97660183 ATGAGATCAT
* * * * * *
97660193 ATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCTGGGACA
1 ATGTAAGACCATGTCTAGGACATTGGCATCGTATTGAGATAACATGTAAGACCATATCTGGGACA
97660258 GTGGCATCATTATATGATTTC
66 -TGGCATCATTATATGATTTC
*
97660279 ATGTAAGACCATGTCTAGGACATTGGCATCG-ATATGAGATAACATGTAAGACCATATCTGGGAT
1 ATGTAAGACCATGTCTAGGACATTGGCATCGTAT-TGAGATAACATGTAAGACCATATCTGGGAC
97660343 ATGGCAT
65 ATGGCAT
97660350 TGTATGAGTT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
85 8 0.13
86 55 0.87
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
ATGTAAGACCATGTCTAGGACATTGGCATCGTATTGAGATAACATGTAAGACCATATCTGGGACA
TGGCATCATTATATGATTTC
Found at i:97664109 original size:184 final size:184
Alignment explanation
Indices: 97663800--97664156 Score: 714
Period size: 184 Copynumber: 1.9 Consensus size: 184
97663790 GGAGTGTCCT
97663800 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
1 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
97663865 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
66 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
97663930 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGTATATGTGTCGA
131 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGTATATGTGTCGA
97663984 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
1 CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
97664049 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
66 CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
97664114 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGT
131 TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGT
97664157 GTTATACCAC
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 173 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.34
Consensus pattern (184 bp):
CGAAGACTTTGAGACAGGTATGGTTGTATATGTGTCGACGTTTTGGTTAGAGGACAAATATGTAT
CTACTTTAGTGGTTAAATGTTCTGGCTGTGTGTAAAGTCTTGAGTTCAAGTCTAGCGTAGTACTA
TCCGGGCTAGAGTGCGTAGCGAAAGTGTAATGGTGTAGCTTGTATATGTGTCGA
Found at i:97664482 original size:13 final size:13
Alignment explanation
Indices: 97664464--97664491 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97664454 AGTATTTGTC
97664464 TTATTTTATTATT
1 TTATTTTATTATT
97664477 TTATTTTATTATT
1 TTATTTTATTATT
97664490 TT
1 TT
97664492 TTATTTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTTTATTATT
Found at i:97664499 original size:16 final size:16
Alignment explanation
Indices: 97664469--97664498 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97664459 TTGTCTTATT
97664469 TTATTATTTTATTTTA
1 TTATTATTTTATTTTA
97664485 TTATT-TTTTATTTT
1 TTATTATTTTATTTT
97664499 TGGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTATTATTTTATTTTA
Found at i:97664576 original size:16 final size:16
Alignment explanation
Indices: 97664555--97664591 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
97664545 TATCTTTATT
97664555 TTTTTCTTTTTCTTT-C
1 TTTTTC-TTTTCTTTCC
97664571 TTTTTCTTTTCTTTCC
1 TTTTTCTTTTCTTTCC
97664587 TTTTT
1 TTTTT
97664592 GAAAACAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTTTCTTTCC
Found at i:97666639 original size:40 final size:40
Alignment explanation
Indices: 97666580--97666796 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
97666570 GGATTGATAA
*
97666580 CCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
97666619 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
97666659 CTGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
97666699 CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
97666739 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
97666779 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
97666797 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
39 26 0.16
40 135 0.84
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:97671200 original size:14 final size:14
Alignment explanation
Indices: 97671176--97671214 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
97671166 GTATTTAGTC
97671176 TTATTTTTATTAT-
1 TTATTTTTATTATA
97671189 TTATTATTTATTATA
1 TTATT-TTTATTATA
97671204 TTATTTTTATT
1 TTATTTTTATT
97671215 TTTGGAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.21
14 14 0.58
15 5 0.21
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTTTATTATA
Found at i:97673742 original size:13 final size:13
Alignment explanation
Indices: 97673724--97673749 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97673714 GGATTTTCGA
97673724 AGTTCATCTCTTT
1 AGTTCATCTCTTT
97673737 AGTTCATCTCTTT
1 AGTTCATCTCTTT
97673750 GTTTCCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (13 bp):
AGTTCATCTCTTT
Found at i:97675453 original size:16 final size:16
Alignment explanation
Indices: 97675432--97675465 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
97675422 TATTTAACCC
97675432 AAATTAA-ATTGAATTA
1 AAATTAACATT-AATTA
97675448 AAATTAACATTAATTA
1 AAATTAACATTAATTA
97675464 AA
1 AA
97675466 TTATAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATTAACATTAATTA
Found at i:97675475 original size:16 final size:17
Alignment explanation
Indices: 97675436--97675477 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
97675426 TAACCCAAAT
97675436 TAAATTGAATTAAAATTA
1 TAAATT-AATTAAAATTA
*
97675454 -ACATTAATT-AAATTA
1 TAAATTAATTAAAATTA
97675469 TAAATTAAT
1 TAAATTAAT
97675478 ACACATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 6 0.29
16 11 0.52
17 4 0.19
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
TAAATTAATTAAAATTA
Found at i:97676461 original size:34 final size:34
Alignment explanation
Indices: 97676418--97676504 Score: 102
Period size: 34 Copynumber: 2.6 Consensus size: 34
97676408 CTAATTTGAT
* *
97676418 ATGACATTCTGATCTGATATATGTTTCTGGAAAG
1 ATGACATTCTGATATGATAAATGTTTCTGGAAAG
* * * * *
97676452 ATGACATTCTAATTTGATAAATGTTTTTGGTAAT
1 ATGACATTCTGATATGATAAATGTTTCTGGAAAG
*
97676486 ATGACATTTTGATATGATA
1 ATGACATTCTGATATGATA
97676505 GTTGTATATG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (34 bp):
ATGACATTCTGATATGATAAATGTTTCTGGAAAG
Found at i:97678792 original size:28 final size:28
Alignment explanation
Indices: 97678672--97678806 Score: 189
Period size: 28 Copynumber: 4.8 Consensus size: 28
97678662 GCAATCAAAT
* *
97678672 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
97678700 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97678728 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
97678756 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * * *
97678784 ATGACACTTCGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
97678807 CGAATGATTC
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 99 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:97678983 original size:44 final size:43
Alignment explanation
Indices: 97678935--97679029 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 43
97678925 CGGGCTTTGA
* *
97678935 GCCTAGCAAGCTTTAA-GCTAGTGAATAATATTATCAGGCTTCGG
1 GCCTAGCAAGCTATAATGCTAGTGAA-AATA-TATCAGGCTTCAG
* * * **
97678979 GCCTAGCAGGCTATAATGCTGGTGAAATTATATTGGGCTTCAG
1 GCCTAGCAAGCTATAATGCTAGTGAAAATATATCAGGCTTCAG
97679022 GCCTAGCA
1 GCCTAGCA
97679030 GGCGAAATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
43 18 0.42
44 17 0.40
45 8 0.19
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
GCCTAGCAAGCTATAATGCTAGTGAAAATATATCAGGCTTCAG
Found at i:97679754 original size:53 final size:53
Alignment explanation
Indices: 97679691--97679796 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
97679681 GAAGTGGCGC
*
97679691 GGGATAGAGTCAAATGACTTCGGGGTCCCCTATTCTATTTTTAGAAAATCATT
1 GGGATAGAGTCAAATGAATTCGGGGTCCCCTATTCTATTTTTAGAAAATCATT
97679744 GGGATAGAGTCAAATGAATTCGGGGTCCCCTATTCTATTTTTAGAAAATCATT
1 GGGATAGAGTCAAATGAATTCGGGGTCCCCTATTCTATTTTTAGAAAATCATT
97679797 ATAATTTGTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (53 bp):
GGGATAGAGTCAAATGAATTCGGGGTCCCCTATTCTATTTTTAGAAAATCATT
Found at i:97681809 original size:46 final size:46
Alignment explanation
Indices: 97681689--97681812 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
97681679 AACCCGCCCC
* * *
97681689 TAAGTGAACTCGGACTCAACTTAACGAGCTCAAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAAGCATTCGCATCCA
97681735 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-AAGCATTCGCATCCA
97681781 TAAGTGAACTCGGACTCAACTCAACGAGTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCA
97681813 GATGCTCAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
45 1 0.01
46 71 0.96
47 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAAGCATTCGCATCCA
Found at i:97682269 original size:30 final size:30
Alignment explanation
Indices: 97682235--97682294 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97682225 ATTTAATACG
97682235 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97682265 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97682295 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97688319 original size:28 final size:28
Alignment explanation
Indices: 97688279--97689141 Score: 1663
Period size: 28 Copynumber: 30.8 Consensus size: 28
97688269 GCAATCAAAT
*
97688279 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688307 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688335 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688363 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688391 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688419 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688447 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688475 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688503 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688531 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688559 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688587 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688615 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688643 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688671 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688699 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688727 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688755 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688783 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688811 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688839 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688867 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688895 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688923 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688951 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97688979 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97689007 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97689035 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
97689063 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
97689091 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * * *
97689119 ATGACACTTCGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
97689142 CGAATGATTC
Statistics
Matches: 828, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 828 1.00
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:97690609 original size:50 final size:50
Alignment explanation
Indices: 97690534--97690632 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
97690524 TAGGATTGTT
97690534 AGGTTTGCTCGGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCC
1 AGGTTTGCTCGGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCC
*
97690584 AGGTTTTCTCGGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGC
1 AGGTTTGCTCGGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGC
97690633 TAACGCTATT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (50 bp):
AGGTTTGCTCGGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCC
Found at i:97692640 original size:38 final size:38
Alignment explanation
Indices: 97692557--97692709 Score: 189
Period size: 38 Copynumber: 4.0 Consensus size: 38
97692547 GAATCTAGTC
* * * * *
97692557 ACCAGCACAAAGCCTACGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGAC-TTAA-CCCGGATATATT
* * *
97692597 ACCAGCACTAAGCTTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
*
97692635 ACCAGCACGAAGCCTGGGGGACTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
* *
97692673 ACTAGCACGAGGCCTGCGGGACTTAACCCGGATATAT
1 ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATAT
97692710 ATCGAGTGCT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 77 0.78
39 4 0.04
40 18 0.18
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGACTTAACCCGGATATATT
Found at i:97696420 original size:33 final size:33
Alignment explanation
Indices: 97696378--97696443 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
97696368 ACAACTCGAC
97696378 CTTCTTGCATCAATACACAACCCAACCCATTTA
1 CTTCTTGCATCAATACACAACCCAACCCATTTA
97696411 CTTCTTGCATCAATACACAACCCAACCCATTTA
1 CTTCTTGCATCAATACACAACCCAACCCATTTA
97696444 AGGATGCATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.36, G:0.03, T:0.27
Consensus pattern (33 bp):
CTTCTTGCATCAATACACAACCCAACCCATTTA
Found at i:97699394 original size:28 final size:28
Alignment explanation
Indices: 97699362--97699452 Score: 103
Period size: 29 Copynumber: 3.2 Consensus size: 28
97699352 TACATACATG
*
97699362 CATATGGCCCACTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* *
97699390 CATATGGCCCATTAGGCTCAAATCACATT
1 CATATGGCCCATTAGGC-CCAATCTCATT
* *
97699419 CGTATGGTCCATTAGGCCCAAGTCAT-ATT
1 CATATGGCCCATTAGGCCCAA-TC-TCATT
97699448 CATAT
1 CATAT
97699453 TCATGCTTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 19 0.37
29 33 0.63
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCTCATT
Found at i:97724695 original size:54 final size:54
Alignment explanation
Indices: 97724631--97724736 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
97724621 CTCCTGAGAC
* *
97724631 CACCAGTACCTAAAATAAGATGTTCAACACCTTTTAGTAACAAAAAATGAGCCT
1 CACCAGTACCTAAAATAAGAAGTTCAACACCTTTCAGTAACAAAAAATGAGCCT
* * * *
97724685 CACCAGTACCTAATATAGGAAGTTTAACACCTTTCAGTAACCAAAAATGAGC
1 CACCAGTACCTAAAATAAGAAGTTCAACACCTTTCAGTAACAAAAAATGAGC
97724737 TTTATATGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.24
Consensus pattern (54 bp):
CACCAGTACCTAAAATAAGAAGTTCAACACCTTTCAGTAACAAAAAATGAGCCT
Found at i:97729513 original size:130 final size:130
Alignment explanation
Indices: 97729280--97729539 Score: 475
Period size: 130 Copynumber: 2.0 Consensus size: 130
97729270 AAAGAGACAT
97729280 CTCCGAATTTGTATCAAAATACTTGATATGTTAGCAAGTCAAAGCTGAACACTAAGTACTTTCAG
1 CTCCGAATTTGTATCAAAATACTTGATATGTTAGCAAGTCAAAGCTGAACACTAAGTACTTTCAG
* * *
97729345 GTTTGTTACAGCCTGTGATGGTCCCCAAGTGGAAGTGGAATAGGATTACTATGGATTTCATGATG
66 GTTTGCTACAGCCTGTGATGGACCCCAAGTGGAAGTGGAATAGGATTACCATGGATTTCATGATG
*
97729410 CTCCGAATTTGTATCAAAATGCTTGATATGTTAGCAAGTCAAAGCTGAACACTAAGTACTTTCAG
1 CTCCGAATTTGTATCAAAATACTTGATATGTTAGCAAGTCAAAGCTGAACACTAAGTACTTTCAG
*
97729475 GTTTGCTACAGCCTGTGATGGACCCCAAGTGGAAGTGGAATAGGATTACCATGGATTTCGTGATG
66 GTTTGCTACAGCCTGTGATGGACCCCAAGTGGAAGTGGAATAGGATTACCATGGATTTCATGATG
97729540 GGATTACCAT
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
130 125 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (130 bp):
CTCCGAATTTGTATCAAAATACTTGATATGTTAGCAAGTCAAAGCTGAACACTAAGTACTTTCAG
GTTTGCTACAGCCTGTGATGGACCCCAAGTGGAAGTGGAATAGGATTACCATGGATTTCATGATG
Found at i:97734508 original size:42 final size:41
Alignment explanation
Indices: 97734444--97734532 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 41
97734434 AATACTTCTG
* *
97734444 CAGCCAGTGTAGTGAACTCGAGATTTGTTAAACCCGAGTGC
1 CAGCGAGTGTAGGGAACTCGAGATTTGTTAAACCCGAGTGC
97734485 CAGCGNAGTGTAGGGAACTCGAGATTTGTTAAACCCGAGTGC
1 CAGCG-AGTGTAGGGAACTCGAGATTTGTTAAACCCGAGTGC
97734527 CAGCGA
1 CAGCGA
97734533 TGTGGTAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 5 0.11
42 40 0.89
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.21
Consensus pattern (41 bp):
CAGCGAGTGTAGGGAACTCGAGATTTGTTAAACCCGAGTGC
Found at i:97738730 original size:92 final size:92
Alignment explanation
Indices: 97738573--97738755 Score: 339
Period size: 92 Copynumber: 2.0 Consensus size: 92
97738563 AAATTAAAAG
* *
97738573 CCAATTTTTGTCCATCTTCTTCATTAGGCCGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTT
1 CCAATTTTTGTCCATCTTCTTCATTAGGCCAAAATTTCAAGGGTTCTCCATAGCTAGGATTTGTT
97738638 TCAAGCTTCCAAGCTCCATAGTAAGTA
66 TCAAGCTTCCAAGCTCCATAGTAAGTA
97738665 CCAATTTTTGTCCATCTTCTTCATTAGGCCAAAATTTCAAGGGTTCTCCATAGCTAGGATTTGTT
1 CCAATTTTTGTCCATCTTCTTCATTAGGCCAAAATTTCAAGGGTTCTCCATAGCTAGGATTTGTT
*
97738730 TCAAGCTTCCAATCTCCATAGTAAGT
66 TCAAGCTTCCAAGCTCCATAGTAAGT
97738756 GATTTGACCA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (92 bp):
CCAATTTTTGTCCATCTTCTTCATTAGGCCAAAATTTCAAGGGTTCTCCATAGCTAGGATTTGTT
TCAAGCTTCCAAGCTCCATAGTAAGTA
Found at i:97745581 original size:40 final size:40
Alignment explanation
Indices: 97745488--97745712 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
97745478 TTGAATGATG
* * *
97745488 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** *
97745527 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
97745567 TCCAGATTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
97745607 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
97745647 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
97745688 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
97745713 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 19 0.11
40 139 0.83
41 9 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:97751841 original size:24 final size:25
Alignment explanation
Indices: 97751814--97751865 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
97751804 GCCTAGCCTC
97751814 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
** *
97751838 TTTTGGTAAATTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
97751863 TTT
1 TTT
97751866 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:97751940 original size:21 final size:22
Alignment explanation
Indices: 97751916--97751973 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
97751906 AATGAGTATA
97751916 TCATAGCATATCATGTGCAT-C
1 TCATAGCATATCATGTGCATAC
*
97751937 TCATAACATATCATGTGCATAC
1 TCATAGCATATCATGTGCATAC
97751959 -CAT-GTCATATCATGT
1 TCATAG-CATATCATGT
97751974 ATAACAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATAGCATATCATGTGCATAC
Found at i:97752442 original size:24 final size:24
Alignment explanation
Indices: 97752395--97752466 Score: 63
Period size: 25 Copynumber: 2.9 Consensus size: 24
97752385 GCTTTATCAT
** *
97752395 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTTA
*
97752420 ATAACTGGGGCAAAGCCTTTTTTG
1 ATAACTGGGGCAAAGCCTTTTTTA
* * *
97752444 GTAAATTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCTTTTT
97752467 CGCACTTCCT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 13 0.33
25 26 0.67
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTTTTTTA
Found at i:97752722 original size:601 final size:601
Alignment explanation
Indices: 97751580--97752781 Score: 2368
Period size: 601 Copynumber: 2.0 Consensus size: 601
97751570 TCATAAATCA
97751580 CATCACTGGGCCGAAGCCATTACTATAAACGATATGGCCCATAGGGCCATTTCAATACCACATGA
1 CATCACTGGGCCGAAGCCATTACTATAAACGATATGGCCCATAGGGCCATTTCAATACCACATGA
97751645 AATACCAATGAATGTATGCAAGCCCATTTGGGGAGACTACTCAACCCACCATCCACTACTCTCCA
66 AATACCAATGAATGTATGCAAGCCCATTTGGGGAGACTACTCAACCCACCATCCACTACTCTCCA
*
97751710 CCCGTACCAACCAAGCTCTCCATGTGGGGAATAACTCAACCCCCCCAACCAAACTCTCCACTGGC
131 CCCGTACCAACCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCACTGGC
97751775 AGCATAGCCGCTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTT
196 AGCATAGCCGCTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTT
97751840 TTGGTAAATTGGGGCAAAGCCCTTTTCGCACTTCCTCCATTTATATAAAACCCAACCCATGCATG
261 TTGGTAAATTGGGGCAAAGCCCTTTTCGCACTTCCTCCATTTATATAAAACCCAACCCATGCATG
97751905 TAATGAGTATATCATAGCATATCATGTGCATCTCATAACATATCATGTGCATACCATGTCATATC
326 TAATGAGTATATCATAGCATATCATGTGCATCTCATAACATATCATGTGCATACCATGTCATATC
*
97751970 ATGTATAACAATATCTCATGCATCATATTCATAATTAAACCCTAGGGGGTATAATGGTCATTTTT
391 ATGTATAACAATATCTCATACATCATATTCATAATTAAACCCTAGGGGGTATAATGGTCATTTTT
97752035 ACCTAGGGGCAAAATAGTAATTTTTCATATTATAAGGATAATTTCGTAATTTTACCAAATATCAT
456 ACCTAGGGGCAAAATAGTAATTTTTCATATTATAAGGATAATTTCGTAATTTTACCAAATATCAT
97752100 GGGCTTCCAGGTTCATTAGCAATTTCCAATATTTTCGAGTGTTTAAACAATGATCTTTAACCCAC
521 GGGCTTCCAGGTTCATTAGCAATTTCCAATATTTTCGAGTGTTTAAACAATGATCTTTAACCCAC
97752165 TTATCAAATTCGGGCT
586 TTATCAAATTCGGGCT
97752181 CATCACTGGGCCGAAGCCATTACTATAAACGATATGGCCCATAGGGCCATTTCAATACCACATGA
1 CATCACTGGGCCGAAGCCATTACTATAAACGATATGGCCCATAGGGCCATTTCAATACCACATGA
97752246 AATACCAATGAATGTATGCAAGCCCATTTGGGGAGACTACTCAACCCACCATCCACTACTCTCCA
66 AATACCAATGAATGTATGCAAGCCCATTTGGGGAGACTACTCAACCCACCATCCACTACTCTCCA
97752311 CCCGTACCAACCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCACTGGC
131 CCCGTACCAACCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCACTGGC
*
97752376 AGCATAGCCGCTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCTTTT
196 AGCATAGCCGCTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTT
97752441 TTGGTAAATTGGGGCAAAGCCCTTTTCGCACTTCCTCCATTTATATAAAACCCAACCCATGCATG
261 TTGGTAAATTGGGGCAAAGCCCTTTTCGCACTTCCTCCATTTATATAAAACCCAACCCATGCATG
*
97752506 TAATGAGTATATCATAGCATATCATGTGCATCTCATAACATATCATGTGTATACCATGTCATATC
326 TAATGAGTATATCATAGCATATCATGTGCATCTCATAACATATCATGTGCATACCATGTCATATC
97752571 ATGTATAACAATATCTCATACATCATATTCATAATTAAACCCTAGGGGGTATAATGGTCATTTTT
391 ATGTATAACAATATCTCATACATCATATTCATAATTAAACCCTAGGGGGTATAATGGTCATTTTT
97752636 ACCTAGGGGCAAAATAGTAATTTTTCATATTATAAGGATAATTTCGTAATTTTACCAAATATCAT
456 ACCTAGGGGCAAAATAGTAATTTTTCATATTATAAGGATAATTTCGTAATTTTACCAAATATCAT
97752701 GGGCTTCCAGGTTCATTAGCAATTTCCAATATTTTCGAGTGTTTAAACAATGATCTTTAACCCAC
521 GGGCTTCCAGGTTCATTAGCAATTTCCAATATTTTCGAGTGTTTAAACAATGATCTTTAACCCAC
97752766 TTATCAAATTCGGGCT
586 TTATCAAATTCGGGCT
97752782 TTTGGGCCCA
Statistics
Matches: 597, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
601 597 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (601 bp):
CATCACTGGGCCGAAGCCATTACTATAAACGATATGGCCCATAGGGCCATTTCAATACCACATGA
AATACCAATGAATGTATGCAAGCCCATTTGGGGAGACTACTCAACCCACCATCCACTACTCTCCA
CCCGTACCAACCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCACTGGC
AGCATAGCCGCTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTT
TTGGTAAATTGGGGCAAAGCCCTTTTCGCACTTCCTCCATTTATATAAAACCCAACCCATGCATG
TAATGAGTATATCATAGCATATCATGTGCATCTCATAACATATCATGTGCATACCATGTCATATC
ATGTATAACAATATCTCATACATCATATTCATAATTAAACCCTAGGGGGTATAATGGTCATTTTT
ACCTAGGGGCAAAATAGTAATTTTTCATATTATAAGGATAATTTCGTAATTTTACCAAATATCAT
GGGCTTCCAGGTTCATTAGCAATTTCCAATATTTTCGAGTGTTTAAACAATGATCTTTAACCCAC
TTATCAAATTCGGGCT
Found at i:97758735 original size:6 final size:6
Alignment explanation
Indices: 97758705--97758838 Score: 87
Period size: 6 Copynumber: 21.8 Consensus size: 6
97758695 AAGAAACATT
* * *
97758705 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
97758754 ACCAGA ATCAGA ATCAGA ATCAGGTG AT-AGA ATTAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* * *
97758803 ATCAGGTA A-CAGA ATCAAA ATTAGA ATCAGT ATCAG
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
97758839 GTAACAGAAT
Statistics
Matches: 99, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 6 0.06
6 81 0.82
7 9 0.09
8 3 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:97758763 original size:31 final size:31
Alignment explanation
Indices: 97758726--97758867 Score: 167
Period size: 31 Copynumber: 4.5 Consensus size: 31
97758716 AATCAAAATG
* *
97758726 AGAATCAGAATCAGAATCAGGTGACAGAACC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
97758757 AGAATCAGAATCAGAATCAGGTGATAGAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
97758788 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * * *
97758819 AAAATTAGAATCAGTATCAGGTAACAGAATTA
1 AGAATCAGAATCAGAATCAGGTAACAGAA-TC
* *
97758851 AAAATCAGAATGAGAAT
1 AGAATCAGAATCAGAAT
97758868 GCAATCCCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
31 82 0.85
32 15 0.15
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:97759083 original size:27 final size:26
Alignment explanation
Indices: 97759035--97759086 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
97759025 GCGAGGCTGC
*
97759035 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
97759061 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
97759087 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:97759352 original size:27 final size:27
Alignment explanation
Indices: 97759322--97759759 Score: 515
Period size: 27 Copynumber: 16.2 Consensus size: 27
97759312 CAACACCCTA
* * *
97759322 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
97759349 AGGGTAAAAC-GATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
** *
97759376 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
97759403 AGGGTAAAACAGTAATTATGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
97759430 AGGGTAAAACAGTAATTATGTAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
97759457 AGGGTAAAATAGTAATTCTATAACTCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
97759484 AGGGTAAAACAGTAATTCTATGAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
97759511 AGGGTAAAAC-GATAATTCTATAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
* * *
97759538 AGAGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
97759565 AGGGTAAAATAGTAACTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
97759592 AGGGTAAAATAGTAACTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
97759619 AGGGTAAAATAATAATTCTGTAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
97759646 AGGGTAAAAC-GATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
* * *
97759673 AGGGTAAAAC-GATAATTTTTTAAATCA
1 AGGGTAAAACAG-TAATTCTGTAAATCG
97759700 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
97759727 AGGGTAAAACAATAATTTTGTAATTCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
97759754 AGGGTA
1 AGGGTA
97759760 CTTTGATAAT
Statistics
Matches: 365, Mismatches: 40, Indels: 12
0.88 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 360 0.99
28 3 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTGTAAATCG
Found at i:97759772 original size:81 final size:81
Alignment explanation
Indices: 97759322--97759759 Score: 567
Period size: 81 Copynumber: 5.4 Consensus size: 81
97759312 CAACACCCTA
* * *
97759322 AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATG
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATA
*
97759387 GTAATTCTATAAATCG
66 GTAATTCTGTAAATCG
* * *
97759403 AGGGTAAAACAGTAATTATGTAAATCGAGGGTAAAAC-AGTAATTATGTAAATCAAGGGTAAAAT
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAATCGAGGGTAAAAT
* *
97759467 AGTAATTCTATAACTCG
65 AGTAATTCTGTAAATCG
* * * * * *
97759484 AGGGTAAAACAGTAATTCTATGAATCGAGGGTAAAACGATAATTCTATAAATCGAGAGTAAAATA
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATA
*
97759549 GTAATTTTGTAAATCG
66 GTAATTCTGTAAATCG
* * * * * *
97759565 AGGGTAAAATAGTAACTCTGTAAATCGAGGGTAAAA-TAGTAACTCTGTAAATCGAGGGTAAAAT
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAATCGAGGGTAAAAT
* *
97759629 AATAATTCTGTAAATCA
65 AGTAATTCTGTAAATCG
* * *
97759646 AGGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACGATAATTTTTTAAATCAAGGGTAAAAC
1 AGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAT
97759710 AGTAATTCTGTAAATCG
65 AGTAATTCTGTAAATCG
* *
97759727 AGGGTAAAACAATAATTTTGTAATTCGAGGGTA
1 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
97759760 CTTTGATAAT
Statistics
Matches: 310, Mismatches: 41, Indels: 12
0.85 0.11 0.03
Matches are distributed among these distances:
80 3 0.01
81 305 0.98
82 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATA
GTAATTCTGTAAATCG
Found at i:97759797 original size:54 final size:53
Alignment explanation
Indices: 97759752--97759884 Score: 160
Period size: 54 Copynumber: 2.5 Consensus size: 53
97759742 TTTTGTAATT
* ** * * *
97759752 CGAGGGTACTTTGATAATTTTACATGTCGAGGATATTTTAGTAATTTTACAAA
1 CGAGGGTACTTTGGTAATTTTACAAATCGAGAATATTTGAGTAATTTTATAAA
*
97759805 CTGAGGGTA-TTTCGGTAATTTTACAAATCGAGAATATTTGGGTAATTTTATAAA
1 C-GAGGGTACTTT-GGTAATTTTACAAATCGAGAATATTTGAGTAATTTTATAAA
*
97759859 CCGGGGGTACTTTGGTAATTTTACAA
1 -CGAGGGTACTTTGGTAATTTTACAA
97759885 CTGGGGTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
53 4 0.06
54 60 0.88
55 4 0.06
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (53 bp):
CGAGGGTACTTTGGTAATTTTACAAATCGAGAATATTTGAGTAATTTTATAAA
Found at i:97759875 original size:27 final size:27
Alignment explanation
Indices: 97759752--97759884 Score: 108
Period size: 27 Copynumber: 4.9 Consensus size: 27
97759742 TTTTGTAATT
* ***
97759752 CGAGGGTACTTT-GATAATTTTACATGT
1 CGAGGGTA-TTTCGGTAATTTTACAAAC
* **
97759779 CGAGGATATTTTAGTAATTTTACAAAC
1 CGAGGGTATTTCGGTAATTTTACAAAC
* *
97759806 TGAGGGTATTTCGGTAATTTTACAAAT
1 CGAGGGTATTTCGGTAATTTTACAAAC
** * *
97759833 CGAGAATATTTGGGTAATTTTATAAAC
1 CGAGGGTATTTCGGTAATTTTACAAAC
*
97759860 CGGGGGTACTTT-GGTAATTTTACAA
1 CGAGGGTA-TTTCGGTAATTTTACAA
97759885 CTGGGGTTAT
Statistics
Matches: 83, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 3 0.04
27 77 0.93
28 3 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
CGAGGGTATTTCGGTAATTTTACAAAC
Found at i:97762296 original size:27 final size:27
Alignment explanation
Indices: 97762266--97762716 Score: 267
Period size: 27 Copynumber: 16.2 Consensus size: 27
97762256 TAACACCCTA
* *
97762266 AGGGTAAAACGGTAATTTCATAAATTG
1 AGGGTAAAACAGTAATTTCATAAATCG
* *
97762293 AGGGTAAAAC-GATAACTTT-GTAAATTG
1 AGGGTAAAACAG-TAA-TTTCATAAATCG
* **
97762320 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTCATAAATCG
*
97762347 AGGGTAAAATAGTAA-TTCTATAAATCG
1 AGGGTAAAACAGTAATTTC-ATAAATCG
* *
97762374 AGGGTAAAACAGTAA-TTCTATCAATAG
1 AGGGTAAAACAGTAATTTC-ATAAATCG
* *
97762401 AGGGTAAAA-TGATAATTTTATAAATCG
1 AGGGTAAAACAG-TAATTTCATAAATCG
** *
97762428 AGGGTAAAACAGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTTCATAAATCG
*
97762455 AGGGTAAAACAGTAA-TTCTTTAAATCG
1 AGGGTAAAACAGTAATTTC-ATAAATCG
**
97762482 AGGGTAAAATGGTAA-TTCTATAAATCG
1 AGGGTAAAACAGTAATTTC-ATAAATCG
* * **
97762509 AGGTTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTA--AA---A----CA----GTAATTTCATAAATCG
* **
97762549 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTCATAAATCG
* *
97762576 AGGGTAAAATAGTAACTCTGT-A-AAAT-A
1 AGGGTAAAACAGTAA-T-T-TCATAAATCG
*
97762603 AGGGTAAAACAGTAA-TTCTATAAATCA
1 AGGGTAAAACAGTAATTTC-ATAAATCG
* ** *
97762630 AGGGTAAAATAGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTTCATAAATCG
* **
97762657 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTCATAAATCG
** *
97762684 AGGGTAAAACAGTAATTTTGTAATTCG
1 AGGGTAAAACAGTAATTTCATAAATCG
97762711 AGGGTA
1 AGGGTA
97762717 CTTTGATAAT
Statistics
Matches: 354, Mismatches: 39, Indels: 62
0.78 0.09 0.14
Matches are distributed among these distances:
23 1 0.00
24 1 0.00
25 1 0.00
26 13 0.04
27 297 0.84
28 14 0.04
29 3 0.01
30 1 0.00
31 1 0.00
32 1 0.00
35 1 0.00
38 2 0.01
40 16 0.05
41 2 0.01
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTCATAAATCG
Found at i:97762335 original size:54 final size:55
Alignment explanation
Indices: 97762266--97762716 Score: 307
Period size: 54 Copynumber: 8.1 Consensus size: 55
97762256 TAACACCCTA
* * * *
97762266 AGGGTAAAACGGTAATTTCATAAATTGAGGGTAAAACGA-TAACTT-TGTAAATTG
1 AGGGTAAAACAGTAATTTCATAAATCGAGGGTAAAACGAGTAA-TTCTATAAATCG
* ** *
97762320 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTTCATAAATCGAGGGTAAAACGAGTAATTCTATAAATCG
* * * *
97762374 AGGGTAAAACAGTAA-TTCTATCAATAGAGGGTAAAATGA-TAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTC-ATAAATCGAGGGTAAAACGAGTAATTCTATAAATCG
** * *
97762428 AGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAAC-AGTAATTCTTTAAATCG
1 AGGGTAAAACAGTAATTTCATAAATCGAGGGTAAAACGAGTAATTCTATAAATCG
** * *
97762482 AGGGTAAAATGGTAA-TTCTATAAATCGAGGTTATCAATCGAGGGTAAAACG-GTAATTTTGTAA
1 AGGGTAAAACAGTAATTTC-ATAAATC---G------A--G-G-GTAAAACGAGTAATTCTATAA
97762545 ATCG
52 ATCG
* ** * * * *
97762549 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAA-TAGTAACTCTGTAAAAT-A
1 AGGGTAAAACAGTAATTTCATAAATCGAGGGTAAAACGAGTAATTCTAT-AAATCG
* * * * *
97762603 AGGGTAAAACAGTAA-TTCTATAAATCAAGGGTAAAA-TAGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTTC-ATAAATCGAGGGTAAAACGAGTAATTCTATAAATCG
* ** * * *
97762657 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTTTGTAATTCG
1 AGGGTAAAACAGTAATTTCATAAATCGAGGGTAAAACGAGTAATTCTATAAATCG
97762711 AGGGTA
1 AGGGTA
97762717 CTTTGATAAT
Statistics
Matches: 320, Mismatches: 49, Indels: 56
0.75 0.12 0.13
Matches are distributed among these distances:
53 14 0.04
54 247 0.77
55 10 0.03
56 1 0.00
58 1 0.00
63 1 0.00
64 1 0.00
65 1 0.00
66 1 0.00
67 41 0.13
68 2 0.01
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (55 bp):
AGGGTAAAACAGTAATTTCATAAATCGAGGGTAAAACGAGTAATTCTATAAATCG
Found at i:97762404 original size:81 final size:81
Alignment explanation
Indices: 97762266--97762716 Score: 408
Period size: 81 Copynumber: 5.4 Consensus size: 81
97762256 TAACACCCTA
* * * *
97762266 AGGGTAAAACGGTAATTTCATAAATTGAGGGTAAAAC-GATAACTT-TGTAAATTGAGGGTAAAA
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAG-TAA-TTCTGTAAATAGAGGGTAAAA
97762329 TAGTAATTTTGTAAATCG
64 TAGTAATTTTGTAAATCG
* * * *
97762347 AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATCAATAGAGGGTAAAAT-
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATAGAGGGTAAAATA
*
97762411 GATAATTTTATAAATCG
66 G-TAATTTTGTAAATCG
* * * * *
97762428 AGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTTTAAATCGAGGGTAAAATG
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATAGAGGGTAAAATA
* *
97762493 GTAATTCTATAAATCG
66 GTAATTTTGTAAATCG
* * * * *
97762509 AGGTTATCAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAAT
1 AGG------GT--A----AA-ACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAAT
* * * *
97762574 CGAGGGTAAAATAGTAACTCTGTAAAAT-A
53 AGAGGGTAAAATAGTAATTTTGT-AAATCG
* * * * *
97762603 AGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAATTTTGTAAATCA-AGGGTAAAAC
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAAT-AGAGGGTAAAAT
*
97762667 GGTAATTTTGTAAATCG
65 AGTAATTTTGTAAATCG
* *
97762684 AGGGTAAAACAGTAATTTTGTAATTCGAGGGTA
1 AGGGTAAAACAGTAATTTTATAAATCGAGGGTA
97762717 CTTTGATAAT
Statistics
Matches: 308, Mismatches: 42, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
80 7 0.02
81 225 0.73
82 4 0.01
86 1 0.00
87 1 0.00
88 1 0.00
89 1 0.00
93 2 0.01
94 62 0.20
95 4 0.01
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATAGAGGGTAAAATA
GTAATTTTGTAAATCG
Found at i:97762537 original size:67 final size:67
Alignment explanation
Indices: 97762450--97762578 Score: 197
Period size: 67 Copynumber: 1.9 Consensus size: 67
97762440 TAATTTTGTA
*
97762450 AATCAAGGGTAAAACAGTAATTCTT-TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGTT
1 AATCAAGGGTAAAACAGTAATT-TTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGTT
97762514 ATC
65 ATC
* * * *
97762517 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGG
1 AATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGG
97762579 GTAAAATAGT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 2 0.04
67 54 0.96
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (67 bp):
AATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGTTA
TC
Found at i:97762767 original size:27 final size:27
Alignment explanation
Indices: 97762737--97762862 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
97762727 TTTACATGTC
* *
97762737 GAGGGTATTTCAGTAATTTTGCAAACT
1 GAGGGTATTTCGGTAATTTTACAAACT
97762764 GAGGGTATTTCGGTAATTTTACAAA-T
1 GAGGGTATTTCGGTAATTTTACAAACT
** * * * *
97762790 CGAGAATATTTGGGTACTTTTATAAACC
1 -GAGGGTATTTCGGTAATTTTACAAACT
*
97762818 GAGGGTACTTT-GGTAATTTTAC-AATT
1 GAGGGTA-TTTCGGTAATTTTACAAACT
* *
97762844 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
97762863 GGTAGACTAA
Statistics
Matches: 79, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.04
26 16 0.20
27 57 0.72
28 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
GAGGGTATTTCGGTAATTTTACAAACT
Found at i:97762768 original size:54 final size:52
Alignment explanation
Indices: 97762693--97762862 Score: 155
Period size: 54 Copynumber: 3.2 Consensus size: 52
97762683 GAGGGTAAAA
* * *
97762693 CAGTAATTTTGTAATTCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTT
1 CAGTAATTTTGAAACT-GAGGGTACTTTGGTAATTTTACAT-TCGAGGGTATTT
* **
97762747 CAGTAATTTTGCAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGAATATTT
1 CAGTAATTTTG-AAACTGAGGGTACTTT-GGTAATTTTAC-ATTCGAGGGTATTT
** * * * *
97762801 GGGTACTTTTATAAACCGAGGGTACTTTGGTAATTTTACAATT-GGGGGTATTT
1 CAGTAATTTT-GAAACTGAGGGTACTTTGGTAATTTTAC-ATTCGAGGGTATTT
97762854 CAGTAATTT
1 CAGTAATTT
97762863 GGTAGACTAA
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
53 16 0.17
54 70 0.75
55 7 0.08
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (52 bp):
CAGTAATTTTGAAACTGAGGGTACTTTGGTAATTTTACATTCGAGGGTATTT
Found at i:97762970 original size:21 final size:21
Alignment explanation
Indices: 97762944--97762984 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
97762934 CCACACGCTC
97762944 GTGTGGCCCTTTTAGCCCAAA
1 GTGTGGCCCTTTTAGCCCAAA
97762965 GTGTGGCCCTTTTAGCCCAA
1 GTGTGGCCCTTTTAGCCCAA
97762985 CTCTAGCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.29, G:0.24, T:0.29
Consensus pattern (21 bp):
GTGTGGCCCTTTTAGCCCAAA
Found at i:97765102 original size:30 final size:30
Alignment explanation
Indices: 97765066--97765122 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
97765056 ACTATGTGTA
*
97765066 AGACCATATCTGGGATATGGCATCAATACG
1 AGACCATATCTAGGATATGGCATCAATACG
*
97765096 AGACCATATTTAGGATATGGCATCAAT
1 AGACCATATCTAGGATATGGCATCAAT
97765123 GTGAGATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (30 bp):
AGACCATATCTAGGATATGGCATCAATACG
Found at i:97772584 original size:42 final size:41
Alignment explanation
Indices: 97772433--97772585 Score: 148
Period size: 42 Copynumber: 3.7 Consensus size: 41
97772423 TGAGACTATG
* * *
97772433 TGTAAAGCCATATCT-GGAATATGACATCAATATGAGACTTCA
1 TGTAAAACCATATCTAGG-ATATGGCATCGATATGAGA-TTCA
* * * **
97772475 TGTAAGACCATATCTGGGATATGGCATCGATGTGAGATTTTT
1 TGTAAAACCATATCTAGGATATGGCATCGATATGAGA-TTCA
* * *
97772517 TGTAAGA-CATAGCTAGGCTATTGGCATCGATATGAGATTACA
1 TGTAAAACCATATCTAGGATA-TGGCATCGATATGAGATT-CA
97772559 TGTAAAACCATATCTAGGATATGGCAT
1 TGTAAAACCATATCTAGGATATGGCAT
97772586 TGGTATGGTA
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 12 0.13
42 65 0.72
43 13 0.14
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (41 bp):
TGTAAAACCATATCTAGGATATGGCATCGATATGAGATTCA
Found at i:97773585 original size:13 final size:13
Alignment explanation
Indices: 97773567--97773596 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
97773557 GGCACGGGCA
97773567 TGTGCCCTAGGCG
1 TGTGCCCTAGGCG
*
97773580 TGTGCCCTGGGCG
1 TGTGCCCTAGGCG
97773593 TGTG
1 TGTG
97773597 AAGTCTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.03, C:0.27, G:0.43, T:0.27
Consensus pattern (13 bp):
TGTGCCCTAGGCG
Found at i:97777500 original size:348 final size:348
Alignment explanation
Indices: 97776863--97777559 Score: 1394
Period size: 348 Copynumber: 2.0 Consensus size: 348
97776853 GAAACCGAGA
97776863 TAGCTTAATATATCTATTTGGGGGATAAATTTGAAGAATTATCAAAGTATGGAAATTAGGTCATG
1 TAGCTTAATATATCTATTTGGGGGATAAATTTGAAGAATTATCAAAGTATGGAAATTAGGTCATG
97776928 GATGTATATGCTGAAAATTATAAATTTATGGTAGAAAATGAAAGGTTATTGATAGATAAACAACT
66 GATGTATATGCTGAAAATTATAAATTTATGGTAGAAAATGAAAGGTTATTGATAGATAAACAACT
97776993 TTTGCAAAGTGATTTTTGATAAAAACATGATTTAGGGACTAAAATGTAAAGTTATGAATATTGAT
131 TTTGCAAAGTGATTTTTGATAAAAACATGATTTAGGGACTAAAATGTAAAGTTATGAATATTGAT
97777058 GAAAAATTTTGAAATTTATAGAAAATATGTGCTGTAAATTCTATATTGAAATTTTGGTTAGGCTT
196 GAAAAATTTTGAAATTTATAGAAAATATGTGCTGTAAATTCTATATTGAAATTTTGGTTAGGCTT
97777123 GGAATAGGTTGTAAATTTCATAAATTTCATTTCCTGAGCCTAGGGACAAAATTGGAATTTATGAA
261 GGAATAGGTTGTAAATTTCATAAATTTCATTTCCTGAGCCTAGGGACAAAATTGGAATTTATGAA
97777188 AAAGTTAGGGGCAAAATGGTAAT
326 AAAGTTAGGGGCAAAATGGTAAT
97777211 TAGCTTAATATATCTATTTGGGGGATAAATTTGAAGAATTATCAAAGTATGGAAATTAGGTCATG
1 TAGCTTAATATATCTATTTGGGGGATAAATTTGAAGAATTATCAAAGTATGGAAATTAGGTCATG
97777276 GATGTATATGCTGAAAATTATAAATTTATGGTAGAAAATGAAAGGTTATTGATAGATAAACAACT
66 GATGTATATGCTGAAAATTATAAATTTATGGTAGAAAATGAAAGGTTATTGATAGATAAACAACT
97777341 TTTGCAAAGTGATTTTTGATAAAAACATGATTTAGGGACTAAAATGTAAAGTTATGAATATTGAT
131 TTTGCAAAGTGATTTTTGATAAAAACATGATTTAGGGACTAAAATGTAAAGTTATGAATATTGAT
97777406 GAAAAATTTTGAAATTTATAGAAAATATGTGCTGTAAATTCTATATTGAAATTTTGGTTAGGCTT
196 GAAAAATTTTGAAATTTATAGAAAATATGTGCTGTAAATTCTATATTGAAATTTTGGTTAGGCTT
97777471 GGAATAGGTTGTAAATTTCATAAATTTCATTTCCTGAGCCTAGGGACAAAATTGGAATTTATGAA
261 GGAATAGGTTGTAAATTTCATAAATTTCATTTCCTGAGCCTAGGGACAAAATTGGAATTTATGAA
97777536 AAAGTTAGGGGCAAAATGGTAAT
326 AAAGTTAGGGGCAAAATGGTAAT
97777559 T
1 T
97777560 TTTCCTTGGA
Statistics
Matches: 349, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
348 349 1.00
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (348 bp):
TAGCTTAATATATCTATTTGGGGGATAAATTTGAAGAATTATCAAAGTATGGAAATTAGGTCATG
GATGTATATGCTGAAAATTATAAATTTATGGTAGAAAATGAAAGGTTATTGATAGATAAACAACT
TTTGCAAAGTGATTTTTGATAAAAACATGATTTAGGGACTAAAATGTAAAGTTATGAATATTGAT
GAAAAATTTTGAAATTTATAGAAAATATGTGCTGTAAATTCTATATTGAAATTTTGGTTAGGCTT
GGAATAGGTTGTAAATTTCATAAATTTCATTTCCTGAGCCTAGGGACAAAATTGGAATTTATGAA
AAAGTTAGGGGCAAAATGGTAAT
Found at i:97780878 original size:27 final size:27
Alignment explanation
Indices: 97780847--97781024 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97780837 TAAATTGTAC
97780847 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97780874 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97780900 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97780928 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97780956 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97780983 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97781010 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97781025 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97780961 original size:82 final size:81
Alignment explanation
Indices: 97780848--97781003 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97780838 AAATTGTACA
* *
97780848 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97780912 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97780929 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97780994 TGCGAGTTGA
65 TGCGAATTGA
97781004 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97781015 original size:82 final size:81
Alignment explanation
Indices: 97780844--97781024 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
97780834 GATTAAATTG
* *
97780844 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97780909 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97780925 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97780989 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97781007 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97781025 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97788941 original size:27 final size:27
Alignment explanation
Indices: 97788910--97789087 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97788900 TAAATTGTAC
97788910 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97788937 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97788963 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97788991 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97789019 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97789046 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97789073 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97789088 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97789024 original size:82 final size:81
Alignment explanation
Indices: 97788911--97789066 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97788901 AAATTGTACA
* *
97788911 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
97788975 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97788992 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
97789057 TGCGAGTTGA
65 TGCGAATTGA
97789067 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97789078 original size:82 final size:81
Alignment explanation
Indices: 97788907--97789087 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
97788897 GATTAAATTG
* *
97788907 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97788972 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97788988 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
97789052 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97789070 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97789088 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97799903 original size:51 final size:51
Alignment explanation
Indices: 97799818--97799942 Score: 146
Period size: 51 Copynumber: 2.5 Consensus size: 51
97799808 CGGATTCCCG
* *
97799818 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTT-CAAAAA
1 GTGGCCTGCACATAGTACCACACTTGTAGCCAAAGCTACCTT-TTACAAAAA
* * * * *
97799869 GTGGCCTTCACATAGTACCACACTTGT-GACCAAAGTTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTAG-CCAAAGCTACCTTTTACAAAAA
*
97799920 GTGGCCTGCACTTAGTACCACAC
1 GTGGCCTGCACATAGTACCACAC
97799943 ATATGATCGA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
50 3 0.05
51 60 0.95
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTAGCCAAAGCTACCTTTTACAAAAA
Found at i:97809038 original size:57 final size:58
Alignment explanation
Indices: 97808931--97809040 Score: 136
Period size: 57 Copynumber: 1.9 Consensus size: 58
97808921 AGCCGAGATG
* * * *
97808931 GGTAATCCTAATATAATCCCTCTCGAGCATGTGTTACAATTAGGGTTTAGCCTGGACT
1 GGTAATCCTAATATAAGCCCTCTCGAGCATATGTTACAATAAGGATTTAGCCTGGACT
*
97808989 GGTAATCCTAAT-TGAGCCCT-TCGGAGCATATGTTAC-ATAAAGGATTTAGCCT
1 GGTAATCCTAATATAAGCCCTCTC-GAGCATATGTTACAAT-AAGGATTTAGCCT
97809041 AGAATGGTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
56 4 0.09
57 29 0.64
58 12 0.27
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (58 bp):
GGTAATCCTAATATAAGCCCTCTCGAGCATATGTTACAATAAGGATTTAGCCTGGACT
Found at i:97822319 original size:22 final size:22
Alignment explanation
Indices: 97822294--97822346 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
97822284 GGAACACAAT
*
97822294 CATAATCAGGTTGGCACAGAGC
1 CATAATCAGGTTGGCACAAAGC
* *
97822316 CAT-ATGTAGGTTGGCGCAAAGC
1 CATAAT-CAGGTTGGCACAAAGC
97822338 CATAATCAG
1 CATAATCAG
97822347 AATAATTGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (22 bp):
CATAATCAGGTTGGCACAAAGC
Found at i:97822859 original size:27 final size:27
Alignment explanation
Indices: 97822827--97823258 Score: 296
Period size: 27 Copynumber: 16.0 Consensus size: 27
97822817 TTGGTAAATC
*
97822827 TACAAACCAAGGGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* * *
97822854 TGCAAACCAATGGTATTTCTA-TAATTTT
1 TACAAATCAAGGGTATTT-TAGTAA-TTT
**
97822882 TTTAAAGTCAAGGGTATTTCTA-TAATTT
1 TACAAA-TCAAGGGTATTT-TAGTAATTT
** * * *
97822910 TGTAAATTAGGGGTATTTTTGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* **
97822937 TCCAAATCAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* * * *
97822964 TCCAAATTAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
**
97822991 TACAAATCAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* ** *
97823018 TACAAGTTGAGGGTA-TTTCGATAATTT
1 TACAAATCAAGGGTATTTTAG-TAATTT
* *
97823045 TACAAGTCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* * * *
97823072 TACAAGTCGAGGGTATTTCAATAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* * ** * *
97823099 CACAAGTTGAGGGTATTTCAATAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* * *
97823126 CACAAATTAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
* * * *
97823153 TATAAATCAATGGTAATTTGGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
*** * *
97823180 TGTTAATCGAGGGTGTTTTAGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
** * *
97823207 TTTAAACCAAAGGTA-TTTAGTAATTT
1 TACAAATCAAGGGTATTTTAGTAATTT
** *
97823233 TGTAAACCAAGGGTATTTTAGTAATT
1 TACAAATCAAGGGTATTTTAGTAATT
97823259 CTACCTTACA
Statistics
Matches: 337, Mismatches: 61, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
26 28 0.08
27 273 0.81
28 20 0.06
29 16 0.05
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTTAGTAATTT
Found at i:97823246 original size:53 final size:54
Alignment explanation
Indices: 97823134--97823258 Score: 162
Period size: 53 Copynumber: 2.3 Consensus size: 54
97823124 TTCACAAATT
* * * * * *
97823134 AAGGGTATTTTGGTAATTTTATAAATCAATGGTAATTTGGTAATTTTGTTAATC
1 AAGGGTATTTTAGTAATTTTATAAACCAAAGGTAATTTAGTAATTTTGTAAACC
* * *
97823188 GAGGGTGTTTTAGTAATTTTTTAAACCAAAGGT-ATTTAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAACCAAAGGTAATTTAGTAATTTTGTAAACC
97823241 AAGGGTATTTTAGTAATT
1 AAGGGTATTTTAGTAATT
97823259 CTACCTTACA
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
53 33 0.55
54 27 0.45
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (54 bp):
AAGGGTATTTTAGTAATTTTATAAACCAAAGGTAATTTAGTAATTTTGTAAACC
Found at i:97823388 original size:18 final size:17
Alignment explanation
Indices: 97823355--97823389 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
97823345 ATTTATCCAC
*
97823355 TTGGGCCCTTTGGCCCA
1 TTGGGCCCTATGGCCCA
97823372 TTGGGCCCATATGGCCCA
1 TTGGGCCC-TATGGCCCA
97823390 AAGCAACCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.34, G:0.29, T:0.26
Consensus pattern (17 bp):
TTGGGCCCTATGGCCCA
Found at i:97826220 original size:41 final size:41
Alignment explanation
Indices: 97826163--97826312 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
97826153 TCGGGGTTTA
97826163 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
97826204 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
97826245 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
97826285 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
97826313 TGAGTCAGCG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:97849121 original size:47 final size:44
Alignment explanation
Indices: 97849051--97849176 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 44
97849041 GGGTTATTGT
97849051 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-A--ACATTGATGA
* *
97849097 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAACATT--GATGA
*
97849145 GTGCTAGTGTAAGACATGTCTGGGACATGCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCAT
97849177 TGGCCTCGAG
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
45 4 0.06
46 17 0.24
47 29 0.41
48 21 0.30
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGATGA
Done.