Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 297 of 310
Found at i:97849278 original size:44 final size:48
Alignment explanation
Indices: 97849051--97849324 Score: 137
Period size: 46 Copynumber: 5.8 Consensus size: 48
97849041 GGGTTATTGT
* * * **
97849051 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCACATTATG--A
1 GAGCTAATGTAAGACCATGTCTGGGACAGGCATCG-GCACAGAATGCTA
* * * **
97849097 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATG--A
1 GAGCTAATGTAAGACCATGTCTGGGACA-GGCATCGGCACAGA-ATGCTA
* * * * * *
97849145 GTGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGC-CTCGAGACG-TA
1 GAGCTAATGTAAGACCATGTCTGGGACAGGCATCGGCAC-AGA-ATGCTA
* * ** * *
97849192 AATC-AGGGTAAGA-CATGTCTAGGACATGCATCGGCTACCAG-ATG-T-
1 GAGCTAATGTAAGACCATGTCTGGGACAGGCATCGGC-A-CAGAATGCTA
*
97849237 G-TC-AATGTAAGACCATGTCTGGGACACGGCATCGGCACAGATATGCTA
1 GAGCTAATGTAAGACCATGTCTGGGACA-GGCATCGGCACAGA-ATGCTA
*
97849285 GAGCTTATGTAAGACCATGTCTGGGACATGGCATCGGCAC
1 GAGCTAATGTAAGACCATGTCTGGGACA-GGCATCGGCAC
97849325 CTTACCCTAT
Statistics
Matches: 180, Mismatches: 32, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
44 12 0.07
45 13 0.07
46 66 0.37
47 31 0.17
48 23 0.13
49 2 0.01
50 33 0.18
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCTAATGTAAGACCATGTCTGGGACAGGCATCGGCACAGAATGCTA
Found at i:97851336 original size:40 final size:39
Alignment explanation
Indices: 97851238--97851500 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
97851228 TCCTCGTTCA
* * * *
97851238 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
97851277 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
97851316 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
97851356 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
97851396 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
97851436 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
97851477 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97851501 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:97851460 original size:120 final size:119
Alignment explanation
Indices: 97851238--97851500 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
97851228 TCCTCGTTCA
* * *
97851238 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
97851303 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
97851356 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
97851421 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
97851477 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
97851501 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:97851509 original size:41 final size:41
Alignment explanation
Indices: 97851432--97851509 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
97851422 TTTGTATCTC
* * *
97851432 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
97851473 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
97851510 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:97859286 original size:40 final size:39
Alignment explanation
Indices: 97859188--97859450 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
97859178 TCCTCGTTCA
* * * *
97859188 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
97859227 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
97859266 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
97859306 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
97859346 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
97859386 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
97859427 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97859451 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:97859410 original size:120 final size:119
Alignment explanation
Indices: 97859188--97859450 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
97859178 TCCTCGTTCA
* * *
97859188 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
97859253 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
97859306 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
97859371 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
97859427 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
97859451 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:97859459 original size:41 final size:41
Alignment explanation
Indices: 97859382--97859459 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
97859372 TTTGTATCTC
* * *
97859382 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
97859423 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
97859460 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:97861546 original size:22 final size:21
Alignment explanation
Indices: 97861521--97861561 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
97861511 TTGTATTGGT
97861521 CACACGAGCGTGTTGCCCCTCC
1 CACACGAGCGTG-TGCCCCTCC
* *
97861543 CACATGGGCGTGTGCCCCT
1 CACACGAGCGTGTGCCCCT
97861562 GTATCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.41, G:0.27, T:0.20
Consensus pattern (21 bp):
CACACGAGCGTGTGCCCCTCC
Found at i:97863749 original size:43 final size:43
Alignment explanation
Indices: 97863633--97863787 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
97863623 CGTACAATGC
* *
97863633 CAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATG-
1 CAACGTCCCAGACATGGTCTTACACGTAAATCAAATA-CGATGT
* * * * *
97863675 CCACTATCCCAGACAGGGTCTTATAC-AAAATCAAATACGATGT
1 CAAC-GTCCCAGACATGGTCTTACACGTAAATCAAATACGATGT
* *
97863718 CAACGTCCCAGACATGGCCTTACACGTAAATCATAAGT-TGATGT
1 CAACGTCCCAGACATGGTCTTACACGTAAATCA-AA-TACGATGT
* **
97863762 CAATGTCCCAGATGTGGTCTTACACG
1 CAACGTCCCAGACATGGTCTTACACG
97863788 ATAACATATA
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 25 0.28
43 34 0.38
44 29 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
CAACGTCCCAGACATGGTCTTACACGTAAATCAAATACGATGT
Found at i:97864895 original size:13 final size:13
Alignment explanation
Indices: 97864877--97864901 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97864867 ACAAATGATC
97864877 AAATTTTCACACG
1 AAATTTTCACACG
97864890 AAATTTTCACAC
1 AAATTTTCACAC
97864902 ATATCATAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:97865422 original size:20 final size:20
Alignment explanation
Indices: 97865379--97865425 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
97865369 TTAACATGTT
* *
97865379 ATTTTTATTATTAAGATTAT
1 ATTTTAATTATTAAGATTAA
97865399 ATTTTAATTATTAA-ATTACA
1 ATTTTAATTATTAAGATTA-A
97865419 ATTTTAA
1 ATTTTAA
97865426 CCTTACTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTTTAATTATTAAGATTAA
Found at i:97866813 original size:41 final size:41
Alignment explanation
Indices: 97866767--97866908 Score: 180
Period size: 41 Copynumber: 3.5 Consensus size: 41
97866757 GTAAAACGCG
97866767 AAAAACAAAGCAATAGCGGCTTTTTTTGTTAAAACACCGCT
1 AAAAACAAAGCAATAGCGGCTTTTTTTGTTAAAACACCGCT
* * *
97866808 AAAAACAAAGCAATAGTGGCGTTTTTTGTTAAAACGCCGCT
1 AAAAACAAAGCAATAGCGGCTTTTTTTGTTAAAACACCGCT
* * *
97866849 AAAAACAAAGCAATAGTGG-TGTTTTTGGTAAAA-AGCCGCT
1 AAAAACAAAGCAATAGCGGCTTTTTTTGTTAAAACA-CCGCT
* * *
97866889 AAAACCAAAGTATTAGCGGC
1 AAAAACAAAGCAATAGCGGC
97866909 ACTTTCAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 31 0.35
41 57 0.65
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (41 bp):
AAAAACAAAGCAATAGCGGCTTTTTTTGTTAAAACACCGCT
Found at i:97866991 original size:47 final size:46
Alignment explanation
Indices: 97866937--97867074 Score: 132
Period size: 54 Copynumber: 2.8 Consensus size: 46
97866927 CTAAAATTCA
*
97866937 TATAACCCTTAAAACCTTAAACCCTAAAAAAATCATAAACACTAATC
1 TATAACCCTTAAAACC-TAAACCCTAAAAAAATCATAAACACTAAAC
* *
97866984 TATAACCCTTAAAACACTAAACCCTTAAACCCTAAAGAACCCTAAACACTAAAC
1 TATAACCCTTAAAAC-CTAAACCC-T-AA----AAA-AATCATAAACACTAAAC
* **
97867038 TATAACCTTTAAAACCCTAAACCCCCAAAAAATCATA
1 TATAACCCTTAAAA-CCTAAACCCTAAAAAAATCATA
97867075 TGGATGTTGA
Statistics
Matches: 74, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
47 27 0.36
48 5 0.07
49 2 0.03
52 1 0.01
53 3 0.04
54 35 0.47
55 1 0.01
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (46 bp):
TATAACCCTTAAAACCTAAACCCTAAAAAAATCATAAACACTAAAC
Found at i:97867034 original size:54 final size:55
Alignment explanation
Indices: 97866946--97867061 Score: 162
Period size: 54 Copynumber: 2.1 Consensus size: 55
97866936 ATATAACCCT
* * *
97866946 TAAAACCTTAAACCCTAAAAAAATCATAAACACTAATCTATAACCCTTAAAACAC
1 TAAACCCTTAAACCCTAAAAAAACCATAAACACTAAACTATAACCCTTAAAACAC
* * * *
97867001 TAAACCCTTAAACCCT-AAAGAACCCTAAACACTAAACTATAACCTTTAAAACCC
1 TAAACCCTTAAACCCTAAAAAAACCATAAACACTAAACTATAACCCTTAAAACAC
97867055 TAAACCC
1 TAAACCC
97867062 CCAAAAAATC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 39 0.72
55 15 0.28
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (55 bp):
TAAACCCTTAAACCCTAAAAAAACCATAAACACTAAACTATAACCCTTAAAACAC
Found at i:97867035 original size:17 final size:18
Alignment explanation
Indices: 97866987--97867036 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 18
97866977 ACTAATCTAT
97866987 AACCCTTAAAACACT--A-
1 AACCCTT-AAACACTAAAG
*
97867003 AACCCTTAAACCCTAAAG
1 AACCCTTAAACACTAAAG
97867021 AACCC-TAAACACTAAA
1 AACCCTTAAACACTAAA
97867037 CTATAACCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 6 0.21
16 7 0.24
17 11 0.38
18 5 0.17
ACGTcount: A:0.50, C:0.32, G:0.02, T:0.16
Consensus pattern (18 bp):
AACCCTTAAACACTAAAG
Found at i:97867036 original size:24 final size:24
Alignment explanation
Indices: 97866987--97867037 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
97866977 ACTAATCTAT
* *
97866987 AACCCTTAAAACACTAAACCCTTA
1 AACCCTAAAAACACTAAACACTTA
*
97867011 AACCCTAAAGAACCCTAAACAC-TA
1 AACCCTAAA-AACACTAAACACTTA
97867035 AAC
1 AAC
97867038 TATAACCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.49, C:0.33, G:0.02, T:0.16
Consensus pattern (24 bp):
AACCCTAAAAACACTAAACACTTA
Found at i:97867888 original size:14 final size:14
Alignment explanation
Indices: 97867869--97867913 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
97867859 TTAATTATCA
97867869 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
97867883 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
* *
97867897 ATATGGTTTAGGGT
1 TTATAGTTTAGGGT
97867911 TTA
1 TTA
97867914 AAGTGTATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:97867957 original size:15 final size:15
Alignment explanation
Indices: 97867937--97867979 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
97867927 ACTATTTTAA
97867937 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
97867952 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
97867966 GGTTTATGG-TTATG
1 GGTTTATGGATTATG
97867980 TAAGAGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.16
14 8 0.32
15 13 0.52
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:97867957 original size:22 final size:22
Alignment explanation
Indices: 97867932--97867974 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
97867922 GAGTTACTAT
*
97867932 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTATGGG
* *
97867954 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
97867975 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGGATTATGGG
Found at i:97868578 original size:8 final size:8
Alignment explanation
Indices: 97868539--97868613 Score: 62
Period size: 8 Copynumber: 8.9 Consensus size: 8
97868529 TTTATATGAT
97868539 AATTTAAA
1 AATTTAAA
97868547 AATTATAAA
1 AATT-TAAA
97868556 AATCTTCAAAAA
1 AAT-TT---AAA
97868568 AATTTAAA
1 AATTTAAA
97868576 AA-TTAAA
1 AATTTAAA
*
97868583 AATTAAAA
1 AATTTAAA
**
97868591 AATAAAAA
1 AATTTAAA
*
97868599 AACTTAAA
1 AATTTAAA
97868607 AATTTAA
1 AATTTAA
97868614 TATTTAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
7 7 0.13
8 31 0.56
9 8 0.15
10 1 0.02
11 2 0.04
12 6 0.11
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (8 bp):
AATTTAAA
Found at i:97868585 original size:15 final size:15
Alignment explanation
Indices: 97868565--97868620 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
97868555 AAATCTTCAA
97868565 AAAAATTTAAAAATT
1 AAAAATTTAAAAATT
* *
97868580 AAAAATTAAAAAATAA
1 AAAAATTTAAAAAT-T
*
97868596 AAAAACTTAAAAATT
1 AAAAATTTAAAAATT
* *
97868611 TAATATTTAA
1 AAAAATTTAA
97868621 TATTTTAGTC
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATTTAAAAATT
Found at i:97868607 original size:7 final size:7
Alignment explanation
Indices: 97868565--97868598 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
97868555 AAATCTTCAA
97868565 AAAAATTT
1 AAAAA-TT
97868573 AAAAATT
1 AAAAATT
97868580 AAAAATT
1 AAAAATT
*
97868587 AAAAAAT
1 AAAAATT
97868594 AAAAA
1 AAAAA
97868599 AACTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:97872563 original size:23 final size:23
Alignment explanation
Indices: 97872530--97872626 Score: 113
Period size: 23 Copynumber: 4.1 Consensus size: 23
97872520 CCCTACTAAA
97872530 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGCAAATTGAAGTGT
* *
97872554 TTAAATGCTGTAAATTGAAGTGC
1 TTAAATGCTGCAAATTGAAGTGT
* *
97872577 TTAAATGTTGTAAATTGAAGTGTT
1 TTAAATGCTGCAAATTGAAGTG-T
* **
97872601 TTAAGTAATGCAAATTGAAGTGT
1 TTAAATGCTGCAAATTGAAGTGT
97872624 TTA
1 TTA
97872627 GTTGCTGGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
23 41 0.64
24 23 0.36
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
TTAAATGCTGCAAATTGAAGTGT
Found at i:97873053 original size:19 final size:19
Alignment explanation
Indices: 97873030--97873076 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
97873020 ATTTAATCTA
*
97873030 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
97873048 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
97873068 ATTTTTATT
1 ATTTTTATT
97873077 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:97873388 original size:43 final size:43
Alignment explanation
Indices: 97873341--97873422 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
97873331 TTAAATTTCA
* * * *
97873341 TGACCTTTAGTGGCGTTTTTGGGAAAAGTGCCGCCAAAGGTTT
1 TGACCTTTAGCGGCATTTGTGGGAAAAGCGCCGCCAAAGGTTT
* *
97873384 TGACCTTTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAG
1 TGACCTTTAGCGGCATTTGTGGGAAAAGCGCCGCCAAAG
97873423 ATCATGGCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TGACCTTTAGCGGCATTTGTGGGAAAAGCGCCGCCAAAGGTTT
Found at i:97877660 original size:13 final size:13
Alignment explanation
Indices: 97877642--97877666 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97877632 GAAGGGAATA
97877642 ATGTTGTGGATGG
1 ATGTTGTGGATGG
97877655 ATGTTGTGGATG
1 ATGTTGTGGATG
97877667 AATTGACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (13 bp):
ATGTTGTGGATGG
Found at i:97897390 original size:21 final size:21
Alignment explanation
Indices: 97897364--97897419 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
97897354 TTGGCTACAC
97897364 GGGCGTGTGCCCCTTTCACAT
1 GGGCGTGTGCCCCTTTCACAT
*
97897385 GGGCGTATGCCCCTTTCACAT
1 GGGCGTGTGCCCCTTTCACAT
*
97897406 GGGCATGTGCCCCT
1 GGGCGTGTGCCCCT
97897420 ATGTCTAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.11, C:0.34, G:0.29, T:0.27
Consensus pattern (21 bp):
GGGCGTGTGCCCCTTTCACAT
Found at i:97902083 original size:94 final size:94
Alignment explanation
Indices: 97901922--97902109 Score: 367
Period size: 94 Copynumber: 2.0 Consensus size: 94
97901912 AGTGATTTGT
*
97901922 GACTGCTTGAAGGCCGCCTCGGATAGATAGAAATCCTACGTGGATTTGAAACAAAAGGAAATTGA
1 GACTGCTTGAAGGCCACCTCGGATAGATAGAAATCCTACGTGGATTTGAAACAAAAGGAAATTGA
97901987 GTTTCAAGTCTGTGATAAGGTATTTTTAA
66 GTTTCAAGTCTGTGATAAGGTATTTTTAA
97902016 GACTGCTTGAAGGCCACCTCGGATAGATAGAAATCCTACGTGGATTTGAAACAAAAGGAAATTGA
1 GACTGCTTGAAGGCCACCTCGGATAGATAGAAATCCTACGTGGATTTGAAACAAAAGGAAATTGA
97902081 GTTTCAAGTCTGTGATAAGGTATTTTTAA
66 GTTTCAAGTCTGTGATAAGGTATTTTTAA
97902110 AAGTATATCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (94 bp):
GACTGCTTGAAGGCCACCTCGGATAGATAGAAATCCTACGTGGATTTGAAACAAAAGGAAATTGA
GTTTCAAGTCTGTGATAAGGTATTTTTAA
Found at i:97906767 original size:40 final size:40
Alignment explanation
Indices: 97906712--97906893 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
97906702 NNNNNNNNNN
97906712 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
97906752 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
97906792 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
97906832 ATATCCGGGCTAAGACCCGAAGGCACTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
97906872 ATATCC-GGCTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
97906894 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 116 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:97917120 original size:47 final size:48
Alignment explanation
Indices: 97917045--97917161 Score: 127
Period size: 47 Copynumber: 2.5 Consensus size: 48
97917035 CACTGAAATA
* *
97917045 CATGTCTGGG--ATGTGCATCTG-CTATGAGATGAT-AGTCAGTGTAAGAC
1 CATGTCTGGGACATG-GCATC-GACTATGAGAT-ATGAGCCAGTATAAGAC
*
97917092 CATGTCTGGGACATGGCATCGACT-TGAGATATGAGCCAGTATAAGAT
1 CATGTCTGGGACATGGCATCGACTATGAGATATGAGCCAGTATAAGAC
* *
97917139 CGTGTCTAGGACATGGCATCGAC
1 CATGTCTGGGACATGGCATCGAC
97917162 ACCTTACCCT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
46 2 0.03
47 49 0.80
48 7 0.11
49 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCGACTATGAGATATGAGCCAGTATAAGAC
Found at i:97918142 original size:19 final size:19
Alignment explanation
Indices: 97918115--97918162 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
97918105 TGAAGGACAT
* *
97918115 GTGCTAGGCACACGAGCGC
1 GTGCCAGGCACACGAGCAC
* *
97918134 GTGCCAGGCACACGGGCAT
1 GTGCCAGGCACACGAGCAC
97918153 GTGCCAGGCA
1 GTGCCAGGCA
97918163 ATGTGAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (19 bp):
GTGCCAGGCACACGAGCAC
Found at i:97923503 original size:17 final size:18
Alignment explanation
Indices: 97923481--97923523 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
97923471 TTTTTATCTT
97923481 TTATCATGTA-TCAGACA
1 TTATCATGTATTCAGACA
* *
97923498 TTATCATTTATTTCAGGCA
1 TTATCATGTA-TTCAGACA
97923517 TTATCAT
1 TTATCAT
97923524 TAATCGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.41
19 13 0.59
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.44
Consensus pattern (18 bp):
TTATCATGTATTCAGACA
Found at i:97927772 original size:39 final size:39
Alignment explanation
Indices: 97927729--97927808 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
97927719 ATGGGGATAA
97927729 GAATGGTTAAAAAGTCAAATTAGGTGGGTTTTGGTAGCT
1 GAATGGTTAAAAAGTCAAATTAGGTGGGTTTTGGTAGCT
97927768 GAATGGTTAAAAAGTCAAATTAGGTGGGTTTTGGTAGCT
1 GAATGGTTAAAAAGTCAAATTAGGTGGGTTTTGGTAGCT
97927807 GA
1 GA
97927809 TTTGACTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (39 bp):
GAATGGTTAAAAAGTCAAATTAGGTGGGTTTTGGTAGCT
Found at i:97942092 original size:43 final size:42
Alignment explanation
Indices: 97941999--97942165 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 42
97941989 GGTTATTGAG
* * * *
97941999 ATGTGATTACATGTAAGACTACGTCTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGT
* *
97942041 ATTGTGATTACGTGTAAGACCATGTCTAGGAAATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCG-T
* * * * * *
97942085 ATATGATTTCGTGTAAGATCC-TGTCCGGGATAGTGGCATCGAT
1 ATGTGATTACATGTAAGA-CCATGTCTGGGAAATTGGCATCG-T
* * *
97942128 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCAT
97942166 TTTATGCGCT
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 9 0.09
43 89 0.87
44 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGAAATTGGCATCGT
Found at i:97944018 original size:40 final size:40
Alignment explanation
Indices: 97943940--97944163 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
97943930 ACCCAAGTAT
* *
97943940 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
97943979 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
97944019 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
97944059 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
97944102 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
97944142 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
97944164 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:97944136 original size:83 final size:80
Alignment explanation
Indices: 97943940--97944163 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
97943930 ACCCAAGTAT
* * * *
97943940 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
97944004 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
97944019 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
97944083 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
97944102 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
97944164 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:97954364 original size:43 final size:43
Alignment explanation
Indices: 97954280--97954460 Score: 259
Period size: 43 Copynumber: 4.4 Consensus size: 43
97954270 AACCCAAGTA
*
97954280 CCTTCGGGATTTAG-CCGGATATAGC-A--ACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATG
* *
97954319 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATG
* *
97954362 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATG
*
97954405 CCTTCGGGACTTAGCCCGGATATAGTAACT--T-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATG
97954445 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
97954461 GAGATATCAT
Statistics
Matches: 132, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
39 13 0.10
40 34 0.26
41 2 0.02
43 83 0.63
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (43 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATG
Found at i:97959807 original size:21 final size:20
Alignment explanation
Indices: 97959779--97959822 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
97959769 GATCTATATG
*
97959779 AGTAAATT-TAACATCAATTT
1 AGTAAATTGAAAC-TCAATTT
97959799 AGTACAATTGAAACTCAATTT
1 AGTA-AATTGAAACTCAATTT
97959820 AGT
1 AGT
97959823 CCAAATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 14 0.67
22 3 0.14
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (20 bp):
AGTAAATTGAAACTCAATTT
Found at i:97968289 original size:31 final size:31
Alignment explanation
Indices: 97968251--97968329 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
97968241 TTTAACGGTT
97968251 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
97968282 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
97968313 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
97968330 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:97968400 original size:42 final size:42
Alignment explanation
Indices: 97968353--97968444 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
97968343 TGGCCCTTAG
* ** *
97968353 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
97968395 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
97968437 GCCCATTT
1 GCCCATTT
97968445 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:97968621 original size:26 final size:26
Alignment explanation
Indices: 97968589--97968711 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
97968579 CCTCTTTAAT
**
97968589 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
97968614 AACTTGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
97968639 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
97968665 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
97968691 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
97968712 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 31 0.35
26 58 0.65
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:97968699 original size:52 final size:51
Alignment explanation
Indices: 97968589--97968711 Score: 221
Period size: 52 Copynumber: 2.4 Consensus size: 51
97968579 CCTCTTTAAT
*
97968589 AACTGGGGCA-AAGCCCTTTTCGGTAAACTTGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
97968639 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
97968691 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
97968712 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
50 10 0.14
51 24 0.34
52 36 0.51
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:97968795 original size:11 final size:11
Alignment explanation
Indices: 97968779--97968816 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
97968769 CATTGCATAG
97968779 ATATCATGTGC
1 ATATCATGTGC
97968790 ATATCA--TGC
1 ATATCATGTGC
97968799 ATATCATGTGC
1 ATATCATGTGC
97968810 ATATCAT
1 ATATCAT
97968817 ATCAATCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
11 16 0.64
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:97968827 original size:20 final size:20
Alignment explanation
Indices: 97968761--97968816 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
97968751 TTATGAATTC
97968761 ATCATGTGCAT-TGCATAG-AT
1 ATCATGTGCATAT-CAT-GCAT
97968781 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATGCAT
97968801 ATCATGTGCATATCAT
1 ATCATGTGCATATCAT
97968817 ATCAATCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.03
20 32 0.94
21 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATGCAT
Found at i:97969694 original size:27 final size:27
Alignment explanation
Indices: 97969664--97969749 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
97969654 GTAAATCTAC
97969664 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
97969691 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
97969717 AGAAAGTCAAGGGTATTTCTGTAAATTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
97969747 AAA
1 AAA
97969750 TTAGGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.46
28 7 0.15
29 17 0.35
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:97969767 original size:27 final size:27
Alignment explanation
Indices: 97969727--97969848 Score: 106
Period size: 27 Copynumber: 4.5 Consensus size: 27
97969717 AGAAAGTCAA
** *
97969727 GGGTATTTCT-GTAAATTTGTAAATTAG
1 GGGTATTT-TGGTAAATTTACAAACTAG
* *
97969754 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAAATTTACAAACTAG
* * *
97969780 AGGGCATTTCGGT-AATTTCACAAACCAG
1 -GGGTATTTTGGTAAATTT-ACAAACTAG
* *
97969808 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAAATTTACAAACTAG
97969835 GGGTATTTTGGTAA
1 GGGTATTTTGGTAA
97969849 TTCTATCCTA
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
26 7 0.09
27 63 0.84
28 5 0.07
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAAATTTACAAACTAG
Found at i:97969849 original size:27 final size:27
Alignment explanation
Indices: 97969751--97969850 Score: 130
Period size: 27 Copynumber: 3.7 Consensus size: 27
97969741 ATTTGTAAAT
97969751 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * * *
97969777 TTGAGGGCATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
* *
97969805 CAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
97969832 TAGGGGTATTTTGGTAATT
1 TAGGGGTATTTTGGTAATT
97969851 CTATCCTACA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.03
27 57 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:97969916 original size:27 final size:27
Alignment explanation
Indices: 97969882--97970052 Score: 261
Period size: 27 Copynumber: 6.3 Consensus size: 27
97969872 GTAATTTCAC
97969882 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
97969909 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
97969936 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
97969963 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
97969990 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * **
97970017 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
97970044 AATCGAGGG
1 AATCGAGGG
97970053 CATTTCAGTA
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:97970064 original size:81 final size:81
Alignment explanation
Indices: 97969882--97970072 Score: 229
Period size: 81 Copynumber: 2.4 Consensus size: 81
97969872 GTAATTTCAC
* * * * * *
97969882 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGCAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
* **
97969947 AAACGGTAATTTTGTA
66 AAACGGTAATTCTACA
* * *
97969963 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGCAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
*
97970028 AAATGGTAATTCTACA
66 AAACGGTAATTCTACA
*** *
97970044 AATCGAGGGCATTTCAGTAATTTGGTAAA
1 AATCGAGGGCAAAACAGTAATTTTGTAAA
97970073 CTAAAGTATT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (81 bp):
AATCGAGGGCAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTACA
Found at i:97972214 original size:19 final size:20
Alignment explanation
Indices: 97972175--97972214 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
97972165 AGACTTGTAT
97972175 ATCTATCAACAAACATTCAA
1 ATCTATCAACAAACATTCAA
*
97972195 ATCTATCAAGAAAC-TTCAA
1 ATCTATCAACAAACATTCAA
97972214 A
1 A
97972215 ACACATGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.50, C:0.23, G:0.03, T:0.25
Consensus pattern (20 bp):
ATCTATCAACAAACATTCAA
Found at i:97981047 original size:47 final size:47
Alignment explanation
Indices: 97980995--97981115 Score: 152
Period size: 47 Copynumber: 2.6 Consensus size: 47
97980985 GGATAATTGT
* * * * *
97980995 AATGTGAAAATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* * *
97981042 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* *
97981089 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
97981116 TCCCGAAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
Found at i:97983252 original size:21 final size:21
Alignment explanation
Indices: 97983228--97983299 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
97983218 TCATAGGAGC
*
97983228 TAAACGGAAACCCAAAAAGGT
1 TAAACTGAAACCCAAAAAGGT
* * *
97983249 TAAACTGAAGCTC-AAAAGAGC
1 TAAACTGAAACCCAAAAAG-GT
* *
97983270 TAAAATGAAACCCAGAAAGGT
1 TAAACTGAAACCCAAAAAGGT
97983291 TAAACTGAA
1 TAAACTGAA
97983300 GCTCATCAGA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
20 5 0.13
21 30 0.77
22 4 0.10
ACGTcount: A:0.51, C:0.17, G:0.18, T:0.14
Consensus pattern (21 bp):
TAAACTGAAACCCAAAAAGGT
Found at i:97983259 original size:42 final size:41
Alignment explanation
Indices: 97983184--97983321 Score: 168
Period size: 42 Copynumber: 3.3 Consensus size: 41
97983174 GCACATAAGT
** * * *
97983184 GCTAAACGGAAACCCGTAAGGGTTGAACGGAAGCTCATAGGA
1 GCTAAACGGAAACCCAAAAAGGTTAAACTGAAGCTCATA-GA
*
97983226 GCTAAACGGAAACCCAAAAAGGTTAAACTGAAGCTCAAAAGA
1 GCTAAACGGAAACCCAAAAAGGTTAAACTGAAGCTC-ATAGA
** *
97983268 GCTAAAATGAAACCCAGAAAGGTTAAACTGAAGCTCATCAGA
1 GCTAAACGGAAACCCAAAAAGGTTAAACTGAAGCTCAT-AGA
97983310 GCTAAACGGAAA
1 GCTAAACGGAAA
97983322 GTAAAAGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 79 0.96
43 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.14
Consensus pattern (41 bp):
GCTAAACGGAAACCCAAAAAGGTTAAACTGAAGCTCATAGA
Found at i:97988194 original size:27 final size:27
Alignment explanation
Indices: 97988164--97988341 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
97988154 ATATTGAGTC
* * * *
97988164 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97988191 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97988218 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97988246 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97988273 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97988300 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97988327 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97988342 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97988303 original size:82 final size:81
Alignment explanation
Indices: 97988185--97988340 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
97988175 TGCTATATAA
* *
97988185 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97988250 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97988267 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97988331 CACTTAGTGC
65 CACTTAGTGC
97988341 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97998975 original size:96 final size:92
Alignment explanation
Indices: 97998868--97999122 Score: 250
Period size: 96 Copynumber: 2.7 Consensus size: 92
97998858 GGTATAATGT
*
97998868 CGATGCCATGTCCCAGACATGGTCTTA-ACTGGCTCATCCATCAAGTCGATGCTATGTCCCAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCAAGCCGATGC-ATGTCCCAAAC
* *
97998932 ATGGTCTTACACTAGCTCTCACATATC-CGTGC
64 AT-GTCTTACAATAGCT-T-ACATATCAAG-GC
* * * * ** *
97998964 CGATGCCATGTCCCAGATATGGTCTTACACTGACACATCTTGTAGCCGATGCATGTCCCAGACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCAAGCCGATGCATGTCCCAAACAT
* *
97999029 GTCTTACAATGGCTTACATCTCAAGGC
66 GTCTTACAATAGCTTACATATCAAGGC
* * *
97999056 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGTCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--ATCAA-GCCGATG-CATGTCCCAA
97999118 ACATG
62 ACATG
97999123 GTGTTACATT
Statistics
Matches: 134, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
89 2 0.01
90 12 0.09
91 15 0.11
92 20 0.15
93 17 0.13
94 12 0.09
95 12 0.09
96 36 0.27
97 8 0.06
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCAAGCCGATGCATGTCCCAAACAT
GTCTTACAATAGCTTACATATCAAGGC
Found at i:97999048 original size:46 final size:44
Alignment explanation
Indices: 97998962--97999122 Score: 153
Period size: 46 Copynumber: 3.5 Consensus size: 44
97998952 ACATATCCGT
* * **
97998962 GCCGATGCCATGTCCCAGATATGGTCTTACACTGACACATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACAATGACACATC-TCAAG
*
97999008 GCCGATGCATGTCCCAGACATGTCTTACAATGGCTTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACAATGAC--ACATCTCAAG
* * * * *
97999054 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACAAT-G-ACACATCTCAAG
97999100 GCCGATGTCATGTCCCAGACATG
1 GCCGATG-CATGTCCCAGACATG
97999123 GTGTTACATT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 56 0.57
47 16 0.16
48 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACAATGACACATCTCAAG
Found at i:97999169 original size:140 final size:141
Alignment explanation
Indices: 97998875--97999176 Score: 316
Period size: 140 Copynumber: 2.1 Consensus size: 141
97998865 TGTCGATGCC
* *
97998875 ATGTCCCAGACATGGTCTTA-ACTGGC-T-CATCCATCAA-GTCGATGCTATGTCCCAAACATGG
1 ATGTCCCAGACAT-GTCTTACAATGGCTTACAT-C-TCAAGGCCGATGCTATGTCCCAAACATGG
** *
97998936 TCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAGATATGGTCTTACACTGACACA
63 TCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
** *
97999001 TCTTGTAGCCGATGC
127 TAATGTAGCCGATGA
*
97999016 ATGTCCCAGACATGTCTTACAATGGCTTACATCTCAAGGCCGATGC-ATGTCCCAGACAT-GTCT
1 ATGTCCCAGACATGTCTTACAATGGCTTACATCTCAAGGCCGATGCTATGTCCCAAACATGGTCT
* * * * * *
97999079 TACACTAGCTCT-CGTCTCAATGCCGATGTCATGTCCCAGACATGGTGTTACATTGGTTCTA-AT
66 TACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACAT
*
97999142 AATGTGGCCGATGA
128 AATGTAGCCGATGA
*
97999156 ATGTCCTTA-ACATGTCTTACA
1 ATGTCC-CAGACATGTCTTACA
97999177 CTAGCGCACA
Statistics
Matches: 136, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
138 34 0.25
139 1 0.01
140 53 0.39
141 36 0.26
142 9 0.07
143 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (141 bp):
ATGTCCCAGACATGTCTTACAATGGCTTACATCTCAAGGCCGATGCTATGTCCCAAACATGGTCT
TACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATAAT
GTAGCCGATGA
Found at i:98006786 original size:46 final size:47
Alignment explanation
Indices: 98006676--98006890 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 47
98006666 ATATCCGTGC
* * * *
98006676 CGATGCCATGTCCCAGACATAGTCTTACACTGACAC-ATATCGT-AGCT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTATATCTTGAGGT
*
98006723 -AATGCATGTCCCAGACATGTCTTACACTGGCT-TATATCTTGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTATATCTTGAGGT
* * ** ** * *
98006768 CGATGCATATCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTATATCTTGAGGT
* ** *
98006814 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-ATAATGTGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTATATCTTGAGGT
* *
98006862 CGATGCAGGTCCCTGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
98006891 AGTGCACAAA
Statistics
Matches: 133, Mismatches: 28, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
44 18 0.14
45 17 0.13
46 51 0.38
47 26 0.20
48 21 0.16
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTATATCTTGAGGT
Found at i:98006839 original size:94 final size:92
Alignment explanation
Indices: 98006723--98006892 Score: 252
Period size: 94 Copynumber: 1.8 Consensus size: 92
98006713 TATCGTAGCT
** *
98006723 AATGCATGTCCCAGACATGTCTTACACTGGCT-TATATCTTGAGGTCGATGCATATCCCAGACAT
1 AATGCATGTCCCAGACATGTCTTACACTGGCTCTA-ATAATGAGGTCGATGCAGATCCCAGACAT
98006787 GTCTTACACTAGCTCTCGTCTCAATGCC
65 GTCTTACACTAGCTCTCGTCTCAATGCC
* * *
98006815 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTAATAATGTGGTCGATGCAGGTCCCTGACA
1 AATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTAATAATGAGGTCGATGCAGATCCCAGACA
98006880 TGTCTTACACTAG
64 TGTCTTACACTAG
98006893 TGCACAAATA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 49 0.71
95 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (92 bp):
AATGCATGTCCCAGACATGTCTTACACTGGCTCTAATAATGAGGTCGATGCAGATCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGCC
Found at i:98009711 original size:12 final size:12
Alignment explanation
Indices: 98009694--98009718 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98009684 GAGTTACATG
98009694 GCCTAGCACACA
1 GCCTAGCACACA
98009706 GCCTAGCACACA
1 GCCTAGCACACA
98009718 G
1 G
98009719 GCGTGTGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.40, G:0.20, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACA
Found at i:98014922 original size:47 final size:47
Alignment explanation
Indices: 98014851--98015300 Score: 828
Period size: 47 Copynumber: 9.6 Consensus size: 47
98014841 CCCTTCGGGA
* * * * * *
98014851 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98014898 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98014945 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98014992 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98015039 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98015086 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98015133 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98015180 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98015227 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98015274 CTTATCACATATATAAACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
98015301 AGTGATTTTC
Statistics
Matches: 394, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 394 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:98019671 original size:39 final size:39
Alignment explanation
Indices: 98019628--98019707 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
98019618 TAAATAATTA
*
98019628 TTTTCATGGTCTCTGTGGGTACGATAACTCGACATTTAC
1 TTTTCATAGTCTCTGTGGGTACGATAACTCGACATTTAC
98019667 TTTTCATAGTCTCTGTGGGTACGATAACTCGACATTTAC
1 TTTTCATAGTCTCTGTGGGTACGATAACTCGACATTTAC
98019706 TT
1 TT
98019708 GTCACTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (39 bp):
TTTTCATAGTCTCTGTGGGTACGATAACTCGACATTTAC
Found at i:98027004 original size:9 final size:9
Alignment explanation
Indices: 98026987--98027025 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
98026977 TTCATCACAC
*
98026987 TTTCATTCT
1 TTTCTTTCT
98026996 TTTCTTTCT
1 TTTCTTTCT
*
98027005 TTTCTTTAT
1 TTTCTTTCT
*
98027014 TTCCTTTCT
1 TTTCTTTCT
98027023 TTT
1 TTT
98027026 ACATAAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:98030153 original size:46 final size:46
Alignment explanation
Indices: 98030103--98030278 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
98030093 TGGTTGAGCA
98030103 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98030149 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
98030194 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98030242 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98030279 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98030259 original size:93 final size:93
Alignment explanation
Indices: 98030100--98030271 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98030090 GGATGGTTGA
* *
98030100 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98030165 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
98030193 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98030258 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
98030272 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98037728 original size:46 final size:46
Alignment explanation
Indices: 98037678--98037853 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
98037668 TGGTTGAGCA
98037678 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98037724 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
98037769 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98037817 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98037854 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98037834 original size:93 final size:93
Alignment explanation
Indices: 98037675--98037846 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98037665 GGATGGTTGA
* *
98037675 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98037740 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
98037768 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98037833 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
98037847 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98043038 original size:18 final size:18
Alignment explanation
Indices: 98043017--98043055 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
98043007 ATCAGAATTG
*
98043017 GAACCAAAATGAGAAACA
1 GAACCAAAATCAGAAACA
* *
98043035 GAACCAGAATCAGTAACA
1 GAACCAAAATCAGAAACA
98043053 GAA
1 GAA
98043056 TCAGAATCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.18, G:0.18, T:0.08
Consensus pattern (18 bp):
GAACCAAAATCAGAAACA
Found at i:98043042 original size:6 final size:6
Alignment explanation
Indices: 98043028--98043092 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
98043018 AACCAAAATG
* * *
98043028 AGAAAC AGAACC AGAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
98043076 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
98043093 TAGTANNNNN
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
5 5 0.10
6 40 0.82
7 3 0.06
8 1 0.02
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:98043055 original size:24 final size:24
Alignment explanation
Indices: 98043028--98043097 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
98043018 AACCAAAATG
* * *
98043028 AGAAACAGAACCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTAAC
98043052 AGAATCAGAATCA-ATATTAGTAAC
1 AGAATCAGAATCAGA-ATTAGTAAC
98043076 AGAATCAGAATCAGAATTAGTA
1 AGAATCAGAATCAGAATTAGTA
98043098 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTAAC
Found at i:98043860 original size:27 final size:26
Alignment explanation
Indices: 98043822--98044206 Score: 421
Period size: 27 Copynumber: 14.3 Consensus size: 26
98043812 NNNNNNNNNN
98043822 TAATTCTGTAAACTGAGGGTAAAACGG
1 TAATTCTGTAAA-TGAGGGTAAAACGG
*
98043849 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAAT-GAGGGTAAAACGG
98043876 TAATTCTGTAAACTGAGGGTAAAACGG
1 TAATTCTGTAAA-TGAGGGTAAAACGG
*
98043903 TAATTCTCTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAAT-GAGGGTAAAACGG
* ** *
98043930 TAATTTTACAAATTAAGGGTAAAACGG
1 TAATTCTGTAAA-TGAGGGTAAAACGG
**
98043957 TAACTT-TGTAAATCGAGGGTAAAATAG
1 TAA-TTCTGTAAAT-GAGGGTAAAACGG
*
98043984 TAATTCTGTAAATTGAGGATAAAACGG
1 TAATTCTGTAAA-TGAGGGTAAAACGG
* * **
98044011 TAATTATATAAATTGAGGGTAAAATAG
1 TAATTCTGTAAA-TGAGGGTAAAACGG
* *
98044038 TAATTCTGTAACCTGAGGGTAAAACGA
1 TAATTCTGTAA-ATGAGGGTAAAACGG
*
98044065 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAAT-GAGGGTAAAACGG
* *
98044092 TAATTTTGTAAACTGAGGTTAAAACGG
1 TAATTCTGTAAA-TGAGGGTAAAACGG
**
98044119 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAAT-GAGGGTAAAACGG
*
98044146 TAATTCTGTAAACTGAGGGTAAAACGA
1 TAATTCTGTAAA-TGAGGGTAAAACGG
**
98044173 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAAT-GAGGGTAAAACGG
98044200 TAATTCT
1 TAATTCT
98044207 TAACAATACG
Statistics
Matches: 302, Mismatches: 42, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.03
27 287 0.95
28 7 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (26 bp):
TAATTCTGTAAATGAGGGTAAAACGG
Found at i:98043904 original size:54 final size:54
Alignment explanation
Indices: 98043822--98044206 Score: 574
Period size: 54 Copynumber: 7.1 Consensus size: 54
98043812 NNNNNNNNNN
*
98043822 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
* **
98043876 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTCTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
* ** * *
98043930 TAATTTTACAAATTAAGGGTAAAACGGTAACTT-TGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAA-TTCTGTAAATCGAGGGTAAAATAG
* * * * *
98043984 TAATTCTGTAAATTGAGGATAAAACGGTAATTATATAAATTGAGGGTAAAATAG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
* * *
98044038 TAATTCTGTAACCTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
* *
98044092 TAATTTTGTAAACTGAGGTTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
*
98044146 TAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
98044200 TAATTCT
1 TAATTCT
98044207 TAACAATACG
Statistics
Matches: 296, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
53 2 0.01
54 292 0.99
55 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG
Found at i:98047117 original size:27 final size:27
Alignment explanation
Indices: 98047086--98047151 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
98047076 TACCCTACAG
* *
98047086 GGGTATTTCGATAATTTGACACTA-TAA
1 GGGTATTTCGATAATTTGACA-AACCAA
* *
98047113 GGGTATTTCAATAATTTTACAAACCAA
1 GGGTATTTCGATAATTTGACAAACCAA
98047140 GGGTATTTCGAT
1 GGGTATTTCGAT
98047152 CGGGGGTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 32 0.97
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGATAATTTGACAAACCAA
Found at i:98047172 original size:42 final size:42
Alignment explanation
Indices: 98047113--98047193 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
98047103 GACACTATAA
98047113 GGGTATTTCAATAATTTTACAAACCAAGGGTATTTCGATCGG
1 GGGTATTTCAATAATTTTACAAACCAAGGGTATTTCGATCGG
** * *
98047155 GGGTATTTCGGTAATTTTATAAACTAAGGGTATTTCGAT
1 GGGTATTTCAATAATTTTACAAACCAAGGGTATTTCGAT
98047194 AATTTTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (42 bp):
GGGTATTTCAATAATTTTACAAACCAAGGGTATTTCGATCGG
Found at i:98047185 original size:27 final size:27
Alignment explanation
Indices: 98047155--98047337 Score: 185
Period size: 27 Copynumber: 6.9 Consensus size: 27
98047145 TTTCGATCGG
* *
98047155 GGGTATTTCGGTAATTTTATAAACTAA
1 GGGTATTTCGGTAATTTTACAAACTGA
* *
98047182 GGGTATTTCGATAATTTTAAAAACTGA
1 GGGTATTTCGGTAATTTTACAAACTGA
* ** * *
98047209 GGATATTTTAGTAATTTTA-TAACCGA
1 GGGTATTTCGGTAATTTTACAAACTGA
* *
98047235 GAGTATTTTGGTAATTTTACAAACTGA
1 GGGTATTTCGGTAATTTTACAAACTGA
*
98047262 GGGTATTTCAGTAATTTTACAAA-TCG-
1 GGGTATTTCGGTAATTTTACAAACT-GA
* *
98047288 GGGTACTTCGGTAATTTTACAAA-TCGG
1 GGGTATTTCGGTAATTTTACAAACT-GA
*
98047315 GGGTATTTCAGTAATTTTACAAA
1 GGGTATTTCGGTAATTTTACAAA
98047338 TCAGGGTCTT
Statistics
Matches: 132, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 46 0.35
27 86 0.65
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTGA
Found at i:98047321 original size:80 final size:80
Alignment explanation
Indices: 98047150--98047337 Score: 211
Period size: 80 Copynumber: 2.4 Consensus size: 80
98047140 GGGTATTTCG
* *
98047150 ATCGGGGGTATTTCGGTAATTTTATAAACTAAGGGTATTTCGATAATTTTAAAAACTGAGGATAT
1 ATCGGGGGTATTTCGGTAATTTTACAAACTAAGGGTATTTCGATAATTTTAAAAACTGAGGATAC
* *
98047215 TTTAGTAATTTTATA
66 TTCAGTAATTTTAAA
* * * * * * *
98047230 ACCGAGAGTATTTTGGTAATTTTACAAACTGAGGGTATTTC-AGTAATTTTACAAA-TCG-GGGT
1 ATCGGGGGTATTTCGGTAATTTTACAAACTAAGGGTATTTCGA-TAATTTTAAAAACT-GAGGAT
*
98047292 ACTTCGGTAATTTTACAA
64 ACTTCAGTAATTTTA-AA
*
98047310 ATCGGGGGTATTTCAGTAATTTTACAAA
1 ATCGGGGGTATTTCGGTAATTTTACAAA
98047338 TCAGGGTCTT
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
79 17 0.19
80 71 0.81
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
ATCGGGGGTATTTCGGTAATTTTACAAACTAAGGGTATTTCGATAATTTTAAAAACTGAGGATAC
TTCAGTAATTTTAAA
Found at i:98047334 original size:53 final size:54
Alignment explanation
Indices: 98047155--98047344 Score: 208
Period size: 53 Copynumber: 3.6 Consensus size: 54
98047145 TTTCGATCGG
* * * * *
98047155 GGGTATTTCGGTAATTTTATAAACTAAGGGTATTTCGATAATTTTA-AAAACTGA
1 GGGTATTTCAGTAATTTTACAAA-TCAGGGTATTTCGGTAATTTTACAAATCTGA
* * * * * *
98047209 GGATATTTTAGTAATTTTA-TAACCGAGAGTATTTTGGTAATTTTACAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-AGGGTATTTCGGTAATTTTACAAATCTGA
* * *
98047262 GGGTATTTCAGTAATTTTACAAATCGGGGTACTTCGGTAATTTTACAAATC-GG
1 GGGTATTTCAGTAATTTTACAAATCAGGGTATTTCGGTAATTTTACAAATCTGA
98047315 GGGTATTTCAGTAATTTTACAAATCAGGGT
1 GGGTATTTCAGTAATTTTACAAATCAGGGT
98047345 CTTAACGACC
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
53 90 0.80
54 23 0.20
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGTATTTCGGTAATTTTACAAATCTGA
Found at i:98050667 original size:20 final size:20
Alignment explanation
Indices: 98050642--98050681 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
98050632 ATTTATAATG
*
98050642 GATGGATGCTAAATAATCTT
1 GATGGATGATAAATAATCTT
98050662 GATGGATGATAAATAATCTT
1 GATGGATGATAAATAATCTT
98050682 TATTTTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (20 bp):
GATGGATGATAAATAATCTT
Found at i:98063226 original size:43 final size:44
Alignment explanation
Indices: 98063090--98063305 Score: 181
Period size: 43 Copynumber: 4.9 Consensus size: 44
98063080 GAATTAAGAT
* * ** *
98063090 ATCCGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATG-TGAGA
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGATGAGC
* * * * ** * *
98063133 ATTCGAACTTGTTGAGTGGTCCAAGTTTGTGAT-TAT-ATG-GC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGATGAGC
98063174 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGA-GAGC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGATGAGC
* *
98063217 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGATACATGTAAC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCAT--T--ATG-GAT-GATG-AGC
* *
98063268 ATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATG
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATG
98063306 TGTTACATGT
Statistics
Matches: 142, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
41 27 0.19
42 8 0.06
43 61 0.43
45 1 0.01
46 3 0.02
47 6 0.04
48 3 0.02
49 2 0.01
50 1 0.01
51 30 0.21
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (44 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGATGAGC
Found at i:98063231 original size:84 final size:84
Alignment explanation
Indices: 98063090--98063243 Score: 218
Period size: 84 Copynumber: 1.8 Consensus size: 84
98063080 GAATTAAGAT
* * * * *
98063090 ATCCGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAGAATTCGAACTTGTTGAGTGGTCC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATAGATGAGAGAATCCGAACTCGTTGAGTGGTCC
98063155 AAGTTTGTGATTATATGGC
66 AAGTTTGTGATTATATGGC
* * * *
98063174 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGAGAGCATCCGAGCTCGTTGAGTGGTCC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATAGATGAGAGAATCCGAACTCGTTGAGTGGTCC
*
98063239 GAGTT
66 AAGTT
98063244 CATAATGGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (84 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATAGATGAGAGAATCCGAACTCGTTGAGTGGTCC
AAGTTTGTGATTATATGGC
Found at i:98063292 original size:51 final size:51
Alignment explanation
Indices: 98063216--98063315 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
98063206 TGGATGAGAG
* *
98063216 CATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAA
* * *
98063267 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGATACATGT
98063316 TATAAGGTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (51 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAA
Found at i:98066691 original size:10 final size:10
Alignment explanation
Indices: 98066651--98066693 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
98066641 TATTGAATCA
*
98066651 TATGCTTTGG
1 TATGATTTGG
98066661 TATGATTTTGG
1 TATGA-TTTGG
*
98066672 TTTAGATTTGG
1 TAT-GATTTGG
98066683 TATGATTTGG
1 TATGATTTGG
98066693 T
1 T
98066694 TGGTGAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:98073499 original size:24 final size:24
Alignment explanation
Indices: 98073467--98073527 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
98073457 AAAATCCAAT
* * *
98073467 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTATAAT-TA
98073491 GCACTATGTGTGCGAGTATAATTA
1 GCACTATGTGTGCGAGTATAATTA
98073515 GCACTATGTGTGC
1 GCACTATGTGTGC
98073528 AAATTTGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTATAATTA
Found at i:98077181 original size:40 final size:40
Alignment explanation
Indices: 98077098--98077360 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
98077088 TTGAATGCTG
* * * * * *
98077098 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
98077138 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
98077178 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
98077218 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
98077258 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
98077298 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
98077337 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
98077361 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:98077380 original size:79 final size:80
Alignment explanation
Indices: 98077137--98077395 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
98077127 AAGTGAATAT
* * * * * *
98077137 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
98077201 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
98077217 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
98077282 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
98077297 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
98077361 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
98077376 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
98077396 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:98079838 original size:44 final size:42
Alignment explanation
Indices: 98079788--98079946 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 42
98079778 TATGTGTTAT
*
98079788 CGTGTAAGACCACGTTTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGATTTA
* **
98079832 CGTGTAAGACCACGTTTGGGATGTTGGCATCGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTA
* *
98079874 TGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCG--ATTTGATTTA
* * *
98079917 CATGGAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
98079947 TGTATGAGCT
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 36 0.37
44 33 0.34
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTA
Found at i:98082548 original size:33 final size:34
Alignment explanation
Indices: 98082477--98082541 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
98082467 TGCATTTTGT
*
98082477 ACTGATACTGTTACTGAATTAGTCTAAAGCCCAC
1 ACTGATACTGTTACTGAATTAGGCTAAAGCCCAC
*
98082511 ACTGATACTGTTACTGAA-TGGGCTAAAGCCC
1 ACTGATACTGTTACTGAATTAGGCTAAAGCCC
98082542 TAACTGAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 11 0.38
34 18 0.62
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (34 bp):
ACTGATACTGTTACTGAATTAGGCTAAAGCCCAC
Found at i:98083409 original size:10 final size:10
Alignment explanation
Indices: 98083369--98083411 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
98083359 TATTGAATCA
*
98083369 TATGCTTTGG
1 TATGATTTGG
98083379 TATGACTTTGG
1 TATGA-TTTGG
*
98083390 TTTAGATTTGG
1 TAT-GATTTGG
98083401 TATGATTTGG
1 TATGATTTGG
98083411 T
1 T
98083412 TAGTGAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.05, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:98085764 original size:39 final size:38
Alignment explanation
Indices: 98085642--98085777 Score: 155
Period size: 39 Copynumber: 3.5 Consensus size: 38
98085632 TATAAATAGG
* * *
98085642 GGCACGAATGTGCATTAAGGGTACCAAAGTACAAACAA
1 GGCACGTATGTGCAATCAGGGTACCAAAGTACAAACAA
* * *
98085680 GGCCACGTATGTGTAATTAGGGGTACCAAAGTACAGACAA
1 GG-CACGTATGTGCAATCA-GGGTACCAAAGTACAAACAA
* *
98085720 TGGCACGTATGTGCAATCAGGGTACCGAAGTACAAATAGA
1 -GGCACGTATGTGCAATCAGGGTACCAAAGTACAAACA-A
*
98085760 GGCACATATGTGCAATCA
1 GGCACGTATGTGCAATCA
98085778 TACAATAATT
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 45 0.54
40 34 0.41
41 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (38 bp):
GGCACGTATGTGCAATCAGGGTACCAAAGTACAAACAA
Found at i:98090489 original size:48 final size:46
Alignment explanation
Indices: 98090366--98090734 Score: 315
Period size: 48 Copynumber: 7.7 Consensus size: 46
98090356 GGTAAAATAT
* * *
98090366 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCAGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CACATA-A-CAATGC
* *
98090416 CGATGCCATGTCCCAGACATAGTCTTACACTGACACGTATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCAC--ATAACAATGC
* * * *
98090464 TGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCACATAACAATGC
* * *** *
98090512 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CACATAACAATGC
* *
98090560 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCACATAACAATGC
* ** * * * *
98090608 CGATGTCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAACTAGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CACAT-AAC-AATGC
* * * * * *
98090658 CGGTGCTATGTCCCAGACATGGTCTTACACTGACACATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATAACAATGC
*
98090704 CAATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
98090735 AGCTCTCATA
Statistics
Matches: 258, Mismatches: 49, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
46 29 0.11
47 4 0.02
48 153 0.59
49 6 0.02
50 66 0.26
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATAACAATGC
Found at i:98090565 original size:96 final size:95
Alignment explanation
Indices: 98090366--98090745 Score: 397
Period size: 96 Copynumber: 3.9 Consensus size: 95
98090356 GGTAAAATAT
* * * *
98090366 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCAGTGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA-A-CAATGCCGATGCCATGTCCCA
* * * * *
98090431 GACATAGTCTTACACTGACACGT-ATAACAATGC
64 AACATGGTCTTACACTGGCTC-TCATAA-TATGC
* * * *
98090464 TGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTCCCAAA
* * *
98090529 CATGGTCTTACACTGGCTCACATATTGACGC
66 CATGGTCTTACACTGGCTCTCATAAT-ATGC
* * **
98090560 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGTCATGTTTCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTCCCAAA
*
98090625 CATGGTCTTACACTGGCTCTCATAAACTAGTGT
66 CATGGTCTTACACTGGCTCTCAT-AA-TA-TGC
* * * * * * * *
98090658 CGGTGCTATGTCCCAGACATGGTCTTACACT-G-ACACATATCGAGGCCAATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTCCCAAA
*
98090721 CATGGTCTTACACTAGCTCTCATAA
66 CATGGTCTTACACTGGCTCTCATAA
98090746 CCCTAGTATC
Statistics
Matches: 238, Mismatches: 39, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
95 2 0.01
96 166 0.70
97 4 0.02
98 66 0.28
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTCCCAAA
CATGGTCTTACACTGGCTCTCATAATATGC
Found at i:98090628 original size:144 final size:146
Alignment explanation
Indices: 98090366--98090746 Score: 468
Period size: 144 Copynumber: 2.6 Consensus size: 146
98090356 GGTAAAATAT
* * * * *
98090366 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCAGTGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA-TTGA-CGCCGATGCCATGTCCCA
* * *
98090431 GACATAGTCTTACACT-G-ACACGTATAACAATGCTGATGCCATGTTCCAAACATGGTCTTACAC
64 GACATGGTCTTACACTAGCTCAC--ATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACAC
98090494 TAGCTCACAT-AAC-AATGC
127 TAGCTCACATAAACTAATGC
* * *
98090512 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGACGCCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGACGCCGATGCCATGTCCCAGA
* * *
98090577 CATGGTCTTACACTAGCTCACATAACAATGCCGATGTCATGTTTCAAACATGGTCTTACACTGGC
66 CATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC
* * *
98090642 TCTCATAAACTAGTGT
131 TCACATAAACTAATGC
* * * * * *
98090658 CGGTGCTATGTCCCAGACATGGTCTTACACT-G-ACACATATCGAGGCCAATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGACGCCGATGCCATGTCCCAGA
*
98090721 CATGGTCTTACACTAGCTCTCATAAC
66 CATGGTCTTACACTAGCTCACATAAC
98090747 CCTAGTATCA
Statistics
Matches: 204, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
144 126 0.62
145 7 0.03
146 71 0.35
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (146 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGACGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC
TCACATAAACTAATGC
Found at i:98100830 original size:96 final size:96
Alignment explanation
Indices: 98100713--98100886 Score: 260
Period size: 96 Copynumber: 1.8 Consensus size: 96
98100703 TATAACAATA
* * * *
98100713 CCGATGCCATGTTCCAAACATGGTCTTACACTAACTCACATAACAATGTCGATGTCATGCTCCAA
1 CCGACGCCATGTTCCAAACATGGTCTTACACTAACTCACATAACAATGCCAATGCCATGCTCCAA
98100778 AAATGGTCTTACATTAGCTAGCATATTGAGG
66 AAATGGTCTTACATTAGCTAGCATATTGAGG
* * *
98100809 CCGACGCCATG-TCCTAGACATGGTCTTACACTAGCTCACATAACAATGCCAATGCCATGTTCCA
1 CCGACGCCATGTTCC-AAACATGGTCTTACACTAACTCACATAACAATGCCAATGCCATGCTCCA
*
98100873 AACATGGTCTTACA
65 AAAATGGTCTTACA
98100887 CTGGCTCTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
95 3 0.04
96 66 0.96
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (96 bp):
CCGACGCCATGTTCCAAACATGGTCTTACACTAACTCACATAACAATGCCAATGCCATGCTCCAA
AAATGGTCTTACATTAGCTAGCATATTGAGG
Found at i:98100929 original size:50 final size:48
Alignment explanation
Indices: 98100621--98100950 Score: 209
Period size: 48 Copynumber: 6.8 Consensus size: 48
98100611 AATACCGATT
* * * *
98100621 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCAGTGTCAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATA-A-CAATGCCAATG
* ** * * * * *
98100671 CAACATCCTAGACATGGTCTTACACT-GAC-AAGTATAACAATACCGATG
1 CCATGTCCCAGACATGGTCTTACACTAG-CTCA-CATAACAATGCCAATG
* * * * *
98100719 CCATGTTCCAAACATGGTCTTACACTAACTCACATAACAATGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCAATG
* * * * *** * * *
98100767 TCATG-CTCCAAAAATGGTCTTACATTAGCT-AGCATATTGAGGCCGACG
1 CCATGTC-CCAGACATGGTCTTACACTAGCTCA-CATAACAATGCCAATG
*
98100815 CCATGTCCTAGACATGGTCTTACACTAGCTCACATAACAATGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCAATG
* * * ** ** * *
98100863 CCATGTTCCAAACATGGTCTTACACTGGCTCTTATAAACCGGTGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACAT-AA-CAATGCCAATG
* *
98100913 CCATGTCCCAGACATGGTCTTACACTAGCACTCATAAC
1 CCATGTCCCAGACATGGTCTTACACTAGCTCACATAAC
98100951 CCTAGTATCA
Statistics
Matches: 211, Mismatches: 59, Indels: 22
0.72 0.20 0.08
Matches are distributed among these distances:
47 1 0.00
48 138 0.65
49 9 0.04
50 63 0.30
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCAATG
Found at i:98107048 original size:40 final size:40
Alignment explanation
Indices: 98106993--98107201 Score: 292
Period size: 40 Copynumber: 5.2 Consensus size: 40
98106983 TATTCGGATG
98106993 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
98107033 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
98107076 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
98107116 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
98107156 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
98107196 ATATCC
1 ATATCC
98107202 AGCTAAATCC
Statistics
Matches: 152, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
40 114 0.75
41 1 0.01
43 37 0.24
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:98107136 original size:83 final size:80
Alignment explanation
Indices: 98106997--98107201 Score: 288
Period size: 83 Copynumber: 2.5 Consensus size: 80
98106987 CGGATGATAT
* **
98106997 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
98107062 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
98107080 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
98107145 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* *
98107160 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCC
98107202 AGCTAAATCC
Statistics
Matches: 113, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
79 2 0.02
80 45 0.40
81 2 0.02
83 64 0.57
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:98116165 original size:43 final size:43
Alignment explanation
Indices: 98116030--98116195 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
98116020 ATAAGCTCGT
** *
98116030 ACAATGCC-ATATCCCAGTTATGGTCTTACATGTTAAT--ATATA
1 ACAATGCCAATATCCCAGACATGGTCTTACACG-TAATCCA-ATA
* * * * * *
98116072 TCGATGCCACTATCCCAGACA-GGATCTTACACGAAATCGATTA
1 ACAATGCCAATATCCCAGACATGG-TCTTACACGTAATCCAATA
* *
98116115 ACGATGCCAATATCTCAGACATGGTCTTACACGTAATCTCAAT-
1 ACAATGCCAATATCCCAGACATGGTCTTACACGTAATC-CAATA
* * *
98116158 ACAATGCCAATGTCCCAGAAATGGTCTTACATGTAATC
1 ACAATGCCAATATCCCAGACATGGTCTTACACGTAATC
98116196 ACATCTCGGT
Statistics
Matches: 99, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
42 11 0.11
43 83 0.84
44 5 0.05
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
ACAATGCCAATATCCCAGACATGGTCTTACACGTAATCCAATA
Found at i:98121396 original size:16 final size:16
Alignment explanation
Indices: 98121377--98121414 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
98121367 GTATAAACTA
98121377 AATCAAGTTACCACTT
1 AATCAAGTTACCACTT
*
98121393 AATCAATTTACCACTT
1 AATCAAGTTACCACTT
98121409 AATCAA
1 AATCAA
98121415 CTCTCAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.24, G:0.03, T:0.32
Consensus pattern (16 bp):
AATCAAGTTACCACTT
Found at i:98123762 original size:38 final size:38
Alignment explanation
Indices: 98123671--98123770 Score: 128
Period size: 38 Copynumber: 2.6 Consensus size: 38
98123661 GGGTGTTACA
* *
98123671 CATGTATTTGGCTCAACAGTAACAGTAGACATGTTTAT
1 CATGTATTTGGTTCAACAGTAACAATAGACATGTTTAT
*** ** *
98123709 CATGTATTCAATTCAATGGTAACAATAGAGATGTTTAT
1 CATGTATTTGGTTCAACAGTAACAATAGACATGTTTAT
98123747 CATGTATTTGGTTCAACAGTAACA
1 CATGTATTTGGTTCAACAGTAACA
98123771 GTAGGCATAC
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (38 bp):
CATGTATTTGGTTCAACAGTAACAATAGACATGTTTAT
Found at i:98126175 original size:10 final size:10
Alignment explanation
Indices: 98126160--98126236 Score: 59
Period size: 10 Copynumber: 7.7 Consensus size: 10
98126150 GAAACGATTT
98126160 TGGGCCATTC
1 TGGGCCATTC
*
98126170 TGGGCCGA-AC
1 TGGGCC-ATTC
*
98126180 TGGGACATTC
1 TGGGCCATTC
**
98126190 TGGGCCAAAC
1 TGGGCCATTC
98126200 TGGGCCATTC
1 TGGGCCATTC
* *
98126210 TAGGCCAAAT-
1 TGGGCC-ATTC
98126220 TGGGCCATTC
1 TGGGCCATTC
*
98126230 TAGGCCA
1 TGGGCCA
98126237 AATTGGGCCA
Statistics
Matches: 50, Mismatches: 13, Indels: 8
0.70 0.18 0.11
Matches are distributed among these distances:
9 3 0.06
10 44 0.88
11 3 0.06
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (10 bp):
TGGGCCATTC
Found at i:98126188 original size:20 final size:20
Alignment explanation
Indices: 98126160--98126246 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
98126150 GAAACGATTT
* *
98126160 TGGGCCATTCTGGGCCGAAC
1 TGGGCCATTCTAGGCCAAAC
* *
98126180 TGGGACATTCTGGGCCAAAC
1 TGGGCCATTCTAGGCCAAAC
*
98126200 TGGGCCATTCTAGGCCAAAT
1 TGGGCCATTCTAGGCCAAAC
*
98126220 TGGGCCATTCTAGGCCAAAT
1 TGGGCCATTCTAGGCCAAAC
98126240 TGGGCCA
1 TGGGCCA
98126247 CGTAGGCCCA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (20 bp):
TGGGCCATTCTAGGCCAAAC
Found at i:98126257 original size:20 final size:19
Alignment explanation
Indices: 98126159--98126263 Score: 88
Period size: 20 Copynumber: 5.4 Consensus size: 19
98126149 CGAAACGATT
* *
98126159 TTGGGCCATTCTGGGCCGAA
1 TTGGGCCA-TCTAGGCCAAA
* * *
98126179 CTGGGACATTCTGGGCCAAA
1 TTGGGCCA-TCTAGGCCAAA
*
98126199 CTGGGCCATTCTAGGCCAAA
1 TTGGGCCA-TCTAGGCCAAA
98126219 TTGGGCCATTCTAGGCCAAA
1 TTGGGCCA-TCTAGGCCAAA
*
98126239 TTGGGCCA-CGTAGGCCCAA
1 TTGGGCCATC-TAGGCCAAA
98126258 -TGGGCC
1 TTGGGCC
98126264 TATGTCCCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
18 7 0.09
19 8 0.10
20 62 0.81
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (19 bp):
TTGGGCCATCTAGGCCAAA
Found at i:98128712 original size:54 final size:54
Alignment explanation
Indices: 98128630--98128809 Score: 193
Period size: 54 Copynumber: 3.3 Consensus size: 54
98128620 CCTATAGGGT
* *
98128630 AAAATGACTATTTTACCTTTATGTGTTAAATTGACAG-TTTAGCCATTATGTGGC
1 AAAATGACTATTTTGCCCTTATGTGTTAAATTGA-AGATTTAGCCATTATGTGGC
* * * * *
98128684 AAAATAACTATTTTGCCCTTATGTGTTAAATTGATGATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGTTAAATTGAAGATTTAGCCATTATGTGGC
* * * * * *
98128738 AAAATGACTAGTTTGCCCTTATGCGTTAAATTGATGGTTTTAACC-TTATGTGTC
1 AAAATGACTATTTTGCCCTTATGTGTTAAATTGA-AGATTTAGCCATTATGTGGC
* *
98128792 AAAATGACTGTTTAGCCC
1 AAAATGACTATTTTGCCC
98128810 CTATTTGATG
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 98 0.93
55 6 0.06
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (54 bp):
AAAATGACTATTTTGCCCTTATGTGTTAAATTGAAGATTTAGCCATTATGTGGC
Found at i:98128804 original size:27 final size:27
Alignment explanation
Indices: 98128629--98128809 Score: 143
Period size: 27 Copynumber: 6.7 Consensus size: 27
98128619 CCCTATAGGG
* * *
98128629 TAAAATGACTATTTTACCTTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * * * *
98128656 TAAATTGACAGTTTAGCCATTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * *
98128683 CAAAATAACTATTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* *
98128710 TAAATTGA-TGATTTTGCCCTTATGTGG
1 TAAAATGACTG-TTTTGCCCTTATGTGT
*
98128737 TAAAATGACTAG-TTTGCCCTTATGCGT
1 TAAAATGACT-GTTTTGCCCTTATGTGT
* **
98128764 TAAATTGA-TGGTTTTAACCTTATGTGT
1 TAAAATGACT-GTTTTGCCCTTATGTGT
* *
98128791 CAAAATGACTGTTTAGCCC
1 TAAAATGACTGTTTTGCCC
98128810 CTATTTGATG
Statistics
Matches: 116, Mismatches: 33, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
26 3 0.03
27 110 0.95
28 2 0.02
29 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGT
Found at i:98131916 original size:24 final size:24
Alignment explanation
Indices: 98131889--98131936 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
98131879 GATTTTGTGC
98131889 CATCGATTCTCCCTCCGATGCACA
1 CATCGATTCTCCCTCCGATGCACA
*
98131913 CATCGATTCTCCCTTCGATGCACA
1 CATCGATTCTCCCTCCGATGCACA
98131937 TATATCTCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.40, G:0.12, T:0.27
Consensus pattern (24 bp):
CATCGATTCTCCCTCCGATGCACA
Found at i:98133224 original size:97 final size:97
Alignment explanation
Indices: 98133058--98133252 Score: 354
Period size: 97 Copynumber: 2.0 Consensus size: 97
98133048 AACCAGACTA
* *
98133058 TCTTGAAAGCAGTGGATTAGTAGCTGGTCATTGTTAACATATCCCGTCATTCGCCTGCAGAACAT
1 TCTTGAAAGCAGTGGATTAGCAGCTGGTCATTGTTAACATATCCCGTCATTCGCCTGCAAAACAT
98133123 GGTGATGTGGGCTTCAGGGCAACTTGTTCCAT
66 GGTGATGTGGGCTTCAGGGCAACTTGTTCCAT
98133155 TCTTGAAAGCAGTGGATTAGCAGCTGGTCATTGTTAACATATCCCGTCATTCGCCTGCAAAACAT
1 TCTTGAAAGCAGTGGATTAGCAGCTGGTCATTGTTAACATATCCCGTCATTCGCCTGCAAAACAT
* *
98133220 GGTGATGTGGGCTTCAGGGGAAGTTGTTCCAT
66 GGTGATGTGGGCTTCAGGGCAACTTGTTCCAT
98133252 T
1 T
98133253 GTATTTCTCG
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 94 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (97 bp):
TCTTGAAAGCAGTGGATTAGCAGCTGGTCATTGTTAACATATCCCGTCATTCGCCTGCAAAACAT
GGTGATGTGGGCTTCAGGGCAACTTGTTCCAT
Found at i:98137756 original size:3 final size:3
Alignment explanation
Indices: 98137748--98137803 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
98137738 AATGACAATG
* * *
98137748 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA CATA GAAA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA ATA ATA
98137795 ATA ATA ATA
1 ATA ATA ATA
98137804 TATGACTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 41 0.91
4 4 0.09
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:98137816 original size:29 final size:29
Alignment explanation
Indices: 98137759--98137818 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
98137749 TAATAATAAT
* *
98137759 AATAATAATAATAATAATATTACATAGAA
1 AATAATAATAATAATAATATGACAAAGAA
*
98137788 AATAATGATAATAAT-ATATGACTAAAGAA
1 AATAATAATAATAATAATATGAC-AAAGAA
98137817 AA
1 AA
98137819 AAAATATACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (29 bp):
AATAATAATAATAATAATATGACAAAGAA
Found at i:98138019 original size:25 final size:23
Alignment explanation
Indices: 98137976--98138021 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
98137966 GTGATATTAA
98137976 AAATATATACATAAAAATATAAT
1 AAATATATACATAAAAATATAAT
*
98137999 AAATATATATATAATATAATATA
1 AAATATATACATAA-A-AATATA
98138022 TACATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 13 0.65
24 1 0.05
25 6 0.30
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
AAATATATACATAAAAATATAAT
Found at i:98138020 original size:39 final size:39
Alignment explanation
Indices: 98137977--98138053 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
98137967 TGATATTAAA
*
98137977 AATATATACATAAAAATA-TAATAAATATATATATAATAT
1 AATATATACAT-AAAATAGTAATAAAAATATATATAATAT
* *
98138016 AATATATACATAATATAGTATTAAAAATATATATAATA
1 AATATATACATAAAATAGTAATAAAAATATATATAATA
98138054 CATACACATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 5 0.15
39 29 0.85
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (39 bp):
AATATATACATAAAATAGTAATAAAAATATATATAATAT
Found at i:98138021 original size:16 final size:16
Alignment explanation
Indices: 98137992--98138032 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
98137982 ATACATAAAA
98137992 ATATAATA-AATATAT
1 ATATAATATAATATAT
98138007 ATATAATATAATATAT
1 ATATAATATAATATAT
*
98138023 ACATAATATA
1 ATATAATATA
98138033 GTATTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATATAATATAT
Found at i:98138022 original size:27 final size:26
Alignment explanation
Indices: 98137978--98138048 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
98137968 GATATTAAAA
*
98137978 ATATATACATAAAAATATA-ATAAATAT
1 ATATATA-ATAAATATATACAT-AATAT
98138005 ATATATAATATAATATATACATAATAT
1 ATATATAATA-AATATATACATAATAT
98138032 AGTAT-TAA-AAATATATA
1 A-TATATAATAAATATATA
98138049 TAATACATAC
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
25 8 0.20
26 4 0.10
27 23 0.57
28 5 0.12
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (26 bp):
ATATATAATAAATATATACATAATAT
Found at i:98138310 original size:24 final size:24
Alignment explanation
Indices: 98138243--98138299 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
98138233 TAGTAATTAT
* * * *
98138243 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
98138267 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
98138291 AATAATAAT
1 AATAATAAT
98138300 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:98140495 original size:40 final size:40
Alignment explanation
Indices: 98140435--98140538 Score: 172
Period size: 40 Copynumber: 2.6 Consensus size: 40
98140425 CAAGCAAAAT
* *
98140435 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
* *
98140475 TGCCGTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
98140515 TGCCTTCGGGTCTTAGCCCGGATA
1 TGCCTTCGGGTCTTAGCCCGGATA
98140539 AAATCACTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
Found at i:98149667 original size:18 final size:17
Alignment explanation
Indices: 98149644--98149685 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
98149634 AAACATAATG
98149644 ATATATAAAAA-TAATACT
1 ATATATAAAAAGT-ATA-T
98149662 ATATATAAAAAGTATAT
1 ATATATAAAAAGTATAT
98149679 ATATATA
1 ATATATA
98149686 CACGTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 14 0.61
19 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
ATATATAAAAAGTATAT
Found at i:98149797 original size:22 final size:21
Alignment explanation
Indices: 98149767--98149817 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
98149757 CATGTACATA
*
98149767 ATATGGTATTTAAAAAATATAT
1 ATATAGTATTT-AAAAATATAT
*
98149789 ATATAGTA-TTAAAAATGTAT
1 ATATAGTATTTAAAAATATAT
*
98149809 ACATAGTAT
1 ATATAGTAT
98149818 ATATACTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 16 0.64
21 2 0.08
22 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATAGTATTTAAAAATATAT
Found at i:98149802 original size:20 final size:20
Alignment explanation
Indices: 98149779--98149817 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98149769 ATGGTATTTA
*
98149779 AAAAATATATATATAGTATT
1 AAAAATATATACATAGTATT
*
98149799 AAAAATGTATACATAGTAT
1 AAAAATATATACATAGTAT
98149818 ATATACTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAAATATATACATAGTATT
Found at i:98150674 original size:22 final size:21
Alignment explanation
Indices: 98150649--98150712 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
98150639 ACGATAATGG
*
98150649 TAATGGTAAATATAATAATAAA
1 TAATGGTAAAAATAATAA-AAA
**
98150671 TAATATTAAAAATAATAAAAA
1 TAATGGTAAAAATAATAAAAA
*
98150692 -AATGGTAAAAGTAATATAAAA
1 TAATGGTAAAAATAATA-AAAA
98150713 AAACTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
20 13 0.37
21 7 0.20
22 15 0.43
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (21 bp):
TAATGGTAAAAATAATAAAAA
Found at i:98152408 original size:10 final size:10
Alignment explanation
Indices: 98152380--98152410 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
98152370 TCTTCCATTA
*
98152380 TGAAGATAAT
1 TGAAGATATT
98152390 TGAAGATATT
1 TGAAGATATT
98152400 TGAAGATATT
1 TGAAGATATT
98152410 T
1 T
98152411 TTATATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (10 bp):
TGAAGATATT
Done.